Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AASDHPPT	0	genome.wustl.edu	37	11	105948464	105948464	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	105948464	105948464	C	G	SNP	AASDHPPT	ENST00000278618	human	ensembl	69_37n	+1	known	missense	c.27	p.C9W	0.047	NULL	pfam_4-PPantetheinyl_Trfase,superfamily_4-PPantetheinyl_Trfase	-	no_errors	AASDHPPT	HGNC	ENSG00000149313	118	0	0.00	81	26	24.30	-	-	-
ABCA12	0	genome.wustl.edu	37	2	215843156	215843156	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	215843156	215843156	T	-	DEL	ABCA12	ENST00000272895	human	ensembl	69_37n	-1	known	frame_shift_del	c.5012	p.N1671fs	0.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	404	0	0.00	245	199	44.52	-	-	-
ABCC8	0	genome.wustl.edu	37	11	17498260	17498260	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	17498260	17498260	G	A	SNP	ABCC8	ENST00000302539	human	ensembl	69_37n	-1	known	missense	c.64	p.L22F	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Surea_rcpt-1,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC8	HGNC	ENSG00000006071	30	0	0.00	27	6	18.18	-	-	-
AP5B1	0	genome.wustl.edu	37	11	65545388	65545391	+	Frame_Shift_Del	DEL	TCGG	TCGG	-			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	TCGG	TCGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	65545388	65545391	TCGG	-	DEL	AP5B1	ENST00000532090	human	ensembl	69_37n	-1	novel	frame_shift_del	c.2576_2573	p.T858fs	0.358:0.353:0.075:0.964	NULL	NULL	-	no_errors	AP5B1	HGNC	ENSG00000254470	16	0	0.00	13	4	23.53	-	-	-
APOBEC2	0	genome.wustl.edu	37	6	41029366	41029367	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	41029366	41029367	-	CC	INS	APOBEC2	ENST00000244669	human	ensembl	69_37n	+1	known	frame_shift_ins	c.431_432	p.L145fs	1.000:1.000	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC2	HGNC	ENSG00000124701	103	0	0.00	152	20	11.63	-	-	-
ATG2B	0	genome.wustl.edu	37	14	96779679	96779679	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	14	96779679	96779679	C	A	SNP	ATG2B	ENST00000359933	human	ensembl	69_37n	-1	known	missense	c.3736	p.A1246S	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	163	0	0.00	61	31	33.70	-	-	-
ATN1	0	genome.wustl.edu	37	12	7048007	7048007	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	12	7048007	7048007	C	T	SNP	ATN1	ENST00000356654	human	ensembl	69_37n	+1	known	missense	c.2881	p.H961Y	0.614	pfam_Atrophin-like	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676	29	0	0.00	22	8	26.67	-	-	-
BACH1	0	genome.wustl.edu	37	21	30699407	30699407	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	21	30699407	30699407	C	T	SNP	BACH1	ENST00000286800	human	ensembl	69_37n	+1	known	missense	c.1262	p.A421V	0.951	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH1	HGNC	ENSG00000156273	114	0	0.00	123	41	25.00	-	-	-
CCPG1	0	genome.wustl.edu	37	15	55681620	55681620	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	15	55681620	55681620	C	G	SNP	CCPG1	ENST00000310958	human	ensembl	69_37n	-1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	203	0	0.00	81	24	22.86	-	-	-
CNPY3	0	genome.wustl.edu	37	6	42906359	42906359	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	42906359	42906359	G	C	SNP	CNPY3	ENST00000372836	human	ensembl	69_37n	+1	known	missense	c.667	p.G223R	0.997	NULL	pfam_DUF3456	-	no_errors	CNPY3	HGNC	ENSG00000137161	217	0	0.00	299	49	14.04	-	-	-
CORO7	0	genome.wustl.edu	37	16	4458194	4458194	+	Silent	SNP	C	C	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	16	4458194	4458194	C	A	SNP	CORO7	ENST00000572467	human	ensembl	69_37n	-1	known	silent	c.291	p.S97	0.226	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_Protein_transpt,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7	HGNC	ENSG00000103426	114	0	0.00	130	26	14.53	-	-	-
