Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
AGRN	375790	genome.wustl.edu	37	1	979730	979730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_198576.2	+1	validated	p.G722V	0.994	11	0%	88	36.4%	68	48.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Kazal_1,HMMSmart_KAZAL,superfamily_SSF100895
SRM	6723	genome.wustl.edu	37	1	11118893	11118893	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_003132.2	-1	validated	p.P115	0.191	9	0.000	51	0.392	95	48.4%	-	-	-	HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
AGTRAP	57085	genome.wustl.edu	37	1	11808635	11808635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_020350.4	+1	reviewed	p.R111Q	0.999	27	0%	107	39.3%	102	44.1%	unknown(0)	-	-	HMMPfam_AGTRAP,HMMSmart_SM00805
WNT4	54361	genome.wustl.edu	37	1	22456215	22456215	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	ENST00000415567	-1	known	p.R44W	0.580	36	0%	199	38.2%	1	0%	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
ARID1A	8289	genome.wustl.edu	37	1	27100176	27100176	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_006015.4	+1	reviewed	p.Y1324*	1.000	153	0%	230	38.3%	7	28.5%	-	-	-	NULL
BAI2	576	genome.wustl.edu	37	1	32196473	32196473	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001703.2	-1	reviewed	p.P1436	0.443	9	0.000	149	0.403	2	50%	-	-	-	NULL
EDN2	1907	genome.wustl.edu	37	1	41945139	41945139	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001956.3	-1	reviewed	p.R160*	0.002	93	0%	469	41.8%	103	43.6%	-	-	-	NULL
LOC100130667	100130667	genome.wustl.edu	37	1	120165030	120165031	+	In_Frame_Ins	INS	-	-	TCCTCAAGG	rs113983233	byCluster;by1000genomes	TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	XM_001715213.1	+1	model	p.39in_frame_insRSS	0.001:0.001	-	-	-	-	-	-	-	-	-	NULL
TXNIP	10628	genome.wustl.edu	37	1	145441200	145441202	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_006472.3	+1	validated	p.N389in_frame_del	0.602:0.988:1.000	-	-	-	-	-	-	-	-	-	NULL
OR10J3	441911	genome.wustl.edu	37	1	159284020	159284020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001004467.1	-1	provisional	p.Q144K	0.001	158	0%	119	39.5%	0	-	benign(0.005)	tolerated(0.26)	neutral(0.034)	HMMPfam_7tm_1,superfamily_SSF81321
NFASC	23114	genome.wustl.edu	37	1	204943943	204943943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_015090.3	+1	reviewed	p.E528G	1.000	185	0%	264	39.8%	1	0%	possibly_damaging(0.952)	deleterious(0.02)	deleterious(0.778)	HMMPfam_I-set,superfamily_SSF48726
OR2T3	343173	genome.wustl.edu	37	1	248636754	248636754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001005495.1	+1	provisional	p.V35M	0.000	751	0.1%	347	25.6%	0	-	possibly_damaging(0.932)	tolerated(0.12)	deleterious(0.639)	superfamily_SSF81321
SNTG2	54221	genome.wustl.edu	37	2	1168852	1168852	+	Missense_Mutation	SNP	G	G	A	rs145266598	by1000genomes	TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_018968.3	+1	reviewed	p.G192R	0.993	197	0%	329	22.8%	0	-	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	NULL
NOL10	79954	genome.wustl.edu	37	2	10808815	10808815	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_024894.2	-1	validated	p.R167	1.000	172	0%	269	38.7%	6	66.6%	-	-	-	HMMSmart_SM00320,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
DNAH6	1768	genome.wustl.edu	37	2	84846941	84846941	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001370.1	+1	validated	p.A1235	0.108	232	0%	162	39.5%	0	-	-	-	-	HMMPfam_DHC_N2
CHST10	9486	genome.wustl.edu	37	2	101010193	101010194	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_004854.3	-1	validated	p.L195fs	0.212:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Sulfotransfer_2
DNAH7	56171	genome.wustl.edu	37	2	196866449	196866449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_018897.2	-1	validated	p.L375V	0.879	104	0%	167	43.7%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
