Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABAT	0	genome.wustl.edu	37	16	8829606	8829606	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	16	8829606	8829606	A	G	SNP	ABAT	ENST00000268251	human	ensembl	69_37n	+1	known	missense	c.10	p.M4V	0.968	NULL	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	16	0	0.00	2	7	77.78	-	-	-
ABCA13	0	genome.wustl.edu	37	7	48284232	48284232	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	7	48284232	48284232	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	+1	known	missense	c.1322	p.L441P	0.025	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	109	0	0.00	86	36	29.51	-	-	-
AGL	0	genome.wustl.edu	37	1	100376361	100376361	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	100376361	100376361	A	-	DEL	AGL	ENST00000294724	human	ensembl	69_37n	+1	known	frame_shift_del	c.3794	p.S1266fs	1.000	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,tigrfam_Glycogen_debranch_met	pfam_GDE_C,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688	79	0	0.00	117	99	44.80	-	-	-
AGMAT	0	genome.wustl.edu	37	1	15905362	15905362	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	15905362	15905362	G	A	SNP	AGMAT	ENST00000375826	human	ensembl	69_37n	-1	known	missense	c.712	p.R238W	0.767	pfam_Ureohydrolase,tigrfam_Agmatinase-rel	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Agmatinase-rel	-	no_errors	AGMAT	HGNC	ENSG00000116771	58	0	0.00	12	8	40.00	-	-	-
ALG11	0	genome.wustl.edu	37	13	52586563	52586563	+	Silent	SNP	C	C	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	13	52586563	52586563	C	T	SNP	ALG11	ENST00000521508	human	ensembl	69_37n	+1	known	silent	c.9	p.A3	0.000	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710	22	0	0.00	16	11	40.74	-	-	-
ARHGAP35	0	genome.wustl.edu	37	19	47424158	47424158	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	47424158	47424158	C	G	SNP	ARHGAP35	ENST00000404338	human	ensembl	69_37n	+1	known	nonsense	c.2226	p.Y742*	0.932	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	64	0	0.00	51	27	34.62	-	-	-
CARM1	0	genome.wustl.edu	37	19	11024609	11024609	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	11024609	11024609	G	-	DEL	CARM1	ENST00000327064	human	ensembl	69_37n	+1	known	frame_shift_del	c.726	p.E243fs	1.000	pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	pfam_Histone-Arg_MeTrfase_N,pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_tRNA_mo5U34_MeTrfase,pfam_Methyltransf_11	-	no_errors	CARM1	HGNC	ENSG00000142453	26	0	0.00	5	2	28.57	-	-	-
CHRNA7	0	genome.wustl.edu	37	15	32460485	32460485	+	Silent	SNP	C	C	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	15	32460485	32460485	C	T	SNP	CHRNA7	ENST00000454250	human	ensembl	69_37n	+1	known	silent	c.1422	p.N474	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344	8	0	0.00	3	3	50.00	-	-	-
COLEC12	0	genome.wustl.edu	37	18	334817	334818	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	18	334817	334818	-	G	INS	COLEC12	ENST00000400256	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1741_1740	p.G580fs	0.997:0.111	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270	28	0	0.00	9	2	18.18	-	-	-
DNMT1	0	genome.wustl.edu	37	19	10249146	10249146	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	10249146	10249146	C	G	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	missense	c.4084	p.D1362H	1.000	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	63	0	0.00	25	4	13.79	-	-	-
DPY19L3	0	genome.wustl.edu	37	19	32949349	32949349	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	32949349	32949349	A	G	SNP	DPY19L3	ENST00000342179	human	ensembl	69_37n	+1	known	missense	c.1256	p.Y419C	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L3	HGNC	ENSG00000178904	134	0	0.00	119	22	15.60	-	-	-
