Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NPHP4	261734	genome.wustl.edu	37	1	5933357	5933357	+	Silent	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_015102.2	-1	reviewed	p.A1090	0.000	145	0%	119	41.2%	38	42.1%	-	-	-	NULL
PHC2	1912	genome.wustl.edu	37	1	33838022	33838022	+	Silent	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_198040.2	-1	reviewed	p.Q67	1.000	59	0%	40	35%	3	33.3%	-	-	-	NULL
HOOK1	51361	genome.wustl.edu	37	1	60325916	60325916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000371208	+1	known	p.G483D	0.988	175	0%	131	38.2%	6	66.6%	benign(0.024)	tolerated(0.11)	neutral(0.273)	HMMPfam_HOOK
LMO4	8543	genome.wustl.edu	37	1	87805261	87805261	+	Silent	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006769.3	+1	reviewed	p.S93	0.825	241	0%	211	42.7%	152	36.1%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
CADM3	57863	genome.wustl.edu	37	1	159162507	159162507	+	Silent	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_021189.3	+1	validated	p.L157	0.998	94	0%	81	38.3%	0	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
IGFN1	91156	genome.wustl.edu	37	1	201163353	201163353	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000451870	+1	known	p.S27R	0.990	46	0%	39	10.3%	0	-	benign(0.265)	deleterious(0.01)	neutral(0.433)	superfamily_Immunoglobulin
LIN9	286826	genome.wustl.edu	37	1	226465524	226465524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_173083.2	-1	provisional	p.L228F	1.000	307	0%	220	43.2%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DIRP
RYR2	6262	genome.wustl.edu	37	1	237957284	237957284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001035.2	+1	reviewed	p.V4634I	1.000	163	0%	118	47.5%	0	-	possibly_damaging(0.906)	-	-	NULL
BUB1	699	genome.wustl.edu	37	2	111423848	111423848	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_004336.3	-1	reviewed	p.R317G	0.000	176	0%	169	46.2%	9	33.3%	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
PLA2R1	22925	genome.wustl.edu	37	2	160824123	160824123	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_007366.3	-1	validated	p.L944H	0.000	265	0.8%	251	39.8%	2	0%	benign(0.012)	tolerated(0.07)	neutral(0.320)	NULL
METTL8	79828	genome.wustl.edu	37	2	172248708	172248708	+	Splice_Site	SNP	C	C	G	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000375258	-1	known	e1-1	1.000	102	0%	72	34.7%	0	-	-	-	-	-
TTN	7273	genome.wustl.edu	37	2	179398887	179398887	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000356127	-1	known	p.H31582L	0.984	93	0%	54	42.6%	0	-	benign(0.424)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
SLC40A1	30061	genome.wustl.edu	37	2	190430212	190430212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_014585.5	-1	reviewed	p.G210R	0.995	127	0%	107	40.2%	237	40.5%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	superfamily_MFS general substrate transporter
NYAP2	57624	genome.wustl.edu	37	2	226446755	226446755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_020864.1	+1	validated	p.D208N	1.000	41	0%	40	52.5%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
SCN5A	6331	genome.wustl.edu	37	3	38592678	38592678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001099404.1	-1	reviewed	p.D1729N	1.000	124	0%	110	45.5%	2	0%	possibly_damaging(0.917)	tolerated(0.09)	deleterious(0.664)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CTNNB1	1499	genome.wustl.edu	37	3	41266125	41266125	+	Missense_Mutation	SNP	C	C	T	rs121913413	byCluster	TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001098209.1	+1	reviewed	p.T41I	1.000	98	0%	89	37.1%	180	36.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CADPS	8618	genome.wustl.edu	37	3	62739421	62739421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_003716.3	-1	reviewed	p.R195C	1.000	41	0%	34	38.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
COPG1	22820	genome.wustl.edu	37	3	128985900	128985900	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_016128.3	+1	validated	p.Q501fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
KY	339855	genome.wustl.edu	37	3	134329042	134329042	+	Silent	SNP	G	G	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_178554.4	-1	validated	p.T298	1.000	63	0%	40	40%	2	100%	-	-	-	NULL