AQP12A	375318	genome.wustl.edu	37	2	241631576	241631576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_198998.1	+1	provisional	p.A70V	0.020	40	0%	120	40.8%	0	-	benign(0)	tolerated(1)	-	superfamily_MIP
CXXC11	285093	genome.wustl.edu	37	2	242815402	242815402	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_173821.2	+1	validated	p.P565	0.001	7	0.000	98	0.347	0	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	byCluster	TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001098209.1	+1	reviewed	p.S37F	1.000	87	0%	98	35.7%	82	32.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRIQ4	344657	genome.wustl.edu	37	3	169540100	169540100	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001080460.1	+1	provisional	p.K131*	0.000	55	0%	132	72.7%	1	100%	-	-	-	superfamily_SSF52058
ATP13A5	344905	genome.wustl.edu	37	3	193039579	193039579	+	Silent	SNP	C	C	T	rs138029126	by1000genomes	TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_198505.2	-1	provisional	p.S602	0.000	129	0%	128	69.5%	0	-	-	-	-	superfamily_SSF81660,superfamily_SSF81665
SLIT2	9353	genome.wustl.edu	37	4	20530586	20530586	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_004787.1	+1	provisional	p.R493*	1.000	82	0%	224	43.8%	0	-	-	-	-	NULL
UGT2B28	54490	genome.wustl.edu	37	4	70160509	70160509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_053039.1	+1	provisional	p.K524N	0.988	855	0%	486	34.4%	0	-	benign(0.009)	deleterious(0.05)	neutral(0.346)	HMMPfam_UDPGT
FAT4	79633	genome.wustl.edu	37	4	126373506	126373506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_024582.4	+1	validated	p.V3779I	0.996	54	0%	109	47.7%	0	-	possibly_damaging(0.782)	tolerated(0.39)	neutral(0.309)	NULL
SCLT1	132320	genome.wustl.edu	37	4	129857894	129857894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_144643.2	-1	validated	p.A582V	0.008	415	0%	488	37.1%	7	57.1%	benign(0)	tolerated(1)	-	NULL
TRIM2	23321	genome.wustl.edu	37	4	154216614	154216614	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_015271.3	+1	validated	p.A312	0.053	57	0%	96	37.5%	10	40%	-	-	-	HMMSmart_SM00502
FAT1	2195	genome.wustl.edu	37	4	187539091	187539091	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_005245.3	-1	reviewed	p.Y2883*	1.000	396	0%	440	35%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
AHRR	57491	genome.wustl.edu	37	5	376756	376756	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_020731.3	+1	reviewed	p.A96	0.001	45	0%	82	23.2%	2	50%	-	-	-	NULL
ADAMTS12	81792	genome.wustl.edu	37	5	33561194	33561194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_030955.2	-1	reviewed	p.D1355N	1.000	184	0.5%	138	42.8%	0	-	probably_damaging(0.99)	tolerated(0.42)	neutral(0.456)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PIK3R1	5295	genome.wustl.edu	37	5	67589628	67589636	+	In_Frame_Del	DEL	ATAGATTAT	ATAGATTAT	-	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	ATAGATTAT	ATAGATTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_181523.1	+1	reviewed	p.RLY465in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67593407	67593407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_181523.1	+1	reviewed	p.V718A	0.998	243	0%	247	39.7%	183	52.4%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	superfamily_SH2 domain
WDR36	134430	genome.wustl.edu	37	5	110428092	110428092	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_139281.2	+1	reviewed	p.K36*	0.000	30	0%	73	13.7%	1	0%	-	-	-	NULL
PCDHA2	56146	genome.wustl.edu	37	5	140175145	140175145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_018905.2	+1	reviewed	p.S199L	0.003	91	0%	449	42.5%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256177	140256177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_018903.2	+1	reviewed	p.V374M	0.866	121	0%	193	39.9%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB7	56129	genome.wustl.edu	37	5	140553205	140553205	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_018940.2	+1	reviewed	p.S263	0.000	49	0%	249	36.5%	1	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
