Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	871231	871231	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:871231T>A	uc001abw.1	+	5	465	c.385T>A	c.(385-387)TGT>AGT	p.C129S	SAMD11_uc001abv.1_Missense_Mutation_p.C129S|SAMD11_uc001abx.1_Missense_Mutation_p.C8S	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	129				C -> L (in Ref. 2; AAH24295).		nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		TCAGAGCCGCTGTGAATTCCA	0.672													24	70					0	0	0	0
ICMT	23463	broad.mit.edu	37	1	6291999	6291999	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:6291999G>C	uc001amk.2	-	4	708	c.635C>G	c.(634-636)TCT>TGT	p.S212C	ICMT_uc001aml.2_Missense_Mutation_p.S116C	NM_012405	NP_036537	O60725	ICMT_HUMAN	isoprenylcysteine carboxyl methyltransferase	212					protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane|membrane fraction	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity				0	Ovarian(185;0.0634)	all_cancers(23;5.85e-39)|all_epithelial(116;2.4e-22)|all_lung(118;2.65e-08)|Lung NSC(185;6.45e-07)|all_neural(13;3.18e-06)|all_hematologic(16;8.99e-06)|Acute lymphoblastic leukemia(12;0.000365)|Breast(487;0.000688)|Renal(390;0.0007)|Colorectal(325;0.00104)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)|Medulloblastoma(700;0.211)		Epithelial(90;5.52e-38)|GBM - Glioblastoma multiforme(13;6.51e-32)|OV - Ovarian serous cystadenocarcinoma(86;3.03e-19)|Colorectal(212;7.08e-08)|COAD - Colon adenocarcinoma(227;8.35e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(365;0.00109)|STAD - Stomach adenocarcinoma(132;0.00313)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.182)		CCCGACGTAAGAAGGATGCCG	0.348													3	51					0	0	0	0
TNFRSF9	3604	broad.mit.edu	37	1	7999954	7999954	+	Splice_Site	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:7999954C>T	uc001aot.2	-	2	228	c.100_splice	c.e2+1	p.G34_splice		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,						induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity			large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		TGGGTACTCACCAGCTGGGCA	0.453													21	48					0	0	0	0
PEX14	5195	broad.mit.edu	37	1	10659315	10659315	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:10659315G>A	uc001arn.2	+	4	211	c.190G>A	c.(190-192)GAT>AAT	p.D64N	PEX14_uc009vmu.1_Intron|PEX14_uc009vmv.2_5'UTR|PEX14_uc010oam.1_5'UTR|PEX14_uc010oan.1_Intron|PEX14_uc009vmw.2_5'UTR	NM_004565	NP_004556	O75381	PEX14_HUMAN	peroxisomal biogenesis factor 14	64					negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|protein homooligomerization|protein import into peroxisome matrix|transmembrane transport	integral to membrane|nucleus|peroxisomal membrane|protein complex	protein N-terminus binding|transcription corepressor activity			breast(1)	1	Ovarian(185;0.203)	all_lung(284;6.02e-06)|Lung NSC(185;9.62e-06)|Renal(390;0.000147)|Breast(348;0.000932)|Colorectal(325;0.00215)|Hepatocellular(190;0.00913)|Ovarian(437;0.023)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0292)|Colorectal(212;9.13e-08)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000482)|Kidney(185;0.00174)|KIRC - Kidney renal clear cell carcinoma(229;0.00457)|STAD - Stomach adenocarcinoma(132;0.0249)|READ - Rectum adenocarcinoma(331;0.0419)		TGAAGAGATTGATATGGCCTT	0.542													11	94					0	0	0	0
MTOR	2475	broad.mit.edu	37	1	11206848	11206848	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:11206848C>A	uc001asd.2	-	32	4692	c.4571G>T	c.(4570-4572)GGT>GTT	p.G1524V		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1524	FAT.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GTCCCACTGACCTATACACAC	0.488													18	40					1.33834e-09	2.95207e-09	1	0
UBIAD1	29914	broad.mit.edu	37	1	11334044	11334044	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:11334044G>C	uc001asg.2	+	1	790	c.456G>C	c.(454-456)CTG>CTC	p.L152L		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	152	Helical; (Potential).				menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		TCTACTACCTGTCCCCTCTGA	0.557													8	57					0	0	0	0
AADACL4	343066	broad.mit.edu	37	1	12726424	12726424	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:12726424C>T	uc001auf.2	+	4	902	c.902C>T	c.(901-903)CCC>CTC	p.P301L		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	301	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		GGCTACCAACCCTGGTCTCCC	0.493													28	92					0	0	0	0
NBPF1	55672	broad.mit.edu	37	1	16907918	16907918	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:16907918G>T	uc009vos.1	-	15	2264	c.1376C>A	c.(1375-1377)CCC>CAC	p.P459H	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.P188H	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	459	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GTGTTACCTGGGGGCAGATGA	0.433													9	481					0.000219431	0.000425315	1	0
CROCCL1	84809	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	A	A	rs28392876	by1000genomes	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:16946438G>A	uc010ocf.1	-	3		c.460C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCCTTCCGCCGGGCCAGCAGC	0.672													7	15					0	0	0	0
PAX7	5081	broad.mit.edu	37	1	19062184	19062184	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:19062184C>A	uc001bay.2	+	8	1812	c.1214C>A	c.(1213-1215)TCC>TAC	p.S405Y	PAX7_uc001baz.2_Missense_Mutation_p.S403Y|PAX7_uc010oct.1_Missense_Mutation_p.S405Y	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	405					anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		GCTGACTTCTCCATCTCCCCG	0.657			T	FOXO1A	alveolar rhabdomyosarcoma								21	65					3.51602e-12	8.11175e-12	1	0
ALPL	249	broad.mit.edu	37	1	21889671	21889671	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:21889671G>T	uc001bet.2	+	5	623	c.366G>T	c.(364-366)AAG>AAT	p.K122N	ALPL_uc010odn.1_Missense_Mutation_p.K70N|ALPL_uc010odo.1_Missense_Mutation_p.K67N|ALPL_uc010odp.1_Missense_Mutation_p.K45N|ALPL_uc001beu.3_Missense_Mutation_p.K122N	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	122					response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	GTGGGGTGAAGGCCAATGAGG	0.657													13	66					0.000151284	0.000294854	1	0
E2F2	1870	broad.mit.edu	37	1	23848419	23848419	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:23848419T>C	uc001bhe.1	-	3	916	c.488A>G	c.(487-489)GAC>GGC	p.D163G		NM_004091	NP_004082	Q14209	E2F2_HUMAN	E2F transcription factor 2	163	Leucine-zipper.|DEF box.|Potential.				G1 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|skin(2)	4		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.52e-24)|Colorectal(126;6.25e-08)|COAD - Colon adenocarcinoma(152;3.42e-06)|GBM - Glioblastoma multiforme(114;8.98e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00102)|KIRC - Kidney renal clear cell carcinoma(1967;0.00366)|STAD - Stomach adenocarcinoma(196;0.0132)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.0888)|LUSC - Lung squamous cell carcinoma(448;0.19)		CTTCTGCACGTCCAGCACCTC	0.567													4	71					0	0	0	0