STAG1	10274	genome.wustl.edu	37	3	136076647	136076647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_005862.2	-1	reviewed	p.Q994K	1.000	244	0%	168	33.9%	6	0%	benign(0.025)	tolerated(0.19)	neutral(0.051)	NULL
TSC22D2	9819	genome.wustl.edu	37	3	150127626	150127626	+	Silent	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_014779.2	+1	provisional	p.R163	1.000	18	0%	18	66.7%	7	42.8%	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916891	178916891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006218.2	+1	reviewed	p.R93Q	1.000	113	0%	90	55.6%	0	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178927980	178927980	+	Missense_Mutation	SNP	T	T	C	rs121913272		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006218.2	+1	reviewed	p.C420R	1.000	99	0%	82	37.8%	1	100%	probably_damaging(0.992)	tolerated(0.24)	deleterious(0.485)	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
HTR3C	170572	genome.wustl.edu	37	3	183776266	183776266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_130770.2	+1	reviewed	p.T204M	0.000	100	0%	114	43%	0	-	possibly_damaging(0.925)	tolerated(0.18)	neutral(0.429)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
VWA5B2	90113	genome.wustl.edu	37	3	183951154	183951154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_138345.1	+1	provisional	p.P167A	0.998	19	0%	16	37.5%	1	0%	benign(0.014)	tolerated(0.73)	neutral(0.002)	NULL
MUC4	4585	genome.wustl.edu	37	3	195509292	195509292	+	Silent	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_018406.5	-1	reviewed	p.H2925	0.000	292	0.3%	285	33%	25	44%	-	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195512338	195512338	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_018406.5	-1	reviewed	p.T2038S	0.008	508	0%	509	19.4%	14	42.8%	possibly_damaging(0.609)	-	-	NULL
ZNF721	170960	genome.wustl.edu	37	4	437318	437318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_133474.2	-1	validated	p.A313V	0.577	130	0%	120	35%	4	25%	probably_damaging(0.973)	tolerated(0.12)	deleterious(0.675)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288413	100288413	genome.wustl.edu	37	4	53610597	53610597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	XM_002342451.1	-1	model	p.C364F	0.000	394	0%	309	38.8%	7	42.8%	-	-	-	NULL
GYPB	2994	genome.wustl.edu	37	4	144921617	144921617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000283128	-1	known	p.R50W	0.001	50	0%	36	41.7%	0	-	-	-	-	HMMPfam_Glycophorin_A
FAT1	2195	genome.wustl.edu	37	4	187527260	187527260	+	Silent	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_005245.3	-1	reviewed	p.P3438	0.000	165	0%	123	50.4%	63	55.5%	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
IRX2	153572	genome.wustl.edu	37	5	2747696	2747696	+	Silent	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001134222.1	-1	validated	p.G466	1.000	31	0%	30	30%	0	-	-	-	-	NULL
POLR3G	10622	genome.wustl.edu	37	5	89802444	89802444	+	Missense_Mutation	SNP	G	G	A	rs140910392	by1000genomes	TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006467.2	+1	validated	p.D180N	0.082	465	0.2%	357	35.3%	0	-	unknown(0)	tolerated(0.17)	-	NULL
PRR16	51334	genome.wustl.edu	37	5	120022234	120022234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_016644.1	+1	provisional	p.P226S	1.000	165	0%	125	37.6%	2	50%	benign(0.008)	tolerated(0.31)	neutral(0.027)	NULL
PCDHA3	56145	genome.wustl.edu	37	5	140181686	140181686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_018906.2	+1	reviewed	p.I302V	0.876	113	0%	104	42.3%	0	-	benign(0.014)	tolerated(0.17)	neutral(0.059)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA10	56139	genome.wustl.edu	37	5	140237661	140237661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_018901.2	+1	reviewed	p.K676N	0.001	14	0%	11	72.7%	0	-	benign(0.01)	tolerated(0.07)	neutral(0.320)	NULL
PCDHB3	56132	genome.wustl.edu	37	5	140481580	140481580	+	Silent	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_018937.2	+1	reviewed	p.P449	0.000	61	0%	77	45.5%	1	0%	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
ENSG00000251133	0	genome.wustl.edu	37	5	175716639	175716643	+	RNA	DEL	CACAC	CACAC	-	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	CACAC	CACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000505928	-1	novel	NULL	0.275:0.175:0.087:0.040:0.026	-	-	-	-	-	-	-	-	-	-
