Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CAMTA1	0	genome.wustl.edu	37	1	7792621	7792621	+	Missense_Mutation	SNP	G	G	A			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	1	7792621	7792621	G	A	SNP	CAMTA1	ENST00000303635	human	ensembl	69_37n	+1	known	missense	c.3028	p.G1010S	0.998	NULL	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	98	0	0.00	94	17	15.32	-	-	-
CNTNAP4	0	genome.wustl.edu	37	16	76572213	76572213	+	Missense_Mutation	SNP	C	C	A			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	16	76572213	76572213	C	A	SNP	CNTNAP4	ENST00000307431	human	ensembl	69_37n	+1	known	missense	c.3193	p.L1065I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	182	0	0.00	97	17	14.91	-	-	-
CRX	0	genome.wustl.edu	37	19	48342988	48342988	+	Missense_Mutation	SNP	C	C	A			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	19	48342988	48342988	C	A	SNP	CRX	ENST00000221996	human	ensembl	69_37n	+1	known	missense	c.664	p.L222I	1.000	pfam_Otx_TF_C	pfam_Homeodomain,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	CRX	HGNC	ENSG00000105392	83	0	0.00	74	11	12.94	-	-	-
EXT1	0	genome.wustl.edu	37	8	118849379	118849379	+	Missense_Mutation	SNP	G	G	T			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	8	118849379	118849379	G	T	SNP	EXT1	ENST00000378204	human	ensembl	69_37n	-1	known	missense	c.1024	p.L342I	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197	69	0	0.00	77	13	14.44	-	-	-
ILF2	0	genome.wustl.edu	37	1	153635526	153635526	+	Missense_Mutation	SNP	C	C	G			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	1	153635526	153635526	C	G	SNP	ILF2	ENST00000361891	human	ensembl	69_37n	-1	known	missense	c.890	p.R297T	1.000	pfam_DZF,smart_DZF	pfam_DZF,smart_DZF,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	ILF2	HGNC	ENSG00000143621	145	0	0.00	166	35	17.41	-	-	-
LOXL1	0	genome.wustl.edu	37	15	74239446	74239446	+	Missense_Mutation	SNP	T	T	C			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	15	74239446	74239446	T	C	SNP	LOXL1	ENST00000261921	human	ensembl	69_37n	+1	known	missense	c.1388	p.L463P	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOXL1	HGNC	ENSG00000129038	98	0	0.00	102	13	11.21	-	-	-
MFN1	0	genome.wustl.edu	37	3	179107927	179107927	+	Splice_Site	SNP	G	G	T			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	3	179107927	179107927	G	T	SNP	MFN1	ENST00000263969	human	ensembl	69_37n	+1	known	splice_site	c.2147+1	e16+1	1.000	-	-	-	no_errors	MFN1	HGNC	ENSG00000171109	127	0	0.00	54	15	21.74	-	-	-
NOL12	0	genome.wustl.edu	37	22	38082463	38082463	+	Missense_Mutation	SNP	T	T	G			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	22	38082463	38082463	T	G	SNP	NOL12	ENST00000359114	human	ensembl	69_37n	+1	known	missense	c.64	p.F22V	1.000	pfam_Nucleolar_protein_12	pfam_Nucleolar_protein_12	-	no_errors	NOL12	HGNC	ENSG00000256872	35	0	0.00	46	6	11.54	-	-	-
NPR3	0	genome.wustl.edu	37	5	32786414	32786414	+	Missense_Mutation	SNP	G	G	C			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	5	32786414	32786414	G	C	SNP	NPR3	ENST00000265074	human	ensembl	69_37n	+1	known	missense	c.1589	p.R530P	1.000	NULL	pfam_ANF_lig-bd_rcpt,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389	206	0	0.00	108	31	22.14	-	-	-
NUDT1	0	genome.wustl.edu	37	7	2290629	2290629	+	Missense_Mutation	SNP	C	C	T			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	7	2290629	2290629	C	T	SNP	NUDT1	ENST00000343985	human	ensembl	69_37n	+1	known	missense	c.533	p.T178M	0.000	superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_OxG-triPHTase,prints_Nudix_hydrolase	-	no_errors	NUDT1	HGNC	ENSG00000106268	44	0	0.00	41	6	12.77	-	-	-
OPN4	0	genome.wustl.edu	37	10	88416983	88416983	+	Nonsense_Mutation	SNP	C	C	T			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	10	88416983	88416983	C	T	SNP	OPN4	ENST00000372071	human	ensembl	69_37n	+1	known	nonsense	c.322	p.Q108*	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN4	HGNC	ENSG00000122375	163	0	0.00	223	25	10.08	-	-	-
RPL3L	0	genome.wustl.edu	37	16	2002953	2002953	+	Missense_Mutation	SNP	G	G	A			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	16	2002953	2002953	G	A	SNP	RPL3L	ENST00000268661	human	ensembl	69_37n	-1	known	missense	c.287	p.P96L	0.530	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	RPL3L	HGNC	ENSG00000140986	49	0	0.00	40	9	18.37	-	-	-
SSTR4	0	genome.wustl.edu	37	20	23017092	23017092	+	Silent	SNP	G	G	T			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	20	23017092	23017092	G	T	SNP	SSTR4	ENST00000255008	human	ensembl	69_37n	+1	known	silent	c.972	p.R324	0.981	pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_Somatstn_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Somatstn_rcpt_4,prints_7TM_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671	100	0	0.00	116	14	10.77	-	-	-
SYT6	0	genome.wustl.edu	37	1	114640409	114640409	+	Silent	SNP	G	G	A			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	1	114640409	114640409	G	A	SNP	SYT6	ENST00000369545	human	ensembl	69_37n	-1	known	silent	c.1455	p.Y485	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207	129	1	0.77	169	27	13.71	-	-	-
ZFHX4	0	genome.wustl.edu	37	8	77618671	77618671	+	Missense_Mutation	SNP	G	G	A			TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	8	77618671	77618671	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	+1	known	missense	c.2348	p.R783Q	1.000	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	40	0	0.00	58	7	10.77	-	-	-
