Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AHNAK2	0	genome.wustl.edu	37	14	105412225	105412225	+	Missense_Mutation	SNP	T	T	G			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	14	105412225	105412225	T	G	SNP	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	missense	c.9563	p.N3188T	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	95	0	0.00	104	14	11.86	-	-	-
APOBR	0	genome.wustl.edu	37	16	28507295	28507295	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	16	28507295	28507295	G	A	SNP	APOBR	ENST00000564831	human	ensembl	69_37n	+1	known	silent	c.933	p.E311	0.000	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730	26	0	0.00	23	4	14.81	-	-	-
ARPC4-TTLL3	0	genome.wustl.edu	37	3	9845592	9845592	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	3	9845592	9845592	G	A	SNP	ARPC4-TTLL3	ENST00000453882	human	ensembl	69_37n	+1	putative	missense	c.298	p.G100R	1.000	pfam_ARPC4	pfam_ARPC4	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ARPC4-TTLL3	HGNC	ENSG00000250151	35	0	0.00	32	5	13.51	-	-	-
CBFB	0	genome.wustl.edu	37	16	67070634	67070634	+	Silent	SNP	C	C	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	16	67070634	67070634	C	A	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	+1	known	silent	c.258	p.V86	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	65	0	0.00	32	23	41.82	-	-	-
CHRD	0	genome.wustl.edu	37	3	184100846	184100846	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	3	184100846	184100846	G	A	SNP	CHRD	ENST00000204604	human	ensembl	69_37n	+1	known	missense	c.1108	p.E370K	1.000	pfam_CHRD,smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	17	0	0.00	12	7	36.84	-	-	-
CPA5	0	genome.wustl.edu	37	7	130003343	130003343	+	Missense_Mutation	SNP	T	T	G			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	7	130003343	130003343	T	G	SNP	CPA5	ENST00000479492	human	ensembl	69_37n	+1	novel	missense	c.62	p.V21G	0.842	NULL	pfam_Peptidase_M14	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPA5	HGNC	ENSG00000158525	60	0	0.00	50	16	24.24	-	-	-
CSH2	0	genome.wustl.edu	37	17	61950968	61950968	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	17	61950968	61950968	C	G	SNP	CSH2	ENST00000392886	human	ensembl	69_37n	-1	known	missense	c.7	p.A3P	0.998	NULL	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH2	HGNC	ENSG00000213218	59	0	0.00	24	13	35.14	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40407987	40407987	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	19	40407987	40407987	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.4734	p.A1578	0.119	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	43	0	0.00	20	10	33.33	-	-	-
GPR125	0	genome.wustl.edu	37	4	22415369	22415369	+	Silent	SNP	G	G	C			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	4	22415369	22415369	G	C	SNP	GPR125	ENST00000334304	human	ensembl	69_37n	-1	known	silent	c.1878	p.L626	0.908	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like	-	no_errors	GPR125	HGNC	ENSG00000152990	104	0	0.00	80	11	12.09	-	-	-
GPR98	0	genome.wustl.edu	37	5	90001311	90001311	+	Missense_Mutation	SNP	T	T	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	5	90001311	90001311	T	A	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	+1	known	missense	c.8481	p.N2827K	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	169	0	0.00	115	41	26.11	-	-	-
IQCB1	0	genome.wustl.edu	37	3	121526220	121526220	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	3	121526220	121526220	C	A	SNP	IQCB1	ENST00000310864	human	ensembl	69_37n	-1	known	missense	c.558	p.M186I	0.144	superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCB1	HGNC	ENSG00000173226	196	0	0.00	150	22	12.79	-	-	-
ITGA1	0	genome.wustl.edu	37	5	52193332	52193332	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	5	52193332	52193332	G	A	SNP	ITGA1	ENST00000282588	human	ensembl	69_37n	+1	known	silent	c.1137	p.Q379	1.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949	79	0	0.00	81	12	12.90	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	12011144	12011144	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	17	12011144	12011144	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	missense	c.584	p.S195L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	308	1	0.32	123	92	42.59	-	-	-