HMGCL	3155	broad.mit.edu	37	1	24137224	24137224	+	Splice_Site	SNP	A	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:24137224A>C	uc001bib.2	-	6	605	c.561_splice	c.e6+1	p.E187_splice	HMGCL_uc010oec.1_Intron|HMGCL_uc009vqr.2_Intron|HMGCL_uc001bic.2_Splice_Site_p.E162_splice|HMGCL_uc009vqs.1_Intron|HMGCL_uc001bid.1_Missense_Mutation_p.V188G	NM_000191	NP_000182	P35914	HMGCL_HUMAN	3-hydroxy-3-methylglutaryl CoA lyase isoform 1						acetoacetic acid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA lyase activity|metal ion binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.0044)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.38e-24)|Colorectal(126;5.58e-08)|COAD - Colon adenocarcinoma(152;3.12e-06)|GBM - Glioblastoma multiforme(114;4.9e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000982)|KIRC - Kidney renal clear cell carcinoma(1967;0.0034)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0856)|LUSC - Lung squamous cell carcinoma(448;0.188)		ACATGCACACACCTCAGCTAC	0.582											OREG0013233	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	22					0	0	0	0
ZNF683	257101	broad.mit.edu	37	1	26691026	26691026	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:26691026G>C	uc001bmg.1	-	4	1129	c.1011C>G	c.(1009-1011)CTC>CTG	p.L337L	ZNF683_uc001bmh.1_Silent_p.L337L|ZNF683_uc009vsj.1_Silent_p.L337L	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	337	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		CAGATACCTTGAGATTGGAGA	0.537													34	131					0	0	0	0
AHDC1	27245	broad.mit.edu	37	1	27878118	27878118	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:27878118G>A	uc009vsy.2	-	6	1478	c.509C>T	c.(508-510)TCA>TTA	p.S170L	AHDC1_uc009vsz.1_Missense_Mutation_p.S170L|AHDC1_uc001boh.1_Missense_Mutation_p.S43L	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	170	Pro-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		CAAACTGGGTGAGGAGAAGAA	0.662													6	127					0	0	0	0
PTPRU	10076	broad.mit.edu	37	1	29652139	29652139	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:29652139C>T	uc001bru.2	+	31	4417	c.4307C>T	c.(4306-4308)GCC>GTC	p.A1436V	PTPRU_uc001brv.2_Missense_Mutation_p.A1432V|PTPRU_uc001brw.2_Missense_Mutation_p.A1426V|PTPRU_uc009vtq.2_Missense_Mutation_p.A1430V|PTPRU_uc009vtr.2_Missense_Mutation_p.A1423V|PTPRU_uc001brx.2_Missense_Mutation_p.A162V	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1436	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).			A -> V (in Ref. 5; AAB07074).	canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		TACGATGTGGCCCTGGAGTAC	0.622													13	72					0	0	0	0
PUM1	9698	broad.mit.edu	37	1	31414879	31414879	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:31414879T>A	uc001bsi.1	-	19	3193	c.3080A>T	c.(3079-3081)GAG>GTG	p.E1027V	PUM1_uc001bsf.1_Missense_Mutation_p.E695V|PUM1_uc001bsg.1_Missense_Mutation_p.E761V|PUM1_uc001bsh.1_Missense_Mutation_p.E1029V|PUM1_uc001bsj.1_Missense_Mutation_p.E1003V|PUM1_uc010oga.1_Missense_Mutation_p.E885V|PUM1_uc001bsk.1_Missense_Mutation_p.E1065V|PUM1_uc010ogb.1_Missense_Mutation_p.E968V|SNORD103A_uc009vts.1_Intron	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	1027	PUM-HD.|Pumilio 5.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		GTGAAGCTCCTCTAAAATAGG	0.517													27	117					0	0	0	0
EIF2C1	26523	broad.mit.edu	37	1	36367879	36367879	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:36367879C>G	uc001bzl.2	+	11	1551	c.1338C>G	c.(1336-1338)ATC>ATG	p.I446M	EIF2C1_uc001bzk.2_Missense_Mutation_p.I371M|EIF2C1_uc009vuy.2_Intron	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	446					negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GGATTGAGATCAAAGTCTGGG	0.572													4	83					0	0	0	0
THRAP3	9967	broad.mit.edu	37	1	36755352	36755352	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:36755352G>A	uc001cae.3	+	5	1956	c.1732G>A	c.(1732-1734)GAG>AAG	p.E578K	THRAP3_uc001caf.3_Missense_Mutation_p.E578K|THRAP3_uc001cag.1_Missense_Mutation_p.E578K	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	578					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CTCTTTTGATGAGGACCTCGC	0.512			T	USP6	aneurysmal bone cysts								5	48					0	0	0	0
PARS2	25973	broad.mit.edu	37	1	55224789	55224789	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:55224789T>A	uc001cxy.2	-	2	129	c.46A>T	c.(46-48)ACC>TCC	p.T16S		NM_152268	NP_689481	Q7L3T8	SYPM_HUMAN	prolyl-tRNA synthetase (mitochondrial)(putative)	16					prolyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|proline-tRNA ligase activity			ovary(2)	2					L-Proline(DB00172)	CGGCTGCAGGTGGCCAGGGCG	0.597													5	25					0	0	0	0
C8A	731	broad.mit.edu	37	1	57378249	57378249	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:57378249G>T	uc001cyo.2	+	10	1686	c.1554G>T	c.(1552-1554)CAG>CAT	p.Q518H		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	518	EGF-like.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						GCAGGTGCCAGTGCCGCCTGG	0.602													21	69					1.50039e-11	3.40786e-11	1	0
C1orf141	400757	broad.mit.edu	37	1	67558779	67558779	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:67558779G>C	uc001ddl.1	-	7	1223	c.1112C>G	c.(1111-1113)TCA>TGA	p.S371*	C1orf141_uc001ddm.1_Nonsense_Mutation_p.S371*|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	371										ovary(1)	1						AAAAGGCTTTGAGTAACATTT	0.318													8	59					0	0	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507579	74507579	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:74507579C>A	uc001dfy.3	-	7	1228	c.1036G>T	c.(1036-1038)GAT>TAT	p.D346Y	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	346										ovary(2)	2						AAACTGGTATCCAATTTTTCA	0.308													12	39					4.36969e-10	9.73627e-10	1	0
C1orf173	127254	broad.mit.edu	37	1	75036823	75036823	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:75036823G>A	uc001dgg.2	-	14	4790	c.4571C>T	c.(4570-4572)TCC>TTC	p.S1524F		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1524										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTTGTTGGGGGAAACATCTGC	0.512													19	114					0	0	0	0
C1orf173	127254	broad.mit.edu	37	1	75037379	75037379	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:75037379C>G	uc001dgg.2	-	14	4234	c.4015G>C	c.(4015-4017)GCT>CCT	p.A1339P		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1339	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ACTTCCACAGCCACAACCCTT	0.557													29	84					0	0	0	0
USP33	23032	broad.mit.edu	37	1	78200086	78200086	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:78200086T>C	uc001dht.2	-	8	910	c.563A>G	c.(562-564)AAA>AGA	p.K188R	USP33_uc001dhu.2_Missense_Mutation_p.K157R|USP33_uc001dhv.2_5'UTR|USP33_uc001dhw.2_Missense_Mutation_p.K188R	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	188					axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						TCCAATATTTTTCAAACCTGT	0.249													5	20					0	0	0	0
SPATA1	64173	broad.mit.edu	37	1	84991680	84991680	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:84991680C>A	uc001djz.1	+	6	733	c.534C>A	c.(532-534)TTC>TTA	p.F178L	SPATA1_uc001djx.2_Missense_Mutation_p.F178L|SPATA1_uc001djy.1_RNA	NM_001081472	NP_001074941			spermatogenesis associated 1											central_nervous_system(1)	1				Epithelial(280;4.36e-10)|all cancers(265;7.1e-09)|BRCA - Breast invasive adenocarcinoma(282;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(397;0.00286)|KIRC - Kidney renal clear cell carcinoma(1967;0.0111)		TAACTTTGTTCAAGGAGGAAC	0.373													6	33					1.12685e-05	2.25627e-05	1	0
