Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ATP1B1	0	genome.wustl.edu	37	1	169094123	169094124	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	1	169094123	169094124	-	T	INS	ATP1B1	ENST00000367815	human	ensembl	69_37n	+1	known	frame_shift_ins	c.228_229	p.L76fs	0.995:0.992	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	pfam_ATPase_P-typ_cation-exchng_bsu,tigrfam_ATPase_P-typ_cation-exchng_bsu	-	no_errors	ATP1B1	HGNC	ENSG00000143153	268	0	0.00	308	52	14.44	-	-	-
BRPF3	0	genome.wustl.edu	37	6	36181879	36181879	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	6	36181879	36181879	A	G	SNP	BRPF3	ENST00000357641	human	ensembl	69_37n	+1	known	missense	c.2705	p.N902S	0.986	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF3	HGNC	ENSG00000096070	85	0	0.00	59	24	28.92	-	-	-
BZRAP1	0	genome.wustl.edu	37	17	56386383	56386384	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	17	56386383	56386384	-	TT	INS	BZRAP1	ENST00000355701	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4250_4249	p.S1417fs	0.000:0.001	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379	19	0	0.00	10	3	23.08	-	-	-
DDX17	0	genome.wustl.edu	37	22	38890089	38890089	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	22	38890089	38890089	G	T	SNP	DDX17	ENST00000396821	human	ensembl	69_37n	-1	known	missense	c.1262	p.T421K	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201	361	1	0.28	198	49	19.84	-	-	-
DNAAF1	0	genome.wustl.edu	37	16	84203706	84203706	+	Silent	SNP	G	G	A			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	16	84203706	84203706	G	A	SNP	DNAAF1	ENST00000378553	human	ensembl	69_37n	+1	known	silent	c.1272	p.S424	0.000	NULL	NULL	-	no_errors	DNAAF1	HGNC	ENSG00000154099	103	0	0.00	48	14	22.58	-	-	-
FZD3	0	genome.wustl.edu	37	8	28385071	28385071	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	8	28385071	28385071	A	G	SNP	FZD3	ENST00000240093	human	ensembl	69_37n	+1	known	missense	c.794	p.N265S	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,prints_Frizzled,pfscan_Frizzled_dom,pfscan_GPCR_2-like	-	no_errors	FZD3	HGNC	ENSG00000104290	173	0	0.00	149	43	22.40	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	131	0	0	104	32	23.53	-	-	-
NCOR1	0	genome.wustl.edu	37	17	16012217	16012217	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	17	16012217	16012217	T	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.2065	p.K689*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	273	0	0.00	129	142	52.40	-	-	-
NGEF	0	genome.wustl.edu	37	2	233759485	233759485	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	2	233759485	233759485	C	T	SNP	NGEF	ENST00000264051	human	ensembl	69_37n	-1	known	missense	c.970	p.V324M	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	NGEF	HGNC	ENSG00000066248	46	0	0.00	19	15	44.12	-	-	-
NUP160	0	genome.wustl.edu	37	11	47804690	47804690	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	11	47804690	47804690	C	T	SNP	NUP160	ENST00000378460	human	ensembl	69_37n	-1	known	missense	c.4051	p.V1351M	1.000	NULL	pfam_Nucleoporin_Nup160	-	no_errors	NUP160	HGNC	ENSG00000030066	516	0	0.00	348	101	22.49	-	-	-
PABPC4L	0	genome.wustl.edu	37	4	135121899	135121899	+	Silent	SNP	C	C	T			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	4	135121899	135121899	C	T	SNP	PABPC4L	ENST00000529122	human	ensembl	69_37n	-1	known	silent	c.450	p.L150	0.663	tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4L	HGNC	ENSG00000254535	148	0	0.00	130	59	31.22	-	-	-
PDE11A	0	genome.wustl.edu	37	2	178936669	178936669	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	2	178936669	178936669	G	A	SNP	PDE11A	ENST00000286063	human	ensembl	69_37n	-1	known	missense	c.496	p.P166S	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655	82	0	0.00	73	15	17.05	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	135	0	0.00	125	23	15.54	-	-	-
PPP1R13B	0	genome.wustl.edu	37	14	104206651	104206651	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	14	104206651	104206651	G	A	SNP	PPP1R13B	ENST00000202556	human	ensembl	69_37n	-1	known	missense	c.2102	p.A701V	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808	57	0	0.00	46	14	23.33	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36252994	36252995	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	21	36252994	36252995	-	CC	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.368_367	p.D123fs	0.999:1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	227	0	0.00	165	43	20.67	-	-	-
SP140L	0	genome.wustl.edu	37	2	231265764	231265764	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	2	231265764	231265764	C	T	SNP	SP140L	ENST00000415673	human	ensembl	69_37n	+1	known	missense	c.1408	p.P470S	0.092	superfamily_Bromodomain,smart_Bromodomain	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140L	HGNC	ENSG00000185404	41	0	0.00	35	11	23.91	-	-	-
TEX15	0	genome.wustl.edu	37	8	30705430	30705430	+	Silent	SNP	C	C	T			TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	12d7dc75-2e4f-42f6-a067-fe6d7118a0b6	e4874060-606c-419f-b684-64fe20e237e7	8	30705430	30705430	C	T	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	silent	c.1104	p.G368	0.005	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	490	0	0.00	254	104	29.05	-	-	-