LMAN2	10960	genome.wustl.edu	37	5	176761353	176761353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006816.2	-1	reviewed	p.T281M	0.995	72	0%	58	46.6%	1000	46.2%	possibly_damaging(0.872)	deleterious(0.03)	deleterious(0.704)	NULL
FLT4	2324	genome.wustl.edu	37	5	180046493	180046494	+	Splice_Site	DEL	AG	AG	-	rs67637889	byCluster;by1000genomes	TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000376868	-1	known	e14+1	0.000:0.001	-	-	-	-	-	-	-	-	-	-
TAAR8	83551	genome.wustl.edu	37	6	132874778	132874778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_053278.1	+1	provisional	p.W316L	1.000	100	0%	73	52.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_SSF81321
GRID2IP	392862	genome.wustl.edu	37	7	6561549	6561549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001145118.1	-1	validated	p.R320Q	1.000	121	0%	93	43%	0	-	probably_damaging(0.994)	tolerated(0.11)	deleterious(0.724)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
CBX3	11335	genome.wustl.edu	37	7	26246057	26246057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_007276.3	+1	reviewed	p.V32M	1.000	241	0%	215	40.9%	39	41%	benign(0.132)	deleterious(0)	neutral(0.456)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
PLOD3	8985	genome.wustl.edu	37	7	100855929	100855929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001084.4	-1	reviewed	p.P296L	1.000	45	0%	28	50%	35	57.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TMEM213	155006	genome.wustl.edu	37	7	138487709	138487709	+	Silent	SNP	C	C	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001085429.1	+1	validated	p.I73	0.997	15	0%	32	46.9%	1	0%	-	-	-	NULL
OR2A2	442361	genome.wustl.edu	37	7	143807098	143807098	+	Silent	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001005480.2	+1	validated	p.T141	0.000	251	0%	224	17%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
RP1	6101	genome.wustl.edu	37	8	55542312	55542312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006269.1	+1	reviewed	p.P1957L	0.067	63	0%	60	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GSDMD	79792	genome.wustl.edu	37	8	144645067	144645067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_024736.6	+1	reviewed	p.P483L	0.000	4	0.000	15	0.533	133	48.1%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
NTRK2	4915	genome.wustl.edu	37	9	87285797	87285797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006180.3	+1	reviewed	p.C45Y	1.000	120	0%	114	45.6%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058
OR13C8	138802	genome.wustl.edu	37	9	107331525	107331525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001004483.1	+1	provisional	p.V26A	0.083	292	0.3%	254	35.4%	0	-	benign(0.122)	tolerated(0.27)	neutral(0.044)	superfamily_SSF81321
FAM129B	64855	genome.wustl.edu	37	9	130271294	130271294	+	Silent	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_022833.2	-1	validated	p.T426	0.005	66	0%	55	38.2%	414	51.4%	-	-	-	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7409699	7409699	+	Silent	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001029880.1	-1	provisional	p.R116	1.000	80	0%	95	25.3%	0	-	-	-	-	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
BMS1	9790	genome.wustl.edu	37	10	43316002	43316002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_014753.3	+1	reviewed	p.R939Q	1.000	37	0%	54	40.7%	18	22.2%	probably_damaging(1)	tolerated(0.39)	deleterious(0.516)	HMMPfam_DUF663
GPRIN2	9721	genome.wustl.edu	37	10	46999867	46999867	+	Silent	SNP	G	G	A	rs41314465	byCluster;byFrequency	TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_014696.3	+1	validated	p.P329	0.000	61	0%	78	17.9%	0	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692916	89692918	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	ATG	ATG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000371953	+1	known	p.M134in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89725042	89725065	+	Splice_Site	DEL	AATTTTCTTTCTCTAGGTGAAGCT	AATTTTCTTTCTCTAGGTGAAGCT	-	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	AATTTTCTTTCTCTAGGTGAAGCT	AATTTTCTTTCTCTAGGTGAAGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000371953	+1	known	e9-1	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
