Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCC6	0	genome.wustl.edu	37	16	16282792	16282792	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	16282792	16282792	C	T	SNP	ABCC6	ENST00000205557	human	ensembl	69_37n	-1	known	missense	c.1675	p.E559K	0.999	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC6	HGNC	ENSG00000091262	53	0	0.00	25	5	16.67	-	-	-
AR	0	genome.wustl.edu	37	X	66766554	66766554	+	Silent	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	66766554	66766554	C	T	SNP	AR	ENST00000374690	human	ensembl	69_37n	+1	known	silent	c.1566	p.S522	0.990	NULL	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	36	0	0.00	9	4	30.77	-	-	-
ARAP2	0	genome.wustl.edu	37	4	36115810	36115810	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	4	36115810	36115810	T	C	SNP	ARAP2	ENST00000303965	human	ensembl	69_37n	-1	known	missense	c.4138	p.I1380V	1.000	pfam_Ras-assoc,pfscan_Ras-assoc	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	106	0	0.00	57	14	19.72	-	-	-
ARHGAP21	0	genome.wustl.edu	37	10	24896748	24896748	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	10	24896748	24896748	G	T	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.2507	p.P836H	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	74	0	0.00	23	15	39.47	-	-	-
ARL15	0	genome.wustl.edu	37	5	53182436	53182436	+	Silent	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	5	53182436	53182436	C	T	SNP	ARL15	ENST00000504924	human	ensembl	69_37n	-1	known	silent	c.570	p.L190	0.996	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,pfam_Gtr1_RagA,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL15	HGNC	ENSG00000185305	112	0	0.00	43	14	24.56	-	-	-
ATP10A	0	genome.wustl.edu	37	15	25953373	25953373	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	15	25953373	25953373	C	G	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.2419	p.G807R	1.000	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	72	0	0.00	24	8	25.00	-	-	-
ATP2B2	0	genome.wustl.edu	37	3	10370571	10370571	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	10370571	10370571	G	A	SNP	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	missense	c.3659	p.T1220M	1.000	NULL	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	91	0	0.00	90	13	12.62	-	-	-
CDK5RAP1	0	genome.wustl.edu	37	20	31984736	31984736	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	20	31984736	31984736	C	A	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	missense	c.135	p.E45D	0.128	NULL	pfam_rSAM,pfam_Methylthiotransferase_N,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB_methiolase,tigrfam_Methylthiotransferase	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	38	0	0.00	17	9	34.62	-	-	-
CDX2	0	genome.wustl.edu	37	13	28537414	28537414	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	13	28537414	28537414	C	T	SNP	CDX2	ENST00000548877	human	ensembl	69_37n	-1	putative	missense	c.308	p.R103H	0.882	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CDX2	HGNC	ENSG00000165556	95	0	0.00	56	13	18.57	-	-	-
CEP128	0	genome.wustl.edu	37	14	81329162	81329162	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	14	81329162	81329162	T	C	SNP	CEP128	ENST00000281129	human	ensembl	69_37n	-1	known	missense	c.701	p.E234G	1.000	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629	104	0	0.00	57	9	13.64	-	-	-
CHIC2	0	genome.wustl.edu	37	4	54915207	54915207	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	4	54915207	54915207	T	-	DEL	CHIC2	ENST00000263921	human	ensembl	69_37n	-1	known	frame_shift_del	c.245	p.N82fs	1.000	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	CHIC2	HGNC	ENSG00000109220	46	0	0.00	27	8	22.86	-	-	-
COL9A1	0	genome.wustl.edu	37	6	71004156	71004156	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	6	71004156	71004156	G	C	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	missense	c.410	p.S137C	0.169	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	46	0	0.00	24	11	31.43	-	-	-
