Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACACB	0	genome.wustl.edu	37	12	109675151	109675151	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	109675151	109675151	G	A	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	+1	known	missense	c.4628	p.R1543H	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	227	1	0.44	129	96	42.48	-	-	-
ACAD10	0	genome.wustl.edu	37	12	112186223	112186223	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	112186223	112186223	C	A	SNP	ACAD10	ENST00000455480	human	ensembl	69_37n	+1	known	missense	c.2681	p.T894N	0.970	superfamily_AcylCoA_DH/oxidase	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Dehalogen-like_hydro,superfamily_AcylCoA_DH/oxidase,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_Haloacid_DH/epoxide_hydro,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA_v3	-	no_errors	ACAD10	HGNC	ENSG00000111271	162	1	0.61	103	61	36.97	-	-	-
ACOT4	0	genome.wustl.edu	37	14	74058810	74058810	+	Silent	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	14	74058810	74058810	C	T	SNP	ACOT4	ENST00000326303	human	ensembl	69_37n	+1	known	silent	c.147	p.H49	0.999	pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT4	HGNC	ENSG00000177465	13	0	0.00	5	6	54.55	-	-	-
ADAMDEC1	0	genome.wustl.edu	37	8	24257811	24257811	+	Silent	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	8	24257811	24257811	G	A	SNP	ADAMDEC1	ENST00000256412	human	ensembl	69_37n	+1	known	silent	c.1140	p.L380	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028	174	0	0.00	109	73	39.89	-	-	-
ADRA1A	0	genome.wustl.edu	37	8	26721870	26721870	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	8	26721870	26721870	C	T	SNP	ADRA1A	ENST00000380586	human	ensembl	69_37n	-1	known	missense	c.617	p.R206H	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Adrene_rcpt_A1Cs,prints_7TM_GPCR_Rhodpsn,prints_Adrnrgc_rcpt	-	no_errors	ADRA1A	HGNC	ENSG00000120907	63	0	0.00	47	29	38.16	-	-	-
AKD1	0	genome.wustl.edu	37	6	109850252	109850252	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	109850252	109850252	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.3595	p.A1199T	1.000	smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	349	0	0.00	283	85	23.10	-	-	-
AMBRA1	0	genome.wustl.edu	37	11	46419289	46419289	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	46419289	46419289	G	T	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	missense	c.3608	p.T1203N	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	206	0	0.00	119	119	49.79	-	-	-
ARHGAP22	0	genome.wustl.edu	37	10	49701493	49701493	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	10	49701493	49701493	C	T	SNP	ARHGAP22	ENST00000417247	human	ensembl	69_37n	-1	known	missense	c.41	p.R14H	0.000	pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP22	HGNC	ENSG00000128805	15	0	0.00	7	5	41.67	-	-	-
ASXL2	0	genome.wustl.edu	37	2	25994378	25994378	+	Silent	SNP	T	T	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	25994378	25994378	T	C	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	silent	c.435	p.P145	0.816	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	532	0	0.00	244	254	51.00	-	-	-
ASXL3	0	genome.wustl.edu	37	18	31314340	31314340	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	18	31314340	31314340	C	T	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	+1	known	missense	c.1043	p.P348L	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	172	0	0.00	117	61	34.27	-	-	-
BANP	0	genome.wustl.edu	37	16	88098920	88098920	+	Silent	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	16	88098920	88098920	C	T	SNP	BANP	ENST00000286122	human	ensembl	69_37n	+1	known	silent	c.1326	p.F442	0.029	NULL	pfam_BEN_domain	-	no_errors	BANP	HGNC	ENSG00000172530	86	0	0.00	51	8	13.56	-	-	-
BCAN	0	genome.wustl.edu	37	1	156622540	156622540	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	156622540	156622540	G	T	SNP	BCAN	ENST00000329117	human	ensembl	69_37n	+1	known	missense	c.1798	p.A600S	0.264	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	BCAN	HGNC	ENSG00000132692	53	0	0.00	76	17	18.28	-	-	-