MYOF	26509	genome.wustl.edu	37	10	95121227	95121227	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_013451.3	-1	reviewed	p.R986G	1.000	345	0%	391	58.8%	66	50%	benign(0.153)	deleterious(0.05)	neutral(0.359)	NULL
TRIM8	81603	genome.wustl.edu	37	10	104404616	104404616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_030912.2	+1	validated	p.L81Q	1.000	13	0%	15	40%	51	21.5%	probably_damaging(0.989)	tolerated(0.15)	deleterious(0.680)	NULL
GFRA1	2674	genome.wustl.edu	37	10	118031510	118031510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_005264.4	-1	reviewed	p.P11L	1.000	9	0.000	18	0.389	0	-	unknown(0)	tolerated(0.26)	-	NULL
NLRP14	338323	genome.wustl.edu	37	11	7063747	7063747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_176822.3	+1	reviewed	p.H164N	0.997	166	0%	121	38.8%	0	-	benign(0.129)	tolerated(0.41)	neutral(0.026)	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110477311	110477311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_020809.2	-1	validated	p.R313L	0.999	132	0%	96	42.7%	0	-	possibly_damaging(0.831)	deleterious(0)	deleterious(0.760)	NULL
TMEM136	219902	genome.wustl.edu	37	11	120201041	120201041	+	Silent	SNP	C	C	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000375095	+1	known	p.V185	1.000	121	0%	101	14.9%	4	0%	-	-	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
PANX3	116337	genome.wustl.edu	37	11	124489197	124489197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_052959.2	+1	reviewed	p.R182Q	0.994	90	0%	56	35.7%	0	-	probably_damaging(0.985)	tolerated(0.44)	neutral(0.445)	NULL
NCAPD3	23310	genome.wustl.edu	37	11	134022868	134022868	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_015261.2	-1	validated	p.R1490*	0.147	135	0%	88	35.2%	20	55%	-	-	-	NULL
DUSP16	80824	genome.wustl.edu	37	12	12630240	12630240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_030640.2	-1	reviewed	p.V509M	0.831	58	0%	58	31%	22	54.5%	benign(0.01)	tolerated(0.18)	neutral(0.057)	NULL
KRAS	3845	genome.wustl.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	A	rs121913530	byCluster	TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_033360.2	-1	reviewed	p.G12C	1.000	248	0%	211	40.3%	7	28.5%	benign(0.045)	deleterious(0)	neutral(0.447)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRP1	4035	genome.wustl.edu	37	12	57601857	57601857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_002332.2	+1	reviewed	p.D3966N	1.000	51	0%	42	42.9%	124	20.1%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
ALX1	8092	genome.wustl.edu	37	12	85694951	85694951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006982.2	+1	reviewed	p.A227T	1.000	221	0%	168	31.5%	0	-	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
TMEM132D	121256	genome.wustl.edu	37	12	129569123	129569123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_133448.2	-1	validated	p.R523Q	1.000	90	0%	101	36.6%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
NBEA	26960	genome.wustl.edu	37	13	35736014	35736014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_015678.4	+1	validated	p.R1330H	1.000	224	0%	213	39.4%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	superfamily_ARM repeat
PTMAP5	150928	genome.wustl.edu	37	13	82264218	82264218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000393073	+1	known	p.V6I	0.800	32	0%	35	51.4%	69	0%	-	-	-	HMMPfam_Prothymosin
SLITRK5	26050	genome.wustl.edu	37	13	88328457	88328457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_015567.1	+1	validated	p.G272R	0.999	51	0%	49	46.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00082,superfamily_L domain-like
GPC6	10082	genome.wustl.edu	37	13	94482673	94482673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_005708.3	+1	reviewed	p.Q196K	1.000	108	0%	106	43.4%	1	0%	possibly_damaging(0.659)	tolerated(0.28)	neutral(0.264)	HMMPfam_Glypican
FANCM	57697	genome.wustl.edu	37	14	45658558	45658558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_020937.2	+1	reviewed	p.P1778L	0.000	59	0%	72	31.9%	2	50%	benign(0.026)	tolerated(0.14)	neutral(0.251)	NULL
MARK3	4140	genome.wustl.edu	37	14	103871418	103871418	+	Silent	SNP	G	G	C	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001128918.1	+1	validated	p.T19	0.722	123	0%	115	47.8%	23	26%	-	-	-	NULL