CTBP2	0	genome.wustl.edu	37	10	126683158	126683158	+	Silent	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	10	126683158	126683158	G	A	SNP	CTBP2	ENST00000309035	human	ensembl	69_37n	-1	known	silent	c.2280	p.S760	1.000	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	71	0	0.00	156	19	10.86	-	-	-
DPEP3	0	genome.wustl.edu	37	16	68009816	68009816	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	68009816	68009816	G	T	SNP	DPEP3	ENST00000268793	human	ensembl	69_37n	-1	known	missense	c.1394	p.P465H	0.030	NULL	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096	92	0	0.00	55	9	14.06	-	-	-
EIF3D	0	genome.wustl.edu	37	22	36907704	36907704	+	Silent	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	22	36907704	36907704	G	A	SNP	EIF3D	ENST00000216190	human	ensembl	69_37n	-1	known	silent	c.1479	p.C493	1.000	pfam_EIF-3_zeta,pirsf_EIF-3_zeta	pfam_EIF-3_zeta,pirsf_EIF-3_zeta	-	no_errors	EIF3D	HGNC	ENSG00000100353	78	0	0.00	63	10	13.70	-	-	-
ENSG00000262323	0	genome.wustl.edu	37	16	29706325	29706325	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	29706325	29706325	C	G	SNP	ENSG00000262323	ENST00000449759	human	ensembl	69_37n	+1	putative	missense	c.470	p.P157R	0.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	AC009133.19	Clone_based_vega_gene	ENSG00000262323	28	0	0.00	30	5	14.29	-	-	-
FAM123B	0	genome.wustl.edu	37	X	63410049	63410049	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	63410049	63410049	C	T	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.3118	p.A1040T	0.480	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	46	0	0.00	20	9	31.03	-	-	-
FASN	0	genome.wustl.edu	37	17	80047261	80047261	+	Splice_Site	SNP	C	C	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	17	80047261	80047261	C	A	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	splice_site	c.1966-1	e12-1	1.000	-	-	-	no_errors	FASN	HGNC	ENSG00000169710	26	0	0.00	16	4	20.00	-	-	-
FBXL8	0	genome.wustl.edu	37	16	67196943	67196943	+	Silent	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	67196943	67196943	G	A	SNP	FBXL8	ENST00000258200	human	ensembl	69_37n	+1	known	silent	c.345	p.P115	0.974	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL8	HGNC	ENSG00000135722	26	0	0.00	5	6	54.55	-	-	-
GAPVD1	0	genome.wustl.edu	37	9	128064405	128064405	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	9	128064405	128064405	T	C	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	+1	known	missense	c.329	p.I110T	1.000	superfamily_Rho_GTPase_activation_prot	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	59	0	0.00	77	11	12.50	-	-	-
GLA	0	genome.wustl.edu	37	X	100662776	100662776	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	100662776	100662776	G	A	SNP	GLA	ENST00000218516	human	ensembl	69_37n	-1	known	missense	c.116	p.T39M	0.956	superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	pfam_Glyco_hydro_GHD,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_errors	GLA	HGNC	ENSG00000102393	65	0	0.00	46	8	14.81	-	-	-
GLI2	0	genome.wustl.edu	37	2	121708927	121708927	+	Silent	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	121708927	121708927	C	T	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	+1	known	silent	c.363	p.Y121	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	34	0	0.00	14	14	50.00	-	-	-
GLI3	0	genome.wustl.edu	37	7	42005234	42005234	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	7	42005234	42005234	A	C	SNP	GLI3	ENST00000395925	human	ensembl	69_37n	-1	known	missense	c.3437	p.L1146R	0.975	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571	36	0	0.00	15	8	34.78	-	-	-
GPRASP1	0	genome.wustl.edu	37	X	101912271	101912271	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	101912271	101912271	T	G	SNP	GPRASP1	ENST00000361600	human	ensembl	69_37n	+1	known	missense	c.3430	p.C1144G	0.812	superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932	75	0	0.00	38	16	29.63	-	-	-