C6orf132	0	genome.wustl.edu	37	6	42074796	42074796	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	42074796	42074796	C	G	SNP	C6orf132	ENST00000341865	human	ensembl	69_37n	-1	putative	missense	c.854	p.G285A	0.128	NULL	NULL	-	no_errors	C6orf132	HGNC	ENSG00000188112	66	0	0.00	51	20	28.17	-	-	-
C6orf52	0	genome.wustl.edu	37	6	10671667	10671667	+	RNA	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	10671667	10671667	G	A	SNP	C6orf52	ENST00000467832	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C6orf52	HGNC	ENSG00000137434	192	0	0.00	111	93	45.59	-	-	-
C7orf10	0	genome.wustl.edu	37	7	40723677	40723677	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	7	40723677	40723677	G	C	SNP	C7orf10	ENST00000309930	human	ensembl	69_37n	+1	known	missense	c.1133	p.S378T	0.000	superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	C7orf10	HGNC	ENSG00000175600	353	0	0.00	316	79	20.00	-	-	-
CCP110	0	genome.wustl.edu	37	16	19556209	19556209	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	16	19556209	19556209	G	C	SNP	CCP110	ENST00000381396	human	ensembl	69_37n	+1	known	missense	c.2575	p.V859L	1.000	NULL	NULL	-	no_errors	CCP110	HGNC	ENSG00000103540	288	0	0.00	167	82	32.93	-	-	-
CDH6	0	genome.wustl.edu	37	5	31267600	31267600	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	5	31267600	31267600	T	G	SNP	CDH6	ENST00000265071	human	ensembl	69_37n	+1	known	missense	c.20	p.F7C	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361	82	0	0.00	30	28	48.28	-	-	-
CFHR1	0	genome.wustl.edu	37	1	196800996	196800996	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	196800996	196800996	A	G	SNP	CFHR1	ENST00000320493	human	ensembl	69_37n	+1	known	missense	c.860	p.K287R	0.003	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR1	HGNC	ENSG00000244414	580	0	0.00	306	322	51.27	-	-	-
CLDN23	0	genome.wustl.edu	37	8	8560424	8560424	+	Silent	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	8	8560424	8560424	G	T	SNP	CLDN23	ENST00000519106	human	ensembl	69_37n	+1	known	silent	c.516	p.L172	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN23	HGNC	ENSG00000253958	11	0	0.00	5	7	58.33	-	-	-
CNOT10	0	genome.wustl.edu	37	3	32754743	32754744	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	32754743	32754744	-	T	INS	CNOT10	ENST00000454516	human	ensembl	69_37n	+1	known	frame_shift_ins	c.635_636	p.L214fs	1.000:1.000	NULL	pfam_TPR-1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973	375	0	0.00	111	333	75.00	-	-	-
CNTN6	0	genome.wustl.edu	37	3	1320096	1320096	+	Splice_Site	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	1320096	1320096	G	T	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	+1	known	splice_site	c.359-1	e4-1	1.000	-	-	-	no_errors	CNTN6	HGNC	ENSG00000134115	155	0	0.00	69	55	44.35	-	-	-
COL6A5	0	genome.wustl.edu	37	3	130187808	130187808	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	130187808	130187808	C	T	SNP	COL6A5	ENST00000512836	human	ensembl	69_37n	+1	putative	missense	c.1714	p.L572F	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	COL6A5	HGNC	ENSG00000172752	285	1	0.35	50	122	70.93	-	-	-
CXorf23	0	genome.wustl.edu	37	X	19971133	19971133	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	X	19971133	19971133	T	C	SNP	CXorf23	ENST00000340625	human	ensembl	69_37n	-1	known	missense	c.427	p.T143A	0.999	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CXorf23	HGNC	ENSG00000173681	237	0	0.00	176	118	40.14	-	-	-
CYP4F11	0	genome.wustl.edu	37	19	16038292	16038292	+	Silent	SNP	A	A	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	16038292	16038292	A	T	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	silent	c.345	p.A115	0.613	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	151	0	0.00	89	80	46.78	-	-	-