BCL10	8915	broad.mit.edu	37	1	85733496	85733496	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:85733496C>T	uc001dkz.2	-	4	1221	c.516G>A	c.(514-516)CTG>CTA	p.L172L		NM_003921	NP_003912	O95999	BCL10_HUMAN	B-cell CLL/lymphoma 10	172					apoptosis|cellular response to mechanical stimulus|innate immune response|interleukin-6 biosynthetic process|lymphotoxin A biosynthetic process|negative regulation of mature B cell apoptosis|neural tube closure|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-8 biosynthetic process|positive regulation of mast cell cytokine production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of transcription, DNA-dependent|protein homooligomerization|response to molecule of bacterial origin|T cell receptor signaling pathway	CBM complex|cytosol|lysosome|membrane raft|nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protease binding|protein C-terminus binding|protein kinase B binding|protein self-association|transcription coactivator activity|ubiquitin binding|ubiquitin protein ligase binding			lung(2)	2				all cancers(265;0.0114)|Epithelial(280;0.0311)		CAGGCAAATTCAGAGAAGAAT	0.463			T	IGH@	MALT 								14	55					0	0	0	0
HFM1	164045	broad.mit.edu	37	1	91782033	91782033	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:91782033C>A	uc001doa.3	-	26	2913	c.2813G>T	c.(2812-2814)GGT>GTT	p.G938V	HFM1_uc009wdb.2_RNA|HFM1_uc010osu.1_Missense_Mutation_p.G617V|HFM1_uc001dob.3_Missense_Mutation_p.C126F|HFM1_uc010osv.1_Missense_Mutation_p.G622V	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	938	SEC63.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		CAATGTTATACCTGTGGAAAA	0.219													9	48					1.12685e-05	2.25627e-05	1	0
GCLM	2730	broad.mit.edu	37	1	94354598	94354598	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:94354598C>T	uc001dqg.1	-	7	1066	c.773G>A	c.(772-774)GGA>GAA	p.G258E		NM_002061	NP_002052	P48507	GSH0_HUMAN	glutamate-cysteine ligase regulatory protein	258					glutamate metabolic process|glutathione biosynthetic process|regulation of blood vessel size|response to drug|response to oxidative stress|xenobiotic metabolic process	cytosol|soluble fraction	glutamate-cysteine ligase catalytic subunit binding			ovary(1)	1		all_lung(203;0.000815)|Lung NSC(277;0.00363)		all cancers(265;0.00566)|GBM - Glioblastoma multiforme(16;0.0203)|Epithelial(280;0.131)	L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	TTTGATAATTCCTCTACTTTT	0.413													5	65					0	0	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94650455	94650455	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:94650455C>T	uc001dqj.3	-	18	2451	c.2082G>A	c.(2080-2082)GAG>GAA	p.E694E	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.E260E	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	694	Rho-GAP.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TATTTTCAATCTCTGAGGCAC	0.323													6	44					0	0	0	0
DBT	1629	broad.mit.edu	37	1	100681578	100681578	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:100681578G>C	uc001dta.2	-	6	766	c.733C>G	c.(733-735)CCG>GCG	p.P245A	DBT_uc010oug.1_Missense_Mutation_p.P64A	NM_001918	NP_001909	P11182	ODB2_HUMAN	dihydrolipoamide branched chain transacylase	245					branched chain family amino acid catabolic process|fatty-acyl-CoA biosynthetic process	microtubule cytoskeleton|mitochondrial alpha-ketoglutarate dehydrogenase complex|mitochondrial nucleoid	acyltransferase activity|cofactor binding|dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity|protein binding			pancreas(1)	1		all_epithelial(167;5.4e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0739)|all cancers(265;0.123)|COAD - Colon adenocarcinoma(174;0.154)|Lung(183;0.199)		GTGAATACCGGAGGTTTTGAT	0.388													18	101					0	0	0	0
SLC30A7	148867	broad.mit.edu	37	1	101361893	101361893	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:101361893G>T	uc001dtn.2	+	1	262	c.75G>T	c.(73-75)TGG>TGT	p.W25C	EXTL2_uc001dtk.1_5'Flank|EXTL2_uc001dtl.1_5'Flank|EXTL2_uc010ouk.1_5'Flank|EXTL2_uc001dtm.1_5'Flank|SLC30A7_uc001dto.2_Missense_Mutation_p.W25C	NM_001144884	NP_001138356	Q8NEW0	ZNT7_HUMAN	zinc transporter like 2	25	Cytoplasmic (Potential).				zinc ion transport	Golgi apparatus|integral to membrane	cation transmembrane transporter activity|protein binding				0		all_epithelial(167;0.000445)|all_lung(203;0.00645)|Lung NSC(277;0.0119)		Epithelial(280;0.0437)|all cancers(265;0.0498)|COAD - Colon adenocarcinoma(174;0.162)|Colorectal(144;0.19)|Lung(183;0.201)		TCTCGGGCTGGTTTAGGTGCG	0.587													10	63					0.000673444	0.00128547	1	0
DDX20	11218	broad.mit.edu	37	1	112304903	112304903	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:112304903G>C	uc001ebs.2	+	8	1405	c.1048G>C	c.(1048-1050)GAT>CAT	p.D350H	DDX20_uc010owf.1_Missense_Mutation_p.D112H|DDX20_uc001ebt.2_5'UTR	NM_007204	NP_009135	Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	350	Helicase C-terminal.				assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding			lung(1)|kidney(1)	2		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCAGCGTCTTGATGCTATGGC	0.353													4	90					0	0	0	0
RSBN1	54665	broad.mit.edu	37	1	114354824	114354824	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:114354824C>G	uc001edq.2	-	1	247	c.211G>C	c.(211-213)GAG>CAG	p.E71Q	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	71						nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCCTTCCCCTCTTTGTCCGGC	0.652													4	108					0	0	0	0
NRAS	4893	broad.mit.edu	37	1	115256551	115256551	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:115256551C>A	uc009wgu.2	-	3	414	c.160G>T	c.(160-162)GAC>TAC	p.D54Y		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	54					activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity			haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCCAGTATGTCCAACAAACAG	0.458		50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			32	97					4.34311e-12	9.94164e-12	1	0
TTF2	8458	broad.mit.edu	37	1	117624455	117624455	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:117624455G>A	uc001egy.2	+	10	1809	c.1789G>A	c.(1789-1791)GAT>AAT	p.D597N	TTF2_uc001egx.1_Missense_Mutation_p.D597N	NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	597	Helicase ATP-binding.|ATP (Potential).				mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		TCTAGCAGATGATATGGGCTT	0.403													8	43					0	0	0	0
TTF2	8458	broad.mit.edu	37	1	117637947	117637947	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:117637947C>G	uc001egy.2	+	19	3013	c.2993C>G	c.(2992-2994)GCA>GGA	p.A998G		NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	998	Helicase C-terminal.				mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		TCTCTGTTGGCAGAATTGGAG	0.279													3	58					0	0	0	0
GJA5	2702	broad.mit.edu	37	1	147230503	147230503	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:147230503G>A	uc001eps.1	-	2	985	c.844C>T	c.(844-846)CCC>TCC	p.P282S	GJA5_uc001ept.1_Missense_Mutation_p.P282S	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	282	Cytoplasmic (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			TTGCTGAAGGGATTGAAGAAT	0.542													5	144					0	0	0	0
