Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADCY7	0	genome.wustl.edu	37	16	50346035	50346035	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	16	50346035	50346035	G	A	SNP	ADCY7	ENST00000254235	human	ensembl	69_37n	+1	known	missense	c.2537	p.R846H	1.000	smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY7	HGNC	ENSG00000121281	51	0	0.00	50	13	19.70	-	-	-
ADCYAP1R1	0	genome.wustl.edu	37	7	31146206	31146206	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	7	31146206	31146206	G	A	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	69_37n	+1	known	missense	c.1315	p.G439R	1.000	prints_GPCR_2_PACAP_1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	53	0	0.00	86	14	14.00	-	-	-
ATP13A4	0	genome.wustl.edu	37	3	193174938	193174938	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	3	193174938	193174938	G	A	SNP	ATP13A4	ENST00000428352	human	ensembl	69_37n	-1	known	nonsense	c.685	p.Q229*	0.989	pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP13A4	HGNC	ENSG00000127249	60	0	0.00	46	19	29.23	-	-	-
BNC2	0	genome.wustl.edu	37	9	16552596	16552596	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	9	16552596	16552596	C	T	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	missense	c.601	p.E201K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	36	0	0.00	42	12	22.22	-	-	-
LINC00200	0	genome.wustl.edu	37	10	1205771	1205771	+	RNA	SNP	T	T	C			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	10	1205771	1205771	T	C	SNP	LINC00200	ENST00000425630	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	19	0	0.00	17	4	19.05	-	-	-
NPIPL2	0	genome.wustl.edu	37	16	74411912	74411912	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	16	74411912	74411912	G	A	SNP	NPIPL2	ENST00000429990	human	ensembl	69_37n	+1	known	missense	c.41	p.G14E	0.091	pfam_NPIP	pfam_NPIP	-	no_errors	NPIPL2	HGNC	ENSG00000196436	14	0	0.00	13	8	38.10	-	-	-
PRR12	0	genome.wustl.edu	37	19	50098208	50098208	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24W-01A-11D-A17G-09	TCGA-AR-A24W-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	454e7cd4-8424-4cad-8fbb-f69affa5d1bf	781a3f88-4ca5-4f67-bcef-dcfe30dced42	19	50098208	50098208	G	A	SNP	PRR12	ENST00000418929	human	ensembl	69_37n	+1	known	missense	c.616	p.E206K	1.000	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464	24	0	0.00	16	7	30.43	-	-	-