EIF2C1	0	genome.wustl.edu	37	1	36358236	36358236	+	Silent	SNP	G	G	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	36358236	36358236	G	A	SNP	EIF2C1	ENST00000373204	human	ensembl	69_37n	+1	known	silent	c.288	p.K96	1.000	superfamily_PAZ	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C1	HGNC	ENSG00000092847	155	0	0.00	101	107	51.44	-	-	-
FBXO41	0	genome.wustl.edu	37	2	73491166	73491166	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	2	73491166	73491166	C	-	DEL	FBXO41	ENST00000295133	human	ensembl	69_37n	-1	known	frame_shift_del	c.2005	p.A669fs	1.000	superfamily_F-box_dom_cyclin-like	superfamily_F-box_dom_cyclin-like	-	no_errors	FBXO41	HGNC	ENSG00000163013	29	0	0.00	4	2	33.33	-	-	-
FREM1	0	genome.wustl.edu	37	9	14868864	14868864	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	9	14868864	14868864	G	-	DEL	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	frame_shift_del	c.112	p.H38fs	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	26	0	0.00	18	2	10.00	-	-	-
GPT2	0	genome.wustl.edu	37	16	46960909	46960909	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	16	46960909	46960909	G	A	SNP	GPT2	ENST00000340124	human	ensembl	69_37n	+1	known	missense	c.1441	p.G481S	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	GPT2	HGNC	ENSG00000166123	70	0	0.00	43	23	34.85	-	-	-
HPS6	0	genome.wustl.edu	37	10	103826282	103826282	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	10	103826282	103826282	G	T	SNP	HPS6	ENST00000299238	human	ensembl	69_37n	+1	known	missense	c.1051	p.D351Y	1.000	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189	99	0	0.00	21	5	19.23	-	-	-
IL23R	0	genome.wustl.edu	37	1	67648572	67648572	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	67648572	67648572	A	C	SNP	IL23R	ENST00000347310	human	ensembl	69_37n	+1	known	missense	c.421	p.N141H	0.985	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594	280	0	0.00	307	102	24.94	-	-	-
ITGA2B	0	genome.wustl.edu	37	17	42463072	42463073	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	17	42463072	42463073	-	G	INS	ITGA2B	ENST00000262407	human	ensembl	69_37n	-1	known	frame_shift_ins	c.421_420	p.W140fs	0.998:0.998	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961	19	0	0.00	8	2	20.00	-	-	-
KCNA1	0	genome.wustl.edu	37	12	5021358	5021358	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	12	5021358	5021358	G	A	SNP	KCNA1	ENST00000382545	human	ensembl	69_37n	+1	known	missense	c.814	p.E272K	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	119	0	0.00	65	30	31.25	-	-	-
KIAA0930	0	genome.wustl.edu	37	22	45601729	45601732	+	Frame_Shift_Del	DEL	CCCA	CCCA	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	CCCA	CCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	22	45601729	45601732	CCCA	-	DEL	KIAA0930	ENST00000251993	human	ensembl	69_37n	-1	known	frame_shift_del	c.296_293	p.L98fs	1.000:1.000:0.988:1.000	pfam_DUF2045	pfam_DUF2045	-	no_errors	KIAA0930	HGNC	ENSG00000100364	55	0	0.00	17	9	34.62	-	-	-
KIAA0930	0	genome.wustl.edu	37	22	45601738	45601738	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	22	45601738	45601738	G	-	DEL	KIAA0930	ENST00000251993	human	ensembl	69_37n	-1	known	frame_shift_del	c.287	p.P96fs	1.000	pfam_DUF2045	pfam_DUF2045	-	no_errors	KIAA0930	HGNC	ENSG00000100364	57	0	0.00	17	9	34.62	-	-	-
LPHN1	0	genome.wustl.edu	37	19	14262349	14262349	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	14262349	14262349	A	-	DEL	LPHN1	ENST00000340736	human	ensembl	69_37n	-1	known	frame_shift_del	c.3761	p.L1254fs	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071	53	0	0.00	17	2	10.53	-	-	-
LRRC8D	0	genome.wustl.edu	37	1	90400639	90400639	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	1	90400639	90400639	G	A	SNP	LRRC8D	ENST00000337338	human	ensembl	69_37n	+1	known	missense	c.2012	p.R671H	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8D	HGNC	ENSG00000171492	117	0	0.00	162	48	22.86	-	-	-