APH1A	51107	broad.mit.edu	37	1	150239858	150239858	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:150239858T>A	uc001ety.1	-	4	701	c.379A>T	c.(379-381)ATC>TTC	p.I127F	APH1A_uc010pbx.1_Missense_Mutation_p.I57F|APH1A_uc001etz.1_Missense_Mutation_p.I127F|APH1A_uc001eua.1_Missense_Mutation_p.I127F|APH1A_uc010pby.1_Missense_Mutation_p.I70F|APH1A_uc001eub.1_Missense_Mutation_p.I11F|APH1A_uc010pbz.1_Missense_Mutation_p.I11F	NM_001077628	NP_001071096	Q96BI3	APH1A_HUMAN	anterior pharynx defective 1 homolog A isoform	127	Helical; Name=4; (Potential).				amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to plasma membrane	protein binding			ovary(1)|lung(1)	2	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCACTGATGATACCGAAGGAG	0.498													25	37					0	0	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059098	152059098	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:152059098C>G	uc001ezo.1	-	3	1125	c.1060G>C	c.(1060-1062)GAG>CAG	p.E354Q		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	354							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CCATAATCCTCAGGTTCACCC	0.418													33	265					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152278665	152278665	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:152278665T>C	uc001ezu.1	-	3	8733	c.8697A>G	c.(8695-8697)GGA>GGG	p.G2899G		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2899	Ser-rich.|Filaggrin 17.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTCTGAATGTCCCTCACTGT	0.567									Ichthyosis				12	484					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152284282	152284282	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:152284282G>C	uc001ezu.1	-	3	3116	c.3080C>G	c.(3079-3081)TCA>TGA	p.S1027*	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1027	Filaggrin 6.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTGGACTTGATCTTGCCTG	0.572									Ichthyosis				202	432					0	0	0	0
FLG2	388698	broad.mit.edu	37	1	152324389	152324389	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:152324389T>G	uc001ezw.3	-	3	5946	c.5873A>C	c.(5872-5874)TAC>TCC	p.Y1958S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1958	Filaggrin 8.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTGTCACTGTACTCACTGTG	0.527													4	402					0	0	0	0
LCE4A	199834	broad.mit.edu	37	1	152681605	152681605	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:152681605C>A	uc001fak.2	+	1	83	c.54C>A	c.(52-54)ATC>ATA	p.I18I		NM_178356	NP_848133	Q5TA78	LCE4A_HUMAN	late cornified envelope 4A	18	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.116)			AGTGTCCTATCCCCAAGTATC	0.517													24	153					5.45024e-15	1.29655e-14	1	0
SPRR1B	6699	broad.mit.edu	37	1	153004978	153004978	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:153004978G>A	uc001fba.2	+	2	221	c.157G>A	c.(157-159)GTG>ATG	p.V53M	SPRR1B_uc009wnx.1_Splice_Site	NM_003125	NP_003116	P22528	SPR1B_HUMAN	small proline-rich protein 1B	53	6 X 8 AA approximate tandem repeats.|3.				keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCACCCCAAAGTGCCCGAGCC	0.632													19	177					0	0	0	0
CRTC2	200186	broad.mit.edu	37	1	153926054	153926054	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:153926054C>G	uc010ped.1	-	5	533	c.463G>C	c.(463-465)GAG>CAG	p.E155Q	CRTC2_uc001fde.3_RNA|CRTC2_uc001fdf.3_5'UTR	NM_181715	NP_859066	Q53ET0	CRTC2_HUMAN	CREB regulated transcription coactivator 2	155					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)	2	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TGCCCCTTCTCTGCAGGGAAA	0.517													4	40					0	0	0	0
GBA	2629	broad.mit.edu	37	1	155209413	155209413	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:155209413C>T	uc001fjh.2	-	4	598	c.448G>A	c.(448-450)GAA>AAA	p.E150K	RAG1AP1_uc010pey.1_Intron|GBA_uc010pfw.1_Intron|GBA_uc010pfx.1_Intron|GBA_uc001fji.2_Missense_Mutation_p.E150K|GBA_uc001fjj.2_Missense_Mutation_p.E150K|GBA_uc001fjk.2_Missense_Mutation_p.E150K|GBA_uc001fjl.2_Missense_Mutation_p.E150K|GBA_uc010pfy.1_Missense_Mutation_p.E63K|GBA_uc009wqk.1_Missense_Mutation_p.E63K	NM_000157	NP_000148	P04062	GLCM_HUMAN	glucocerebrosidase precursor	150					carbohydrate metabolic process|cell death|cellular response to tumor necrosis factor|ceramide biosynthetic process|glucosylceramide catabolic process|lysosome organization|negative regulation of interleukin-6 production|negative regulation of MAP kinase activity|positive regulation of protein dephosphorylation|sphingosine biosynthetic process|termination of signal transduction	lysosomal lumen|lysosomal membrane	cation binding|glucosylceramidase activity|receptor binding			ovary(1)|skin(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)		Alglucerase(DB00088)|Imiglucerase(DB00053)	TCACCTTCTTCAGAGAAGTAC	0.363									Gaucher_disease_type_I				8	44					0	0	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155924708	155924708	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:155924708G>A	uc001fmt.2	-	14	1886	c.1768C>T	c.(1768-1770)CTG>TTG	p.L590L	ARHGEF2_uc001fmr.2_Silent_p.L562L|ARHGEF2_uc001fms.2_Silent_p.L589L|ARHGEF2_uc001fmu.2_Silent_p.L634L	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	590	Potential.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					ATTCGCCGCAGGTAAGCCTCA	0.313													35	80					0	0	0	0
FCRL4	83417	broad.mit.edu	37	1	157545497	157545497	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:157545497C>A	uc001fqw.2	-	11	1589	c.1453G>T	c.(1453-1455)GAG>TAG	p.E485*	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	485	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				ACCTTATCCTCTAGAAGTGTC	0.458													37	86					7.53189e-24	1.8597e-23	1	0
FCRL4	83417	broad.mit.edu	37	1	157556230	157556230	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:157556230C>G	uc001fqw.2	-	6	999	c.863G>C	c.(862-864)GGG>GCG	p.G288A	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	288	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				CAGGAGCACCCCAGACACAGG	0.602													25	60					0	0	0	0
CD1D	912	broad.mit.edu	37	1	158153926	158153926	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:158153926C>T	uc001frr.2	+	7	1493	c.994C>T	c.(994-996)CAG>TAG	p.Q332*	CD1D_uc009wss.2_Nonsense_Mutation_p.Q239*	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	332	Cytoplasmic (Potential).|Internalization signal.				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					CAGTTCCTATCAGGGCGTCCT	0.512													8	136					0	0	0	0
OR6N2	81442	broad.mit.edu	37	1	158746552	158746552	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:158746552G>T	uc010pir.1	-	1	874	c.874C>A	c.(874-876)CTT>ATT	p.L292I		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					TTGTTACGAAGACTGTAGATA	0.418													27	86					1.55811e-20	3.80968e-20	1	0
OR6N2	81442	broad.mit.edu	37	1	158746962	158746962	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:158746962C>A	uc010pir.1	-	1	464	c.464G>T	c.(463-465)TGT>TTT	p.C155F		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					AGAAATGGGACACAGGAAGCC	0.498													18	69					8.34094e-07	1.73121e-06	1	0
MNDA	4332	broad.mit.edu	37	1	158812150	158812150	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:158812150C>A	uc001fsz.1	+	2	407	c.207C>A	c.(205-207)GCC>GCA	p.A69A		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	69	DAPIN.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					TAGAACTTGCCAAAGATATGC	0.358													31	74					5.60225e-13	1.30447e-12	1	0
OR10J1	26476	broad.mit.edu	37	1	159410397	159410397	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:159410397G>C	uc010piv.1	+	1	849	c.849G>C	c.(847-849)CTG>CTC	p.L283L	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	283	Helical; Name=7; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					ATGACCAGCTGATCTCGGTGA	0.522													22	88					0	0	0	0
ATP1A2	477	broad.mit.edu	37	1	160098579	160098579	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:160098579C>A	uc001fvc.2	+	9	1287	c.1155C>A	c.(1153-1155)ACC>ACA	p.T385T	ATP1A2_uc001fvb.2_Silent_p.T385T|ATP1A2_uc010piz.1_Silent_p.T230T|ATP1A2_uc001fvd.2_Silent_p.T121T|ATP1A2_uc009wtg.1_Silent_p.T73T	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	385	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			ACCGCATGACCGTCGCCCACA	0.592													32	84					2.68265e-12	6.19724e-12	1	0