DCC	0	genome.wustl.edu	37	18	50985621	50985621	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	18	50985621	50985621	G	A	SNP	DCC	ENST00000442544	human	ensembl	69_37n	+1	known	missense	c.3412	p.A1138T	0.998	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DCC	HGNC	ENSG00000187323	103	0	0.00	76	18	19.15	-	-	-
DNAH7	0	genome.wustl.edu	37	2	196749476	196749476	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	196749476	196749476	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	69_37n	-1	known	nonsense	c.5596	p.R1866*	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_HAND_2	-	no_errors	DNAH7	HGNC	ENSG00000118997	188	0	0.00	125	102	44.93	-	-	-
DRD5	0	genome.wustl.edu	37	4	9784550	9784550	+	Silent	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	4	9784550	9784550	G	A	SNP	DRD5	ENST00000304374	human	ensembl	69_37n	+1	known	silent	c.897	p.S299	0.303	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Dopa_1B_rcpt,prints_Dopamine_rcpt	-	no_errors	DRD5	HGNC	ENSG00000169676	36	0	0.00	28	4	12.50	-	-	-
FLII	0	genome.wustl.edu	37	17	18155040	18155040	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	17	18155040	18155040	A	C	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.1337	p.L446R	1.000	NULL	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	189	1	0.53	111	49	30.63	-	-	-
FLT1	0	genome.wustl.edu	37	13	28896410	28896410	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	13	28896410	28896410	A	G	SNP	FLT1	ENST00000282397	human	ensembl	69_37n	-1	known	missense	c.3040	p.S1014P	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_cat_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR1_rcpt_N,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	FLT1	HGNC	ENSG00000102755	209	0	0.00	75	96	56.14	-	-	-
FNIP1	0	genome.wustl.edu	37	5	131046309	131046309	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	5	131046309	131046309	C	A	SNP	FNIP1	ENST00000510461	human	ensembl	69_37n	-1	known	missense	c.668	p.G223V	1.000	NULL	NULL	-	no_errors	FNIP1	HGNC	ENSG00000217128	86	0	0.00	48	24	33.33	-	-	-
GAB4	0	genome.wustl.edu	37	22	17468927	17468927	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	22	17468927	17468927	C	T	SNP	GAB4	ENST00000465611	human	ensembl	69_37n	-1	known	missense	c.443	p.R148H	0.533	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GAB4	HGNC	ENSG00000215568	120	0	0.00	64	19	22.89	-	-	-
GALNT3	0	genome.wustl.edu	37	2	166618455	166618455	+	Silent	SNP	T	T	C			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	166618455	166618455	T	C	SNP	GALNT3	ENST00000392701	human	ensembl	69_37n	-1	known	silent	c.798	p.T266	0.973	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT3	HGNC	ENSG00000115339	341	0	0.00	152	119	43.91	-	-	-
GREB1L	0	genome.wustl.edu	37	18	19102675	19102675	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	18	19102675	19102675	C	T	SNP	GREB1L	ENST00000424526	human	ensembl	69_37n	+1	known	missense	c.5665	p.R1889C	1.000	NULL	NULL	-	no_errors	GREB1L	HGNC	ENSG00000141449	174	0	0.00	112	43	27.74	-	-	-
HOXD11	0	genome.wustl.edu	37	2	176973668	176973668	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	176973668	176973668	C	A	SNP	HOXD11	ENST00000249504	human	ensembl	69_37n	+1	known	missense	c.815	p.P272H	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_DUF3528,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXD11	HGNC	ENSG00000128713	126	0	0.00	105	20	16.00	-	-	-
IPO13	0	genome.wustl.edu	37	1	44413299	44413299	+	Silent	SNP	G	G	T			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	44413299	44413299	G	T	SNP	IPO13	ENST00000372343	human	ensembl	69_37n	+1	known	silent	c.27	p.G9	1.000	NULL	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO13	HGNC	ENSG00000117408	55	0	0.00	44	9	16.98	-	-	-
