Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ATP10B	0	genome.wustl.edu	37	5	160097495	160097495	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	5	160097495	160097495	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	69_37n	-1	known	missense	c.650	p.C217Y	0.712	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10B	HGNC	ENSG00000118322	256	2	0.78	89	42	32.06	-	-	-
BCL11A	0	genome.wustl.edu	37	2	60687616	60687616	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	2	60687616	60687616	C	T	SNP	BCL11A	ENST00000335712	human	ensembl	69_37n	-1	known	missense	c.2431	p.V811M	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866	100	0	0.00	27	18	40.00	-	-	-
C1orf111	0	genome.wustl.edu	37	1	162343895	162343895	+	Silent	SNP	G	G	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	162343895	162343895	G	A	SNP	C1orf111	ENST00000367935	human	ensembl	69_37n	-1	known	silent	c.729	p.F243	1.000	NULL	NULL	-	no_errors	C1orf111	HGNC	ENSG00000171722	66	0	0.00	60	7	10.45	-	-	-
CNGA4	0	genome.wustl.edu	37	11	6261794	6261794	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	11	6261794	6261794	G	A	SNP	CNGA4	ENST00000379936	human	ensembl	69_37n	+1	known	missense	c.770	p.G257D	1.000	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259	50	0	0.00	19	10	34.48	-	-	-
EIF4A3	0	genome.wustl.edu	37	17	78110120	78110120	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	17	78110120	78110120	G	C	SNP	EIF4A3	ENST00000269349	human	ensembl	69_37n	-1	known	missense	c.998	p.S333C	0.890	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A3	HGNC	ENSG00000141543	184	0	0.00	52	16	23.53	-	-	-
EPHB6	0	genome.wustl.edu	37	7	142568630	142568630	+	Silent	SNP	G	G	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	7	142568630	142568630	G	A	SNP	EPHB6	ENST00000392957	human	ensembl	69_37n	+1	known	silent	c.3039	p.L1013	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_SAM/pointed	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	30	0	0.00	22	17	43.59	-	-	-
EYA2	0	genome.wustl.edu	37	20	45801427	45801427	+	Silent	SNP	G	G	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	20	45801427	45801427	G	A	SNP	EYA2	ENST00000327619	human	ensembl	69_37n	+1	known	silent	c.1110	p.V370	0.330	pfam_Dehalogen-like_hydro,tigrfam_EYA	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA2	HGNC	ENSG00000064655	127	0	0.00	87	12	12.12	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	61	0	0.00	28	4	12.50	-	-	-
FUOM	0	genome.wustl.edu	37	10	135170746	135170746	+	Silent	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	10	135170746	135170746	C	T	SNP	FUOM	ENST00000368552	human	ensembl	69_37n	-1	known	silent	c.99	p.L33	0.275	pfam_RbsD_FucU,superfamily_RbsD-like	pfam_RbsD_FucU,superfamily_RbsD-like	-	no_errors	FUOM	HGNC	ENSG00000148803	35	0	0.00	23	7	23.33	-	-	-
GATA3	0	genome.wustl.edu	37	10	8100440	8100440	+	Silent	SNP	C	C	G			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	10	8100440	8100440	C	G	SNP	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	silent	c.414	p.S138	0.884	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	42	0	0.00	18	10	35.71	-	-	-
GIMAP4	0	genome.wustl.edu	37	7	150269546	150269546	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	7	150269546	150269546	G	A	SNP	GIMAP4	ENST00000255945	human	ensembl	69_37n	+1	known	missense	c.388	p.E130K	1.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP4	HGNC	ENSG00000133574	98	0	0.00	19	14	42.42	-	-	-
GLRX2	0	genome.wustl.edu	37	1	193065756	193065756	+	Nonstop_Mutation	SNP	C	C	G			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	193065756	193065756	C	G	SNP	GLRX2	ENST00000367440	human	ensembl	69_37n	-1	known	nonstop	c.497	p.*166S	0.093	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	-	no_errors	GLRX2	HGNC	ENSG00000023572	193	0	0.00	103	22	17.46	-	-	-
GOLPH3	0	genome.wustl.edu	37	5	32143957	32143957	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	5	32143957	32143957	T	C	SNP	GOLPH3	ENST00000265070	human	ensembl	69_37n	-1	known	missense	c.255	p.I85M	1.000	pfam_GPP34	pfam_GPP34	-	no_errors	GOLPH3	HGNC	ENSG00000113384	212	0	0.00	53	49	48.04	-	-	-
GPRIN2	0	genome.wustl.edu	37	10	46998995	46998995	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	10	46998995	46998995	C	G	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	+1	known	missense	c.115	p.L39V	0.989	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	10	0	0.00	8	4	33.33	-	-	-
