Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA3	0	genome.wustl.edu	37	16	2345722	2345722	+	Silent	SNP	C	C	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	16	2345722	2345722	C	T	SNP	ABCA3	ENST00000301732	human	ensembl	69_37n	-1	known	silent	c.2283	p.T761	0.121	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	29	0	0.00	25	7	21.88	-	-	-
CROCC	0	genome.wustl.edu	37	1	17273292	17273292	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	17273292	17273292	C	T	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	+1	known	missense	c.2320	p.R774W	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	12	0	0.00	10	7	41.18	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40383905	40383905	+	Silent	SNP	G	G	A			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	19	40383905	40383905	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.9705	p.C3235	0.488	smart_VWC_out	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	24	0	0.00	14	6	30.00	-	-	-
GOLGB1	0	genome.wustl.edu	37	3	121416508	121416508	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	3	121416508	121416508	C	T	SNP	GOLGB1	ENST00000489400	human	ensembl	69_37n	-1	novel	nonsense	c.2459	p.W820*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	GOLGB1	HGNC	ENSG00000173230	49	0	0.00	35	28	44.44	-	-	-
MBNL2	0	genome.wustl.edu	37	13	97999169	97999169	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	13	97999169	97999169	T	A	SNP	MBNL2	ENST00000376673	human	ensembl	69_37n	+1	known	missense	c.652	p.C218S	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	MBNL2	HGNC	ENSG00000139793	29	0	0.00	6	9	60.00	-	-	-
MIR30E	0	genome.wustl.edu	37	1	41220041	41220041	+	RNA	DEL	A	A	-			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	41220041	41220041	A	-	DEL	MIR30E	ENST00000362104	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	MIR30E	HGNC	ENSG00000198974	36	0	0.00	31	11	26.19	-	-	-
MIR30E	0	genome.wustl.edu	37	1	41220042	41220042	+	RNA	SNP	C	C	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	41220042	41220042	C	T	SNP	MIR30E	ENST00000362104	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR30E	HGNC	ENSG00000198974	36	0	0.00	30	11	26.83	-	-	-
MRE11A	0	genome.wustl.edu	37	11	94209462	94209462	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	11	94209462	94209462	G	T	SNP	MRE11A	ENST00000323929	human	ensembl	69_37n	-1	known	missense	c.652	p.Q218K	1.000	pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	pfam_Mre11_DNA-bd,pfam_Metallo_PEstase_dom,pirsf_DNA_repair_Mre11,tigrfam_DNA_repair_Mre11	-	no_errors	MRE11A	HGNC	ENSG00000020922	59	0	0.00	29	19	39.58	-	-	-
NTHL1	0	genome.wustl.edu	37	16	2093638	2093638	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	16	2093638	2093638	C	T	SNP	NTHL1	ENST00000561841	human	ensembl	69_37n	-1	known	missense	c.535	p.A179T	0.191	pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain	pfam_HhH-GPD_domain,pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NTHL1	HGNC	ENSG00000065057	13	0	0.00	13	13	50.00	-	-	-
PHLDB3	0	genome.wustl.edu	37	19	44008076	44008076	+	Silent	SNP	A	A	G			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	19	44008076	44008076	A	G	SNP	PHLDB3	ENST00000292140	human	ensembl	69_37n	-1	known	silent	c.195	p.T65	0.308	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531	25	0	0.00	14	5	26.32	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	60	0	0.00	45	33	42.31	-	-	-
PIK3R1	0	genome.wustl.edu	37	5	67590467	67590467	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	5	67590467	67590467	A	T	SNP	PIK3R1	ENST00000396611	human	ensembl	69_37n	+1	known	missense	c.1529	p.E510V	1.000	superfamily_Guanylate-bd_C,prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	41	0	0.00	30	16	34.78	-	-	-