DKKL1	0	genome.wustl.edu	37	19	49869131	49869131	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	49869131	49869131	G	T	SNP	DKKL1	ENST00000221498	human	ensembl	69_37n	+1	known	missense	c.406	p.G136C	0.031	NULL	NULL	-	no_errors	DKKL1	HGNC	ENSG00000104901	206	0	0.00	137	79	36.57	-	-	-
DNAH17	0	genome.wustl.edu	37	17	76423090	76423090	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	17	76423090	76423090	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	69_37n	-1	known	missense	c.12757	p.V4253F	1.000	pfam_Dynein_heavy	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	126	0	0.00	84	30	26.32	-	-	-
DPCR1	0	genome.wustl.edu	37	6	30919364	30919364	+	Silent	SNP	T	T	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	30919364	30919364	T	C	SNP	DPCR1	ENST00000462446	human	ensembl	69_37n	+1	novel	silent	c.3123	p.P1041	0.001	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631	675	0	0.00	632	104	14.09	-	-	-
ENAH	0	genome.wustl.edu	37	1	225742665	225742665	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	225742665	225742665	T	C	SNP	ENAH	ENST00000366844	human	ensembl	69_37n	-1	known	missense	c.292	p.N98D	1.000	pfam_EVH1,smart_EVH1,pfscan_EVH1	pfam_EVH1,pfam_VASP_tetra,smart_EVH1,pfscan_EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	294	0	0.00	188	147	43.88	-	-	-
FAM193B	0	genome.wustl.edu	37	5	176964948	176964948	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	5	176964948	176964948	G	-	DEL	FAM193B	ENST00000443375	human	ensembl	69_37n	-1	known	frame_shift_del	c.275	p.S92fs	1.000	NULL	NULL	-	no_errors	FAM193B	HGNC	ENSG00000146067	154	0	0.00	31	58	59.18	-	-	-
FAM207A	0	genome.wustl.edu	37	21	46380034	46380034	+	Silent	SNP	T	T	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	21	46380034	46380034	T	C	SNP	FAM207A	ENST00000291634	human	ensembl	69_37n	+1	known	silent	c.303	p.V101	0.001	NULL	NULL	-	no_errors	FAM207A	HGNC	ENSG00000160256	177	0	0.00	158	45	22.17	-	-	-
FAM210A	0	genome.wustl.edu	37	18	13681832	13681832	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	18	13681832	13681832	C	G	SNP	FAM210A	ENST00000322247	human	ensembl	69_37n	-1	known	missense	c.245	p.R82P	0.000	NULL	pfam_DUF1279	-	no_errors	FAM210A	HGNC	ENSG00000177150	448	0	0.00	298	215	41.91	-	-	-
HEATR7B2	0	genome.wustl.edu	37	5	41048471	41048471	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	5	41048471	41048471	C	G	SNP	HEATR7B2	ENST00000399564	human	ensembl	69_37n	-1	known	missense	c.1639	p.D547H	0.952	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B2	HGNC	ENSG00000171495	348	0	0.00	146	128	46.55	-	-	-
ING1	0	genome.wustl.edu	37	13	111371953	111371953	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	13	111371953	111371953	G	T	SNP	ING1	ENST00000375774	human	ensembl	69_37n	+1	known	missense	c.943	p.A315S	0.976	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	48	0	0.00	10	33	76.74	-	-	-
INPP5D	0	genome.wustl.edu	37	2	233925287	233925287	+	Silent	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	233925287	233925287	C	T	SNP	INPP5D	ENST00000359570	human	ensembl	69_37n	+1	known	silent	c.99	p.S33	0.991	pfam_SH2,smart_SH2,prints_SH2,pfscan_SH2	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,prints_SH2,pfscan_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918	42	0	0.00	33	27	45.00	-	-	-
ITPR2	0	genome.wustl.edu	37	12	26580852	26580852	+	Silent	SNP	T	T	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	26580852	26580852	T	G	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	silent	c.6939	p.A2313	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	198	0	0.00	645	96	12.96	-	-	-
KCNH1	0	genome.wustl.edu	37	1	210857058	210857058	+	Silent	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	210857058	210857058	C	A	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	silent	c.2535	p.G845	0.033	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	88	0	0.00	78	15	15.96	-	-	-
KHSRP	0	genome.wustl.edu	37	19	6415313	6415314	+	Splice_Site	INS	-	-	TG			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	6415313	6415314	-	TG	INS	KHSRP	ENST00000398148	human	ensembl	69_37n	-1	known	splice_site_ins	c.1967-2_1967-1	e19-1	0.989:0.952	-	-	-	no_errors	KHSRP	HGNC	ENSG00000088247	33	0	0.00	33	15	31.25	-	-	-
