Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAM21	0	genome.wustl.edu	37	14	70924294	70924294	+	Silent	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	70924294	70924294	C	T	SNP	ADAM21	ENST00000267499	human	ensembl	69_37n	+1	known	silent	c.78	p.S26	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	138	0	0.00	244	38	13.48	-	-	-
AKAP14	0	genome.wustl.edu	37	X	119037537	119037537	+	Silent	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	X	119037537	119037537	C	T	SNP	AKAP14	ENST00000371431	human	ensembl	69_37n	+1	known	silent	c.249	p.D83	0.000	NULL	NULL	-	no_errors	AKAP14	HGNC	ENSG00000186471	36	0	0.00	82	23	21.90	-	-	-
ANKRD36BP2	0	genome.wustl.edu	37	2	89100821	89100824	+	Splice_Site	DEL	AAGT	AAGT	-			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	2	89100821	89100824	AAGT	-	DEL	ANKRD36BP2	ENST00000393515	human	ensembl	69_37n	+1	known	splice_site_del	c.NULL	NULL	0.865:0.869:0.868:0.860	-	-	-	no_errors	ANKRD36BP2	HGNC	ENSG00000230006	26	0	0.00	41	6	12.77	-	-	-
CORIN	0	genome.wustl.edu	37	4	47839941	47839941	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	4	47839941	47839941	G	A	SNP	CORIN	ENST00000273857	human	ensembl	69_37n	-1	known	missense	c.26	p.P9L	0.004	pirsf_Peptidase_S1A_corin	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1_S6,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CORIN	HGNC	ENSG00000145244	56	0	0.00	48	22	31.43	-	-	-
CREB5	0	genome.wustl.edu	37	7	28848830	28848830	+	Silent	SNP	G	G	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	7	28848830	28848830	G	A	SNP	CREB5	ENST00000357727	human	ensembl	69_37n	+1	known	silent	c.1053	p.Q351	1.000	pirsf_TF_cAMP-dep	pfam_bZIP_1,pfam_bZIP_2,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	CREB5	HGNC	ENSG00000146592	55	0	0.00	66	10	13.16	-	-	-
DCLRE1C	0	genome.wustl.edu	37	10	14961809	14961809	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	10	14961809	14961809	A	G	SNP	DCLRE1C	ENST00000378278	human	ensembl	69_37n	-1	known	missense	c.1084	p.S362P	0.915	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457	99	0	0.00	121	27	18.24	-	-	-
DDB1	0	genome.wustl.edu	37	11	61093159	61093160	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	11	61093159	61093160	-	C	INS	DDB1	ENST00000301764	human	ensembl	69_37n	-1	known	frame_shift_ins	c.686_685	p.A229fs	1.000:1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	14	0	0.00	34	5	12.82	-	-	-
DNAH1	0	genome.wustl.edu	37	3	52417430	52417430	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	3	52417430	52417430	T	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	+1	known	missense	c.7970	p.I2657N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	18	0	0.00	13	19	59.38	-	-	-
EHMT2	0	genome.wustl.edu	37	6	31864886	31864887	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	6	31864886	31864887	-	C	INS	EHMT2	ENST00000395728	human	ensembl	69_37n	-1	known	frame_shift_ins	c.94_93	p.P31fs	0.000:0.001	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371	13	0	0.00	17	4	19.05	-	-	-
ELAVL3	0	genome.wustl.edu	37	19	11577604	11577605	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	19	11577604	11577605	-	C	INS	ELAVL3	ENST00000359227	human	ensembl	69_37n	-1	known	frame_shift_ins	c.48_47	p.A18fs	1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361	8	0	0.00	33	11	25.00	-	-	-
ESR1	0	genome.wustl.edu	37	6	152201810	152201810	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	6	152201810	152201810	C	T	SNP	ESR1	ENST00000206249	human	ensembl	69_37n	+1	known	missense	c.664	p.P222S	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831	68	0	0.00	83	44	34.65	-	-	-
GGPS1	0	genome.wustl.edu	37	1	235505826	235505826	+	Silent	SNP	A	A	G			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	235505826	235505826	A	G	SNP	GGPS1	ENST00000282841	human	ensembl	69_37n	+1	known	silent	c.642	p.S214	0.976	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	GGPS1	HGNC	ENSG00000152904	106	0	0.00	358	46	11.39	-	-	-