NUF2	83540	broad.mit.edu	37	1	163317670	163317670	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:163317670C>A	uc001gcq.1	+	12	1366	c.1066C>A	c.(1066-1068)CAA>AAA	p.Q356K	NUF2_uc001gcr.1_Missense_Mutation_p.Q356K|NUF2_uc009wvc.1_Missense_Mutation_p.Q309K	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	356	Interaction with the N-terminus of NDC80.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					TGCCACAGCACAATTCAAAAT	0.323													5	19					0.000602214	0.00115452	1	0
DUSP27	92235	broad.mit.edu	37	1	167095719	167095719	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:167095719C>T	uc001geb.1	+	5	1351	c.1351C>T	c.(1351-1353)CTG>TTG	p.L451L		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	451					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CATCTGGGTCCTGAAGCAGCA	0.662													5	8					0	0	0	0
ATP1B1	481	broad.mit.edu	37	1	169094256	169094256	+	RNA	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:169094256A>G	uc001gfs.1	+	3		c.482A>G			uc010plp.1_5'Flank			P05026	AT1B1_HUMAN	Synthetic construct DNA, clone: pF1KB8186, Homo sapiens ATP1B1 gene for ATPase, Na+/K+ transporting, beta 1 polypeptide, without stop codon, in Flexi system.						ATP biosynthetic process|blood coagulation|leukocyte migration	sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	all_hematologic(923;0.208)					GAGGGATGACATGATTTTTGA	0.373													8	134					0	0	0	0
C1orf129	80133	broad.mit.edu	37	1	170961323	170961323	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:170961323G>A	uc001ghg.2	+	12	1177	c.1047G>A	c.(1045-1047)TGG>TGA	p.W349*	C1orf129_uc009wvy.2_Nonsense_Mutation_p.W156*|C1orf129_uc010plz.1_Nonsense_Mutation_p.W349*	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	349							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TACAGATGTGGAAGGCGGCAT	0.478													5	41					0	0	0	0
FMO4	2329	broad.mit.edu	37	1	171293343	171293343	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:171293343G>A	uc001gho.2	+	5	605	c.388G>A	c.(388-390)GAG>AAG	p.E130K		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	130					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					TGTTGTCACAGAGACAGAGGG	0.458													33	401					0	0	0	0
RC3H1	149041	broad.mit.edu	37	1	173934113	173934113	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:173934113G>C	uc001gju.3	-	9	1567	c.1480C>G	c.(1480-1482)CCA>GCA	p.P494A	RC3H1_uc010pms.1_Missense_Mutation_p.P494A|RC3H1_uc001gjv.2_Missense_Mutation_p.P494A|RC3H1_uc010pmt.1_Missense_Mutation_p.P494A	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	494					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						ATTCCATTTGGCAGAGCAGGA	0.478													34	87					0	0	0	0
PAPPA2	60676	broad.mit.edu	37	1	176640191	176640191	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:176640191C>G	uc001gkz.2	+	4	3241	c.2077C>G	c.(2077-2079)CGG>GGG	p.R693G	PAPPA2_uc001gky.1_Missense_Mutation_p.R693G|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	693	Metalloprotease.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CAGCTCAGTGCGGGAAGACCT	0.507													63	148					0	0	0	0
ABL2	27	broad.mit.edu	37	1	179084079	179084079	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:179084079C>T	uc001gmj.3	-	9	1782	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K	ABL2_uc010pnf.1_Missense_Mutation_p.E499K|ABL2_uc010png.1_Missense_Mutation_p.E478K|ABL2_uc010pnh.1_Missense_Mutation_p.E478K|ABL2_uc009wxe.2_Missense_Mutation_p.E478K|ABL2_uc001gmg.3_Missense_Mutation_p.E484K|ABL2_uc001gmi.3_Missense_Mutation_p.E484K|ABL2_uc001gmh.3_Missense_Mutation_p.E463K|ABL2_uc010pne.1_Missense_Mutation_p.E463K	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	499	Protein kinase.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TATCCTTTTTCTAGTAGGTCA	0.408			T	ETV6	AML								7	77					0	0	0	0
C1orf125	126859	broad.mit.edu	37	1	179398721	179398721	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:179398721C>T	uc001gmo.2	+	13	1426	c.1299C>T	c.(1297-1299)TAC>TAT	p.Y433Y	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Silent_p.Y221Y|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Silent_p.Y433Y	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	433											0						GGAATAAATACACTAAGCATT	0.333													6	39					0	0	0	0
NMNAT2	23057	broad.mit.edu	37	1	183230439	183230439	+	Splice_Site	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:183230439C>G	uc001gqc.1	-	9	987	c.652_splice	c.e9-1	p.M218_splice	NMNAT2_uc009wye.1_Splice_Site|NMNAT2_uc001gqb.1_Splice_Site_p.M213_splice	NM_015039	NP_055854	Q9BZQ4	NMNA2_HUMAN	nicotinamide mononucleotide adenylyltransferase						water-soluble vitamin metabolic process	Golgi membrane|nucleus	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity			skin(1)	1						TCACCTCCATCTAAAGAAACA	0.498													20	35					0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	185833652	185833652	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:185833652G>A	uc001grq.1	+	3	619	c.390G>A	c.(388-390)TTG>TTA	p.L130L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	130	VWFA.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAATTGCCTTGGAAATTTCTC	0.408													6	43					0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	185972962	185972962	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:185972962G>T	uc001grq.1	+	29	4690	c.4461G>T	c.(4459-4461)TGG>TGT	p.W1487C		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1487	Ig-like C2-type 12.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ATATTCATTGGTTCAAAGATG	0.403													6	56					0.00307968	0.00575353	1	0
HMCN1	83872	broad.mit.edu	37	1	186064470	186064470	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:186064470G>T	uc001grq.1	+	68	10619	c.10390G>T	c.(10390-10392)GCT>TCT	p.A3464S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3464	Ig-like C2-type 33.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGGAACCCCAGCTCCCAGTAT	0.517													8	39					0.000157383	0.000305386	1	0
FAM5C	339479	broad.mit.edu	37	1	190067524	190067524	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:190067524T>A	uc001gse.1	-	8	2157	c.1925A>T	c.(1924-1926)GAG>GTG	p.E642V	FAM5C_uc010pot.1_Missense_Mutation_p.E540V	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	642						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GTAAATGCTCTCATTACCATT	0.413													34	177					0	0	0	0
RGS1	5996	broad.mit.edu	37	1	192548282	192548282	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:192548282C>G	uc001gsi.1	+	5	526	c.460C>G	c.(460-462)CGC>GGC	p.R154G		NM_002922	NP_002913	Q08116	RGS1_HUMAN	regulator of G-protein signalling 1	154	RGS.				immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of signal transduction	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity				0		Breast(1374;0.188)				TATTGACTTCCGCACTCGAGA	0.333													13	71					0	0	0	0
ZBTB41	360023	broad.mit.edu	37	1	197128811	197128811	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:197128811G>C	uc001gtx.1	-	10	2477	c.2408C>G	c.(2407-2409)TCT>TGT	p.S803C	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	803					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						TACTTCAGCAGATACATTCTG	0.428													12	104					0	0	0	0