GRHL3	0	genome.wustl.edu	37	1	24668645	24668645	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	24668645	24668645	C	T	SNP	GRHL3	ENST00000350501	human	ensembl	69_37n	+1	known	missense	c.1088	p.S363L	1.000	pfam_CP2	pfam_CP2,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	GRHL3	HGNC	ENSG00000158055	66	0	0.00	19	12	38.71	-	-	-
HSPG2	0	genome.wustl.edu	37	1	22174305	22174305	+	Silent	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	22174305	22174305	G	A	SNP	HSPG2	ENST00000374695	human	ensembl	69_37n	-1	known	silent	c.7902	p.I2634	0.991	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_SEA,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA,pfscan_Ig-like	-	no_errors	HSPG2	HGNC	ENSG00000142798	36	0	0.00	15	9	37.50	-	-	-
IGSF1	0	genome.wustl.edu	37	X	130411977	130411977	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	130411977	130411977	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.2188	p.Q730K	1.000	smart_Ig_sub,smart_Ig_sub2	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	117	0	0.00	71	32	31.07	-	-	-
IQCG	0	genome.wustl.edu	37	3	197659062	197659062	+	Silent	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	197659062	197659062	G	A	SNP	IQCG	ENST00000265239	human	ensembl	69_37n	-1	known	silent	c.627	p.F209	0.999	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473	101	0	0.00	59	127	68.28	-	-	-
IRAK1	0	genome.wustl.edu	37	X	153282465	153282465	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	X	153282465	153282465	A	T	SNP	IRAK1	ENST00000369973	human	ensembl	69_37n	-1	known	missense	c.926	p.V309E	0.998	NULL	pfam_Death,superfamily_DEATH-like,superfamily_Kinase-like_dom	-	no_errors	IRAK1	HGNC	ENSG00000184216	97	0	0.00	65	12	15.58	-	-	-
KCNH1	0	genome.wustl.edu	37	1	210948691	210948691	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	210948691	210948691	C	A	SNP	KCNH1	ENST00000271751	human	ensembl	69_37n	-1	known	missense	c.2111	p.R704M	1.000	prints_K_chnl_volt-dep_EAG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_Ion_trans_2,pfam_PAS_fold,superfamily_cNMP-bd-like,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	90	0	0.00	60	20	25.00	-	-	-
KLHL36	0	genome.wustl.edu	37	16	84690716	84690716	+	Silent	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	84690716	84690716	G	A	SNP	KLHL36	ENST00000564996	human	ensembl	69_37n	+1	known	silent	c.303	p.V101	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL36	HGNC	ENSG00000135686	62	0	0.00	28	10	26.32	-	-	-
LDB1	0	genome.wustl.edu	37	10	103867910	103867910	+	Silent	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	10	103867910	103867910	G	A	SNP	LDB1	ENST00000425280	human	ensembl	69_37n	-1	known	silent	c.1176	p.S392	1.000	NULL	NULL	-	no_errors	LDB1	HGNC	ENSG00000198728	92	0	0.00	53	26	32.91	-	-	-
MLL2	0	genome.wustl.edu	37	12	49426774	49426774	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	12	49426774	49426774	T	A	SNP	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	missense	c.11714	p.Q3905L	0.688	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	45	0	0.00	46	7	13.21	-	-	-
MYH14	0	genome.wustl.edu	37	19	50753006	50753006	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	19	50753006	50753006	C	T	SNP	MYH14	ENST00000262269	human	ensembl	69_37n	+1	known	missense	c.1582	p.R528C	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	108	0	0.00	112	24	17.65	-	-	-
N4BP2	0	genome.wustl.edu	37	4	40144366	40144366	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	4	40144366	40144366	A	T	SNP	N4BP2	ENST00000261435	human	ensembl	69_37n	+1	known	missense	c.4859	p.D1620V	1.000	pfam_DUF1771	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	58	0	0.00	35	12	25.53	-	-	-
NADSYN1	0	genome.wustl.edu	37	11	71185527	71185527	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	11	71185527	71185527	C	T	SNP	NADSYN1	ENST00000525200	human	ensembl	69_37n	+1	known	missense	c.653	p.T218M	0.994	superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NADSYN1	HGNC	ENSG00000172890	88	0	0.00	78	12	13.33	-	-	-