KIAA1324L	0	genome.wustl.edu	37	7	86522367	86522367	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	7	86522367	86522367	G	T	SNP	KIAA1324L	ENST00000450689	human	ensembl	69_37n	-1	known	missense	c.2735	p.S912Y	1.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt	-	no_errors	KIAA1324L	HGNC	ENSG00000164659	160	0	0.00	95	86	47.51	-	-	-
L1CAM	0	genome.wustl.edu	37	X	153130155	153130155	+	Silent	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	X	153130155	153130155	G	T	SNP	L1CAM	ENST00000543994	human	ensembl	69_37n	-1	known	silent	c.3057	p.I1019	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	L1CAM	HGNC	ENSG00000198910	132	0	0.00	93	34	26.77	-	-	-
LRP2	0	genome.wustl.edu	37	2	170063595	170063595	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	170063595	170063595	C	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.6635	p.R2212I	0.695	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	188	0	0.00	109	60	35.29	-	-	-
MDGA1	0	genome.wustl.edu	37	6	37614094	37614094	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	37614094	37614094	G	T	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.2113	p.Q705K	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	122	0	0.00	99	54	35.06	-	-	-
MEF2B	0	genome.wustl.edu	37	19	19258546	19258546	+	Silent	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	19258546	19258546	G	A	SNP	MEF2B	ENST00000162023	human	ensembl	69_37n	-1	known	silent	c.354	p.G118	0.321	NULL	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2B	HGNC	ENSG00000213999	83	0	0.00	55	29	26.61	-	-	-
MRPL20	0	genome.wustl.edu	37	1	1337585	1337585	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	1337585	1337585	G	A	SNP	MRPL20	ENST00000344843	human	ensembl	69_37n	-1	known	missense	c.328	p.P110S	1.000	pfam_Ribosomal_L20,tigrfam_Ribosomal_L20	pfam_Ribosomal_L20,prints_Ribosomal_L20,tigrfam_Ribosomal_L20	-	no_errors	MRPL20	HGNC	ENSG00000242485	109	0	0.00	206	57	21.59	-	-	-
MUC16	0	genome.wustl.edu	37	19	9070668	9070668	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	9070668	9070668	G	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.16778	p.T5593N	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	363	0	0.00	212	163	43.35	-	-	-
MYD88	0	genome.wustl.edu	37	3	38180431	38180431	+	Silent	SNP	A	A	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	38180431	38180431	A	T	SNP	MYD88	ENST00000417037	human	ensembl	69_37n	+1	known	silent	c.279	p.G93	0.801	pfam_Death,superfamily_DEATH-like,smart_Death,pirsf_Myelin_different_resp_MyD88,pfscan_Death	pfam_TIR_dom,pfam_Death,superfamily_DEATH-like,superfamily_TIR_dom,smart_Death,smart_TIR_dom,pirsf_Myelin_different_resp_MyD88,pfscan_Death,pfscan_TIR_dom	-	no_errors	MYD88	HGNC	ENSG00000172936	35	0	0.00	14	6	27.27	-	-	-
MYH14	0	genome.wustl.edu	37	19	50713890	50713890	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	50713890	50713890	C	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	+1	known	nonsense	c.268	p.R90*	1.000	pfam_Myosin_N	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	22	0	0.00	10	9	47.37	-	-	-
MYH7B	0	genome.wustl.edu	37	20	33577724	33577724	+	Splice_Site	SNP	T	T	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	20	33577724	33577724	T	C	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	+1	novel	splice_site	c.1893+2	e18+2	1.000	-	-	-	no_errors	MYH7B	HGNC	ENSG00000078814	85	0	0.00	57	38	40.00	-	-	-
NBAS	0	genome.wustl.edu	37	2	15432702	15432702	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	15432702	15432702	T	A	SNP	NBAS	ENST00000442506	human	ensembl	69_37n	-1	novel	missense	c.2129	p.Q710L	0.000	NULL	pfam_Sec39	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBAS	HGNC	ENSG00000151779	186	0	0.00	53	472	89.90	-	-	-