PTPRC	5788	broad.mit.edu	37	1	198682089	198682089	+	Silent	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:198682089A>G	uc001gur.1	+	12	1353	c.1173A>G	c.(1171-1173)GGA>GGG	p.G391G	PTPRC_uc001gus.1_Silent_p.G343G|PTPRC_uc001gut.1_Silent_p.G230G|PTPRC_uc009wzf.1_Silent_p.G279G|PTPRC_uc010ppg.1_Silent_p.G327G	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	391	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						CAGGTCCAGGAGAGCCTCAGA	0.318													26	59					0	0	0	0
FAM58B	339521	broad.mit.edu	37	1	200182931	200182931	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:200182931C>A	uc009wzi.1	+	1	276	c.240C>A	c.(238-240)TCC>TCA	p.S80S		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	80					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					CCATGTCTTCCATTTACTTGG	0.527													53	155					1.83081e-24	4.52681e-24	1	0
C4BPB	725	broad.mit.edu	37	1	207265029	207265029	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:207265029C>G	uc001hfj.2	+	4	403	c.273C>G	c.(271-273)TTC>TTG	p.F91L	C4BPB_uc001hfi.2_Missense_Mutation_p.F90L|C4BPB_uc001hfk.2_Missense_Mutation_p.F90L|C4BPB_uc001hfl.2_Missense_Mutation_p.F91L|C4BPB_uc009xcd.2_Missense_Mutation_p.F81L|C4BPB_uc001hfm.2_Missense_Mutation_p.F91L|C4BPB_uc010pse.1_Missense_Mutation_p.F81L	NM_001017365	NP_001017365	P20851	C4BPB_HUMAN	complement component 4 binding protein, beta	91	Sushi 2.				blood coagulation|complement activation, classical pathway|innate immune response	extracellular region				ovary(1)	1						ATGGAGAGTTCAGTTCTTCAG	0.483													7	123					0	0	0	0
C4BPB	725	broad.mit.edu	37	1	207265065	207265065	+	Missense_Mutation	SNP	C	G	G	rs139041322		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:207265065C>G	uc001hfj.2	+	4	439	c.309C>G	c.(307-309)ATC>ATG	p.I103M	C4BPB_uc001hfi.2_Missense_Mutation_p.I102M|C4BPB_uc001hfk.2_Missense_Mutation_p.I102M|C4BPB_uc001hfl.2_Missense_Mutation_p.I103M|C4BPB_uc009xcd.2_Missense_Mutation_p.I93M|C4BPB_uc001hfm.2_Missense_Mutation_p.I103M|C4BPB_uc010pse.1_Missense_Mutation_p.I93M	NM_001017365	NP_001017365	P20851	C4BPB_HUMAN	complement component 4 binding protein, beta	103	Sushi 2.				blood coagulation|complement activation, classical pathway|innate immune response	extracellular region				ovary(1)	1						GTGACAAAATCACGTTTATGT	0.483													6	101					0	0	0	0
CR1	1378	broad.mit.edu	37	1	207753627	207753627	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:207753627C>T	uc001hfy.2	+	22	3769	c.3629C>T	c.(3628-3630)CCA>CTA	p.P1210L	CR1_uc009xcl.1_Missense_Mutation_p.P760L|CR1_uc001hfx.2_Missense_Mutation_p.P1660L	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1210	Extracellular (Potential).|Sushi 19.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GAGCATACCCCAAGCCATCAG	0.522													10	177					0	0	0	0
INTS7	25896	broad.mit.edu	37	1	212151750	212151750	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:212151750G>A	uc001hiw.1	-	11	1439	c.1334C>T	c.(1333-1335)GCC>GTC	p.A445V	INTS7_uc009xdb.1_Missense_Mutation_p.A445V|INTS7_uc001hix.1_Missense_Mutation_p.A321V|INTS7_uc001hiy.1_Missense_Mutation_p.A445V|INTS7_uc010pta.1_Missense_Mutation_p.A396V	NM_015434	NP_056249	Q9NVH2	INT7_HUMAN	integrator complex subunit 7	445					snRNA processing	integrator complex	protein binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00584)|all cancers(67;0.0318)|Epithelial(68;0.0852)		CAAAATCCGGGCAGCGTCTTG	0.532													12	77					0	0	0	0
VASH2	79805	broad.mit.edu	37	1	213146178	213146178	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:213146178G>T	uc001hjy.2	+	5	958	c.754G>T	c.(754-756)GTC>TTC	p.V252F	VASH2_uc001hjv.2_RNA|VASH2_uc001hjx.2_Missense_Mutation_p.V187F|VASH2_uc010ptn.1_Missense_Mutation_p.V148F|VASH2_uc001hjw.2_Missense_Mutation_p.V208F	NM_001136475	NP_001129947	Q86V25	VASH2_HUMAN	vasohibin 2 isoform 3	252					positive regulation of angiogenesis|positive regulation of endothelial cell proliferation	cytoplasm					0				OV - Ovarian serous cystadenocarcinoma(81;0.00479)|all cancers(67;0.00844)|GBM - Glioblastoma multiforme(131;0.0496)|Epithelial(68;0.0986)		TGGGCTGTACGTCCCCCATGA	0.498													32	60					1.36161e-19	3.3154e-19	1	0
PROX1	5629	broad.mit.edu	37	1	214171246	214171246	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:214171246C>A	uc001hkh.2	+	2	1640	c.1368C>A	c.(1366-1368)GCC>GCA	p.A456A	PROX1_uc001hkg.1_Silent_p.A456A	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	456				PAA -> LV (in Ref. 1; AAC50656).	aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		CCGGCCCTGCCGCTGGCGGCC	0.642													33	102					4.4194e-11	1.0012e-10	1	0
ESRRG	2104	broad.mit.edu	37	1	216850521	216850521	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:216850521C>T	uc001hkw.1	-	2	535	c.369G>A	c.(367-369)ATG>ATA	p.M123I	ESRRG_uc001hky.1_Missense_Mutation_p.M100I|ESRRG_uc009xdp.1_Missense_Mutation_p.M100I|ESRRG_uc001hkz.1_Missense_Mutation_p.M100I|ESRRG_uc010puc.1_Missense_Mutation_p.M100I|ESRRG_uc001hla.1_Missense_Mutation_p.M100I|ESRRG_uc001hlb.1_Missense_Mutation_p.M100I|ESRRG_uc010pud.1_Intron|ESRRG_uc001hlc.1_Missense_Mutation_p.M100I|ESRRG_uc001hld.1_Missense_Mutation_p.M100I|ESRRG_uc001hkx.1_Missense_Mutation_p.M128I|ESRRG_uc009xdo.1_Missense_Mutation_p.M100I|ESRRG_uc001hle.1_Missense_Mutation_p.M100I	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	123					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	GTCTCTTGGGCATCGAGTTGA	0.498													20	79					0	0	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220355610	220355610	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:220355610G>C	uc010puk.1	-	21	2463	c.2299C>G	c.(2299-2301)CAG>GAG	p.Q767E	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_Missense_Mutation_p.Q347E	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	767					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		AACAACAGCTGAGGGCTAAGA	0.408													14	93					0	0	0	0
DISP1	84976	broad.mit.edu	37	1	223176180	223176180	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:223176180G>T	uc001hnu.1	+	8	1588	c.1441G>T	c.(1441-1443)GTG>TTG	p.V481L		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	481					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TTCTGACGGCGTGACTACCAT	0.418													24	74					4.26978e-12	9.78653e-12	1	0
CAPN2	824	broad.mit.edu	37	1	223933090	223933090	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:223933090C>G	uc001hob.3	+	4	733	c.509C>G	c.(508-510)TCA>TGA	p.S170*	CAPN2_uc010puy.1_Nonsense_Mutation_p.S92*	NM_001748	NP_001739	P17655	CAN2_HUMAN	calpain 2 isoform 1	170	Calpain catalytic.				proteolysis	cytoplasm|plasma membrane				lung(3)|breast(1)|skin(1)	5				GBM - Glioblastoma multiforme(131;0.109)		TTTGTGCATTCAGCCGAAGGG	0.612													3	79					0	0	0	0
LEFTY1	10637	broad.mit.edu	37	1	226076549	226076549	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:226076549G>C	uc001hpo.2	-	1	288	c.218C>G	c.(217-219)TCC>TGC	p.S73C	LEFTY1_uc010pvj.1_Intron|LEFTY1_uc009xej.1_Missense_Mutation_p.S73C	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	73					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					CTTTCCGCGGGAGCGGTCCCC	0.692													12	31					0	0	0	0
GJC2	57165	broad.mit.edu	37	1	228346341	228346341	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:228346341G>C	uc001hsk.2	+	2	1057	c.882G>C	c.(880-882)GCG>GCC	p.A294A		NM_020435	NP_065168	Q5T442	CXG2_HUMAN	gap junction protein, gamma 2, 47kDa	294	Cytoplasmic (Potential).				cell death	connexon complex|integral to membrane					0		Prostate(94;0.0405)				TGGGCAGCGCGCAGGACGCGG	0.542													14	37					0	0	0	0