HIST1H2BB	0	genome.wustl.edu	37	6	26043672	26043672	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	6	26043672	26043672	C	T	SNP	HIST1H2BB	ENST00000357905	human	ensembl	69_37n	-1	known	missense	c.214	p.E72K	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BB	HGNC	ENSG00000196226	83	0	0.00	80	47	37.01	-	-	-
HNF4A	0	genome.wustl.edu	37	20	43031282	43031282	+	Silent	SNP	G	G	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	20	43031282	43031282	G	A	SNP	HNF4A	ENST00000372920	human	ensembl	69_37n	+1	known	silent	c.204	p.G68	0.000	NULL	NULL	-	no_errors	HNF4A	HGNC	ENSG00000101076	11	0	0.00	17	9	34.62	-	-	-
HOXB3	0	genome.wustl.edu	37	17	46629736	46629737	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	17	46629736	46629737	-	G	INS	HOXB3	ENST00000311626	human	ensembl	69_37n	-1	known	frame_shift_ins	c.101_100	p.Q34fs	1.000:1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXB3	HGNC	ENSG00000120093	17	0	0.00	13	3	18.75	-	-	-
IGHV4-28	0	genome.wustl.edu	37	14	106780691	106780691	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	106780691	106780691	C	T	SNP	IGHV4-28	ENST00000390612	human	ensembl	69_37n	-1	known	missense	c.173	p.R58Q	0.694	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGHV4-28	HGNC	ENSG00000211952	275	0	0.00	356	63	15.00	-	-	-
IQCF1	0	genome.wustl.edu	37	3	51929268	51929268	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	3	51929268	51929268	G	A	SNP	IQCF1	ENST00000310914	human	ensembl	69_37n	-1	known	missense	c.256	p.R86W	0.067	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF1	HGNC	ENSG00000173389	95	0	0.00	83	67	44.67	-	-	-
LINC00516	0	genome.wustl.edu	37	14	19904366	19904366	+	RNA	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	19904366	19904366	C	T	SNP	LINC00516	ENST00000549877	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00516	HGNC	ENSG00000215394	12	0	0.00	37	15	28.85	-	-	-
LRIT1	0	genome.wustl.edu	37	10	85991725	85991725	+	Silent	SNP	A	A	G			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	10	85991725	85991725	A	G	SNP	LRIT1	ENST00000372105	human	ensembl	69_37n	-1	known	silent	c.1830	p.F610	0.003	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRIT1	HGNC	ENSG00000148602	10	0	0.00	14	7	33.33	-	-	-
MIA3	0	genome.wustl.edu	37	1	222803199	222803199	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	222803199	222803199	C	T	SNP	MIA3	ENST00000354906	human	ensembl	69_37n	+1	known	missense	c.1384	p.P462S	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	MIA3	HGNC	ENSG00000154305	45	0	0.00	190	35	15.56	-	-	-
MYH14	0	genome.wustl.edu	37	19	50753926	50753926	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	19	50753926	50753926	T	C	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	+1	known	missense	c.1811	p.V604A	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	13	0	0.00	24	10	29.41	-	-	-
NCKAP1L	0	genome.wustl.edu	37	12	54925050	54925050	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	12	54925050	54925050	G	A	SNP	NCKAP1L	ENST00000293373	human	ensembl	69_37n	+1	known	missense	c.2513	p.R838Q	1.000	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338	163	0	0.00	219	29	11.69	-	-	-
PCDH1	0	genome.wustl.edu	37	5	141242814	141242815	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	5	141242814	141242815	-	G	INS	PCDH1	ENST00000287008	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3082_3081	p.K1027fs	1.000:1.000	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	18	0	0.00	24	3	11.11	-	-	-
PIK3C2B	0	genome.wustl.edu	37	1	204394861	204394861	+	Silent	SNP	G	G	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	204394861	204394861	G	A	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	silent	c.4596	p.L1532	0.998	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	78	0	0.00	175	43	19.72	-	-	-