NEFH	0	genome.wustl.edu	37	22	29885829	29885829	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	22	29885829	29885829	G	A	SNP	NEFH	ENST00000310624	human	ensembl	69_37n	+1	known	missense	c.2200	p.E734K	0.848	NULL	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	79	0	0.00	65	10	13.33	-	-	-
NRCAM	0	genome.wustl.edu	37	7	107820770	107820770	+	Silent	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	7	107820770	107820770	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	silent	c.2748	p.P916	0.002	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	59	0	0.00	54	11	16.92	-	-	-
NXPH4	0	genome.wustl.edu	37	12	57619524	57619524	+	Silent	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	12	57619524	57619524	C	T	SNP	NXPH4	ENST00000349394	human	ensembl	69_37n	+1	known	silent	c.921	p.F307	0.669	pirsf_Neurexophilin	pirsf_Neurexophilin	-	no_errors	NXPH4	HGNC	ENSG00000182379	14	0	0.00	12	4	25.00	-	-	-
OR11L1	0	genome.wustl.edu	37	1	248004332	248004332	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248004332	248004332	G	C	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.867	p.I289M	0.999	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	48	0	0.00	65	23	26.14	-	-	-
OR11L1	0	genome.wustl.edu	37	1	248004656	248004656	+	Silent	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248004656	248004656	G	A	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	silent	c.543	p.L181	0.792	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	36	0	0.00	30	7	18.92	-	-	-
OR11L1	0	genome.wustl.edu	37	1	248004829	248004829	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248004829	248004829	G	C	SNP	OR11L1	ENST00000355784	human	ensembl	69_37n	-1	known	missense	c.370	p.L124V	0.416	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11L1	HGNC	ENSG00000197591	21	0	0.00	21	9	30.00	-	-	-
OR2L5	0	genome.wustl.edu	37	1	248185954	248185954	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	1	248185954	248185954	G	T	SNP	OR2L5	ENST00000355281	human	ensembl	69_37n	+1	known	missense	c.705	p.K235N	0.967	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2L5	HGNC	ENSG00000197454	74	0	0.00	115	15	11.54	-	-	-
OXSM	0	genome.wustl.edu	37	3	25833460	25833460	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	25833460	25833460	C	A	SNP	OXSM	ENST00000280701	human	ensembl	69_37n	+1	known	missense	c.949	p.P317T	1.000	pfam_Ketoacyl_synth_C,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	pfam_Ketoacyl_synth_N,pfam_Ketoacyl_synth_C,pfam_Thiolase_N,superfamily_Thiolase-like,smart_PKS_Beta-ketoAc_synthase_dom,tigrfam_3-oxoacyl-ACP_synth-2	-	no_errors	OXSM	HGNC	ENSG00000151093	20	0	0.00	18	10	35.71	-	-	-
PALB2	0	genome.wustl.edu	37	16	23614905	23614905	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	16	23614905	23614905	G	A	SNP	PALB2	ENST00000261584	human	ensembl	69_37n	-1	known	nonsense	c.3436	p.Q1146*	0.980	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093	50	0	0.00	25	6	19.35	-	-	-
PHYHIP	0	genome.wustl.edu	37	8	22084434	22084434	+	Silent	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	8	22084434	22084434	C	T	SNP	PHYHIP	ENST00000454243	human	ensembl	69_37n	-1	known	silent	c.270	p.T90	0.764	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIP	HGNC	ENSG00000168490	47	0	0.00	33	4	10.81	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	64	0	0.00	41	50	54.95	-	-	-
PMEL	0	genome.wustl.edu	37	12	56351845	56351845	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	12	56351845	56351845	C	T	SNP	PMEL	ENST00000360714	human	ensembl	69_37n	-1	known	missense	c.493	p.G165S	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	PMEL	HGNC	ENSG00000185664	54	0	0.00	22	7	24.14	-	-	-