RNF145	153830	genome.wustl.edu	37	5	158585701	158585701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_144726.1	-1	provisional	p.A685T	0.001	172	0%	214	44.4%	52	46.1%	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
GRM6	2916	genome.wustl.edu	37	5	178419019	178419019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_000843.3	-1	reviewed	p.F190L	1.000	32	0%	145	31%	0	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_ANF_receptor,superfamily_SSF53822
MDGA1	266727	genome.wustl.edu	37	6	37611598	37611598	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	ENST00000418178	-1	known	p.T151M	0.034	65	0%	168	36.9%	1	100%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
HEATR2	54919	genome.wustl.edu	37	7	819722	819722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_017802.3	+1	validated	p.Y791C	0.996	176	0%	373	14.2%	42	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
COG5	10466	genome.wustl.edu	37	7	106938787	106938787	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_006348.3	-1	validated	p.S402	0.998	56	0%	133	12%	8	50%	-	-	-	NULL
MDFIC	29969	genome.wustl.edu	37	7	114655780	114655780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	ENST00000393486	+1	known	p.E178K	1.000	454	0%	383	16.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRBV6-5	28602	genome.wustl.edu	37	7	142180685	142180685	+	Silent	SNP	T	T	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	ENST00000390368	-1	known	p.P58	0.002	710	0%	658	21%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
DUSP4	1846	genome.wustl.edu	37	8	29194924	29194924	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001394.5	-1	reviewed	p.A268	0.065	9	0.000	19	0.526	6	33.3%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
CSMD3	114788	genome.wustl.edu	37	8	113650978	113650978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_198123.1	-1	validated	p.R1158H	1.000	87	0%	159	35.2%	0	-	probably_damaging(0.977)	tolerated(0.13)	deleterious(0.671)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
COL15A1	1306	genome.wustl.edu	37	9	101832109	101832109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001855.3	+1	reviewed	p.A1370T	0.890	132	0%	160	40%	4	0%	possibly_damaging(0.74)	-	-	HMMPfam_Endostatin,superfamily_C-type_lectin_fold
DBH	1621	genome.wustl.edu	37	9	136522345	136522345	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_000787.3	+1	reviewed	p.R572	0.994	47	0%	176	45.5%	0	-	-	-	-	NULL
ST8SIA6	338596	genome.wustl.edu	37	10	17369044	17369044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001004470.1	-1	validated	p.T202A	0.983	221	0%	403	27%	0	-	benign(0)	tolerated(0.86)	neutral(0.001)	HMMPfam_Glyco_transf_29
ANKRD30A	91074	genome.wustl.edu	37	10	37431000	37431000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_052997.2	+1	validated	p.P336R	0.406	53	0%	341	28.2%	0	-	possibly_damaging(0.942)	tolerated(0.11)	deleterious(0.659)	NULL
PTEN	5728	genome.wustl.edu	37	10	89720875	89720875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	ENST00000371953	+1	known	p.K342N	1.000	54	0%	123	87.8%	189	98.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
SLIT1	6585	genome.wustl.edu	37	10	98819267	98819267	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_003061.2	-1	validated	p.I345	0.941	46	0%	263	24%	1	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
SEC31B	25956	genome.wustl.edu	37	10	102269201	102269201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_015490.3	-1	reviewed	p.G91S	1.000	37	0%	154	24.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
SEC23IP	11196	genome.wustl.edu	37	10	121662334	121662334	+	Silent	SNP	G	G	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	ENST00000442952	+1	known	p.G6R	0.000	111	0%	263	12.5%	11	9%	-	-	-	NULL