NEB	0	genome.wustl.edu	37	2	152466574	152466574	+	Nonsense_Mutation	SNP	C	C	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	2	152466574	152466574	C	A	SNP	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	nonsense	c.12079	p.E4027*	0.990	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	203	0	0.00	212	32	13.01	-	-	-
ODZ2	0	genome.wustl.edu	37	5	167517656	167517656	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	5	167517656	167517656	G	C	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	+1	known	missense	c.1593	p.Q531H	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	117	0	0.00	79	11	12.22	-	-	-
PCDH9	0	genome.wustl.edu	37	13	67799842	67799842	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	13	67799842	67799842	C	G	SNP	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	missense	c.2731	p.E911Q	1.000	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	55	0	0.00	37	6	13.95	-	-	-
PDE3A	0	genome.wustl.edu	37	12	20787975	20787975	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	12	20787975	20787975	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	+1	known	silent	c.1986	p.E662	0.527	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	97	0	0.00	75	9	10.71	-	-	-
PRAM1	0	genome.wustl.edu	37	19	8564533	8564533	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	19	8564533	8564533	G	A	SNP	PRAM1	ENST00000423345	human	ensembl	69_37n	-1	known	silent	c.159	p.S53	0.000	NULL	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246	19	0	0.00	19	9	32.14	-	-	-
PRDM16	0	genome.wustl.edu	37	1	3313062	3313062	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	3313062	3313062	A	G	SNP	PRDM16	ENST00000270722	human	ensembl	69_37n	+1	known	missense	c.581	p.Y194C	1.000	smart_SET_dom,pfscan_SET_dom	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611	62	0	0.00	34	6	15.00	-	-	-
PTPN14	0	genome.wustl.edu	37	1	214557335	214557335	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	214557335	214557335	G	A	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	silent	c.1863	p.L621	0.919	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	14	0	0.00	8	9	52.94	-	-	-
QSOX1	0	genome.wustl.edu	37	1	180147983	180147983	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	180147983	180147983	G	A	SNP	QSOX1	ENST00000367602	human	ensembl	69_37n	+1	known	silent	c.570	p.L190	1.000	NULL	pfam_Evr1_Alr,pfam_Thioredoxin_domain,superfamily_Evr1_Alr,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX1	HGNC	ENSG00000116260	99	0	0.00	104	14	11.86	-	-	-
RASGRF1	0	genome.wustl.edu	37	15	79296367	79296367	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	15	79296367	79296367	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	69_37n	-1	known	silent	c.2274	p.S758	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	15	0	0.00	10	6	37.50	-	-	-
RIMBP3	0	genome.wustl.edu	37	22	20456978	20456978	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	22	20456978	20456978	C	T	SNP	RIMBP3	ENST00000426804	human	ensembl	69_37n	-1	known	missense	c.4324	p.G1442S	0.000	superfamily_SH3_domain	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	RIMBP3	HGNC	ENSG00000196622	21	0	0.00	4	2	33.33	-	-	-
RPL7	0	genome.wustl.edu	37	8	74204479	74204479	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	8	74204479	74204479	G	A	SNP	RPL7	ENST00000352983	human	ensembl	69_37n	-1	known	silent	c.285	p.I95	1.000	pfam_Ribosomal_L30_ferredoxin-like,superfamily_Ribosomal_L30_ferredoxin-like,tigrfam_Ribosomal_L7_euk	pfam_Ribosomal_L30_N,pfam_Ribosomal_L30_ferredoxin-like,superfamily_Ribosomal_L30_ferredoxin-like,tigrfam_Ribosomal_L7_euk	-	no_errors	RPL7	HGNC	ENSG00000147604	162	1	0.61	140	26	15.66	-	-	-
SHPRH	0	genome.wustl.edu	37	6	146242419	146242419	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	6	146242419	146242419	C	G	SNP	SHPRH	ENST00000367503	human	ensembl	69_37n	-1	known	missense	c.3904	p.E1302Q	1.000	NULL	pfam_SNF2_N,pfam_Histone_H1/H5,superfamily_Znf_FYVE_PHD,superfamily_WW_Rsp5_WWP,smart_Helicase_ATP-bd,smart_Histone_H1/H5,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	147	0	0.00	110	15	11.90	-	-	-
SLC35G1	0	genome.wustl.edu	37	10	95660752	95660752	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	10	95660752	95660752	G	A	SNP	SLC35G1	ENST00000427197	human	ensembl	69_37n	+1	known	silent	c.603	p.V201	0.997	pfam_DMT	pfam_DMT	-	no_errors	SLC35G1	HGNC	ENSG00000176273	114	0	0.00	73	29	28.43	-	-	-
