Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA8	0	genome.wustl.edu	37	17	66920927	66920927	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	66920927	66920927	G	T	SNP	ABCA8	ENST00000430352	human	ensembl	69_37n	-1	known	missense	c.1357	p.L453I	0.211	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338	53	0	0.00	34	23	40.35	-	-	-
CCER1	0	genome.wustl.edu	37	12	91347459	91347459	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	12	91347459	91347459	C	T	SNP	CCER1	ENST00000358859	human	ensembl	69_37n	-1	known	missense	c.1061	p.G354E	0.041	NULL	NULL	-	no_errors	CCER1	HGNC	ENSG00000197651	87	0	0.00	59	27	31.40	-	-	-
CHST8	0	genome.wustl.edu	37	19	34263642	34263642	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	34263642	34263642	G	A	SNP	CHST8	ENST00000262622	human	ensembl	69_37n	+1	known	missense	c.949	p.D317N	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST8	HGNC	ENSG00000124302	16	0	0.00	12	9	42.86	-	-	-
CYP2S1	0	genome.wustl.edu	37	19	41704416	41704416	+	Silent	SNP	A	A	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	41704416	41704416	A	T	SNP	CYP2S1	ENST00000310054	human	ensembl	69_37n	+1	known	silent	c.543	p.V181	0.001	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600	36	0	0.00	30	19	38.78	-	-	-
EEF2	0	genome.wustl.edu	37	19	3983150	3983150	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	3983150	3983150	G	C	SNP	EEF2	ENST00000309311	human	ensembl	69_37n	-1	known	missense	c.358	p.R120G	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EEF2	HGNC	ENSG00000167658	20	0	0.00	16	8	32.00	-	-	-
EGF	0	genome.wustl.edu	37	4	110925680	110925680	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	4	110925680	110925680	A	G	SNP	EGF	ENST00000265171	human	ensembl	69_37n	+1	known	missense	c.3193	p.K1065E	0.003	pirsf_Pro-epidermal_GF	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,smart_LDLR_classB_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	38	0	0.00	31	25	44.64	-	-	-
GOLGA8J	0	genome.wustl.edu	37	15	32689491	32689491	+	Silent	SNP	T	T	C			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	15	32689491	32689491	T	C	SNP	GOLGA8J	ENST00000512626	human	ensembl	69_37n	-1	novel	silent	c.699	p.Q233	0.003	NULL	NULL	-	no_errors	RP13-395E19.1	Clone_based_vega_gene	ENSG00000249931	24	0	0.00	25	10	28.57	-	-	-
IGDCC3	0	genome.wustl.edu	37	15	65622726	65622726	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	15	65622726	65622726	G	A	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	missense	c.1763	p.A588V	0.004	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC3	HGNC	ENSG00000174498	29	0	0.00	26	6	18.75	-	-	-
KCNH8	0	genome.wustl.edu	37	3	19295241	19295241	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	3	19295241	19295241	A	G	SNP	KCNH8	ENST00000328405	human	ensembl	69_37n	+1	known	missense	c.172	p.T58A	1.000	pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,tigrfam_PAS	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	62	0	0.00	60	39	39.39	-	-	-
LIPT1	0	genome.wustl.edu	37	2	99778927	99778927	+	Silent	SNP	C	C	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	2	99778927	99778927	C	T	SNP	LIPT1	ENST00000340066	human	ensembl	69_37n	+1	known	silent	c.507	p.I169	0.992	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182	45	0	0.00	16	16	50.00	-	-	-
LRGUK	0	genome.wustl.edu	37	7	133842882	133842882	+	Silent	SNP	A	A	G			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	7	133842882	133842882	A	G	SNP	LRGUK	ENST00000285928	human	ensembl	69_37n	+1	known	silent	c.765	p.L255	0.015	NULL	pfam_Guanylate_kin,pfam_Leu-rich_rpt,smart_Guanylate_kin/L-typ_Ca_channel,pfscan_Guanylate_kin	-	no_errors	LRGUK	HGNC	ENSG00000155530	55	0	0.00	44	7	13.73	-	-	-
MET	0	genome.wustl.edu	37	7	116399515	116399515	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	7	116399515	116399515	G	A	SNP	MET	ENST00000318493	human	ensembl	69_37n	+1	known	missense	c.2389	p.V797M	0.964	pirsf_Tyr_kinase_HGF/MSP_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semaphorin/CD100_Ag,pfscan_Prot_kinase_cat_dom	-	no_errors	MET	HGNC	ENSG00000105976	36	0	0.00	28	20	41.67	-	-	-
MPV17L2	0	genome.wustl.edu	37	19	18304729	18304729	+	Silent	SNP	G	G	A			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	18304729	18304729	G	A	SNP	MPV17L2	ENST00000247712	human	ensembl	69_37n	+1	known	silent	c.243	p.L81	0.623	NULL	pfam_Mpv17_PMP22	-	no_errors	MPV17L2	HGNC	ENSG00000254858	44	0	0.00	34	17	33.33	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1268579	1268579	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	11	1268579	1268579	T	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.10478	p.V3493G	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	60	0	0.00	73	9	10.98	-	-	-