LIPT2	0	genome.wustl.edu	37	11	74203306	74203306	+	Silent	SNP	T	T	G			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	74203306	74203306	T	G	SNP	LIPT2	ENST00000310109	human	ensembl	69_37n	-1	known	silent	c.570	p.T190	0.853	tigrfam_Octanoyltransferase	pfam_BPL_LipA_LipB,tigrfam_Octanoyltransferase	-	no_errors	LIPT2	HGNC	ENSG00000175536	114	0	0.00	123	28	18.54	-	-	-
LRRC41	0	genome.wustl.edu	37	1	46746855	46746855	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	46746855	46746855	A	-	DEL	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	frame_shift_del	c.1698	p.G567fs	0.983	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	96	0	0.00	83	19	17.43	-	-	-
MUC16	0	genome.wustl.edu	37	19	9074465	9074465	+	Silent	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	9074465	9074465	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.12981	p.V4327	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	273	0	0.00	222	80	26.49	-	-	-
MYO18A	0	genome.wustl.edu	37	17	27401792	27401792	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	17	27401792	27401792	G	A	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.6161	p.A2054V	0.687	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	271	0	0.00	144	71	33.02	-	-	-
NAMPTL	0	genome.wustl.edu	37	10	36811916	36811916	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	10	36811916	36811916	G	A	SNP	NAMPTL	ENST00000543053	human	ensembl	69_37n	-1	known	missense	c.191	p.T64M	1.000	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C	pfam_Nic_PRibTrfase-like,superfamily_Quinolinate_PRibosylTrfase_C	-	no_errors	NAMPTL	HGNC	ENSG00000229644	379	0	0.00	557	144	20.51	-	-	-
NWD1	0	genome.wustl.edu	37	19	16918910	16918910	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	16918910	16918910	T	C	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	+1	known	missense	c.4250	p.L1417P	0.997	pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	85	0	0.00	125	17	11.97	-	-	-
OR51C1P	0	genome.wustl.edu	37	11	4712725	4712725	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	4712725	4712725	C	T	SNP	OR51C1P	ENST00000357764	human	ensembl	69_37n	-1	known	missense	c.202	p.A68T	0.074	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51C1P	HGNC	ENSG00000197674	9	0	0.00	15	9	37.50	-	-	-
PARD3	0	genome.wustl.edu	37	10	34400454	34400454	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	10	34400454	34400454	G	C	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.3714	p.D1238E	0.952	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	97	0	0.00	169	25	12.89	-	-	-
PIP5K1C	0	genome.wustl.edu	37	19	3643289	3643289	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	3643289	3643289	G	A	SNP	PIP5K1C	ENST00000537021	human	ensembl	69_37n	-1	known	missense	c.1601	p.S534F	1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1C	HGNC	ENSG00000186111	237	0	0.00	114	51	30.91	-	-	-
PLD5	0	genome.wustl.edu	37	1	242287770	242287770	+	Silent	SNP	C	C	T			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	242287770	242287770	C	T	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	silent	c.933	p.S311	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	285	1	0.35	187	52	21.76	-	-	-
PREX1	0	genome.wustl.edu	37	20	47296244	47296244	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	20	47296244	47296244	C	T	SNP	PREX1	ENST00000371941	human	ensembl	69_37n	-1	known	missense	c.1484	p.R495H	1.000	smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX1	HGNC	ENSG00000124126	135	0	0.00	144	35	19.44	-	-	-
RB1	0	genome.wustl.edu	37	13	48934189	48934189	+	Nonsense_Mutation	SNP	C	C	G			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	13	48934189	48934189	C	G	SNP	RB1	ENST00000267163	human	ensembl	69_37n	+1	known	nonsense	c.644	p.S215*	1.000	pfam_DUF3452_retinoblatoma-assoc	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	337	0	0.00	110	96	46.60	-	-	-