HMGN5	0	genome.wustl.edu	37	X	80370668	80370668	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	X	80370668	80370668	T	G	SNP	HMGN5	ENST00000358130	human	ensembl	69_37n	-1	known	missense	c.329	p.E110A	0.045	NULL	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN5	HGNC	ENSG00000198157	537	2	0.37	119	83	41.09	-	-	-
IRAK3	0	genome.wustl.edu	37	12	66638269	66638269	+	Silent	SNP	A	A	C			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	12	66638269	66638269	A	C	SNP	IRAK3	ENST00000261233	human	ensembl	69_37n	+1	known	silent	c.891	p.A297	0.997	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,superfamily_Kinase-like_dom,superfamily_DEATH-like,smart_Death,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom	-	no_errors	IRAK3	HGNC	ENSG00000090376	156	0	0.00	38	31	44.93	-	-	-
KRAS	0	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	12	25398284	25398284	C	A	SNP	KRAS	ENST00000256078	human	ensembl	69_37n	-1	known	missense	c.35	p.G12V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703	264	0	0.00	82	35	29.91	-	-	-
LARP6	0	genome.wustl.edu	37	15	71128708	71128708	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	15	71128708	71128708	C	T	SNP	LARP6	ENST00000299213	human	ensembl	69_37n	-1	known	missense	c.337	p.A113T	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd,prints_Lupus_La	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd,prints_Lupus_La	-	no_errors	LARP6	HGNC	ENSG00000166173	156	0	0.00	41	35	45.45	-	-	-
LCAT	0	genome.wustl.edu	37	16	67977911	67977911	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	16	67977911	67977911	A	T	SNP	LCAT	ENST00000264005	human	ensembl	69_37n	-1	known	missense	c.94	p.F32I	1.000	NULL	pfam_LACT/PDAT_acylTrfase	-	no_errors	LCAT	HGNC	ENSG00000213398	42	0	0.00	23	24	50.00	-	-	-
LILRB3	0	genome.wustl.edu	37	19	54726628	54726628	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	19	54726628	54726628	C	T	SNP	LILRB3	ENST00000346401	human	ensembl	69_37n	-1	known	missense	c.61	p.V21M	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	11	0	0.00	3	3	50.00	-	-	-
LRFN5	0	genome.wustl.edu	37	14	42360996	42360996	+	Silent	SNP	G	G	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	14	42360996	42360996	G	A	SNP	LRFN5	ENST00000298119	human	ensembl	69_37n	+1	known	silent	c.1929	p.Q643	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRFN5	HGNC	ENSG00000165379	157	0	0.00	44	32	42.11	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	12016634	12016634	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	17	12016634	12016634	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	missense	c.803	p.S268F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	120	0	0.00	13	17	56.67	-	-	-
MAPK4	0	genome.wustl.edu	37	18	48255652	48255652	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	18	48255652	48255652	C	T	SNP	MAPK4	ENST00000400384	human	ensembl	69_37n	+1	known	missense	c.1192	p.R398C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639	14	0	0.00	8	4	33.33	-	-	-
MST1P9	0	genome.wustl.edu	37	1	17083837	17083837	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	17083837	17083837	T	C	SNP	MST1P9	ENST00000334998	human	ensembl	69_37n	-1	known	missense	c.1960	p.K654E	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	MST1P9	HGNC	ENSG00000186715	15	0	0.00	8	4	33.33	-	-	-
MUC15	0	genome.wustl.edu	37	11	26582735	26582735	+	Silent	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	11	26582735	26582735	C	T	SNP	MUC15	ENST00000436318	human	ensembl	69_37n	-1	known	silent	c.963	p.V321	0.113	NULL	NULL	-	no_errors	MUC15	HGNC	ENSG00000169550	322	0	0.00	93	54	36.73	-	-	-
MYOF	0	genome.wustl.edu	37	10	95137179	95137182	+	Frame_Shift_Del	DEL	TTTG	TTTG	-			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	TTTG	TTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	10	95137179	95137182	TTTG	-	DEL	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	frame_shift_del	c.2009_2006	p.T669fs	0.987:0.989:0.900:0.996	NULL	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	365	0	0.00	98	44	30.99	-	-	-
NXF1	0	genome.wustl.edu	37	11	62572858	62572858	+	RNA	SNP	G	G	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	11	62572858	62572858	G	A	SNP	NXF1	ENST00000526163	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NXF1	HGNC	ENSG00000162231	25	0	0.00	10	15	60.00	-	-	-