LOC653061	653061	genome.wustl.edu	37	15	23609308	23609311	+	Frame_Shift_Del	DEL	CAGA	CAGA	-	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	CAGA	CAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	XM_002343325.1	+1	model	p.R414fs	0.003:0.004:0.004:0.004	-	-	-	-	-	-	-	-	-	NULL
LOC653061	653061	genome.wustl.edu	37	15	23609313	23609314	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	XM_002343325.1	+1	model	p.G417fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
LOC653061	653061	genome.wustl.edu	37	15	23609317	23609319	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	XM_002343325.1	+1	model	p.G417in_frame_del	0.001:0.004:0.006	-	-	-	-	-	-	-	-	-	NULL
INO80	54617	genome.wustl.edu	37	15	41319796	41319796	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_017553.1	-1	reviewed	p.R1016*	1.000	49	0%	39	53.8%	19	26.3%	-	-	-	NULL
SECISBP2L	9728	genome.wustl.edu	37	15	49293239	49293239	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_014701.2	-1	provisional	p.Q650*	1.000	152	0%	118	44.1%	2	0%	-	-	-	superfamily_SSF55315
RCN2	5955	genome.wustl.edu	37	15	77241491	77241491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_002902.2	+1	reviewed	p.L294F	1.000	146	0%	102	38.2%	14	28.5%	possibly_damaging(0.646)	deleterious(0.01)	deleterious(0.632)	HMMSmart_SM00054
RNF40	9810	genome.wustl.edu	37	16	30774876	30774876	+	Silent	SNP	G	G	C	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_014771.2	+1	reviewed	p.L146	0.962	40	0%	37	35.1%	39	41%	-	-	-	NULL
GINS3	64785	genome.wustl.edu	37	16	58426605	58426605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001126129.1	+1	reviewed	p.V34M	0.997	77	0%	64	28.1%	14	64.2%	possibly_damaging(0.741)	tolerated(0.08)	deleterious(0.572)	HMMPfam_Psf3
ACD	65057	genome.wustl.edu	37	16	67692860	67692860	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001082486.1	-1	reviewed	p.H292fs	0.034	-	-	-	-	-	-	-	-	-	NULL
LGALS9B	284194	genome.wustl.edu	37	17	20370782	20370783	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001042685.1	-1	validated	p.M1fs	0.878:0.831	-	-	-	-	-	-	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29483098	29483098	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001042492.2	+1	reviewed	p.L53*	1.000	198	0%	162	40.7%	1	0%	-	-	-	NULL
MMP28	79148	genome.wustl.edu	37	17	34093678	34093678	+	Silent	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_024302.3	-1	reviewed	p.A468V	1.000	8	0.000	11	0.364	0	-	-	-	-	NULL
FBF1	85302	genome.wustl.edu	37	17	73918029	73918029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001080542.1	-1	provisional	p.S493W	0.000	87	0%	60	38.3%	6	16.6%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
AFMID	125061	genome.wustl.edu	37	17	76201796	76201796	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001145526.1	+1	validated	p.R253*	1.000	90	0%	70	17.1%	7	0%	-	-	-	superfamily_alpha/beta-Hydrolases
AATK	9625	genome.wustl.edu	37	17	79095191	79095191	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001080395.2	-1	reviewed	p.S849R	0.000	19	0%	23	47.8%	0	-	benign(0.412)	deleterious(0)	deleterious(0.578)	NULL
FASN	2194	genome.wustl.edu	37	17	80041514	80041514	+	Silent	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_004104.4	-1	reviewed	p.G1740	0.014	30	0%	32	21.9%	163	42.9%	-	-	-	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
LAMA1	284217	genome.wustl.edu	37	18	6956505	6956516	+	In_Frame_Del	DEL	CAGCTCCAGCTC	CAGCTCCAGCTC	-	rs11270496	byCluster;by1000genomes	TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	CAGCTCCAGCTC	CAGCTCCAGCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000344342	-1	known	p.GAGA189in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.002:0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
SLC35G4	646000	genome.wustl.edu	37	18	11610212	11610212	+	Silent	SNP	G	G	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	XM_928960.2	+1	model	p.G206	0.991	140	0%	121	31.4%	0	-	-	-	-	NULL
MAPK4	5596	genome.wustl.edu	37	18	48255562	48255562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_002747.3	+1	reviewed	p.R368W	0.997	30	0%	25	48%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