SMCP	0	genome.wustl.edu	37	1	152857160	152857160	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	152857160	152857160	G	A	SNP	SMCP	ENST00000368765	human	ensembl	69_37n	+1	known	missense	c.262	p.E88K	0.000	NULL	NULL	-	no_errors	SMCP	HGNC	ENSG00000163206	41	0	0.00	27	6	18.18	-	-	-
SNX13	0	genome.wustl.edu	37	7	17873801	17873801	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	7	17873801	17873801	C	G	SNP	SNX13	ENST00000428135	human	ensembl	69_37n	-1	novel	missense	c.1471	p.E491Q	1.000	pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,pfscan_Regulat_G_prot_signal	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_Regulat_G_prot_signal,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal	-	no_errors	SNX13	HGNC	ENSG00000071189	55	0	0.00	67	9	11.84	-	-	-
SURF6	0	genome.wustl.edu	37	9	136199031	136199031	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	9	136199031	136199031	G	A	SNP	SURF6	ENST00000372022	human	ensembl	69_37n	-1	known	missense	c.760	p.R254C	1.000	pfam_Surf6	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296	12	0	0.00	2	7	77.78	-	-	-
SYK	0	genome.wustl.edu	37	9	93629418	93629418	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	9	93629418	93629418	G	T	SNP	SYK	ENST00000375746	human	ensembl	69_37n	+1	known	missense	c.852	p.W284C	1.000	pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025	204	0	0.00	161	56	25.81	-	-	-
TNS3	0	genome.wustl.edu	37	7	47344561	47344561	+	Silent	SNP	C	C	T			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	7	47344561	47344561	C	T	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	silent	c.2691	p.G897	1.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	49	0	0.00	40	10	20.00	-	-	-
TOMM34	0	genome.wustl.edu	37	20	43585106	43585106	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	20	43585106	43585106	C	T	SNP	TOMM34	ENST00000372813	human	ensembl	69_37n	-1	known	missense	c.148	p.E50K	0.985	pfscan_TPR-contain_dom	pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772	69	0	0.00	50	8	13.79	-	-	-
TSC22D1	0	genome.wustl.edu	37	13	45148990	45148990	+	Silent	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	13	45148990	45148990	G	A	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	silent	c.1221	p.F407	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	99	0	0.00	87	13	12.87	-	-	-
TSC22D1	0	genome.wustl.edu	37	13	45149901	45149901	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	13	45149901	45149901	G	C	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.310	p.Q104E	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	65	0	0.00	63	12	16.00	-	-	-
TTLL5	0	genome.wustl.edu	37	14	76249634	76249634	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	14	76249634	76249634	C	T	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	+1	known	missense	c.2747	p.S916F	0.051	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	82	0	0.00	94	20	17.39	-	-	-
UBC	0	genome.wustl.edu	37	12	125397950	125397950	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	12	125397950	125397950	C	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.368	p.G123A	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	112	0	0.00	87	12	12.12	-	-	-
UNC5D	0	genome.wustl.edu	37	8	35616880	35616880	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	8	35616880	35616880	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	69_37n	+1	known	missense	c.2206	p.E736K	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death,pfam_Immunoglobulin,superfamily_DEATH-like,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like	-	no_errors	UNC5D	HGNC	ENSG00000156687	185	0	0.00	124	18	12.68	-	-	-
VANGL1	0	genome.wustl.edu	37	1	116233968	116233968	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	1	116233968	116233968	G	T	SNP	VANGL1	ENST00000310260	human	ensembl	69_37n	+1	known	missense	c.1543	p.V515F	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL1	HGNC	ENSG00000173218	70	0	0.00	51	33	39.29	-	-	-
ZFYVE16	0	genome.wustl.edu	37	5	79733498	79733498	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B6-A0WZ-01A-11D-A10G-09	TCGA-B6-A0WZ-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f6b8b1a9-370c-4023-b8bd-934e2a3d913a	a477963b-b0e1-4394-bfa3-cfc26c651ac8	5	79733498	79733498	C	T	SNP	ZFYVE16	ENST00000338008	human	ensembl	69_37n	+1	known	nonsense	c.994	p.Q332*	0.935	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319	114	0	0.00	98	15	13.27	-	-	-
