Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AGXT2	0	genome.wustl.edu	37	5	35039475	35039475	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	5	35039475	35039475	C	A	SNP	AGXT2	ENST00000231420	human	ensembl	69_37n	-1	known	missense	c.316	p.D106Y	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	AGXT2	HGNC	ENSG00000113492	96	0	0.00	80	13	13.98	-	-	-
BEND3	0	genome.wustl.edu	37	6	107390228	107390228	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	6	107390228	107390228	C	T	SNP	BEND3	ENST00000369042	human	ensembl	69_37n	-1	known	missense	c.2167	p.D723N	1.000	NULL	pfam_BEN_domain	-	no_errors	BEND3	HGNC	ENSG00000178409	42	0	0.00	28	5	15.15	-	-	-
BOD1L1	0	genome.wustl.edu	37	4	13605938	13605938	+	Silent	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	4	13605938	13605938	G	A	SNP	BOD1L1	ENST00000040738	human	ensembl	69_37n	-1	known	silent	c.2586	p.I862	0.000	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219	350	1	0.28	214	39	15.42	-	-	-
CUX2	0	genome.wustl.edu	37	12	111785675	111785675	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	12	111785675	111785675	C	T	SNP	CUX2	ENST00000261726	human	ensembl	69_37n	+1	known	missense	c.4007	p.P1336L	0.000	NULL	pfam_Hmoeo_CUT,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeodomain,pfscan_Homeodomain,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249	55	0	0.00	48	10	17.24	-	-	-
CYTH3	0	genome.wustl.edu	37	7	6210581	6210581	+	Silent	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	6210581	6210581	G	A	SNP	CYTH3	ENST00000350796	human	ensembl	69_37n	-1	known	silent	c.591	p.I197	1.000	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH3	HGNC	ENSG00000008256	123	0	0.00	154	18	10.47	-	-	-
DCAF12	0	genome.wustl.edu	37	9	34125232	34125232	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	9	34125232	34125232	G	A	SNP	DCAF12	ENST00000361264	human	ensembl	69_37n	-1	known	missense	c.122	p.P41L	0.974	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876	95	0	0.00	82	33	28.70	-	-	-
EPDR1	0	genome.wustl.edu	37	7	37960275	37960275	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	37960275	37960275	C	A	SNP	EPDR1	ENST00000559325	human	ensembl	69_37n	+1	known	missense	c.94	p.Q32K	0.095	NULL	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289	28	0	0.00	25	4	13.79	-	-	-
EPHA6	0	genome.wustl.edu	37	3	97185269	97185269	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	3	97185269	97185269	C	G	SNP	EPHA6	ENST00000502694	human	ensembl	69_37n	+1	known	missense	c.13	p.P5A	0.001	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	297	0	0.00	169	20	10.58	-	-	-
EXOC4	0	genome.wustl.edu	37	7	132937919	132937919	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	132937919	132937919	C	T	SNP	EXOC4	ENST00000253861	human	ensembl	69_37n	+1	known	missense	c.62	p.S21L	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558	86	0	0.00	59	8	11.76	-	-	-
FAM192A	0	genome.wustl.edu	37	16	57188235	57188235	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	16	57188235	57188235	G	A	SNP	FAM192A	ENST00000565956	human	ensembl	69_37n	-1	novel	missense	c.430	p.L144F	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FAM192A	HGNC	ENSG00000172775	116	0	0.00	59	10	14.49	-	-	-
FAM196B	0	genome.wustl.edu	37	5	169310560	169310560	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	5	169310560	169310560	G	A	SNP	FAM196B	ENST00000377365	human	ensembl	69_37n	-1	known	missense	c.343	p.L115F	0.999	NULL	NULL	-	no_errors	FAM196B	HGNC	ENSG00000204767	167	0	0.00	105	20	16.00	-	-	-
FXR1	0	genome.wustl.edu	37	3	180687950	180687950	+	Nonsense_Mutation	SNP	C	C	G			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	3	180687950	180687950	C	G	SNP	FXR1	ENST00000482125	human	ensembl	69_37n	+1	novel	nonsense	c.209	p.S70*	1.000	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FXR1	HGNC	ENSG00000114416	117	0	0.00	57	25	30.49	-	-	-