MFSD12	126321	genome.wustl.edu	37	19	3546365	3546365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_021731.2	-1	validated	p.A361V	0.170	17	0%	17	41.2%	217	34.1%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
HPN	3249	genome.wustl.edu	37	19	35557170	35557170	+	Silent	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_002151.2	+1	reviewed	p.S411	0.995	68	0%	39	41%	10	70%	-	-	-	NULL
ATP4A	495	genome.wustl.edu	37	19	36051399	36051399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_000704.2	-1	reviewed	p.A218V	0.972	66	0%	88	36.4%	0	-	benign(0.016)	tolerated(0.12)	neutral(0.261)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
ZNF793	390927	genome.wustl.edu	37	19	38028335	38028335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001013659.2	+1	validated	p.D259Y	0.947	138	0%	134	51.5%	2	0%	benign(0.313)	deleterious(0.01)	deleterious(0.503)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000230510	0	genome.wustl.edu	37	19	47030212	47030212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000414155	-1	known	p.V66M	1.000	34	0%	38	60.5%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_PPP5
EIF2S2	8894	genome.wustl.edu	37	20	32677652	32677652	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_003908.3	-1	reviewed	p.R296G	1.000	259	0%	195	43.6%	267	35.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_eIF-5_eIF-2B,HMMSmart_SM00653,superfamily_Zinc-binding domain of translation initiation factor 2 beta
TIAM1	7074	genome.wustl.edu	37	21	32496840	32496840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_003253.2	-1	validated	p.V1436M	1.000	117	0%	78	37.2%	3	33.3%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
DYRK1A	1859	genome.wustl.edu	37	21	38865409	38865409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_001396.3	+1	reviewed	p.G348R	1.000	313	0%	246	39.8%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TXNRD2	10587	genome.wustl.edu	37	22	19864692	19864692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006440.3	-1	reviewed	p.V504A	1.000	18	0%	22	54.5%	75	52%	possibly_damaging(0.765)	deleterious(0)	deleterious(0.728)	HMMPfam_Pyr_redox_dim,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain
ENSG00000215615	0	genome.wustl.edu	37	GL000218.1	39934	39934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000400681	-1	known	p.R128L	NULL	1815	1.2%	1418	16.7%	60	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tektin
ENSG00000210082	0	genome.wustl.edu	37	MT	2553	2553	+	RNA	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000387347	+1	known	NULL	NULL	251	0%	539	18.6%	8006	17.9%	-	-	-	-
GTPBP6	8225	genome.wustl.edu	37	X	229480	229480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000429643	-1	known	p.T84M	0.070	63	0%	55	36.4%	299	39.4%	benign(0.015)	deleterious(0.01)	neutral(0.406)	NULL
OFD1	8481	genome.wustl.edu	37	X	13769457	13769457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_003611.2	+1	reviewed	p.Y342C	0.998	208	0%	145	39.3%	1	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SYN1	6853	genome.wustl.edu	37	X	47435550	47435550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_006950.3	-1	reviewed	p.G380R	1.000	125	0%	127	39.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
AR	367	genome.wustl.edu	37	X	66941743	66941743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_000044.2	+1	reviewed	p.G796V	1.000	168	0%	175	33.1%	9	100%	probably_damaging(0.988)	tolerated(0.83)	neutral(0.438)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
NKRF	55922	genome.wustl.edu	37	X	118724250	118724250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_017544.3	-1	reviewed	p.V380M	1.000	132	0%	122	22.1%	12	58.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
MAP7D3	79649	genome.wustl.edu	37	X	135313852	135313852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	NM_024597.3	-1	reviewed	p.A422T	0.000	99	0%	82	46.3%	0	-	benign(0.062)	tolerated(0.45)	neutral(0.016)	NULL
MIR224	407009	genome.wustl.edu	37	X	151127070	151127070	+	RNA	SNP	C	C	A	novel		TCGA-BG-A187-01A-11D-A12J-09	TCGA-BG-A187-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	944c21c1-52b3-4e91-a82c-af28138c2aa8	e7343d8e-55c0-4cc6-9da8-c6a070749af2	ENST00000384889	-1	known	NULL	0.684	290	0%	228	42.1%	0	-	-	-	-	-