PCDHA4	0	genome.wustl.edu	37	5	140187112	140187112	+	Silent	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	5	140187112	140187112	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	+1	known	silent	c.340	p.L114	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	105	0	0.00	43	11	20.37	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936092	178936092	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	3	178936092	178936092	A	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1634	p.E545A	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	189	0	0.00	46	48	51.06	-	-	-
PLXNA4	0	genome.wustl.edu	37	7	131848926	131848926	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	7	131848926	131848926	C	T	SNP	PLXNA4	ENST00000321063	human	ensembl	69_37n	-1	known	missense	c.4475	p.R1492H	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA4	HGNC	ENSG00000221866	175	0	0.00	69	44	38.94	-	-	-
RBM6	0	genome.wustl.edu	37	3	50095901	50095901	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	3	50095901	50095901	A	G	SNP	RBM6	ENST00000266022	human	ensembl	69_37n	+1	known	missense	c.2036	p.Y679C	0.997	smart_RRM_dom	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534	110	0	0.00	43	50	53.76	-	-	-
RYR2	0	genome.wustl.edu	37	1	237632461	237632461	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	237632461	237632461	G	T	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	+1	known	missense	c.1676	p.R559I	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	363	0	0.00	229	61	20.89	-	-	-
SLC6A9	0	genome.wustl.edu	37	1	44468079	44468079	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	44468079	44468079	C	A	SNP	SLC6A9	ENST00000360584	human	ensembl	69_37n	-1	known	missense	c.1087	p.D363Y	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517	57	0	0.00	36	4	10.00	-	-	-
SPRR2B	0	genome.wustl.edu	37	1	153043220	153043220	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	153043220	153043220	G	T	SNP	SPRR2B	ENST00000341611	human	ensembl	69_37n	-1	known	nonsense	c.96	p.C32*	0.151	NULL	NULL	-	no_errors	SPRR2B	HGNC	ENSG00000196805	249	0	0.00	149	47	23.98	-	-	-
SPTA1	0	genome.wustl.edu	37	1	158605731	158605733	+	In_Frame_Del	DEL	CCC	CCC	-			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	158605731	158605733	CCC	-	DEL	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	in_frame_del	c.5404_5402	p.WEKLK1801in_frame_del*	1.000:1.000:1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	108	0	0.00	84	10	10.53	-	-	-
THEM5	0	genome.wustl.edu	37	1	151819737	151819738	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	151819737	151819738	GG	-	DEL	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_del	c.642_641	p.P214fs	0.878:0.888	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	8	0	0.00	7	4	33.33	-	-	-
TOMM40	0	genome.wustl.edu	37	19	45406420	45406420	+	Silent	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	19	45406420	45406420	C	T	SNP	TOMM40	ENST00000252487	human	ensembl	69_37n	+1	known	silent	c.1080	p.I360	0.916	NULL	pfam_Porin_Euk	-	no_errors	TOMM40	HGNC	ENSG00000130204	38	0	0.00	36	5	12.20	-	-	-
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	73	0	0.00	20	22	52.38	-	-	-
TTN	0	genome.wustl.edu	37	2	179427821	179427821	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	2	179427821	179427821	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.75334	p.D25112N	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	99	1	0.99	33	23	41.07	-	-	-
TXNDC2	0	genome.wustl.edu	37	18	9887689	9887689	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	18	9887689	9887689	C	T	SNP	TXNDC2	ENST00000306084	human	ensembl	69_37n	+1	known	missense	c.1213	p.P405S	0.000	NULL	pfam_Thioredoxin_domain,pfam_Glutenin,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC2	HGNC	ENSG00000168454	464	1	0.21	119	73	38.02	-	-	-
WRAP73	0	genome.wustl.edu	37	1	3566551	3566551	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	3566551	3566551	C	T	SNP	WRAP73	ENST00000270708	human	ensembl	69_37n	-1	known	missense	c.13	p.E5K	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WRAP73	HGNC	ENSG00000116213	14	0	0.00	9	4	30.77	-	-	-
ZC3H11A	0	genome.wustl.edu	37	1	203819082	203819082	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3f26f93c-e11a-4ec9-b73b-98fcadc209f4	97a055bf-af49-4c79-bc12-0b3644f21638	1	203819082	203819082	G	A	SNP	ZC3H11A	ENST00000332127	human	ensembl	69_37n	+1	known	missense	c.1867	p.E623K	0.989	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	74	0	0.00	42	9	17.65	-	-	-