PLD5	0	genome.wustl.edu	37	1	242383361	242383361	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	242383361	242383361	A	G	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	missense	c.664	p.S222P	1.000	smart_PLipase_D/transphosphatidylase	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	36	0	0.00	50	9	15.25	-	-	-
PLK3	0	genome.wustl.edu	37	1	45270401	45270401	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	45270401	45270401	C	A	SNP	PLK3	ENST00000372201	human	ensembl	69_37n	+1	known	missense	c.1585	p.L529M	1.000	pfam_POLO_box_duplicated_dom,pfscan_POLO_box_duplicated_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK3	HGNC	ENSG00000173846	29	0	0.00	25	15	37.50	-	-	-
SLC25A36	0	genome.wustl.edu	37	3	140675496	140675496	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	3	140675496	140675496	A	G	SNP	SLC25A36	ENST00000324194	human	ensembl	69_37n	+1	known	missense	c.169	p.N57D	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120	51	0	0.00	24	18	41.86	-	-	-
SLC35B2	0	genome.wustl.edu	37	6	44224107	44224107	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	6	44224107	44224107	T	-	DEL	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	frame_shift_del	c.332	p.K111fs	1.000	NULL	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	25	0	0.00	9	11	55.00	-	-	-
SLC35B2	0	genome.wustl.edu	37	6	44224110	44224110	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	6	44224110	44224110	A	T	SNP	SLC35B2	ENST00000393812	human	ensembl	69_37n	-1	known	missense	c.329	p.L110Q	1.000	NULL	pfam_UAA,pfam_DMT	-	no_errors	SLC35B2	HGNC	ENSG00000157593	25	0	0.00	10	12	54.55	-	-	-
SNTG2	0	genome.wustl.edu	37	2	1094038	1094038	+	Splice_Site	SNP	G	G	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	2	1094038	1094038	G	T	SNP	SNTG2	ENST00000308624	human	ensembl	69_37n	+1	known	splice_site	c.268-1	e4-1	1.000	-	-	-	no_errors	SNTG2	HGNC	ENSG00000172554	73	0	0.00	50	26	34.21	-	-	-
TRIM2	0	genome.wustl.edu	37	4	154191510	154191510	+	Silent	SNP	A	A	G			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	4	154191510	154191510	A	G	SNP	TRIM2	ENST00000338700	human	ensembl	69_37n	+1	known	silent	c.54	p.T18	0.998	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM2	HGNC	ENSG00000109654	38	0	0.00	21	17	44.74	-	-	-
TTC6	0	genome.wustl.edu	37	14	38277943	38277943	+	Silent	SNP	T	T	C			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	14	38277943	38277943	T	C	SNP	TTC6	ENST00000478811	human	ensembl	69_37n	+1	known	silent	c.654	p.Y218	0.989	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865	63	0	0.00	35	19	35.19	-	-	-
UBXN11	0	genome.wustl.edu	37	1	26608885	26608885	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	26608885	26608885	C	T	SNP	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	missense	c.1468	p.G490S	0.000	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	9	0	0.00	6	4	40.00	-	-	-
UBXN11	0	genome.wustl.edu	37	1	26608889	26608889	+	Silent	SNP	A	A	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	1	26608889	26608889	A	T	SNP	UBXN11	ENST00000374221	human	ensembl	69_37n	-1	known	silent	c.1464	p.G488	0.001	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	11	0	0.00	7	5	41.67	-	-	-
UTP3	0	genome.wustl.edu	37	4	71555017	71555017	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	4	71555017	71555017	C	T	SNP	UTP3	ENST00000254803	human	ensembl	69_37n	+1	known	missense	c.623	p.A208V	0.746	NULL	pfam_Sas10_C,pfam_Sas10/Utp3/C1D	-	no_errors	UTP3	HGNC	ENSG00000132467	35	0	0.00	24	4	14.29	-	-	-
ZNF622	0	genome.wustl.edu	37	5	16463793	16463793	+	Silent	SNP	G	G	A			TCGA-AR-A24M-01A-11D-A167-09	TCGA-AR-A24M-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	722a8960-3a69-4f66-b972-74e6de94a1e8	89946989-b650-4ddd-86dc-b6e459588d38	5	16463793	16463793	G	A	SNP	ZNF622	ENST00000308683	human	ensembl	69_37n	-1	known	silent	c.684	p.D228	0.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF622	HGNC	ENSG00000173545	57	0	0.00	40	17	29.82	-	-	-
