Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ABCG8	64241	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	44073354	44073354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ACSBG2	81616	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	6182803	6182803	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ACTL9	284382	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8807932	8807932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
AIFM1	9131	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	129289191	129289191	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
APBB2	323	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	41015685	41015685	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ATP5B	506	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	57036241	57036241	+	Splice_Site	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ATP8B3	148229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	1811645	1811645	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76952169	76952169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
AVL9	23080	hgsc.bcm.edu;ucsc.edu	37	7	32584314	32584314	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
B3GAT3	26229	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	62384532	62384532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
BAZ1A	11177	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	35264070	35264070	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
BDKRB2	624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	96703508	96703508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
BRPF3	27154	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	36177669	36177669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
BZRAP1	9256	hgsc.bcm.edu	37	17	56386383	56386384	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
C20orf165	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	44515557	44515557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
C20orf24	55969	broad.mit.edu;ucsc.edu	37	20	35238021	35238021	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
C2CD3	26005	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	73753116	73753116	+	Silent	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
C4orf41	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	184618916	184618916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
CD101	9398	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	117568204	117568204	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
CDC23	8697	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	137542357	137542357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
CNTN2	6900	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	205035032	205035032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
DET1	55070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	89070834	89070834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
DPY19L1	23333	broad.mit.edu;ucsc.edu	37	7	35057549	35057549	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
FAM83C	128876	hgsc.bcm.edu;ucsc.edu	37	20	33875097	33875099	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
FMN2	56776	hgsc.bcm.edu	37	1	240371075	240371075	+	Missense_Mutation	SNP	C	C	T	rs71646825	bycluster;by1000genomes	TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
FNIP2	57600	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	159790324	159790324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
GAA	2548	broad.mit.edu;hgsc.bcm.edu	37	17	78090845	78090845	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
GABRB1	2560	hgsc.bcm.edu;ucsc.edu	37	4	47408773	47408774	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
GATA2	2624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	128200752	128200753	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
GPRIN3	285513	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	90170546	90170546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
HDAC6	10013	hgsc.bcm.edu;ucsc.edu	37	X	48674608	48674608	+	Silent	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
HHIP	64399	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	145635414	145635414	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
IARS	3376	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	95021264	95021264	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
IL23R	149233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	67705899	67705899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
INADL	10207	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	62237112	62237112	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
INMT-FAM188B	100526825	broad.mit.edu;hgsc.bcm.edu	37	7	30931623	30931623	+	RNA	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
INTS6	26512	broad.mit.edu;hgsc.bcm.edu	37	13	51969612	51969612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
KHK	3795	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	27317803	27317803	+	Splice_Site	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
KIAA0586	9786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	58932590	58932590	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
KLF11	8462	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	10186515	10186515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
LACRT	90070	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	55026040	55026040	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
LAMC2	3918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183177097	183177097	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
LAMC2	3918	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	183177098	183177098	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
MMP2	4313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	55519326	55519326	+	Silent	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
MORC3	23515	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	37736413	37736413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
MTOR	2475	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	11210198	11210198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
MUC16	94025	hgsc.bcm.edu;ucsc.edu	37	19	9075200	9075200	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
NBEAL1	65065	broad.mit.edu;ucsc.edu	37	2	204045216	204045217	+	Frame_Shift_Del	DEL	GT	-	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
NEBL	10529	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	21124510	21124510	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
NEDD9	4739	broad.mit.edu;ucsc.edu	37	6	11213548	11213548	+	Missense_Mutation	SNP	A	G	G	rs111447705		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
NR4A3	8013	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	102590586	102590586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ODZ4	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	78369131	78369131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
OPN4	94233	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	88418429	88418429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
OR7G3	390883	hgsc.bcm.edu	37	19	9236698	9236699	+	Frame_Shift_Ins	INS	-	-	ATGGT	rs111867493	bycluster;by1000genomes	TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PAPOLA	10914	broad.mit.edu;ucsc.edu	37	14	97022676	97022676	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PAX4	5078	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	127252031	127252031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PCDHGB1	56104	broad.mit.edu;ucsc.edu	37	5	140732064	140732064	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PCSK9	255738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55509579	55509579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PCSK9	255738	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	55509580	55509580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PHACTR4	65979	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	28800469	28800469	+	Silent	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PKD1L1	168507	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	47873983	47873983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PKN2	5586	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	89236095	89236095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PLA2G4D	283748	broad.mit.edu;ucsc.edu	37	15	42379578	42379578	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PLEC	5339	broad.mit.edu;hgsc.bcm.edu	37	8	144999885	144999885	+	Silent	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PPIE	10450	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	40209514	40209514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PPIP5K2	23262	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	102502993	102502993	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
PROCR	10544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	33763988	33763988	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
RABAC1	10567	broad.mit.edu;ucsc.edu	37	19	42462491	42462491	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
RASGRF2	5924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	80508333	80508333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
RBM7	10179	broad.mit.edu;hgsc.bcm.edu	37	11	114272549	114272549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
S100A7A	338324	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	153391770	153391770	+	Silent	SNP	T	T	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
SCARB2	950	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	77084506	77084506	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
SH3GLB1	51100	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	87200796	87200796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
SMARCAL1	50485	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	217342998	217342998	+	Silent	SNP	A	A	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
SPTBN4	57731	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	41066216	41066216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
TECTB	6975	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	114053509	114053509	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
VHL	7428	broad.mit.edu;hgsc.bcm.edu	37	3	10183797	10183797	+	Missense_Mutation	SNP	T	T	C	rs5030807	bycluster	TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
YIF1A	10897	hgsc.bcm.edu;ucsc.edu	37	11	66052992	66052996	+	Frame_Shift_Del	DEL	CACCT	CACCT	-	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	CACCT	CACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ZFR	51663	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	32390443	32390443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ZNF45	7596	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	44418082	44418082	+	Silent	SNP	G	G	A	rs142171881	bycluster;byfrequency;by1000genomes	TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ZPBP2	124626	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	38031594	38031594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
ZSCAN1	284312	broad.mit.edu;hgsc.bcm.edu	37	19	58549265	58549265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
FKBP9L	360132	broad.mit.edu	37	7	55755510	55755510	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
LMOD1	25802	broad.mit.edu	37	1	201869657	201869657	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
LOC284232	0	broad.mit.edu	37	13	19412668	19412668	+	RNA	SNP	C	T	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
NYX	60506	broad.mit.edu	37	X	41333572	41333572	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
SLC22A4	6583	broad.mit.edu	37	5	131630693	131630693	+	Silent	SNP	C	T	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
TSGA10IP	254187	broad.mit.edu	37	11	65715209	65715209	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
Unknown	0	broad.mit.edu	37	15	76074470	76074470	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-CJ-6027-01A-11D-1669-08	TCGA-CJ-6027-11A-01D-1669-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b0483455-4cde-408f-b831-17223c03241a	8a6d1d13-52dd-44de-9bba-95cbb12056a0	
