Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACVR2A	0	genome.wustl.edu	37	2	148657378	148657378	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	2	148657378	148657378	C	G	SNP	ACVR2A	ENST00000241416	human	ensembl	69_37n	+1	known	missense	c.439	p.L147V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt	-	no_errors	ACVR2A	HGNC	ENSG00000121989	645	0	0.00	447	182	28.93	-	-	-
APOA4	0	genome.wustl.edu	37	11	116692402	116692402	+	Silent	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	11	116692402	116692402	G	A	SNP	APOA4	ENST00000357780	human	ensembl	69_37n	-1	known	silent	c.372	p.I124	0.114	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244	55	0	0.00	13	14	51.85	-	-	-
ARHGAP24	0	genome.wustl.edu	37	4	86898785	86898785	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	86898785	86898785	C	T	SNP	ARHGAP24	ENST00000395184	human	ensembl	69_37n	+1	known	missense	c.869	p.T290M	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	127	0	0.00	97	42	30.22	-	-	-
CCNJL	0	genome.wustl.edu	37	5	159686723	159686723	+	Silent	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	5	159686723	159686723	C	T	SNP	CCNJL	ENST00000393977	human	ensembl	69_37n	-1	known	silent	c.480	p.T160	0.578	superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_C,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJL	HGNC	ENSG00000135083	72	0	0.00	77	27	25.47	-	-	-
CDH24	0	genome.wustl.edu	37	14	23523784	23523785	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	14	23523784	23523785	-	C	INS	CDH24	ENST00000267383	human	ensembl	69_37n	-1	known	frame_shift_ins	c.715_714	p.L238fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880	37	0	0.00	8	4	33.33	-	-	-
CDK12	0	genome.wustl.edu	37	17	37618384	37618385	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	17	37618384	37618385	TT	-	DEL	CDK12	ENST00000447079	human	ensembl	69_37n	+1	known	frame_shift_del	c.60_61	p.L21fs	0.997:0.974	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDK12	HGNC	ENSG00000167258	53	0	0.00	20	16	44.44	-	-	-
CDS1	0	genome.wustl.edu	37	4	85540676	85540676	+	Silent	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	85540676	85540676	C	T	SNP	CDS1	ENST00000295887	human	ensembl	69_37n	+1	known	silent	c.570	p.L190	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624	145	0	0.00	111	55	33.13	-	-	-
CHEK2	0	genome.wustl.edu	37	22	29092948	29092948	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	22	29092948	29092948	G	A	SNP	CHEK2	ENST00000382580	human	ensembl	69_37n	-1	known	missense	c.1165	p.R389C	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765	46	0	0.00	22	27	55.10	-	-	-
CLCNKB	0	genome.wustl.edu	37	1	16376146	16376146	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	16376146	16376146	G	A	SNP	CLCNKB	ENST00000375679	human	ensembl	69_37n	+1	known	missense	c.815	p.R272Q	0.024	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908	65	0	0.00	33	12	26.67	-	-	-
EFCAB5	0	genome.wustl.edu	37	17	28381157	28381157	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	17	28381157	28381157	C	T	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	+1	known	missense	c.2185	p.H729Y	0.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	62	0	0.00	63	15	19.23	-	-	-
FBXO18	0	genome.wustl.edu	37	10	5963220	5963220	+	Splice_Site	SNP	G	G	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	10	5963220	5963220	G	T	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	+1	known	splice_site	c.2254-1	e15-1	1.000	-	-	-	no_errors	FBXO18	HGNC	ENSG00000134452	105	0	0.00	48	30	38.46	-	-	-
FEM1B	0	genome.wustl.edu	37	15	68582349	68582349	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	15	68582349	68582349	A	T	SNP	FEM1B	ENST00000306917	human	ensembl	69_37n	+1	known	missense	c.653	p.H218L	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	FEM1B	HGNC	ENSG00000169018	181	0	0.00	113	46	28.75	-	-	-
IFNA14	0	genome.wustl.edu	37	9	21239924	21239924	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	9	21239924	21239924	G	A	SNP	IFNA14	ENST00000380222	human	ensembl	69_37n	-1	known	missense	c.11	p.P4L	0.000	pfam_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA14	HGNC	ENSG00000228083	182	0	0.00	116	56	32.56	-	-	-
L3MBTL1	0	genome.wustl.edu	37	20	42169439	42169439	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	20	42169439	42169439	G	A	SNP	L3MBTL1	ENST00000418998	human	ensembl	69_37n	+1	known	missense	c.2312	p.R771H	0.988	superfamily_SAM/pointed	pfam_Mbt,pfam_Znf_C2HC,superfamily_SAM/pointed,smart_Mbt,pfscan_Mbt	-	no_errors	L3MBTL1	HGNC	ENSG00000185513	61	0	0.00	54	14	20.59	-	-	-
LDB2	0	genome.wustl.edu	37	4	16504398	16504398	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	16504398	16504398	C	T	SNP	LDB2	ENST00000507464	human	ensembl	69_37n	-1	novel	missense	c.752	p.R251Q	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LDB2	HGNC	ENSG00000169744	240	0	0.00	200	44	17.96	-	-	-
LEPR	0	genome.wustl.edu	37	1	66083718	66083718	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	66083718	66083718	C	-	DEL	LEPR	ENST00000349533	human	ensembl	69_37n	+1	known	frame_shift_del	c.2284	p.S763fs	0.367	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LEPR	HGNC	ENSG00000116678	196	0	0.00	146	42	21.88	-	-	-
LRBA	0	genome.wustl.edu	37	4	151412073	151412073	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	151412073	151412073	T	A	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	nonsense	c.6478	p.R2160*	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	140	0	0.00	105	51	32.69	-	-	-