MAGEC2	0	genome.wustl.edu	37	X	141291740	141291740	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	X	141291740	141291740	C	T	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	missense	c.34	p.V12I	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	439	0	0.00	451	69	13.27	-	-	-
MAML3	0	genome.wustl.edu	37	4	140811230	140811230	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	4	140811230	140811230	G	A	SNP	MAML3	ENST00000509479	human	ensembl	69_37n	-1	known	missense	c.1360	p.P454S	0.982	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML3	HGNC	ENSG00000196782	155	0	0.00	67	30	30.61	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	12028665	12028665	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	17	12028665	12028665	G	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	missense	c.901	p.V301F	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	135	0	0.00	92	113	55.12	-	-	-
MED15	0	genome.wustl.edu	37	22	20922834	20922835	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	22	20922834	20922835	-	C	INS	MED15	ENST00000263205	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1068_1069	p.V358fs	1.000:0.995	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917	11	0	0.00	4	2	33.33	-	-	-
NEB	0	genome.wustl.edu	37	2	152362016	152362017	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	2	152362016	152362017	CT	-	DEL	NEB	ENST00000397345	human	ensembl	69_37n	-1	known	frame_shift_del	c.23718_23717	p.K7906fs	1.000:1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom_bac,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,prints_Nebulin,pfscan_Nebulin_35r-motif,pfscan_SH3_domain	-	no_errors	NEB	HGNC	ENSG00000183091	223	0	0.00	221	42	15.38	-	-	-
NKAPP1	0	genome.wustl.edu	37	X	119374159	119374159	+	RNA	SNP	C	C	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	X	119374159	119374159	C	A	SNP	NKAPP1	ENST00000452254	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.200	-	-	-	no_errors	NKAPP1	HGNC	ENSG00000233382	161	0	0.00	148	53	26.24	-	-	-
OR2A7	0	genome.wustl.edu	37	7	143956296	143956297	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	7	143956296	143956297	-	T	INS	OR2A7	ENST00000493325	human	ensembl	69_37n	-1	known	frame_shift_ins	c.426_425	p.L143fs	0.000:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A7	HGNC	ENSG00000243896	34	0	0.00	11	2	15.38	-	-	-
PCDHGA2	0	genome.wustl.edu	37	5	140720425	140720425	+	Silent	SNP	G	G	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	5	140720425	140720425	G	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	+1	known	silent	c.1887	p.A629	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	143	1	0.69	74	33	30.84	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	157	0	0.00	176	351	66.60	-	-	-
PLXNA1	0	genome.wustl.edu	37	3	126735390	126735391	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	3	126735390	126735391	-	C	INS	PLXNA1	ENST00000393409	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3045_3046	p.G1017fs	0.554:0.981	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA1	HGNC	ENSG00000114554	32	0	0.00	12	3	20.00	-	-	-
POTEE	0	genome.wustl.edu	37	2	131976219	131976219	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	2	131976219	131976219	G	A	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	+1	known	missense	c.244	p.A82T	0.002	NULL	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	82	0	0.00	41	29	41.43	-	-	-
PPFIA2	0	genome.wustl.edu	37	12	81671196	81671196	+	Silent	SNP	T	T	C			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	12	81671196	81671196	T	C	SNP	PPFIA2	ENST00000333447	human	ensembl	69_37n	-1	known	silent	c.3174	p.K1058	0.185	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_tRNA-bd_arm,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	8	0	0.00	10	11	52.38	-	-	-
