Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
HSPG2	3339	genome.wustl.edu	37	1	22161377	22161377	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_005529.5	-1	reviewed	p.R3485C	0.013	27	0%	35	51.4%	234	39.3%	-	-	-	NULL
AIM1L	55057	genome.wustl.edu	37	1	26650667	26650667	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000308182	-1	known	p.T636M	0.921	46	0%	30	63.3%	3	66.6%	-	-	-	HMMSmart_SM00458,superfamily_Ricin B-like lectins
ARID1A	8289	genome.wustl.edu	37	1	27099947	27099947	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_006015.4	+1	reviewed	p.R1276*	1.000	76	0%	72	61.1%	13	53.8%	-	-	-	NULL
ZMPSTE24	10269	genome.wustl.edu	37	1	40758147	40758147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_005857.3	+1	reviewed	p.R412S	1.000	133	0%	132	29.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M48
SZT2	23334	genome.wustl.edu	37	1	43904411	43904411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_015284.2	+1	predicted	p.R1285C	1.000	70	0%	85	35.3%	19	31.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPF1	80135	genome.wustl.edu	37	1	84945031	84945031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_025065.6	+1	validated	p.E23K	0.437	38	0%	40	40%	1	0%	unknown(0)	tolerated(0.13)	-	NULL
CELSR2	1952	genome.wustl.edu	37	1	109812174	109812174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001408.2	+1	reviewed	p.R2314Q	0.999	32	0%	33	42.4%	29	44.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NES	10763	genome.wustl.edu	37	1	156639378	156639378	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000295582	-1	known	p.C429S	0.006	53	0%	35	14.3%	27	0%	-	-	-	NULL
SPTA1	6708	genome.wustl.edu	37	1	158627401	158627401	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_003126.2	-1	reviewed	p.R891*	0.996	153	0%	193	31.1%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PIK3C2B	5287	genome.wustl.edu	37	1	204438551	204438551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_002646.3	-1	reviewed	p.Y127C	1.000	155	0%	195	35.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDK18	5129	genome.wustl.edu	37	1	205498505	205498505	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_212503.2	+1	validated	p.T406P	0.818	29	0%	20	20%	13	0%	benign(0)	tolerated(1)	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RYR2	6262	genome.wustl.edu	37	1	237617760	237617760	+	Silent	SNP	A	A	C	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001035.2	+1	reviewed	p.L454	0.946	166	0%	161	30.4%	0	-	-	-	-	HMMPfam_RYDR_ITPR
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_006218.2	+1	reviewed	p.H1047R	1.000	128	0%	149	27.5%	4	25%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMSmart_PI3Kc,superfamily_Kinase_like
CENPE	1062	genome.wustl.edu	37	4	104070072	104070072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001813.2	-1	validated	p.V1258I	0.003	304	0%	440	29.8%	0	-	benign(0.036)	tolerated(0.88)	neutral(0.002)	NULL
RXFP3	51289	genome.wustl.edu	37	5	33937741	33937741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_016568.3	+1	validated	p.A299V	0.416	27	0%	25	52%	0	-	benign(0)	tolerated(0.86)	neutral(0.001)	HMMPfam_7tm_1,superfamily_SSF81321
HIST1H2BI	8346	genome.wustl.edu	37	6	26273260	26273260	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_003525.2	+1	reviewed	p.V19	1.000	316	0%	216	33.3%	2	0%	-	-	-	superfamily_Histone-fold
POLH	5429	genome.wustl.edu	37	6	43581941	43581941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_006502.2	+1	reviewed	p.L597M	0.207	88	0%	92	37%	8	50%	benign(0.369)	tolerated(0.13)	neutral(0.370)	NULL
TRAM2	9697	genome.wustl.edu	37	6	52370412	52370412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_012288.3	-1	reviewed	p.N287S	1.000	128	0%	96	29.2%	7	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
TCF21	6943	genome.wustl.edu	37	6	134210685	134210685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_003206.3	+1	reviewed	p.Q50H	0.986	38	0%	37	27%	2	0%	benign(0.035)	tolerated(0.11)	neutral(0.274)	NULL
PBK	55872	genome.wustl.edu	37	8	27679999	27679999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_018492.2	-1	reviewed	p.R101H	1.000	131	0%	188	29.3%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Kinase_like,HMMPfam_Pkinase