C1orf124	83932	broad.mit.edu	37	1	231488530	231488530	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:231488530C>G	uc001hur.2	+	5	1341	c.893C>G	c.(892-894)TCT>TGT	p.S298C	C1orf124_uc001hus.2_3'UTR|C1orf124_uc001hut.2_3'UTR	NM_032018	NP_114407	Q9H040	CA124_HUMAN	hypothetical protein LOC83932 isoform a	298					DNA repair	nuclear speck	DNA binding|metal ion binding				0	Breast(184;0.0871)	all_cancers(173;0.151)|Prostate(94;0.183)				AGACCTAATTCTAAAATCAAG	0.353													3	41					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237777906	237777906	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:237777906T>C	uc001hyl.1	+	37	5598	c.5478T>C	c.(5476-5478)TAT>TAC	p.Y1826Y		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1826	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGCTTTTCTATACCCTGCTGA	0.493													47	181					0	0	0	0
FMN2	56776	broad.mit.edu	37	1	240255773	240255773	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:240255773A>G	uc010pyd.1	+	1	589	c.364A>G	c.(364-366)AGC>GGC	p.S122G	FMN2_uc010pye.1_Missense_Mutation_p.S122G	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	122					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TCCAGACCTCAGCCTCTCGGC	0.687													4	11					0	0	0	0
FMN2	56776	broad.mit.edu	37	1	240492684	240492684	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:240492684C>G	uc010pyd.1	+	10	4578	c.4353C>G	c.(4351-4353)GTC>GTG	p.V1451V	FMN2_uc010pye.1_Silent_p.V1455V|FMN2_uc010pyf.1_Silent_p.V97V|FMN2_uc010pyg.1_Silent_p.V47V	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1451	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CAGAGCGAGTCTTTTGCATCC	0.373													9	118					0	0	0	0
CHML	1122	broad.mit.edu	37	1	241798317	241798317	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:241798317G>C	uc001hzd.2	-	1	916	c.752C>G	c.(751-753)TCA>TGA	p.S251*	OPN3_uc001hza.2_Intron|OPN3_uc001hzb.2_Intron|OPN3_uc001hzc.2_Intron	NM_001821	NP_001812	P26374	RAE2_HUMAN	choroideremia-like Rab escort protein 2	251					intracellular protein transport|visual perception	Rab-protein geranylgeranyltransferase complex	GTPase activator activity|Rab geranylgeranyltransferase activity			ovary(4)|skin(2)	6	Ovarian(103;0.103)|all_lung(81;0.23)	all_cancers(173;0.0231)	OV - Ovarian serous cystadenocarcinoma(106;0.0125)			ACTAACATCTGATTTGATTAA	0.343													7	63					0	0	0	0
NLRP3	114548	broad.mit.edu	37	1	247588696	247588696	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:247588696C>A	uc001icr.2	+	5	2089	c.1951C>A	c.(1951-1953)CCC>ACC	p.P651T	NLRP3_uc001ics.2_Missense_Mutation_p.P651T|NLRP3_uc001icu.2_Missense_Mutation_p.P651T|NLRP3_uc001icw.2_Missense_Mutation_p.P651T|NLRP3_uc001icv.2_Missense_Mutation_p.P651T|NLRP3_uc010pyw.1_Missense_Mutation_p.P649T|NLRP3_uc001ict.1_Missense_Mutation_p.P649T	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	651					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GGACTATTTCCCCAAGATTGA	0.493													9	47					3.07112e-06	6.27794e-06	1	0
Unknown	0	broad.mit.edu	37	1	247902360	247902360	+	IGR	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:247902360C>T								OR6F1 (26303 upstream) : OR1C1 (18406 downstream)																							TGTCCTGGCTCAACAGAGGGG	0.537													9	110					0	0	0	0
OR2L1P	26247	broad.mit.edu	37	1	248154121	248154121	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:248154121G>T	uc001idv.1	+	1	553	c.309G>T	c.(307-309)TTG>TTT	p.L103F	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						CAGCTATGTTGACCCTAGCCT	0.453													11	121					3.86212e-05	7.65457e-05	1	0
OR2T33	391195	broad.mit.edu	37	1	248437009	248437009	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:248437009G>T	uc010pzi.1	-	1	108	c.108C>A	c.(106-108)TCC>TCA	p.S36S		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGCCAAACAGGGAGGTCAAAA	0.488													21	83					3.1745e-13	7.41137e-13	1	0
OR2T3	343173	broad.mit.edu	37	1	248637210	248637210	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:248637210C>T	uc001iel.1	+	1	559	c.559C>T	c.(559-561)CCT>TCT	p.P187S		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTGTGAGACTCCTGCCCTGCT	0.512													91	205					0	0	0	0
OR2G6	391211	broad.mit.edu	37	1	248685139	248685139	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:248685139C>A	uc001ien.1	+	1	192	c.192C>A	c.(190-192)AGC>AGA	p.S64R		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCTTCCTCAGCAACCTCTCGT	0.483													33	63					6.50621e-10	1.44418e-09	1	0
ITGA8	8516	broad.mit.edu	37	10	15686196	15686196	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:15686196G>A	uc001ioc.1	-	13	1232	c.1232C>T	c.(1231-1233)GCA>GTA	p.A411V	ITGA8_uc010qcb.1_Missense_Mutation_p.A396V	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	411	Extracellular (Potential).|FG-GAP 6.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						ATCCTTGCCTGCAAAAGGCAC	0.358													13	22					0	0	0	0
NSUN6	221078	broad.mit.edu	37	10	18885189	18885189	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:18885189C>T	uc010qcp.1	-	7	1143	c.725G>A	c.(724-726)TGT>TAT	p.C242Y		NM_182543	NP_872349	Q8TEA1	NSUN6_HUMAN	NOL1/NOP2/Sun domain family, member 6	242	S-adenosyl-L-methionine binding (By similarity).						methyltransferase activity|RNA binding			ovary(2)	2						AGGTGCTGCACACAAGTCTAG	0.388													11	52					0	0	0	0
ARHGAP12	94134	broad.mit.edu	37	10	32101646	32101646	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:32101646C>G	uc001ivz.1	-	15	2210	c.1940G>C	c.(1939-1941)GGT>GCT	p.G647A	ARHGAP12_uc001ivy.1_Missense_Mutation_p.G593A|ARHGAP12_uc009xls.2_Missense_Mutation_p.G598A|ARHGAP12_uc001iwb.1_Missense_Mutation_p.G640A|ARHGAP12_uc001iwc.1_Missense_Mutation_p.G615A|ARHGAP12_uc009xlq.1_Missense_Mutation_p.G568A|ARHGAP12_uc001iwd.1_Missense_Mutation_p.G615A	NM_018287	NP_060757	Q8IWW6	RHG12_HUMAN	Rho GTPase activating protein 12	647					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		Prostate(175;0.0199)				TTTAATATAACCTTTTTCACG	0.308													6	47					0	0	0	0
MAPK8	5599	broad.mit.edu	37	10	49633957	49633957	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:49633957G>C	uc009xnz.2	+	8	939	c.715G>C	c.(715-717)GAA>CAA	p.E239Q	MAPK8_uc001jgl.2_Missense_Mutation_p.E239Q|MAPK8_uc001jgm.2_Missense_Mutation_p.E239Q|MAPK8_uc001jgo.2_Missense_Mutation_p.E239Q|MAPK8_uc009xoa.2_Intron|MAPK8_uc001jgn.2_Missense_Mutation_p.E239Q|MAPK8_uc010qgk.1_Missense_Mutation_p.E239Q|MAPK8_uc001jgp.2_Missense_Mutation_p.E239Q|MAPK8_uc001jgq.2_Missense_Mutation_p.E239Q	NM_139047	NP_620635	P45983	MK08_HUMAN	mitogen-activated protein kinase 8 isoform JNK1	239	Protein kinase.				activation of pro-apoptotic gene products|cellular response to mechanical stimulus|induction of apoptosis by intracellular signals|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of apoptosis|negative regulation of protein binding|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of deacetylase activity|regulation of protein localization|regulation of sequence-specific DNA binding transcription factor activity|response to UV|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|histone deacetylase binding|histone deacetylase regulator activity|JUN kinase activity|protein binding			central_nervous_system(3)|lung(2)|stomach(1)|ovary(1)|kidney(1)	8		Ovarian(717;0.0221)|Lung SC(717;0.113)|all_neural(218;0.116)		Epithelial(53;3.46e-65)|Lung(62;0.125)		TAAAGTTATTGAACAGCTTGG	0.318													3	39					0	0	0	0