PNPT1	0	genome.wustl.edu	37	2	55870522	55870522	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	55870522	55870522	C	T	SNP	PNPT1	ENST00000415374	human	ensembl	69_37n	-1	known	missense	c.1945	p.V649I	0.541	pfam_KH_dom_type_1,smart_KH_dom,pirsf_PNPase,pfscan_KH_dom_type_1,tigrfam_PNPase	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,pfam_PNPase_PH_RNA-bd_bac/org-type,pfam_KH_dom_type_1,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2,superfamily_PNPase_PH_RNA-bd_bac/org-type,superfamily_NA-bd_OB-fold-like,smart_KH_dom,smart_RNA-binding_domain_S1,pirsf_PNPase,pfscan_KH_dom_type_1,pfscan_Rbsml_prot_S1_RNA-bd_dom,tigrfam_PNPase	-	no_errors	PNPT1	HGNC	ENSG00000138035	110	0	0.00	94	41	30.37	-	-	-
RBM26	0	genome.wustl.edu	37	13	79896574	79896574	+	Silent	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	13	79896574	79896574	G	A	SNP	RBM26	ENST00000327303	human	ensembl	69_37n	-1	known	silent	c.2844	p.F948	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_PWI,superfamily_PWI,smart_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM26	HGNC	ENSG00000139746	110	0	0.00	63	22	25.88	-	-	-
RNF213	0	genome.wustl.edu	37	17	78358925	78358925	+	Silent	SNP	A	A	G			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	17	78358925	78358925	A	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	+1	known	silent	c.14409	p.Q4803	0.002	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	60	0	0.00	34	15	30.61	-	-	-
SLC17A5	0	genome.wustl.edu	37	6	74346398	74346398	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	6	74346398	74346398	G	C	SNP	SLC17A5	ENST00000355773	human	ensembl	69_37n	-1	known	missense	c.646	p.L216V	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A5	HGNC	ENSG00000119899	34	0	0.00	13	4	23.53	-	-	-
SLC27A5	0	genome.wustl.edu	37	19	59021339	59021339	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	19	59021339	59021339	C	T	SNP	SLC27A5	ENST00000263093	human	ensembl	69_37n	-1	known	missense	c.932	p.R311Q	0.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A5	HGNC	ENSG00000083807	56	0	0.00	35	4	10.26	-	-	-
ST6GALNAC6	0	genome.wustl.edu	37	9	130656839	130656839	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	9	130656839	130656839	G	C	SNP	ST6GALNAC6	ENST00000542456	human	ensembl	69_37n	-1	known	nonsense	c.56	p.S19*	1.000	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC6	HGNC	ENSG00000160408	46	0	0.00	25	11	30.56	-	-	-
TFDP1	0	genome.wustl.edu	37	13	114292199	114292199	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	13	114292199	114292199	G	A	SNP	TFDP1	ENST00000375370	human	ensembl	69_37n	+1	known	missense	c.1073	p.R358K	1.000	pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP1	HGNC	ENSG00000198176	77	0	0.00	48	7	12.73	-	-	-
TP53	0	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	17	7577120	7577120	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.818	p.R273H	0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	61	0	0.00	22	20	47.62	-	-	-
TTN	0	genome.wustl.edu	37	2	179436920	179436920	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	179436920	179436920	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.66235	p.R22079*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	96	0	0.00	54	12	18.18	-	-	-
XPO1	0	genome.wustl.edu	37	2	61719472	61719472	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	2	61719472	61719472	C	T	SNP	XPO1	ENST00000401558	human	ensembl	69_37n	-1	known	missense	c.1711	p.E571K	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898	60	0	0.00	36	18	33.33	-	-	-
ZC3H12C	0	genome.wustl.edu	37	11	110030002	110030002	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BH-A203-01A-12D-A167-09	TCGA-BH-A203-11A-42D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	128b9209-2201-428c-87e7-65690bfe3875	b62e3943-6354-4309-881b-3f1f10ecb1fd	11	110030002	110030002	T	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	69_37n	+1	known	nonsense	c.935	p.L312*	0.700	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	41	0	0.00	30	5	14.29	-	-	-