NDUFS2	0	genome.wustl.edu	37	1	161179917	161179917	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	161179917	161179917	T	G	SNP	NDUFS2	ENST00000367993	human	ensembl	69_37n	+1	known	missense	c.719	p.L240R	0.998	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	pfam_NADH_Q_OxRdtase_suD,tigrfam_NADH_DH_1_suD	-	no_errors	NDUFS2	HGNC	ENSG00000158864	210	0	0.00	163	133	44.93	-	-	-
NEB	0	genome.wustl.edu	37	2	152507244	152507244	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	152507244	152507244	G	T	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	missense	c.7071	p.F2357L	0.042	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	315	1	0.32	171	124	42.03	-	-	-
NR0B2	0	genome.wustl.edu	37	1	27240275	27240275	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	27240275	27240275	G	C	SNP	NR0B2	ENST00000254227	human	ensembl	69_37n	-1	known	missense	c.157	p.H53D	0.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	-	no_errors	NR0B2	HGNC	ENSG00000131910	14	0	0.00	4	6	60.00	-	-	-
NSUN3	0	genome.wustl.edu	37	3	93845211	93845211	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	93845211	93845211	C	G	SNP	NSUN3	ENST00000314622	human	ensembl	69_37n	+1	known	missense	c.900	p.H300Q	0.688	NULL	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN3	HGNC	ENSG00000178694	161	0	0.00	28	54	65.85	-	-	-
OPRM1	0	genome.wustl.edu	37	6	154412347	154412347	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	154412347	154412347	G	C	SNP	OPRM1	ENST00000434900	human	ensembl	69_37n	+1	known	missense	c.1183	p.V395L	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Neuropept_W_rcpt,prints_P2_purnocptor	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mu_opioid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_W_rcpt,prints_P2_purnocptor,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038	335	0	0.00	391	157	28.65	-	-	-
OR4C15	0	genome.wustl.edu	37	11	55321983	55321983	+	Silent	SNP	G	G	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	55321983	55321983	G	C	SNP	OR4C15	ENST00000314644	human	ensembl	69_37n	+1	known	silent	c.201	p.L67	0.679	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939	191	0	0.00	113	85	42.71	-	-	-
OSBPL1A	0	genome.wustl.edu	37	18	21745043	21745043	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	18	21745043	21745043	C	G	SNP	OSBPL1A	ENST00000319481	human	ensembl	69_37n	-1	known	missense	c.2736	p.E912D	0.998	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt	-	no_errors	OSBPL1A	HGNC	ENSG00000141447	649	0	0.00	549	122	18.18	-	-	-
PCDHA9	0	genome.wustl.edu	37	5	140230439	140230439	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	5	140230439	140230439	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	69_37n	+1	known	missense	c.2359	p.G787R	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961	119	0	0.00	14	48	77.42	-	-	-
PEG3	0	genome.wustl.edu	37	19	57286770	57286770	+	Silent	SNP	T	T	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	57286770	57286770	T	C	SNP	PEG3	ENST00000221722	human	ensembl	69_37n	-1	known	silent	c.870	p.R290	0.000	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	PEG3	HGNC	ENSG00000198300	300	1	0.33	211	100	32.15	-	-	-
PLXNA2	0	genome.wustl.edu	37	1	208216496	208216496	+	Silent	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	208216496	208216496	G	T	SNP	PLXNA2	ENST00000367033	human	ensembl	69_37n	-1	known	silent	c.3927	p.R1309	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA2	HGNC	ENSG00000076356	164	0	0.00	107	65	37.79	-	-	-
POU3F4	0	genome.wustl.edu	37	X	82763506	82763506	+	Silent	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	X	82763506	82763506	G	T	SNP	POU3F4	ENST00000373200	human	ensembl	69_37n	+1	known	silent	c.174	p.V58	1.000	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pirsf_Transcription_factor_POU,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	46	0	0.00	27	13	32.50	-	-	-
