Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
APOBR	0	genome.wustl.edu	37	16	28507415	28507417	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	16	28507415	28507417	GGA	-	DEL	APOBR	ENST00000564831	human	ensembl	69_37n	+1	known	in_frame_del	c.1053_1055	p.E353in_frame_del	0.000:0.005:0.010	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730	21	0	0.00	21	5	18.52	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950090	16950090	+	RNA	SNP	G	G	A			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	1	16950090	16950090	G	A	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	9	0	0.00	6	4	40.00	-	-	-
DGCR14	0	genome.wustl.edu	37	22	19121812	19121812	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	22	19121812	19121812	G	A	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	missense	c.1328	p.A443V	0.165	NULL	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	95	0	0.00	107	12	10.08	-	-	-
FADS6	0	genome.wustl.edu	37	17	72889676	72889676	+	Silent	SNP	G	G	C			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	17	72889676	72889676	G	C	SNP	FADS6	ENST00000310226	human	ensembl	69_37n	-1	known	silent	c.18	p.P6	0.027	NULL	pfam_Fatty_acid_desaturase-1	-	no_errors	FADS6	HGNC	ENSG00000172782	13	0	0.00	13	5	27.78	-	-	-
SPATA1	0	genome.wustl.edu	37	1	85018772	85018772	+	RNA	DEL	A	A	-			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	1	85018772	85018772	A	-	DEL	SPATA1	ENST00000460286	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPATA1	HGNC	ENSG00000122432	14	0	0.00	4	2	33.33	-	-	-
SSBP3	0	genome.wustl.edu	37	1	54722851	54722851	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	1	54722851	54722851	C	A	SNP	SSBP3	ENST00000371320	human	ensembl	69_37n	-1	known	missense	c.456	p.M152I	1.000	pfam_SSDP_ss-bd	pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP3	HGNC	ENSG00000157216	42	0	0.00	25	4	13.79	-	-	-
TPSAB1	0	genome.wustl.edu	37	16	1291454	1291454	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	16	1291454	1291454	G	A	SNP	TPSAB1	ENST00000562675	human	ensembl	69_37n	+1	known	missense	c.253	p.A85T	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	TPSAB1	HGNC	ENSG00000172236	15	0	0.00	18	7	28.00	-	-	-
YTHDC1	0	genome.wustl.edu	37	4	69204039	69204039	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A2LQ-01A-22D-A18P-09	TCGA-AR-A2LQ-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1949e7b2-9b9a-491d-9f97-3e1490358060	2d6e42d0-34e0-4f7f-819c-303ff154aafa	4	69204039	69204039	T	C	SNP	YTHDC1	ENST00000344157	human	ensembl	69_37n	-1	known	missense	c.92	p.Y31C	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896	69	0	0.00	84	11	11.58	-	-	-