MUC2	4583	genome.wustl.edu	37	11	1103861	1103861	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_002457.2	+1	reviewed	p.T2716	0.009	7	0.000	101	0.455	0	-	-	-	-	HMMSmart_SM00041,HMMPfam_Cys_knot
HBE1	3046	genome.wustl.edu	37	11	5290828	5290828	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_005330.3	-1	reviewed	p.G57	0.293	271	0%	187	38.5%	0	-	-	-	-	HMMPfam_Globin,superfamily_Globin-like
SMPD1	6609	genome.wustl.edu	37	11	6411936	6411941	+	In_Frame_Del	DEL	GCTGGC	GCTGGC	-	rs71796847		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	GCTGGC	GCTGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_000543.3	+1	reviewed	p.AL40in_frame_del	0.001:0.021:0.346:0.520:0.511:0.351	-	-	-	-	-	-	-	-	-	NULL
NAV2	89797	genome.wustl.edu	37	11	20070621	20070621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_182964.5	+1	validated	p.S1417Y	1.000	151	0%	122	37.7%	26	53.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TNKS1BP1	85456	genome.wustl.edu	37	11	57087854	57087854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_033396.2	-1	validated	p.R143W	0.980	29	0%	147	34.7%	30	36.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SNX32	254122	genome.wustl.edu	37	11	65618530	65618530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_152760.2	+1	validated	p.V203A	1.000	78	1.3%	143	43.4%	0	-	possibly_damaging(0.858)	tolerated(0.2)	neutral(0.380)	HMMPfam_Vps5
PVRL1	5818	genome.wustl.edu	37	11	119548393	119548393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_002855.4	-1	reviewed	p.N202S	0.999	315	0%	392	32.7%	20	35%	probably_damaging(0.972)	tolerated(0.41)	neutral(0.429)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
CHD4	1108	genome.wustl.edu	37	12	6701583	6701583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001273.2	-1	reviewed	p.R975H	1.000	190	0%	212	55.2%	58	62%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N
PRPF40B	25766	genome.wustl.edu	37	12	50028379	50028379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001031698.1	+1	provisional	p.R310H	1.000	45	0%	188	29.8%	13	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain
GDF11	10220	genome.wustl.edu	37	12	56142370	56142370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_005811.3	+1	reviewed	p.T149M	1.000	24	0%	95	41.1%	23	26%	possibly_damaging(0.722)	deleterious(0.01)	deleterious(0.667)	NULL
DGKA	1606	genome.wustl.edu	37	12	56334709	56334709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001345.4	+1	reviewed	p.K349R	0.278	140	0%	529	31%	12	33.3%	benign(0.01)	tolerated(0.47)	neutral(0.011)	NULL
NAV3	89795	genome.wustl.edu	37	12	78513395	78513395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_014903.4	+1	validated	p.R1140H	1.000	125	0%	272	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100431416	100431416	+	Nonstop_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_015054.1	-1	validated	p.*1465K	0.077	156	0%	248	26.2%	15	40%	-	-	-	NULL
MAPKAPK5	8550	genome.wustl.edu	37	12	112308118	112308118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_139078.1	+1	reviewed	p.H146R	1.000	266	0%	506	23.5%	16	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GCN1L1	10985	genome.wustl.edu	37	12	120580478	120580478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_006836.1	-1	validated	p.G1888R	1.000	22	0%	134	17.9%	31	32.2%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_ARM repeat
GJA3	2700	genome.wustl.edu	37	13	20716981	20716981	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_021954.3	-1	reviewed	p.Y149	0.992	14	0%	68	50%	0	-	-	-	-	NULL
FGF9	2254	genome.wustl.edu	37	13	22275357	22275357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_002010.2	+1	reviewed	p.R137I	1.000	64	0%	173	47.4%	32	62.5%	benign(0.34)	tolerated(0.08)	neutral(0.407)	HMMPfam_FGF,HMMSmart_SM00442,PatternScan_HBGF_FGF,superfamily_Cytokine
