Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CBFB	0	genome.wustl.edu	37	16	67100613	67100613	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	16	67100613	67100613	A	G	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	+1	known	missense	c.311	p.N104S	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	692	0	0.00	206	95	31.56	-	-	-
CD93	0	genome.wustl.edu	37	20	23066476	23066476	+	Silent	SNP	G	G	A			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	20	23066476	23066476	G	A	SNP	CD93	ENST00000246006	human	ensembl	69_37n	-1	known	silent	c.354	p.G118	0.557	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pirsf_CD93/CD141,pfscan_C-type_lectin	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	53	0	0.00	27	4	12.90	-	-	-
CLEC4A	0	genome.wustl.edu	37	12	8290866	8290866	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	12	8290866	8290866	A	T	SNP	CLEC4A	ENST00000229332	human	ensembl	69_37n	+1	known	missense	c.697	p.M233L	0.169	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4A	HGNC	ENSG00000111729	463	0	0.00	186	77	29.28	-	-	-
CLEC4C	0	genome.wustl.edu	37	12	7890152	7890152	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	12	7890152	7890152	G	T	SNP	CLEC4C	ENST00000360345	human	ensembl	69_37n	-1	known	missense	c.254	p.T85N	0.001	superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4C	HGNC	ENSG00000198178	108	0	0.00	54	16	22.86	-	-	-
COL14A1	0	genome.wustl.edu	37	8	121238949	121238949	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	8	121238949	121238949	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	+1	known	missense	c.1948	p.D650N	0.968	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	314	0	0.00	135	29	17.68	-	-	-
CXorf65	0	genome.wustl.edu	37	X	70324091	70324091	+	Silent	SNP	C	C	T			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	X	70324091	70324091	C	T	SNP	CXorf65	ENST00000438526	human	ensembl	69_37n	-1	known	silent	c.483	p.L161	0.001	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	CXorf65	HGNC	ENSG00000204165	130	0	0.00	48	34	41.46	-	-	-
EIF2AK1	0	genome.wustl.edu	37	7	6085747	6085747	+	Silent	SNP	T	T	A			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	7	6085747	6085747	T	A	SNP	EIF2AK1	ENST00000199389	human	ensembl	69_37n	-1	known	silent	c.585	p.I195	0.999	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EIF2AK1	HGNC	ENSG00000086232	312	0	0.00	154	58	27.36	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	246	0	0	107	23	17.56	-	-	-
PDZD2	0	genome.wustl.edu	37	5	31799548	31799548	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	5	31799548	31799548	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	+1	known	missense	c.193	p.E65K	0.856	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	200	0	0.00	100	25	20.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	224	0	0.00	87	36	29.27	-	-	-
PRKDC	0	genome.wustl.edu	37	8	48839867	48839867	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	8	48839867	48839867	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.2306	p.G769D	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	290	0	0.00	138	35	20.23	-	-	-
PTPN4	0	genome.wustl.edu	37	2	120725478	120725478	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	2	120725478	120725478	A	G	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	+1	known	missense	c.2624	p.N875S	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	354	0	0.00	118	23	16.31	-	-	-
PTPRU	0	genome.wustl.edu	37	1	29630376	29630376	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	1	29630376	29630376	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	+1	known	missense	c.2516	p.R839H	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	87	0	0.00	45	19	29.69	-	-	-
RABEP2	0	genome.wustl.edu	37	16	28935782	28935782	+	Silent	SNP	C	C	T			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	16	28935782	28935782	C	T	SNP	RABEP2	ENST00000358201	human	ensembl	69_37n	-1	known	silent	c.216	p.V72	1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548	63	0	0.00	27	8	22.86	-	-	-
RTTN	0	genome.wustl.edu	37	18	67727270	67727270	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	18	67727270	67727270	C	A	SNP	RTTN	ENST00000255674	human	ensembl	69_37n	-1	known	nonsense	c.4756	p.E1586*	0.286	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	475	0	0.00	180	62	25.62	-	-	-
SDK2	0	genome.wustl.edu	37	17	71394498	71394498	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	17	71394498	71394498	G	A	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.3164	p.S1055F	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	181	0	0.00	58	29	33.33	-	-	-
TC2N	0	genome.wustl.edu	37	14	92278710	92278710	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	14	92278710	92278710	A	G	SNP	TC2N	ENST00000340892	human	ensembl	69_37n	-1	known	missense	c.247	p.S83P	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	TC2N	HGNC	ENSG00000165929	451	0	0.00	178	44	19.82	-	-	-
TSHZ3	0	genome.wustl.edu	37	19	31767562	31767562	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	19	31767562	31767562	C	T	SNP	TSHZ3	ENST00000240587	human	ensembl	69_37n	-1	known	missense	c.3137	p.C1046Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	526	0	0.00	273	69	20.18	-	-	-
TXNDC15	0	genome.wustl.edu	37	5	134210139	134210139	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	5	134210139	134210139	C	T	SNP	TXNDC15	ENST00000358387	human	ensembl	69_37n	+1	known	nonsense	c.22	p.R8*	0.001	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC15	HGNC	ENSG00000113621	104	0	0.00	64	14	17.95	-	-	-
XPO5	0	genome.wustl.edu	37	6	43538686	43538686	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	6	43538686	43538686	G	C	SNP	XPO5	ENST00000265351	human	ensembl	69_37n	-1	known	missense	c.346	p.L116V	0.508	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPO5	HGNC	ENSG00000124571	315	0	0.00	126	23	15.44	-	-	-
ZNF425	0	genome.wustl.edu	37	7	148801590	148801590	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	561b8777-801a-49ed-a306-e7dafeb044b6	cfbd5476-e83a-401d-9f9a-639c73a0e35b	7	148801590	148801590	C	T	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.1373	p.R458H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	29	0	0.00	14	12	46.15	-	-	-