SOX17	64321	genome.wustl.edu	37	8	55372528	55372529	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_022454.3	+1	reviewed	p.Y406fs	0.784:0.998	-	-	-	-	-	-	-	-	-	NULL
C8orf83	286144	genome.wustl.edu	37	8	93904266	93904266	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000378861	-1	known	p.R33P	1.000	433	0%	521	27.1%	2	0%	possibly_damaging(0.596)	deleterious(0.01)	deleterious(0.612)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100673680	100673680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_017890.3	+1	reviewed	p.F2028L	1.000	115	0%	128	28.9%	1	100%	benign(0)	tolerated(1)	-	NULL
PABPC1	26986	genome.wustl.edu	37	8	101730064	101730064	+	Missense_Mutation	SNP	G	G	T	rs72681442	byCluster;byFrequency;by1000genomes	TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_002568.3	-1	validated	p.T147K	1.000	280	0%	268	31.3%	176	33.5%	benign(0.211)	deleterious(0)	neutral(0.465)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
CSMD3	114788	genome.wustl.edu	37	8	113519049	113519049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_198123.1	-1	validated	p.G1589E	1.000	158	0%	177	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ATAD2	29028	genome.wustl.edu	37	8	124369859	124369860	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_014109.3	-1	reviewed	p.D500fs	0.975:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
INSL4	3641	genome.wustl.edu	37	9	5233806	5233806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_002195.1	+1	reviewed	p.R117C	0.000	141	0%	160	32.5%	0	-	possibly_damaging(0.451)	deleterious(0)	deleterious(0.592)	NULL
GNE	10020	genome.wustl.edu	37	9	36217419	36217419	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001128227.1	-1	reviewed	p.P735	0.802	130	0%	120	30.8%	42	52.3%	-	-	-	superfamily_SSF53067
MORN5	254956	genome.wustl.edu	37	9	124936902	124936902	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_198469.2	+1	validated	p.N145	0.972	91	0%	108	29.6%	84	23.8%	-	-	-	NULL
FAM208B	54906	genome.wustl.edu	37	10	5789003	5789003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_017782.4	+1	validated	p.D1207N	0.000	65	0%	90	22.2%	10	30%	benign(0.378)	tolerated(0.39)	neutral(0.137)	NULL
RBP3	5949	genome.wustl.edu	37	10	48383962	48383962	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_002900.2	-1	reviewed	p.S1090	0.950	151	0%	180	36.1%	0	-	-	-	-	HMMPfam_Peptidase_S41,HMMSmart_SM00245,superfamily_ClpP/crotonase
WDFY4	57705	genome.wustl.edu	37	10	50028335	50028335	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000312002	+1	known	p.R945*	0.000	41	0%	56	23.2%	1	0%	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692986	89692989	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000371953	+1	known	p.V158fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692996	89692996	+	Silent	SNP	C	C	G	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000371953	+1	known	p.T160	1.000	79	0%	149	45%	4	0%	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720784	89720784	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000371953	+1	known	p.D312fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
HTR7	3363	genome.wustl.edu	37	10	92508669	92508669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_019859.3	-1	reviewed	p.R408W	1.000	85	0%	128	26.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
OR52W1	120787	genome.wustl.edu	37	11	6220833	6220833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001005178.1	+1	provisional	p.R127H	1.000	99	0%	78	28.2%	0	-	possibly_damaging(0.917)	deleterious(0.01)	deleterious(0.774)	HMMPfam_7tm_1,superfamily_SSF81321
SLC43A1	8501	genome.wustl.edu	37	11	57256834	57256834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_003627.4	-1	provisional	p.R409C	0.990	514	0%	425	26.6%	144	38.8%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_MFS general substrate transporter
NAALADL1	10004	genome.wustl.edu	37	11	64820735	64820735	+	Missense_Mutation	SNP	C	C	T	rs182545269	by1000genomes	TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_005468.2	-1	validated	p.V385I	1.000	25	0%	11	63.6%	0	-	benign(0.019)	deleterious(0.01)	neutral(0.407)	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