GPR12	2835	genome.wustl.edu	37	13	27333910	27333910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_005288.3	-1	validated	p.A19T	0.964	12	0%	98	48%	0	-	benign(0.006)	deleterious(0)	neutral(0.445)	superfamily_Family A G protein-coupled receptor-like
ATP7B	540	genome.wustl.edu	37	13	52515284	52515284	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_000053.2	-1	reviewed	p.S1163	0.000	151	0%	371	40.7%	5	40%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
PCDH17	27253	genome.wustl.edu	37	13	58299142	58299142	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001040429.2	+1	reviewed	p.A1065G	0.989	64	0%	79	39.2%	1	0%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103382323	103382323	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	XM_002344085.1	-1	model	p.K6756	0.003	291	0%	109	33%	0	-	-	-	-	NULL
ARID4A	5926	genome.wustl.edu	37	14	58813832	58813832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_002892.3	+1	reviewed	p.R390K	1.000	29	0%	158	35.4%	0	-	benign(0.271)	tolerated(0.96)	neutral(0.029)	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like
TSHR	7253	genome.wustl.edu	37	14	81609929	81609929	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_000369.2	+1	reviewed	p.V509	1.000	1763	0%	1177	39.9%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
EML1	2009	genome.wustl.edu	37	14	100405617	100405617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001008707.1	+1	reviewed	p.D778N	1.000	74	0%	300	40%	9	22.2%	probably_damaging(0.968)	deleterious(0.04)	deleterious(0.759)	superfamily_WD40_like
EXOC3L4	91828	genome.wustl.edu	37	14	103570704	103570704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001077594.1	+1	validated	p.P421L	0.064	7	0.000	29	0.310	0	-	possibly_damaging(0.736)	tolerated(0.06)	deleterious(0.592)	HMMPfam_Sec6
UBE3A	7337	genome.wustl.edu	37	15	25616198	25616198	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_000462.2	-1	reviewed	p.V378fs	1.000	-	-	-	-	-	-	-	-	-	NULL
C15orf52	388115	genome.wustl.edu	37	15	40627575	40627575	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_207380.2	-1	validated	p.W463*	0.000	4	0.000	38	0.316	0	-	-	-	-	NULL
NUSAP1	51203	genome.wustl.edu	37	15	41625167	41625167	+	Silent	SNP	C	C	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_016359.3	+1	validated	p.P4	0.962	36	0%	124	50.8%	24	37.5%	-	-	-	NULL
NARG2	79664	genome.wustl.edu	37	15	60760318	60760319	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_024611.4	-1	validated	p.K117fs	0.970:1.000	-	-	-	-	-	-	-	-	-	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24802677	24802677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_014494.2	+1	reviewed	p.N905S	1.000	70	0%	122	41.8%	2	50%	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
PAPD5	64282	genome.wustl.edu	37	16	50250035	50250035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001040284.2	+1	validated	p.T63A	1.000	293	0%	349	47.3%	2	100%	benign(0.378)	tolerated(0.41)	neutral(0.136)	HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase
CDH8	1006	genome.wustl.edu	37	16	61823296	61823296	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001796.2	-1	reviewed	p.R456	1.000	637	0%	275	35.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CLEC18C	283971	genome.wustl.edu	37	16	70211208	70211208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_173619.2	+1	validated	p.P94L	0.320	113	0%	310	10.3%	0	-	possibly_damaging(0.527)	tolerated(0.08)	deleterious(0.478)	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
DNAH2	146754	genome.wustl.edu	37	17	7667543	7667543	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_020877.2	+1	validated	p.H1096	0.882	731	0%	531	40.9%	0	-	-	-	-	superfamily_Spectrin repeat