PTCH1	0	genome.wustl.edu	37	9	98218641	98218641	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	9	98218641	98218641	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.3223	p.G1075R	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	21	0	0.00	21	12	36.36	-	-	-
RIMS2	0	genome.wustl.edu	37	8	104933950	104933950	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	8	104933950	104933950	A	G	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	+1	known	missense	c.2134	p.T712A	1.000	NULL	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	100	0	0.00	321	66	17.05	-	-	-
ROR2	0	genome.wustl.edu	37	9	94493291	94493292	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	9	94493291	94493292	-	C	INS	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1084_1083	p.H361fs	1.000:0.825	pirsf_Tyr_kinase_rcpt_ROR,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	26	0	0.00	26	3	10.34	-	-	-
SH2B3	0	genome.wustl.edu	37	12	111885304	111885304	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	12	111885304	111885304	C	T	SNP	SH2B3	ENST00000538307	human	ensembl	69_37n	+1	known	missense	c.586	p.R196C	0.984	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2B3	HGNC	ENSG00000111252	53	0	0.00	51	25	32.89	-	-	-
SMCHD1	0	genome.wustl.edu	37	18	2722567	2722567	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	18	2722567	2722567	G	T	SNP	SMCHD1	ENST00000320876	human	ensembl	69_37n	+1	known	missense	c.2509	p.V837F	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_ATPase-like_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596	125	0	0.00	179	30	14.29	-	-	-
SNORD115-29	0	genome.wustl.edu	37	15	25468428	25468428	+	RNA	SNP	G	G	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	15	25468428	25468428	G	A	SNP	SNORD115-29	ENST00000362834	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.428	-	-	-	no_errors	SNORD115-29	HGNC	ENSG00000199704	48	0	0.00	78	17	17.89	-	-	-
STAU2	0	genome.wustl.edu	37	8	74585370	74585370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	8	74585370	74585370	A	-	DEL	STAU2	ENST00000524300	human	ensembl	69_37n	-1	known	frame_shift_del	c.382	p.Y128fs	1.000	smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU2	HGNC	ENSG00000040341	143	0	0.00	446	134	22.87	-	-	-
TMEM132D	0	genome.wustl.edu	37	12	130184704	130184705	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	12	130184704	130184705	-	G	INS	TMEM132D	ENST00000422113	human	ensembl	69_37n	-1	known	frame_shift_ins	c.619_618	p.T206fs	0.073:0.027	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	17	0	0.00	16	2	11.11	-	-	-
TRPM8	0	genome.wustl.edu	37	2	234878392	234878392	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	2	234878392	234878392	G	A	SNP	TRPM8	ENST00000324695	human	ensembl	69_37n	+1	known	nonsense	c.2079	p.W693*	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	42	0	0.00	55	36	39.56	-	-	-
TTLL5	0	genome.wustl.edu	37	14	76232419	76232419	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	76232419	76232419	G	A	SNP	TTLL5	ENST00000298832	human	ensembl	69_37n	+1	known	missense	c.1723	p.A575T	1.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL5	HGNC	ENSG00000119685	90	0	0.00	91	85	48.30	-	-	-
UNC79	0	genome.wustl.edu	37	14	94088208	94088208	+	Silent	SNP	C	C	T			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	14	94088208	94088208	C	T	SNP	UNC79	ENST00000553484	human	ensembl	69_37n	+1	known	silent	c.4695	p.N1565	0.001	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958	245	0	0.00	318	72	18.46	-	-	-
ZNF644	0	genome.wustl.edu	37	1	91405737	91405737	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0DS-01A-11W-A071-09	TCGA-BH-A0DS-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6cfb5de9-ef59-4bc0-9ec2-f9bd5a9f2aee	fb5e6f04-b651-434e-901a-11d84eb99da7	1	91405737	91405737	C	A	SNP	ZNF644	ENST00000337393	human	ensembl	69_37n	-1	known	nonsense	c.1174	p.E392*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482	136	0	0.00	147	83	36.09	-	-	-