PPEF1	0	genome.wustl.edu	37	X	18822127	18822127	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	X	18822127	18822127	C	A	SNP	PPEF1	ENST00000361511	human	ensembl	69_37n	+1	known	missense	c.1183	p.Q395K	0.034	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr-Pase_EF-hand_contain,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,pfam_EF-hand,pfam_PPP_dom,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_Ca-bd,pirsf_Ser/Thr-Pase_EF-hand_contain,pfscan_EF_HAND_2,pfscan_IQ_motif_EF-hand-BS,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPEF1	HGNC	ENSG00000086717	447	0	0.00	251	164	39.42	-	-	-
PRKCE	0	genome.wustl.edu	37	2	46234725	46234725	+	Silent	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	46234725	46234725	G	A	SNP	PRKCE	ENST00000306156	human	ensembl	69_37n	+1	known	silent	c.1188	p.R396	1.000	superfamily_Kinase-like_dom,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	79	0	0.00	46	12	20.69	-	-	-
PSG7	0	genome.wustl.edu	37	19	43433600	43433600	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	19	43433600	43433600	G	T	SNP	PSG7	ENST00000406070	human	ensembl	69_37n	-1	known	missense	c.703	p.L235I	0.509	NULL	NULL	-	pseudogene	PSG7	HGNC	ENSG00000221878	304	0	0.00	168	129	43.29	-	-	-
PTPRO	0	genome.wustl.edu	37	12	15673153	15673153	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	15673153	15673153	C	A	SNP	PTPRO	ENST00000281171	human	ensembl	69_37n	+1	known	missense	c.1798	p.P600T	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	143	0	0.00	21	55	72.37	-	-	-
PUS10	0	genome.wustl.edu	37	2	61175203	61175203	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	61175203	61175203	G	C	SNP	PUS10	ENST00000316752	human	ensembl	69_37n	-1	known	missense	c.1426	p.L476V	1.000	superfamily_PsdUridine_synth_cat_dom	superfamily_PsdUridine_synth_cat_dom	-	no_errors	PUS10	HGNC	ENSG00000162927	219	1	0.45	143	94	39.66	-	-	-
RNA5SP301	0	genome.wustl.edu	37	10	13769842	13769842	+	RNA	SNP	A	A	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	10	13769842	13769842	A	G	SNP	RNA5SP301	ENST00000362537	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNA5SP301	HGNC	ENSG00000199407	11	0	0.00	3	7	70.00	-	-	-
RNF182	0	genome.wustl.edu	37	6	13977498	13977498	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	13977498	13977498	A	C	SNP	RNF182	ENST00000488300	human	ensembl	69_37n	+1	known	missense	c.148	p.K50Q	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF182	HGNC	ENSG00000180537	242	0	0.00	279	98	25.99	-	-	-
RPS6KA4	0	genome.wustl.edu	37	11	64137029	64137029	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	64137029	64137029	G	A	SNP	RPS6KA4	ENST00000334205	human	ensembl	69_37n	+1	known	missense	c.1540	p.V514M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA4	HGNC	ENSG00000162302	13	0	0.00	4	7	63.64	-	-	-
SCN10A	0	genome.wustl.edu	37	3	38768529	38768529	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	3	38768529	38768529	G	T	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.2655	p.F885L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	134	0	0.00	13	70	84.34	-	-	-
SCN4A	0	genome.wustl.edu	37	17	62034711	62034711	+	Silent	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	17	62034711	62034711	G	A	SNP	SCN4A	ENST00000435607	human	ensembl	69_37n	-1	known	silent	c.2187	p.C729	0.981	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN4A	HGNC	ENSG00000007314	184	0	0.00	116	100	46.30	-	-	-
SIRT5	0	genome.wustl.edu	37	6	13599264	13599264	+	Silent	SNP	G	G	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	13599264	13599264	G	C	SNP	SIRT5	ENST00000379250	human	ensembl	69_37n	+1	known	silent	c.618	p.R206	1.000	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT5	HGNC	ENSG00000124523	105	0	0.00	117	46	28.22	-	-	-
SLC27A4	0	genome.wustl.edu	37	9	131105549	131105549	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	9	131105549	131105549	C	A	SNP	SLC27A4	ENST00000372870	human	ensembl	69_37n	+1	known	missense	c.220	p.Q74K	0.968	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114	163	0	0.00	23	78	77.23	-	-	-
