Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BAG2	0	genome.wustl.edu	37	6	57048818	57048818	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	6	57048818	57048818	C	T	SNP	BAG2	ENST00000370693	human	ensembl	69_37n	+1	known	nonsense	c.466	p.Q156*	1.000	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG2	HGNC	ENSG00000112208	39	0	0.00	45	5	10.00	-	-	-
CARD11	0	genome.wustl.edu	37	7	2962378	2962378	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	7	2962378	2962378	C	T	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	missense	c.2159	p.R720Q	0.027	superfamily_PDZ	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	29	0	0.00	40	6	13.04	-	-	-
CHRNA10	0	genome.wustl.edu	37	11	3691096	3691096	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	11	3691096	3691096	C	T	SNP	CHRNA10	ENST00000250699	human	ensembl	69_37n	-1	known	missense	c.137	p.R46K	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA10	HGNC	ENSG00000129749	59	0	0.00	85	13	13.27	-	-	-
DPP8	0	genome.wustl.edu	37	15	65766607	65766607	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	15	65766607	65766607	G	C	SNP	DPP8	ENST00000341861	human	ensembl	69_37n	-1	known	missense	c.1524	p.I508M	0.998	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603	30	0	0.00	48	7	12.73	-	-	-
KRTAP4-4	0	genome.wustl.edu	37	17	39316500	39316500	+	Silent	SNP	G	G	A			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	17	39316500	39316500	G	A	SNP	KRTAP4-4	ENST00000390661	human	ensembl	69_37n	-1	known	silent	c.444	p.P148	0.986	NULL	NULL	-	no_errors	KRTAP4-4	HGNC	ENSG00000171396	49	0	0.00	67	9	11.84	-	-	-
MIER2	0	genome.wustl.edu	37	19	336103	336103	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	19	336103	336103	G	T	SNP	MIER2	ENST00000264819	human	ensembl	69_37n	-1	known	missense	c.80	p.P27Q	0.879	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER2	HGNC	ENSG00000105556	36	0	0.00	29	6	17.14	-	-	-
MYH4	0	genome.wustl.edu	37	17	10366488	10366488	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	17	10366488	10366488	G	A	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	nonsense	c.823	p.R275*	0.146	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	48	0	0.00	37	7	15.91	-	-	-
MYOZ1	0	genome.wustl.edu	37	10	75391782	75391782	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	10	75391782	75391782	T	A	SNP	MYOZ1	ENST00000359322	human	ensembl	69_37n	-1	known	missense	c.806	p.N269I	1.000	pfam_Calsarcin-bd	pfam_Calsarcin-bd	-	no_errors	MYOZ1	HGNC	ENSG00000177791	55	0	0.00	85	13	13.27	-	-	-
NBPF10	0	genome.wustl.edu	37	1	145323666	145323666	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	1	145323666	145323666	A	G	SNP	NBPF10	ENST00000342960	human	ensembl	69_37n	+1	known	missense	c.3503	p.D1168G	0.004	NULL	pfam_NBPF_dom	-	no_errors	NBPF10	HGNC	ENSG00000163386	62	0	0.00	63	9	12.50	-	-	-
NPAP1	0	genome.wustl.edu	37	15	24922101	24922101	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	15	24922101	24922101	G	C	SNP	NPAP1	ENST00000329468	human	ensembl	69_37n	+1	known	missense	c.1087	p.E363Q	0.001	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823	28	0	0.00	25	4	13.79	-	-	-
OR6K6	0	genome.wustl.edu	37	1	158725034	158725034	+	Silent	SNP	G	G	A			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	1	158725034	158725034	G	A	SNP	OR6K6	ENST00000368144	human	ensembl	69_37n	+1	known	silent	c.429	p.L143	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433	31	0	0.00	43	7	14.00	-	-	-
PCDHB2	0	genome.wustl.edu	37	5	140476634	140476634	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	5	140476634	140476634	G	A	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	+1	known	missense	c.2260	p.E754K	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	62	0	0.00	65	8	10.96	-	-	-
PLAC1	0	genome.wustl.edu	37	X	133700448	133700448	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	X	133700448	133700448	G	C	SNP	PLAC1	ENST00000359237	human	ensembl	69_37n	-1	known	missense	c.265	p.Q89E	0.000	NULL	NULL	-	no_errors	PLAC1	HGNC	ENSG00000170965	67	0	0.00	81	10	10.99	-	-	-
PPM1F	0	genome.wustl.edu	37	22	22277806	22277806	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	22	22277806	22277806	C	T	SNP	PPM1F	ENST00000263212	human	ensembl	69_37n	-1	known	missense	c.1024	p.D342N	0.998	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1F	HGNC	ENSG00000100034	22	0	0.00	24	5	17.24	-	-	-
RRAGD	0	genome.wustl.edu	37	6	90097118	90097118	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	6	90097118	90097118	G	A	SNP	RRAGD	ENST00000369415	human	ensembl	69_37n	-1	known	nonsense	c.340	p.Q114*	1.000	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	-	no_errors	RRAGD	HGNC	ENSG00000025039	46	0	0.00	40	5	11.11	-	-	-
SEC23B	0	genome.wustl.edu	37	20	18526630	18526630	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	20	18526630	18526630	G	C	SNP	SEC23B	ENST00000262544	human	ensembl	69_37n	+1	known	missense	c.1696	p.D566H	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23B	HGNC	ENSG00000101310	80	0	0.00	86	10	10.42	-	-	-
SLC12A6	0	genome.wustl.edu	37	15	34553129	34553129	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	15	34553129	34553129	C	T	SNP	SLC12A6	ENST00000558589	human	ensembl	69_37n	-1	known	missense	c.382	p.E128K	1.000	prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199	37	0	0.00	42	6	12.50	-	-	-
STK33	0	genome.wustl.edu	37	11	8496364	8496364	+	Splice_Site	SNP	C	C	T			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	11	8496364	8496364	C	T	SNP	STK33	ENST00000534493	human	ensembl	69_37n	-1	putative	splice_site	c.1-1	e1-1	0.008	-	-	-	no_errors	STK33	HGNC	ENSG00000130413	56	0	0.00	64	14	17.95	-	-	-
TRPM1	0	genome.wustl.edu	37	15	31339418	31339418	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	15	31339418	31339418	C	T	SNP	TRPM1	ENST00000542188	human	ensembl	69_37n	-1	known	missense	c.1711	p.D571N	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	35	0	0.00	49	12	19.67	-	-	-
WBSCR17	0	genome.wustl.edu	37	7	70885903	70885903	+	Silent	SNP	G	G	T			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	7	70885903	70885903	G	T	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	+1	known	silent	c.774	p.P258	0.086	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	41	0	0.00	47	6	11.32	-	-	-
ZNF648	0	genome.wustl.edu	37	1	182026630	182026630	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	1	182026630	182026630	C	A	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	missense	c.516	p.K172N	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	43	0	0.00	31	4	11.43	-	-	-
ZNF66P	0	genome.wustl.edu	37	19	20989209	20989209	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LH-01A-31D-A18P-09	TCGA-AR-A2LH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	681045b0-3975-4e0f-acdd-3a5e74c3cb8f	a7502dd8-c6dd-4105-b73a-7eaae335746b	19	20989209	20989209	G	A	SNP	ZNF66P	ENST00000425625	human	ensembl	69_37n	+1	known	missense	c.941	p.R314H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF66P	HGNC	ENSG00000160229	8	0	0.00	11	10	47.62	-	-	-
