Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ATF3	0	genome.wustl.edu	37	1	212792849	212792849	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	1	212792849	212792849	G	C	SNP	ATF3	ENST00000341491	human	ensembl	69_37n	+1	known	missense	c.498	p.E166D	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	ATF3	HGNC	ENSG00000162772	100	0	0.00	152	20	11.63	-	-	-
BCORL1	0	genome.wustl.edu	37	X	129189983	129189983	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	129189983	129189983	G	A	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	+1	known	missense	c.5230	p.E1744K	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	67	0	0.00	53	18	25.35	-	-	-
CCDC24	0	genome.wustl.edu	37	1	44458238	44458238	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	1	44458238	44458238	C	T	SNP	CCDC24	ENST00000372318	human	ensembl	69_37n	+1	known	missense	c.346	p.H116Y	0.998	NULL	NULL	-	no_errors	CCDC24	HGNC	ENSG00000159214	336	0	0.00	304	120	28.30	-	-	-
COL24A1	0	genome.wustl.edu	37	1	86591291	86591291	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	1	86591291	86591291	C	T	SNP	COL24A1	ENST00000370571	human	ensembl	69_37n	-1	known	missense	c.728	p.R243H	0.069	superfamily_ConA-like_lec_gl	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502	147	0	0.00	103	45	30.41	-	-	-
HCFC1	0	genome.wustl.edu	37	X	153219074	153219074	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	153219074	153219074	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	69_37n	-1	known	missense	c.4481	p.P1494L	0.996	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	39	0	0.00	31	12	27.91	-	-	-
HCN1	0	genome.wustl.edu	37	5	45262056	45262056	+	Silent	SNP	G	G	A			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	5	45262056	45262056	G	A	SNP	HCN1	ENST00000303230	human	ensembl	69_37n	-1	known	silent	c.2640	p.D880	0.746	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	120	0	0.00	103	32	23.70	-	-	-
MAGEB16	0	genome.wustl.edu	37	X	35820757	35820757	+	Silent	SNP	G	G	A			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	35820757	35820757	G	A	SNP	MAGEB16	ENST00000399992	human	ensembl	69_37n	+1	known	silent	c.540	p.E180	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023	200	0	0.00	105	50	32.26	-	-	-
MAGEE2	0	genome.wustl.edu	37	X	75004102	75004102	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	75004102	75004102	G	C	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.785	p.T262R	0.977	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	115	0	0.00	89	35	28.23	-	-	-
MPDZ	0	genome.wustl.edu	37	9	13224396	13224396	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	9	13224396	13224396	G	C	SNP	MPDZ	ENST00000319217	human	ensembl	69_37n	-1	known	missense	c.370	p.Q124E	1.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	312	0	0.00	245	102	29.39	-	-	-
OR2A1	0	genome.wustl.edu	37	7	144015463	144015463	+	Silent	SNP	G	G	A			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	7	144015463	144015463	G	A	SNP	OR2A1	ENST00000408951	human	ensembl	69_37n	+1	known	silent	c.246	p.A82	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2A1	HGNC	ENSG00000221970	96	0	0.00	112	28	20.00	-	-	-
POU2F3	0	genome.wustl.edu	37	11	120180259	120180259	+	Silent	SNP	C	C	T			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	11	120180259	120180259	C	T	SNP	POU2F3	ENST00000543440	human	ensembl	69_37n	+1	known	silent	c.1038	p.A346	0.731	NULL	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F3	HGNC	ENSG00000137709	138	0	0.00	90	42	31.82	-	-	-
PPAN-P2RY11	0	genome.wustl.edu	37	19	10221623	10221623	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	19	10221623	10221623	C	G	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	69_37n	+1	known	missense	c.1204	p.L402V	0.996	NULL	pfam_Brix,pfam_7TM_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207	41	0	0.00	31	19	38.00	-	-	-
PRCP	0	genome.wustl.edu	37	11	82561013	82561013	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	11	82561013	82561013	G	A	SNP	PRCP	ENST00000393399	human	ensembl	69_37n	-1	known	missense	c.757	p.H253Y	0.001	pfam_Peptidase_S28	pfam_Peptidase_S28	-	no_errors	PRCP	HGNC	ENSG00000137509	126	0	0.00	111	38	25.50	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36252880	36252880	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	21	36252880	36252880	A	G	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.482	p.L161P	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	273	0	0.00	202	73	26.55	-	-	-
TP53	0	genome.wustl.edu	37	17	7579359	7579359	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	17	7579359	7579359	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.328	p.R110fs	0.028	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	58	0	0.00	24	9	27.27	-	-	-
TSR2	0	genome.wustl.edu	37	X	54470525	54470525	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	54470525	54470525	C	G	SNP	TSR2	ENST00000375151	human	ensembl	69_37n	+1	known	missense	c.349	p.Q117E	0.993	NULL	pfam_Pre-rRNA_process_TSR2	-	no_errors	TSR2	HGNC	ENSG00000158526	206	0	0.00	143	49	25.52	-	-	-
UNC13A	0	genome.wustl.edu	37	19	17760329	17760329	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	19	17760329	17760329	C	T	SNP	UNC13A	ENST00000428389	human	ensembl	69_37n	-1	known	missense	c.1771	p.V591M	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	282	0	0.00	209	71	25.36	-	-	-
WWP2	0	genome.wustl.edu	37	16	69832690	69832690	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	16	69832690	69832690	G	A	SNP	WWP2	ENST00000356003	human	ensembl	69_37n	+1	known	missense	c.176	p.R59H	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	265	1	0.38	129	67	34.18	-	-	-