GBP5	0	genome.wustl.edu	37	1	89732775	89732775	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	1	89732775	89732775	C	G	SNP	GBP5	ENST00000343435	human	ensembl	69_37n	-1	known	missense	c.490	p.E164Q	0.156	pfam_Guanylate-bd_N	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	-	no_errors	GBP5	HGNC	ENSG00000154451	139	0	0.00	77	14	15.38	-	-	-
GFM1	0	genome.wustl.edu	37	3	158376754	158376754	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	3	158376754	158376754	G	A	SNP	GFM1	ENST00000486715	human	ensembl	69_37n	+1	known	missense	c.1127	p.G376E	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Transl_elong_EFG/EF2	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	199	0	0.00	138	21	13.21	-	-	-
GLRB	0	genome.wustl.edu	37	4	158065056	158065056	+	Silent	SNP	C	C	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	4	158065056	158065056	C	T	SNP	GLRB	ENST00000264428	human	ensembl	69_37n	+1	known	silent	c.849	p.L283	0.751	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Glycine_rcpt_B,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRB	HGNC	ENSG00000109738	302	0	0.00	147	24	14.04	-	-	-
GREB1L	0	genome.wustl.edu	37	18	19019528	19019528	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	18	19019528	19019528	C	T	SNP	GREB1L	ENST00000579454	human	ensembl	69_37n	+1	putative	nonsense	c.400	p.Q134*	0.656	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GREB1L	HGNC	ENSG00000141449	255	0	0.00	103	20	16.26	-	-	-
HIVEP2	0	genome.wustl.edu	37	6	143091478	143091478	+	Silent	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	6	143091478	143091478	G	A	SNP	HIVEP2	ENST00000012134	human	ensembl	69_37n	-1	known	silent	c.4398	p.Y1466	0.147	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818	442	0	0.00	197	43	17.92	-	-	-
KAT6B	0	genome.wustl.edu	37	10	76603067	76603067	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	10	76603067	76603067	G	A	SNP	KAT6B	ENST00000287239	human	ensembl	69_37n	+1	known	missense	c.452	p.R151Q	1.000	pfam_Histone_H1/H5,smart_Histone_H1/H5	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650	111	0	0.00	62	26	29.55	-	-	-
MST1P9	0	genome.wustl.edu	37	1	17085995	17085996	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	1	17085995	17085996	-	C	INS	MST1P9	ENST00000334998	human	ensembl	69_37n	-1	known	frame_shift_ins	c.902_901	p.A301fs	0.980:0.979	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	MST1P9	HGNC	ENSG00000186715	12	0	0.00	10	5	33.33	-	-	-
NYAP1	0	genome.wustl.edu	37	7	100088184	100088184	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	7	100088184	100088184	C	T	SNP	NYAP1	ENST00000423930	human	ensembl	69_37n	+1	known	missense	c.1993	p.P665S	0.995	NULL	NULL	-	no_errors	NYAP1	HGNC	ENSG00000166924	32	0	0.00	18	6	25.00	-	-	-
ODZ1	0	genome.wustl.edu	37	X	123518516	123518516	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	X	123518516	123518516	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.6265	p.V2089I	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	336	0	0.00	127	64	33.51	-	-	-
PCDHA5	0	genome.wustl.edu	37	5	140203377	140203377	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	5	140203377	140203377	C	A	SNP	PCDHA5	ENST00000529859	human	ensembl	69_37n	+1	known	missense	c.2017	p.Q673K	0.073	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	26	0	0.00	30	8	21.05	-	-	-
PDGFRA	0	genome.wustl.edu	37	4	55141065	55141065	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	4	55141065	55141065	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	+1	known	missense	c.1711	p.E571K	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	123	0	0.00	78	25	24.27	-	-	-
PIEZO1	0	genome.wustl.edu	37	16	88799821	88799821	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	16	88799821	88799821	G	A	SNP	PIEZO1	ENST00000451779	human	ensembl	69_37n	-1	putative	missense	c.1076	p.S359L	0.994	NULL	pfam_DUF3595	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PIEZO1	HGNC	ENSG00000103335	13	0	0.00	16	5	23.81	-	-	-