OFD1	0	genome.wustl.edu	37	X	13774756	13774756	+	Silent	SNP	G	G	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	X	13774756	13774756	G	T	SNP	OFD1	ENST00000340096	human	ensembl	69_37n	+1	known	silent	c.1281	p.L427	0.887	superfamily_Lipoprotein_6	superfamily_Lipoprotein_6,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	OFD1	HGNC	ENSG00000046651	56	0	0.00	31	4	11.43	-	-	-
PADI6	0	genome.wustl.edu	37	1	17701986	17701986	+	RNA	SNP	C	C	G			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	1	17701986	17701986	C	G	SNP	PADI6	ENST00000358481	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049	34	0	0.00	12	13	52.00	-	-	-
PI15	0	genome.wustl.edu	37	8	75756324	75756324	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	8	75756324	75756324	C	T	SNP	PI15	ENST00000260113	human	ensembl	69_37n	+1	known	missense	c.382	p.R128C	0.989	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI15	HGNC	ENSG00000137558	56	0	0.00	91	19	17.27	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921567	178921567	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	3	178921567	178921567	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1049	p.D350G	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	21	0	0.00	11	8	42.11	-	-	-
POLR2J	0	genome.wustl.edu	37	7	102119254	102119256	+	Splice_Site	DEL	CTT	CTT	-			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	7	102119254	102119256	CTT	-	DEL	POLR2J	ENST00000393794	human	ensembl	69_37n	-1	known	splice_site_del	c.53+3_53+1	e2-1	1.000:1.000:1.000	-	-	-	no_errors	POLR2J	HGNC	ENSG00000005075	14	0	0.00	15	2	11.76	-	-	-
PRKCD	0	genome.wustl.edu	37	3	53223092	53223092	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	3	53223092	53223092	T	A	SNP	PRKCD	ENST00000330452	human	ensembl	69_37n	+1	known	missense	c.1573	p.Y525N	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCD	HGNC	ENSG00000163932	37	0	0.00	30	17	36.17	-	-	-
RRBP1	0	genome.wustl.edu	37	20	17641006	17641006	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	20	17641006	17641006	C	T	SNP	RRBP1	ENST00000246043	human	ensembl	69_37n	-1	known	missense	c.147	p.M49I	1.000	pfam_Rib_rcpt_KP	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	63	0	0.00	20	43	68.25	-	-	-
SETX	0	genome.wustl.edu	37	9	135172419	135172419	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	9	135172419	135172419	T	C	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.5804	p.N1935S	0.996	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	66	0	0.00	8	36	81.82	-	-	-
SPDYE4	0	genome.wustl.edu	37	17	8660619	8660619	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	8660619	8660619	C	T	SNP	SPDYE4	ENST00000328794	human	ensembl	69_37n	-1	known	missense	c.301	p.V101M	0.001	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE4	HGNC	ENSG00000183318	36	0	0.00	21	24	53.33	-	-	-
SPTBN2	0	genome.wustl.edu	37	11	66460727	66460727	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	11	66460727	66460727	C	T	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	missense	c.4784	p.R1595H	0.429	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	22	0	0.00	14	5	26.32	-	-	-
STAB2	0	genome.wustl.edu	37	12	104100711	104100711	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	12	104100711	104100711	G	A	SNP	STAB2	ENST00000388887	human	ensembl	69_37n	+1	known	missense	c.4138	p.G1380S	0.999	smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF_laminin,smart_Prot_inh_squash,smart_EGF-like_Ca-bd,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	34	0	0.00	31	13	29.55	-	-	-
TMTC2	0	genome.wustl.edu	37	12	83444707	83444707	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	12	83444707	83444707	G	A	SNP	TMTC2	ENST00000321196	human	ensembl	69_37n	+1	known	missense	c.2177	p.R726H	1.000	pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104	42	0	0.00	21	28	57.14	-	-	-
TP53	0	genome.wustl.edu	37	17	7579360	7579361	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	17	7579360	7579361	-	AA	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.327_326	p.R110fs	0.864:0.980	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	20	0	0.00	3	18	85.71	-	-	-
VCL	0	genome.wustl.edu	37	10	75834570	75834570	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	10	75834570	75834570	A	G	SNP	VCL	ENST00000211998	human	ensembl	69_37n	+1	known	missense	c.692	p.N231S	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC	ENSG00000035403	34	0	0.00	29	15	34.09	-	-	-
VN1R4	0	genome.wustl.edu	37	19	53770069	53770069	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24K-01A-11D-A167-09	TCGA-AR-A24K-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df692383-1d6d-4caa-b44c-7a133ec4b7ee	fb6f3270-79c2-4c04-9b6e-65079c35b944	19	53770069	53770069	C	T	SNP	VN1R4	ENST00000311170	human	ensembl	69_37n	-1	known	missense	c.850	p.V284I	0.000	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Vmron_rcpt_1	-	no_errors	VN1R4	HGNC	ENSG00000228567	40	0	0.00	20	15	42.86	-	-	-
