Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTB	0	genome.wustl.edu	37	7	5567503	5567503	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	7	5567503	5567503	C	G	SNP	ACTB	ENST00000331789	human	ensembl	69_37n	-1	known	missense	c.1004	p.R335P	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTB	HGNC	ENSG00000075624	35	0	0.00	25	12	32.43	-	-	-
ACTG2	0	genome.wustl.edu	37	2	74146651	74146651	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	2	74146651	74146651	G	T	SNP	ACTG2	ENST00000345517	human	ensembl	69_37n	+1	known	missense	c.1080	p.K360N	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTG2	HGNC	ENSG00000163017	193	0	0.00	128	45	26.01	-	-	-
BAX	0	genome.wustl.edu	37	19	49458970	49458971	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	19	49458970	49458971	-	G	INS	BAX	ENST00000293288	human	ensembl	69_37n	+1	known	frame_shift_ins	c.113_114	p.E41fs	0.585:0.588	NULL	pfam_Bcl2_BH,smart_Bcl2_BH,pfscan_Bcl2-like_apoptosis,prints_Bcl2_BH	-	no_errors	BAX	HGNC	ENSG00000087088	27	0	0.00	29	4	12.12	-	-	-
C10orf71	0	genome.wustl.edu	37	10	50532174	50532174	+	Silent	SNP	A	A	G			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	10	50532174	50532174	A	G	SNP	C10orf71	ENST00000374144	human	ensembl	69_37n	+1	known	silent	c.1584	p.R528	0.000	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354	177	0	0.00	79	23	22.55	-	-	-
CNOT3	0	genome.wustl.edu	37	19	54649666	54649667	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	19	54649666	54649667	-	C	INS	CNOT3	ENST00000221232	human	ensembl	69_37n	+1	known	frame_shift_ins	c.724_725	p.P244fs	1.000:1.000	pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	23	0	0.00	52	6	10.34	-	-	-
CPT1C	0	genome.wustl.edu	37	19	50208555	50208555	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	19	50208555	50208555	G	T	SNP	CPT1C	ENST00000323446	human	ensembl	69_37n	+1	known	missense	c.964	p.D322Y	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	48	0	0.00	49	20	28.99	-	-	-
ERBB2IP	0	genome.wustl.edu	37	5	65370946	65370946	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	5	65370946	65370946	A	T	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	+1	known	missense	c.3851	p.H1284L	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	388	0	0.00	176	51	22.27	-	-	-
LRP4	0	genome.wustl.edu	37	11	46917494	46917495	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	11	46917494	46917495	-	C	INS	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1124_1123	p.A375fs	0.850:0.844	superfamily_Growth_fac_rcpt,smart_EGF-like	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	39	0	0.00	26	4	13.33	-	-	-
MERTK	0	genome.wustl.edu	37	2	112786351	112786351	+	Silent	SNP	C	C	T			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	2	112786351	112786351	C	T	SNP	MERTK	ENST00000295408	human	ensembl	69_37n	+1	known	silent	c.2910	p.S970	0.348	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	102	0	0.00	33	15	31.25	-	-	-
PADI3	0	genome.wustl.edu	37	1	17609568	17609568	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	1	17609568	17609568	G	-	DEL	PADI3	ENST00000375460	human	ensembl	69_37n	+1	known	frame_shift_del	c.1989	p.*665fs	0.996	NULL	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI3	HGNC	ENSG00000142619	46	0	0.00	24	11	31.43	-	-	-
SRXN1	0	genome.wustl.edu	37	20	629434	629434	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	20	629434	629434	A	T	SNP	SRXN1	ENST00000381962	human	ensembl	69_37n	-1	known	missense	c.338	p.I113N	1.000	pfam_ParBc,superfamily_ParBc,smart_ParBc,pirsf_Sulfiredoxin	pfam_ParBc,superfamily_ParBc,smart_ParBc,pirsf_Sulfiredoxin	-	no_errors	SRXN1	HGNC	ENSG00000172070	16	0	0.00	3	4	50.00	-	-	-
STK32B	0	genome.wustl.edu	37	4	5399971	5399971	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	4	5399971	5399971	G	A	SNP	STK32B	ENST00000282908	human	ensembl	69_37n	+1	known	missense	c.472	p.G158R	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STK32B	HGNC	ENSG00000152953	153	0	0.00	51	17	25.00	-	-	-
SYPL2	0	genome.wustl.edu	37	1	110020512	110020512	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	1	110020512	110020512	G	A	SNP	SYPL2	ENST00000369872	human	ensembl	69_37n	+1	known	missense	c.529	p.D177N	1.000	pfam_MARVEL-like_dom	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYPL2	HGNC	ENSG00000143028	27	0	0.00	45	15	25.00	-	-	-
TAF1	0	genome.wustl.edu	37	X	70678132	70678132	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	X	70678132	70678132	T	A	SNP	TAF1	ENST00000373775	human	ensembl	69_37n	+1	known	missense	c.947	p.L316H	0.999	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TAF1	HGNC	ENSG00000147133	91	0	0.00	98	26	20.97	-	-	-
UNC13C	0	genome.wustl.edu	37	15	54825146	54825146	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	15	54825146	54825146	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	+1	known	nonsense	c.5578	p.Q1860*	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	83	0	0.00	49	23	31.94	-	-	-