LRIG3	0	genome.wustl.edu	37	12	59271349	59271349	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	12	59271349	59271349	C	T	SNP	LRIG3	ENST00000320743	human	ensembl	69_37n	-1	known	missense	c.2369	p.C790Y	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG3	HGNC	ENSG00000139263	94	0	0.00	67	14	17.28	-	-	-
LRRC30	0	genome.wustl.edu	37	18	7231362	7231362	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	18	7231362	7231362	C	G	SNP	LRRC30	ENST00000383467	human	ensembl	69_37n	+1	known	missense	c.226	p.L76V	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC30	HGNC	ENSG00000206422	70	0	0.00	255	38	12.97	-	-	-
LRRK1	0	genome.wustl.edu	37	15	101593282	101593283	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	15	101593282	101593283	-	T	INS	LRRK1	ENST00000388948	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3845_3846	p.V1283fs	0.007:0.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237	16	0	0.00	9	13	59.09	-	-	-
METRNL	0	genome.wustl.edu	37	17	81052054	81052054	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	17	81052054	81052054	G	A	SNP	METRNL	ENST00000320095	human	ensembl	69_37n	+1	known	missense	c.670	p.A224T	0.436	NULL	NULL	-	no_errors	METRNL	HGNC	ENSG00000176845	14	0	0.00	7	5	41.67	-	-	-
MMP13	0	genome.wustl.edu	37	11	102826428	102826428	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	11	102826428	102826428	G	T	SNP	MMP13	ENST00000340273	human	ensembl	69_37n	-1	novel	missense	c.7	p.P3T	0.000	pirsf_Pept_M10A_matrix_strom	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,pirsf_Pept_M10A_matrix_strom,prints_Pept_M10A_matrixin	-	no_errors	MMP13	HGNC	ENSG00000137745	127	1	0.78	54	41	42.71	-	-	-
MYCL1	0	genome.wustl.edu	37	1	40363231	40363231	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	40363231	40363231	G	A	SNP	MYCL1	ENST00000372816	human	ensembl	69_37n	-1	known	missense	c.908	p.A303V	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd,prints_Tscrpt_reg_Myc	-	no_errors	MYCL1	HGNC	ENSG00000116990	112	0	0.00	50	22	30.56	-	-	-
NR3C2	0	genome.wustl.edu	37	4	149357669	149357669	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	4	149357669	149357669	G	A	SNP	NR3C2	ENST00000355292	human	ensembl	69_37n	-1	known	missense	c.344	p.A115V	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	296	0	0.00	207	80	27.87	-	-	-
NUPL1	0	genome.wustl.edu	37	13	25905699	25905699	+	Silent	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	13	25905699	25905699	C	T	SNP	NUPL1	ENST00000463407	human	ensembl	69_37n	+1	known	silent	c.1438	p.L480	1.000	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496	66	0	0.00	29	22	43.14	-	-	-
PDE4DIP	0	genome.wustl.edu	37	1	144879284	144879284	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	144879284	144879284	G	A	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.4166	p.S1389L	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	333	0	0.00	244	55	18.33	-	-	-
PRKCB	0	genome.wustl.edu	37	16	24192242	24192242	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	16	24192242	24192242	C	T	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	+1	known	missense	c.1526	p.A509V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	93	0	0.00	55	24	30.38	-	-	-
RCC1	0	genome.wustl.edu	37	1	28856409	28856410	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	1	28856409	28856410	-	C	INS	RCC1	ENST00000373831	human	ensembl	69_37n	+1	known	frame_shift_ins	c.31_32	p.A14fs	0.985:0.987	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC1	HGNC	ENSG00000180198	33	0	0.00	20	3	13.04	-	-	-
SPHKAP	0	genome.wustl.edu	37	2	228996728	228996728	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	2	228996728	228996728	C	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.106	p.G36S	0.129	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	120	0	0.00	79	23	22.55	-	-	-
ST6GAL2	0	genome.wustl.edu	37	2	107459975	107459975	+	Silent	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	2	107459975	107459975	G	A	SNP	ST6GAL2	ENST00000361686	human	ensembl	69_37n	-1	known	silent	c.459	p.P153	0.000	NULL	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057	67	0	0.00	22	22	48.89	-	-	-
TAF1L	0	genome.wustl.edu	37	9	32634836	32634836	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	9	32634836	32634836	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	missense	c.742	p.E248K	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	178	0	0.00	118	53	30.81	-	-	-
TRIM73	0	genome.wustl.edu	37	7	75028599	75028599	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	7	75028599	75028599	G	A	SNP	TRIM73	ENST00000323819	human	ensembl	69_37n	+1	known	missense	c.382	p.V128I	1.000	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM73	HGNC	ENSG00000178809	11	0	0.00	2	5	71.43	-	-	-
VEZF1	0	genome.wustl.edu	37	17	56060288	56060288	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	17	56060288	56060288	C	G	SNP	VEZF1	ENST00000581208	human	ensembl	69_37n	-1	known	missense	c.500	p.S167T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	VEZF1	HGNC	ENSG00000136451	84	0	0.00	26	40	60.61	-	-	-
ZNF705E	0	genome.wustl.edu	37	11	71530725	71530725	+	RNA	SNP	C	C	T			TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed5f1077-62c1-43d8-8a27-56521bbdd8a5	209f788f-fd3c-4b14-9e9e-c6d0be240654	11	71530725	71530725	C	T	SNP	ZNF705E	ENST00000525199	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.942	-	-	-	no_errors	ZNF705E	HGNC	ENSG00000214534	213	0	0.00	266	103	27.84	-	-	-