SLC47A1	0	genome.wustl.edu	37	17	19452969	19452969	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	17	19452969	19452969	G	A	SNP	SLC47A1	ENST00000571335	human	ensembl	69_37n	+1	novel	missense	c.32	p.R11Q	0.913	NULL	pfam_MATE	-	no_errors	SLC47A1	HGNC	ENSG00000142494	361	0	0.00	57	131	69.68	-	-	-
SND1	0	genome.wustl.edu	37	7	127731927	127731927	+	Silent	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	7	127731927	127731927	C	T	SNP	SND1	ENST00000354725	human	ensembl	69_37n	+1	known	silent	c.2661	p.S887	0.884	pfam_Staphylococcal_nuclease,superfamily_Staphylococal_nuclease_OB-fold,pirsf_Silence_cplx_Nase-comp_TudorSN	pfam_Staphylococcal_nuclease,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococcal_nuclease,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococcal_nuclease	-	no_errors	SND1	HGNC	ENSG00000197157	458	0	0.00	250	225	47.17	-	-	-
SOX12	0	genome.wustl.edu	37	20	307342	307342	+	Silent	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	20	307342	307342	G	T	SNP	SOX12	ENST00000342665	human	ensembl	69_37n	+1	known	silent	c.774	p.L258	0.997	pirsf_SOX-12/11/4a	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pirsf_SOX-12/11/4a,pfscan_HMG_superfamily	-	no_errors	SOX12	HGNC	ENSG00000177732	8	0	0.00	5	5	50.00	-	-	-
SVOP	0	genome.wustl.edu	37	12	109372367	109372367	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	109372367	109372367	G	T	SNP	SVOP	ENST00000299134	human	ensembl	69_37n	-1	known	missense	c.73	p.L25M	0.999	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SVOP	HGNC	ENSG00000166111	84	0	0.00	69	57	45.24	-	-	-
SYNE1	0	genome.wustl.edu	37	6	152639373	152639373	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	152639373	152639373	C	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.16415	p.C5472F	0.999	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	327	0	0.00	328	137	29.46	-	-	-
SYNE1	0	genome.wustl.edu	37	6	152716678	152716678	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	152716678	152716678	A	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.7685	p.M2562K	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	462	0	0.00	557	124	18.21	-	-	-
TIPIN	0	genome.wustl.edu	37	15	66644500	66644500	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	15	66644500	66644500	A	G	SNP	TIPIN	ENST00000261881	human	ensembl	69_37n	-1	known	missense	c.179	p.V60A	1.000	NULL	pfam_Swi3	-	no_errors	TIPIN	HGNC	ENSG00000075131	251	0	0.00	46	113	71.07	-	-	-
TLL1	0	genome.wustl.edu	37	4	166913988	166913988	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	4	166913988	166913988	C	T	SNP	TLL1	ENST00000061240	human	ensembl	69_37n	+1	known	nonsense	c.313	p.R105*	1.000	pirsf_BMP_1/tolloid-like	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295	456	0	0.00	58	183	75.62	-	-	-
TLL2	0	genome.wustl.edu	37	10	98146742	98146742	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	10	98146742	98146742	T	C	SNP	TLL2	ENST00000357947	human	ensembl	69_37n	-1	known	missense	c.1820	p.Y607C	0.987	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_EG-like_dom	pfam_CUB,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd,superfamily_CUB,smart_Peptidase_Metallo,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_BMP_1/tolloid-like,pfscan_CUB,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL2	HGNC	ENSG00000095587	103	0	0.00	19	34	64.15	-	-	-
TM2D2	0	genome.wustl.edu	37	8	38852949	38852951	+	In_Frame_Del	DEL	ATC	ATC	-			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	8	38852949	38852951	ATC	-	DEL	TM2D2	ENST00000397070	human	ensembl	69_37n	-1	known	in_frame_del	c.74_72	p.M24in_frame_del	0.000:0.000:0.000	NULL	pfam_TM2	-	no_errors	TM2D2	HGNC	ENSG00000169490	331	0	0.00	232	121	34.28	-	-	-
TMEM132C	0	genome.wustl.edu	37	12	129178526	129178526	+	Silent	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	129178526	129178526	C	T	SNP	TMEM132C	ENST00000435159	human	ensembl	69_37n	+1	known	silent	c.1602	p.D534	1.000	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234	75	0	0.00	48	26	35.14	-	-	-