GRIN2B	2904	genome.wustl.edu	37	12	13715927	13715927	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_000834.3	-1	reviewed	p.S1415	0.997	54	0%	39	38.5%	0	-	-	-	-	HMMPfam_NMDAR2_C
PYROXD1	79912	genome.wustl.edu	37	12	21605039	21605039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_024854.3	+1	validated	p.A147S	0.999	148	0%	141	27%	0	-	possibly_damaging(0.854)	tolerated(0.13)	deleterious(0.582)	HMMPfam_Pyr_redox_2,superfamily_SSF51905
KLHDC5	57542	genome.wustl.edu	37	12	27950717	27950717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_020782.1	+1	validated	p.V379A	0.872	26	0%	24	37.5%	27	29.6%	benign(0.009)	tolerated(0.85)	neutral(0.001)	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
MON2	23041	genome.wustl.edu	37	12	62926421	62926421	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_015026.2	+1	validated	p.S535*	0.963	172	0%	204	38.7%	1	0%	-	-	-	NULL
TCTN2	79867	genome.wustl.edu	37	12	124158223	124158223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_024809.3	+1	validated	p.T110I	0.891	268	0%	289	28.7%	32	28.1%	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	NULL
POLE	5426	genome.wustl.edu	37	12	133237689	133237689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_006231.2	-1	validated	p.R976S	1.000	84	0%	80	38.8%	7	42.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DNA_pol_B,superfamily_SSF56672
FLT3	2322	genome.wustl.edu	37	13	28636099	28636099	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_004119.2	-1	reviewed	p.L91	0.993	97	0%	112	36.6%	0	-	-	-	-	NULL
KATNAL1	84056	genome.wustl.edu	37	13	30829608	30829608	+	Silent	SNP	A	A	G	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001014380.1	-1	validated	p.Y156	0.000	386	0%	343	32.1%	4	0%	-	-	-	NULL
KATNAL1	84056	genome.wustl.edu	37	13	30854267	30854267	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001014380.1	-1	validated	p.V86fs	1.000	-	-	-	-	-	-	-	-	-	NULL
NBEA	26960	genome.wustl.edu	37	13	35619115	35619115	+	Silent	SNP	C	C	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_015678.4	+1	validated	p.A186	1.000	234	0%	167	25.1%	1	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_ARM repeat
OR10G2	26534	genome.wustl.edu	37	14	22102439	22102439	+	Missense_Mutation	SNP	C	C	T	rs41361344	byCluster;byFrequency	TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001005466.1	-1	validated	p.R187H	0.202	118	0%	102	34.3%	0	-	benign(0.008)	tolerated(0.43)	neutral(0.013)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYH7	4625	genome.wustl.edu	37	14	23886119	23886119	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_000257.2	-1	reviewed	p.E1534	0.989	71	0%	56	17.9%	0	-	-	-	-	HMMPfam_Myosin_tail_1
EML1	2009	genome.wustl.edu	37	14	100367320	100367320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001008707.1	+1	reviewed	p.V337I	1.000	577	0%	495	29.1%	7	42.8%	benign(0.07)	tolerated(0.29)	neutral(0.034)	HMMSmart_WD40,superfamily_WD40_like
FAM98B	283742	genome.wustl.edu	37	15	38766434	38766434	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_173611.2	+1	validated	p.R222*	0.862	246	0%	263	31.6%	30	0%	-	-	-	HMMPfam_DUF2465
HERC1	8925	genome.wustl.edu	37	15	63901410	63901410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_003922.3	-1	reviewed	p.P4819L	1.000	69	0%	72	30.6%	73	26%	probably_damaging(0.999)	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
LRRC49	54839	genome.wustl.edu	37	15	71276521	71276521	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_017691.2	+1	validated	p.R365T	0.010	146	0%	172	26.2%	13	61.5%	benign(0.03)	deleterious(0.01)	neutral(0.407)	NULL
FBXO22	26263	genome.wustl.edu	37	15	76206487	76206487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_147188.1	+1	reviewed	p.L135P	1.000	166	0%	187	27.3%	19	36.8%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
PHKG2	5261	genome.wustl.edu	37	16	30767997	30767997	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_000294.2	+1	reviewed	p.G296	1.000	32	0%	32	46.9%	105	43.8%	-	-	-	superfamily_Kinase_like
C17orf76-AS1	125144	genome.wustl.edu	37	17	16342622	16342622	+	RNA	SNP	G	G	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NR_027159.1	+1	predicted	NULL	0.000	16	0%	22	22.7%	1	100%	-	-	-	-