MYH1	4619	genome.wustl.edu	37	17	10395851	10395851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_005963.3	-1	reviewed	p.R1901H	1.000	607	0%	398	33.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
TBC1D26	353149	genome.wustl.edu	37	17	15644512	15644512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_178571.4	+1	validated	p.W208L	0.987	101	0%	274	36.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
ULK2	9706	genome.wustl.edu	37	17	19689396	19689396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001142610.1	-1	reviewed	p.P702L	1.000	36	0%	110	43.6%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LIG3	3980	genome.wustl.edu	37	17	33325655	33325655	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_013975.2	+1	reviewed	p.L674	1.000	69	0%	129	25.6%	15	40%	-	-	-	HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A2,superfamily_DNA ligase/mRNA capping enzyme catalytic domain
GRN	2896	genome.wustl.edu	37	17	42428764	42428764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_002087.2	+1	reviewed	p.C290F	1.000	25	0%	201	32.3%	337	39.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00277,superfamily_Granulin repeat
CD300A	11314	genome.wustl.edu	37	17	72470713	72470713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_007261.2	+1	validated	p.T141I	0.002	239	0%	156	38.5%	15	0%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
TRIM47	91107	genome.wustl.edu	37	17	73871014	73871014	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_033452.2	-1	validated	p.I489	0.970	32	0%	151	46.4%	57	35%	-	-	-	NULL
TRIM65	201292	genome.wustl.edu	37	17	73887188	73887188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_173547.2	-1	validated	p.L409P	0.000	7	0.000	53	0.453	6	50%	possibly_damaging(0.46)	tolerated(0.19)	neutral(0.201)	HMMPfam_SPRY,HMMSmart_SM00449
C17orf101	79701	genome.wustl.edu	37	17	80350294	80350294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_024648.2	-1	validated	p.E314K	0.064	49	0%	181	43.1%	60	51.6%	benign(0.002)	tolerated(0.72)	neutral(0.002)	NULL
ELAVL1	1994	genome.wustl.edu	37	19	8032492	8032492	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001419.2	-1	reviewed	p.R205*	0.551	55	0%	376	36.4%	98	21.4%	-	-	-	NULL
SMARCA4	6597	genome.wustl.edu	37	19	11132497	11132497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001128849.1	+1	reviewed	p.R905C	0.989	27	0%	113	44.2%	125	48.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
CPAMD8	27151	genome.wustl.edu	37	19	17091453	17091453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_015692.2	-1	validated	p.C527Y	1.000	57	0%	250	37.6%	9	33.3%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_A2M_N_2
TSHZ3	57616	genome.wustl.edu	37	19	31768806	31768806	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_020856.2	-1	validated	p.P631	0.000	27	0%	80	41.2%	2	0%	-	-	-	NULL
TPRX1	284355	genome.wustl.edu	37	19	48305638	48305638	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_198479.2	-1	validated	p.P210	0.003	68	1.5%	550	14.9%	0	-	-	-	-	NULL
RASIP1	54922	genome.wustl.edu	37	19	49238533	49238533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_017805.2	-1	validated	p.D367N	1.000	16	0%	127	40.9%	5	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
IZUMO1	284359	genome.wustl.edu	37	19	49245131	49245131	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_182575.2	-1	validated	p.V223	0.006	24	0%	119	43.7%	0	-	-	-	-	superfamily_Immunoglobulin
ZNF606	80095	genome.wustl.edu	37	19	58490334	58490334	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_025027.3	-1	validated	p.E572Q	0.325	90	0%	193	18.1%	2	50%	benign(0.112)	tolerated(0.05)	neutral(0.354)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
JPH2	57158	genome.wustl.edu	37	20	42744486	42744486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_020433.4	-1	reviewed	p.R610Q	0.000	6	0.000	55	0.218	0	-	benign(0.089)	tolerated(0.4)	neutral(0.022)	NULL