RELL1	0	genome.wustl.edu	37	4	37640083	37640083	+	Silent	SNP	C	C	A			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	4	37640083	37640083	C	A	SNP	RELL1	ENST00000314117	human	ensembl	69_37n	-1	known	silent	c.429	p.L143	0.013	NULL	pfam_TNF_rcpt_RELT	-	no_errors	RELL1	HGNC	ENSG00000181826	138	0	0.00	95	70	42.42	-	-	-
SLC1A3	0	genome.wustl.edu	37	5	36679791	36679791	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	5	36679791	36679791	G	T	SNP	SLC1A3	ENST00000265113	human	ensembl	69_37n	+1	known	missense	c.923	p.G308V	0.989	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215	252	0	0.00	209	44	17.39	-	-	-
SLC27A5	0	genome.wustl.edu	37	19	59022779	59022780	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	19	59022779	59022780	-	C	INS	SLC27A5	ENST00000263093	human	ensembl	69_37n	-1	known	frame_shift_ins	c.544_543	p.S181fs	0.000:0.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807	28	0	0.00	7	2	22.22	-	-	-
STRADA	0	genome.wustl.edu	37	17	61781404	61781404	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	17	61781404	61781404	G	-	DEL	STRADA	ENST00000336174	human	ensembl	69_37n	-1	known	frame_shift_del	c.1104	p.S369fs	0.606	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	STRADA	HGNC	ENSG00000266173	24	0	0.00	16	2	11.11	-	-	-
THOC1	0	genome.wustl.edu	37	18	225118	225119	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	18	225118	225119	-	G	INS	THOC1	ENST00000261600	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1108_1107	p.D369fs	1.000:0.059	pfam_THO_THOC1	pfam_THO_THOC1,pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	-	no_errors	THOC1	HGNC	ENSG00000079134	27	0	0.00	20	3	13.04	-	-	-
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	155	0	0.00	53	56	51.38	-	-	-
TRPC4AP	0	genome.wustl.edu	37	20	33598008	33598010	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	20	33598008	33598010	GCT	-	DEL	TRPC4AP	ENST00000252015	human	ensembl	69_37n	-1	known	in_frame_del	c.1493_1491	p.EA497in_frame_delD	1.000:1.000:0.697	pfam_DUF3689	pfam_DUF3689	-	no_errors	TRPC4AP	HGNC	ENSG00000100991	60	0	0.00	46	11	19.30	-	-	-
TTN	0	genome.wustl.edu	37	2	179639817	179639817	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	2	179639817	179639817	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.6621	p.W2207C	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	157	0	0.00	184	28	13.21	-	-	-
USP38	0	genome.wustl.edu	37	4	144116875	144116875	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	4	144116875	144116875	T	G	SNP	USP38	ENST00000307017	human	ensembl	69_37n	+1	known	missense	c.825	p.I275M	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP38	HGNC	ENSG00000170185	126	0	0.00	134	52	27.96	-	-	-
VWA7	0	genome.wustl.edu	37	6	31740805	31740805	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	6	31740805	31740805	C	T	SNP	VWA7	ENST00000375686	human	ensembl	69_37n	-1	known	missense	c.1013	p.R338H	0.741	NULL	NULL	-	no_errors	VWA7	HGNC	ENSG00000204396	35	0	0.00	14	6	30.00	-	-	-
ZIC2	0	genome.wustl.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	13	100635008	100635010	CCA	-	DEL	ZIC2	ENST00000376335	human	ensembl	69_37n	+1	known	in_frame_del	c.690_692	p.H234in_frame_del	0.990:0.999:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC2	HGNC	ENSG00000043355	30	0	0.00	4	2	33.33	-	-	-
ZNF646	0	genome.wustl.edu	37	16	31090899	31090899	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0GY-01A-11W-A071-09	TCGA-BH-A0GY-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	db589949-1630-45b2-b09b-0312d3efd60b	066a335d-a487-40d1-963c-71a15f5ed769	16	31090899	31090899	C	T	SNP	ZNF646	ENST00000300850	human	ensembl	69_37n	+1	known	missense	c.3254	p.S1085F	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	182	0	0.00	50	14	21.88	-	-	-