RNF144A	0	genome.wustl.edu	37	2	7179763	7179763	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	7179763	7179763	G	A	SNP	RNF144A	ENST00000320892	human	ensembl	69_37n	+1	known	missense	c.751	p.V251M	1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF144A	HGNC	ENSG00000151692	426	0	0.00	246	185	42.92	-	-	-
S1PR2	0	genome.wustl.edu	37	19	10334727	10334727	+	Silent	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	10334727	10334727	G	A	SNP	S1PR2	ENST00000590320	human	ensembl	69_37n	-1	known	silent	c.855	p.P285	0.152	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_EDG5_rcpt,prints_7TM_GPCR_Rhodpsn,prints_S1P_rcpt,prints_Melcrt_ACTH_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	S1PR2	Clone_based_vega_gene	ENSG00000267534	105	0	0.00	84	25	22.94	-	-	-
SEMA3A	0	genome.wustl.edu	37	7	83823815	83823815	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	7	83823815	83823815	G	C	SNP	SEMA3A	ENST00000265362	human	ensembl	69_37n	-1	known	missense	c.88	p.P30A	1.000	superfamily_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3A	HGNC	ENSG00000075213	385	1	0.26	316	94	22.93	-	-	-
SPDEF	0	genome.wustl.edu	37	6	34506131	34506131	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	6	34506131	34506131	G	A	SNP	SPDEF	ENST00000374037	human	ensembl	69_37n	-1	known	missense	c.928	p.R310C	1.000	pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	SPDEF	HGNC	ENSG00000124664	291	1	0.34	146	100	40.49	-	-	-
SPTA1	0	genome.wustl.edu	37	1	158615165	158615165	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	1	158615165	158615165	G	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.4007	p.A1336V	0.950	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	166	0	0.00	110	50	31.25	-	-	-
STIM1	0	genome.wustl.edu	37	11	4091418	4091418	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	11	4091418	4091418	A	G	SNP	STIM1	ENST00000300737	human	ensembl	69_37n	+1	known	missense	c.776	p.H259R	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	STIM1	HGNC	ENSG00000167323	229	0	0.00	193	58	23.11	-	-	-
TP53	0	genome.wustl.edu	37	17	7574003	7574003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	17	7574003	7574003	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.1024	p.R342fs	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	108	0	0.00	53	19	26.03	-	-	-
WWP2	0	genome.wustl.edu	37	16	69972999	69972999	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	16	69972999	69972999	C	-	DEL	WWP2	ENST00000356003	human	ensembl	69_37n	+1	known	frame_shift_del	c.2413	p.V806fs	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP	-	no_errors	WWP2	HGNC	ENSG00000198373	225	0	0.00	109	56	33.33	-	-	-
ZBTB33	0	genome.wustl.edu	37	X	119389284	119389285	+	Frame_Shift_Ins	INS	-	-	TA			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	X	119389284	119389285	-	TA	INS	ZBTB33	ENST00000326624	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2014_2015	p.Y672fs	1.000:1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485	49	0	0.00	20	6	23.08	-	-	-
ZFP36L2	0	genome.wustl.edu	37	2	43452831	43452832	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	2	43452831	43452832	-	C	INS	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	frame_shift_ins	c.112_111	p.T37fs	1.000:0.993	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	17	0	0.00	12	3	20.00	-	-	-
ZNF726	0	genome.wustl.edu	37	19	24116016	24116016	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AQ-01A-11D-A12Q-09	TCGA-AR-A1AQ-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	88ff7728-ecc9-4ec5-817e-4793619ab5a4	3f1960e3-339f-42e6-a925-fa21d1d6e2a5	19	24116016	24116016	G	C	SNP	ZNF726	ENST00000322487	human	ensembl	69_37n	+1	known	missense	c.1098	p.E366D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF726	HGNC	ENSG00000213967	76	0	0.00	47	17	26.56	-	-	-