LSM12	124801	genome.wustl.edu	37	17	42117582	42117582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_152344.3	-1	validated	p.Q101E	1.000	78	0%	108	25.9%	14	42.8%	benign(0.059)	tolerated(0.27)	neutral(0.038)	HMMPfam_AD
LOC729774	729774	genome.wustl.edu	37	18	14361688	14361688	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	XM_001131264.2	-1	model	p.P97	0.012	55	0%	40	35%	0	-	-	-	-	NULL
NOL4	8715	genome.wustl.edu	37	18	31538220	31538220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_003787.3	-1	validated	p.R407W	1.000	167	0.6%	139	38.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GIPC1	10755	genome.wustl.edu	37	19	14589340	14589340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_005716.2	-1	validated	p.P297L	0.998	39	0%	44	31.8%	191	52.3%	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	NULL
DDX49	54555	genome.wustl.edu	37	19	19035727	19035727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000438170	+1	known	p.T223I	1.000	49	0%	37	32.4%	155	43.2%	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00490
NOVA2	4858	genome.wustl.edu	37	19	46457128	46457128	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_002516.2	-1	validated	p.K102	1.000	429	0%	348	28.2%	3	0%	-	-	-	HMMSmart_KH,superfamily_SSF54791
NUCB1	4924	genome.wustl.edu	37	19	49407659	49407659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_006184.5	+1	reviewed	p.T64M	0.996	100	0%	66	21.2%	222	25.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FOXA2	3170	genome.wustl.edu	37	20	22563165	22563165	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_021784.4	-1	reviewed	p.W239R	1.000	53	0%	45	31.1%	49	48.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
DHX35	60625	genome.wustl.edu	37	20	37617472	37617472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_021931.2	+1	reviewed	p.A121V	1.000	118	0%	111	21.6%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
NCAM2	4685	genome.wustl.edu	37	21	22804570	22804570	+	Silent	SNP	C	C	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_004540.2	+1	reviewed	p.I541	0.999	134	0%	170	25.3%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ERG	2078	genome.wustl.edu	37	21	39763612	39763612	+	Silent	SNP	C	C	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001136154.1	-1	validated	p.V287	1.000	179	0%	194	22.7%	8	0%	-	-	-	NULL
LSS	4047	genome.wustl.edu	37	21	47630623	47630623	+	Silent	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_001001438.2	-1	reviewed	p.F391	1.000	101	0%	91	38.5%	9	33.3%	-	-	-	superfamily_Terp_cyc_toroid
ENSG00000211459	0	genome.wustl.edu	37	MT	1552	1552	+	RNA	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000389680	+1	known	NULL	NULL	24	0%	17	52.9%	763	81.1%	-	-	-	-
ZNF645	158506	genome.wustl.edu	37	X	22291376	22291376	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_152577.2	+1	provisional	p.Y90N	0.000	60	0%	80	41.2%	0	-	probably_damaging(0.982)	tolerated(0.11)	deleterious(0.698)	HMMSmart_RING,superfamily_SSF57850
CYSLTR1	10800	genome.wustl.edu	37	X	77528547	77528547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_006639.2	-1	reviewed	p.G233R	0.998	185	0%	201	27.4%	0	-	benign(0.01)	tolerated(0.86)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RPL36A	6173	genome.wustl.edu	37	X	100650475	100650475	+	Silent	SNP	T	T	G	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	ENST00000392994	+1	known	p.S110	0.001	16	0%	26	19.2%	0	-	-	-	-	NULL
SMARCA1	6594	genome.wustl.edu	37	X	128624133	128624133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_003069.3	-1	reviewed	p.R618C	1.000	250	0%	294	26.2%	32	0%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC644717	644717	genome.wustl.edu	37	X	134811969	134811969	+	Silent	SNP	C	C	T	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	XM_002343850.1	-1	model	p.T156	0.000	251	0%	213	25.4%	0	-	-	-	-	NULL
MAGEA6	4105	genome.wustl.edu	37	X	151870061	151870061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A18A-01A-21D-A12J-09	TCGA-BG-A18A-10A-01D-A12J-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d6bf02e7-5681-4864-bc0e-be5548421799	c57d0d9d-44d7-4f6e-819e-6831ddfe45f5	NM_005363.2	+1	reviewed	p.V251M	0.037	263	0%	264	28.8%	0	-	possibly_damaging(0.515)	deleterious(0)	deleterious(0.618)	HMMPfam_MAGE