PLCG1	0	genome.wustl.edu	37	20	39802138	39802138	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	20	39802138	39802138	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	+1	known	missense	c.3358	p.E1120K	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_C2_membr_targeting	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	209	0	0.00	143	18	11.18	-	-	-
PRKRIR	0	genome.wustl.edu	37	11	76062204	76062204	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	11	76062204	76062204	C	T	SNP	PRKRIR	ENST00000260045	human	ensembl	69_37n	-1	known	missense	c.1990	p.E664K	1.000	pfam_HATC,superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	231	0	0.00	152	25	14.12	-	-	-
SEC31B	0	genome.wustl.edu	37	10	102255183	102255183	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	10	102255183	102255183	C	G	SNP	SEC31B	ENST00000370345	human	ensembl	69_37n	-1	known	missense	c.2431	p.E811Q	0.283	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	121	0	0.00	98	15	13.27	-	-	-
SLCO5A1	0	genome.wustl.edu	37	8	70591657	70591657	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	8	70591657	70591657	G	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	missense	c.1980	p.F660L	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	307	0	0.00	322	38	10.53	-	-	-
TGFBR1	0	genome.wustl.edu	37	9	101900249	101900249	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	9	101900249	101900249	A	T	SNP	TGFBR1	ENST00000374994	human	ensembl	69_37n	+1	known	missense	c.683	p.E228V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799	267	0	0.00	243	53	17.85	-	-	-
TP53	0	genome.wustl.edu	37	17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	17	7577558	7577558	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.723	p.C242fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	138	0	0.00	53	23	30.26	-	-	-
TPO	0	genome.wustl.edu	37	2	1500429	1500429	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	2	1500429	1500429	G	A	SNP	TPO	ENST00000329066	human	ensembl	69_37n	+1	known	missense	c.2278	p.G760R	0.793	superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705	211	0	0.00	147	23	13.53	-	-	-
TRIM55	0	genome.wustl.edu	37	8	67040682	67040682	+	Silent	SNP	C	C	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	8	67040682	67040682	C	A	SNP	TRIM55	ENST00000315962	human	ensembl	69_37n	+1	known	silent	c.312	p.I104	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573	181	0	0.00	145	17	10.49	-	-	-
UPK2	0	genome.wustl.edu	37	11	118828354	118828354	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	11	118828354	118828354	G	C	SNP	UPK2	ENST00000264031	human	ensembl	69_37n	+1	known	missense	c.394	p.E132Q	0.316	pfam_Uroplakin_II,pirsf_Uroplakin_II	pfam_Uroplakin_II,pirsf_Uroplakin_II	-	no_errors	UPK2	HGNC	ENSG00000110375	201	0	0.00	170	23	11.92	-	-	-
VPS33A	0	genome.wustl.edu	37	12	122716807	122716807	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	12	122716807	122716807	C	G	SNP	VPS33A	ENST00000267199	human	ensembl	69_37n	-1	known	missense	c.1777	p.E593Q	1.000	superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719	250	1	0.40	219	29	11.69	-	-	-
ZNF157	0	genome.wustl.edu	37	X	47270116	47270116	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	X	47270116	47270116	G	C	SNP	ZNF157	ENST00000377073	human	ensembl	69_37n	+1	known	missense	c.237	p.L79F	1.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117	167	0	0.00	134	22	14.10	-	-	-
ZNF41	0	genome.wustl.edu	37	X	47307056	47307056	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12D-01A-11D-A10Y-09	TCGA-AO-A12D-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b3065cfe-3067-4f08-8c82-46f10c1ec279	d1f36155-9a05-4343-9a9a-c25286291304	X	47307056	47307056	G	A	SNP	ZNF41	ENST00000397050	human	ensembl	69_37n	-1	known	missense	c.2143	p.R715C	0.021	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124	223	0	0.00	195	31	13.66	-	-	-