HSPA13	6782	genome.wustl.edu	37	21	15746370	15746370	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_006948.4	-1	reviewed	p.L328	0.012	125	0%	219	39.3%	7	42.8%	-	-	-	superfamily_Actin-like ATPase domain
CCT8L2	150160	genome.wustl.edu	37	22	17072856	17072856	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_014406.4	-1	validated	p.D195	0.779	34	0%	160	35.6%	0	-	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
RAB36	9609	genome.wustl.edu	37	22	23487629	23487629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_004914.2	+1	validated	p.T26K	0.000	11	0%	23	65.2%	0	-	unknown(0)	-	-	NULL
BAIAP2L2	80115	genome.wustl.edu	37	22	38483155	38483156	+	In_Frame_Ins	INS	-	-	TCATGGGTG	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_025045.4	-1	validated	p.412in_frame_insTPM	0.001:0.006	-	-	-	-	-	-	-	-	-	superfamily_SH3-domain
EP300	2033	genome.wustl.edu	37	22	41572485	41572485	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001429.3	+1	reviewed	p.E1672*	1.000	159	0%	105	40%	24	58.3%	-	-	-	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1
ENSG00000210082	0	genome.wustl.edu	37	MT	2957	2957	+	RNA	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	ENST00000387347	+1	known	NULL	NULL	3	0.000	41	0.732	6976	71.4%	-	-	-	-
VCX3A	51481	genome.wustl.edu	37	X	6451929	6451929	+	Missense_Mutation	SNP	C	C	T	rs72609545		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_016379.3	-1	reviewed	p.V140M	0.197	53	0%	1082	7.4%	0	-	unknown(0)	tolerated(0.07)	-	NULL
DMD	1756	genome.wustl.edu	37	X	32663252	32663252	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_004006.2	-1	reviewed	p.E326	0.994	226	0%	366	36.9%	0	-	-	-	-	NULL
RBM10	8241	genome.wustl.edu	37	X	47034471	47034471	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_005676.3	+1	reviewed	p.R186*	1.000	90	0%	199	41.2%	24	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
IL2RG	3561	genome.wustl.edu	37	X	70328194	70328194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_000206.2	-1	reviewed	p.T286K	0.015	491	0.2%	397	42.1%	11	36.3%	benign(0.071)	tolerated(0.22)	neutral(0.047)	NULL
CXorf26	51260	genome.wustl.edu	37	X	75393431	75393431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_016500.3	+1	predicted	p.E14D	0.763	149	0%	599	13%	27	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101912776	101912776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_001099410.1	+1	reviewed	p.E1312V	0.043	91	0%	176	46%	0	-	benign(0.01)	deleterious(0.03)	neutral(0.365)	HMMPfam_DUF634,superfamily_ARM-type_fold
NRK	203447	genome.wustl.edu	37	X	105168724	105168724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_198465.2	+1	validated	p.G1005S	0.001	501	0.2%	134	27.6%	0	-	benign(0.025)	tolerated(0.24)	neutral(0.038)	NULL
MIR220A	407005	genome.wustl.edu	37	X	122696027	122696027	+	RNA	SNP	G	G	A	rs182728148	by1000genomes	TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	ENST00000384922	-1	known	NULL	0.999	455	0%	324	17.9%	0	-	-	-	-	-
SMARCA1	6594	genome.wustl.edu	37	X	128631826	128631829	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	TTCT	TTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_003069.3	-1	reviewed	p.K499fs	0.999:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
GPC3	2719	genome.wustl.edu	37	X	133119401	133119401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_004484.3	-1	reviewed	p.P26T	1.000	8	0.000	35	0.314	0	-	possibly_damaging(0.795)	deleterious(0)	deleterious(0.743)	HMMPfam_Glypican
MAGEC3	139081	genome.wustl.edu	37	X	140983339	140983339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MG-01A-21D-A10B-09	TCGA-BG-A0MG-10A-01W-A10C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	822ff861-669f-430c-b1f0-dcd75a5141d2	c4e151ae-19e6-4bac-991d-cb9534d80536	NM_138702.1	+1	reviewed	p.G373R	0.000	57	0%	138	21.7%	0	-	unknown(0)	deleterious(0)	-	NULL