TNRC6A	0	genome.wustl.edu	37	16	24801817	24801817	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	16	24801817	24801817	C	A	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	+1	known	missense	c.1854	p.N618K	0.995	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	227	1	0.44	120	93	43.66	-	-	-
TP53	0	genome.wustl.edu	37	17	7579364	7579365	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	17	7579364	7579365	CC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.323_322	p.G108fs	0.910:0.925	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	57	0	0.00	8	22	68.75	-	-	-
UGT1A10	0	genome.wustl.edu	37	2	234545725	234545725	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	2	234545725	234545725	C	T	SNP	UGT1A10	ENST00000344644	human	ensembl	69_37n	+1	known	missense	c.557	p.P186L	0.720	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A10	HGNC	ENSG00000242515	496	0	0.00	321	231	41.85	-	-	-
UGT2B15	0	genome.wustl.edu	37	4	69536304	69536304	+	Silent	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	4	69536304	69536304	C	A	SNP	UGT2B15	ENST00000338206	human	ensembl	69_37n	-1	known	silent	c.33	p.L11	0.997	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620	208	1	0.48	34	81	70.43	-	-	-
UNC93B1	0	genome.wustl.edu	37	11	67766699	67766699	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	67766699	67766699	C	A	SNP	UNC93B1	ENST00000227471	human	ensembl	69_37n	-1	known	missense	c.631	p.G211C	1.000	NULL	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93B1	HGNC	ENSG00000110057	50	0	0.00	54	13	19.40	-	-	-
USH2A	0	genome.wustl.edu	37	1	216371845	216371845	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	1	216371845	216371845	T	G	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.3893	p.Q1298P	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	260	1	0.38	193	135	41.03	-	-	-
VIPR2	0	genome.wustl.edu	37	7	158902573	158902573	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	7	158902573	158902573	C	T	SNP	VIPR2	ENST00000418475	human	ensembl	69_37n	-1	putative	missense	c.175	p.A59T	0.963	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_VIP_rcpt_2	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_VIP_rcpt,prints_GPCR_2_VIP_rcpt_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VIPR2	HGNC	ENSG00000106018	82	0	0.00	53	32	28.32	-	-	-
VNN2	0	genome.wustl.edu	37	6	133078858	133078858	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	6	133078858	133078858	G	C	SNP	VNN2	ENST00000326499	human	ensembl	69_37n	-1	known	missense	c.165	p.N55K	1.000	pirsf_Biotinidase_euk,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303	304	0	0.00	201	135	40.06	-	-	-
WNK2	0	genome.wustl.edu	37	9	96051807	96051807	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	9	96051807	96051807	G	C	SNP	WNK2	ENST00000297954	human	ensembl	69_37n	+1	known	missense	c.4882	p.D1628H	0.088	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK2	HGNC	ENSG00000165238	27	0	0.00	3	7	70.00	-	-	-
WNT10B	0	genome.wustl.edu	37	12	49362067	49362067	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	12	49362067	49362067	C	T	SNP	WNT10B	ENST00000301061	human	ensembl	69_37n	-1	known	missense	c.373	p.A125T	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10B	HGNC	ENSG00000169884	133	0	0.00	22	56	71.79	-	-	-
ZNF214	0	genome.wustl.edu	37	11	7021508	7021508	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	11	7021508	7021508	G	A	SNP	ZNF214	ENST00000278314	human	ensembl	69_37n	-1	known	missense	c.1406	p.P469L	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050	311	0	0.00	171	119	41.03	-	-	-
ZNF598	0	genome.wustl.edu	37	16	2050140	2050140	+	Silent	SNP	C	C	A			TCGA-AR-A1AH-01A-11D-A12B-09	TCGA-AR-A1AH-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ff4a0f5a-9f30-4a2b-9915-62f2df5ad155	430fb469-2c87-469e-8d23-0473caeefab3	16	2050140	2050140	C	A	SNP	ZNF598	ENST00000431526	human	ensembl	69_37n	-1	known	silent	c.1410	p.P470	0.000	NULL	superfamily_PAH,smart_Znf_C2H2-like,pfscan_Znf_RING	-	no_errors	ZNF598	HGNC	ENSG00000167962	12	0	0.00	7	9	56.25	-	-	-