CSTF2T	23283	broad.mit.edu	37	10	53458085	53458085	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:53458085C>A	uc001jjp.2	-	1	1271	c.1225G>T	c.(1225-1227)GGT>TGT	p.G409C	PRKG1_uc001jjm.2_Intron|PRKG1_uc001jjn.2_Intron|PRKG1_uc001jjo.2_Intron	NM_015235	NP_056050	Q9H0L4	CSTFT_HUMAN	cleavage stimulation factor, 3' pre-RNA, subunit	409	Gly-rich.				mRNA processing	nucleus	nucleotide binding|RNA binding			ovary(1)	1				COAD - Colon adenocarcinoma(2;0.00736)|Colorectal(2;0.00898)|all cancers(4;0.0188)|GBM - Glioblastoma multiforme(4;0.0778)|Epithelial(53;0.122)		CCACCTCTACCATCCATAGGT	0.522													25	115					2.12542e-12	4.93591e-12	1	0
CCDC6	8030	broad.mit.edu	37	10	61592413	61592413	+	Splice_Site	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:61592413T>A	uc001jks.3	-	3	1090	c.454_splice	c.e3-1	p.L152_splice		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6							cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		ATGCTGCAACTGGAAAATGAA	0.398													6	28					0	0	0	0
CCDC6	8030	broad.mit.edu	37	10	61666097	61666097	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:61666097G>C	uc001jks.3	-	1	722	c.86C>G	c.(85-87)TCG>TGG	p.S29W		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	29						cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		gccCGAGGTCGACGAGCAGGA	0.582													5	41					0	0	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687295	68687295	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:68687295C>G	uc001jmz.1	+	2	1171	c.621C>G	c.(619-621)CTC>CTG	p.L207L	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Silent_p.L207L	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	207	Extracellular (Potential).|LRR 7.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TGATCAGACTCAAAGAACTTC	0.458													10	120					0	0	0	0
HERC4	26091	broad.mit.edu	37	10	69785429	69785429	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:69785429C>A	uc001jng.3	-	8	1093	c.782G>T	c.(781-783)GGT>GTT	p.G261V	HERC4_uc001jnf.3_RNA|HERC4_uc001jnh.3_Missense_Mutation_p.G261V|HERC4_uc009xpr.2_Missense_Mutation_p.G261V|HERC4_uc001jni.3_Missense_Mutation_p.G5V|HERC4_uc001jnj.2_Missense_Mutation_p.G261V	NM_022079	NP_071362	Q5GLZ8	HERC4_HUMAN	hect domain and RLD 4 isoform a	261	RCC1 6.				cell differentiation|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	cytosol	ubiquitin-protein ligase activity			ovary(1)|breast(1)|skin(1)	3						AAACACTCCACCTTCCTAAAA	0.358													12	65					1.08611e-07	2.29492e-07	1	0
RUFY2	55680	broad.mit.edu	37	10	70164518	70164518	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:70164518G>C	uc001job.2	-	2	520	c.193C>G	c.(193-195)CTG>GTG	p.L65V	RUFY2_uc001jnz.1_RNA|RUFY2_uc001joc.2_Missense_Mutation_p.L30V|RUFY2_uc010qiw.1_Intron|RUFY2_uc001jod.1_Missense_Mutation_p.L30V|RUFY2_uc009xpv.1_5'UTR|RUFY2_uc001joe.1_Missense_Mutation_p.L30V	NM_017987	NP_060457	Q8WXA3	RUFY2_HUMAN	RUN and FYVE domain-containing 2 isoform a	79						nucleus	metal ion binding			ovary(1)	1						CCAAAGCTCAGAGCAGATTCA	0.428													8	38					0	0	0	0
ANXA7	310	broad.mit.edu	37	10	75156946	75156946	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:75156946C>A	uc001jtz.2	-	4	419	c.346G>T	c.(346-348)GGT>TGT	p.G116C	ANXA7_uc001jua.2_Missense_Mutation_p.G116C|ANXA7_uc001jub.2_Missense_Mutation_p.G76C|ANXA7_uc010qki.1_Intron|ANXA7_uc009xre.2_Missense_Mutation_p.G45C|ANXA7_uc009xrf.1_Intron	NM_004034	NP_004025	P20073	ANXA7_HUMAN	annexin VII isoform 2	116	Repeat-rich region.						calcium ion binding|calcium-dependent phospholipid binding|calcium-dependent protein binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					TGTGCTGGACCACCTCCATAA	0.463													6	25					0.00307968	0.00575353	1	0
Unknown	0	broad.mit.edu	37	10	79540984	79540984	+	RNA	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:79540984C>A	uc001jzb.2	+	1		c.2C>A			uc001jze.1_5'Flank|uc010qll.1_5'Flank|uc001jzf.1_5'Flank|uc001jzg.2_5'Flank|uc010qlm.1_5'Flank|uc001jzh.2_5'Flank					DQ576882																		GCCACCAGCTCATCGCGATCA	0.542													7	105					5.18039e-06	1.05407e-05	1	0
POLR3A	11128	broad.mit.edu	37	10	79784811	79784811	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:79784811G>A	uc001jzn.2	-	4	502	c.408C>T	c.(406-408)TAC>TAT	p.Y136Y		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	136					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			GCTTCTGAAGGTAGGTCAGGC	0.463													18	83					0	0	0	0
LRIT1	26103	broad.mit.edu	37	10	85991723	85991723	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:85991723C>G	uc001kcz.1	-	4	1854	c.1832G>C	c.(1831-1833)GGA>GCA	p.G611A		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	611	Cytoplasmic (Potential).					integral to endoplasmic reticulum membrane					0						CCCTTTGACTCCAAAGGCCTG	0.577													5	23					0	0	0	0
C10orf12	26148	broad.mit.edu	37	10	98741788	98741788	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:98741788A>T	uc001kmv.2	+	1	748	c.641A>T	c.(640-642)CAC>CTC	p.H214L	C10orf12_uc009xvg.1_Missense_Mutation_p.H524L	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	214										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AGAAATTTACACTCCCAGGAA	0.458													20	94					0	0	0	0
DUSP5	1847	broad.mit.edu	37	10	112269778	112269778	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:112269778A>T	uc001kzd.2	+	4	1004	c.749A>T	c.(748-750)GAC>GTC	p.D250V		NM_004419	NP_004410	Q16690	DUS5_HUMAN	dual specificity phosphatase 5	250	Tyrosine-protein phosphatase.				endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1		Breast(234;0.0848)		Epithelial(162;0.000276)|all cancers(201;0.00465)|BRCA - Breast invasive adenocarcinoma(275;0.12)		TTCCTTCCAGACTGTGTCAGG	0.483													8	68					0	0	0	0
TRUB1	142940	broad.mit.edu	37	10	116698023	116698023	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:116698023C>G	uc001lcd.2	+	1	72	c.11C>G	c.(10-12)TCT>TGT	p.S4C	TRUB1_uc010qsl.1_Intron	NM_139169	NP_631908	Q8WWH5	TRUB1_HUMAN	TruB pseudouridine (psi) synthase homolog 1	4					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding				0		Colorectal(252;0.09)|Breast(234;0.174)|Lung NSC(174;0.245)		Epithelial(162;0.00879)|all cancers(201;0.0243)		ATGGCCGCTTCTGAGGCGGCG	0.572													5	51					0	0	0	0
ATRNL1	26033	broad.mit.edu	37	10	116853721	116853721	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:116853721C>A	uc001lcg.2	+	1	598	c.212C>A	c.(211-213)TCG>TAG	p.S71*	ATRNL1_uc001lce.2_Intron|ATRNL1_uc001lcf.2_Nonsense_Mutation_p.S71*|ATRNL1_uc009xyq.2_Nonsense_Mutation_p.S71*	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	71	EGF-like 1.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TCCTGCTTCTCGGGCCGCTGT	0.662													7	20					0.00198382	0.003734	1	0
PNLIPRP3	119548	broad.mit.edu	37	10	118196325	118196325	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:118196325A>T	uc001lcl.3	+	2	253	c.152A>T	c.(151-153)AAG>ATG	p.K51M		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	51					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		TCTCCAGAGAAGATAAACACT	0.403													13	82					0	0	0	0
EIF3A	8661	broad.mit.edu	37	10	120809438	120809438	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:120809438G>A	uc001ldu.2	-	17	2679	c.2533C>T	c.(2533-2535)CAG>TAG	p.Q845*	EIF3A_uc010qsu.1_Nonsense_Mutation_p.Q811*|EIF3A_uc009xzg.1_5'UTR	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	845	Glu-rich.				formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		ACCCGCTCCTGATACTCTCGT	0.493													11	176					0	0	0	0
C10orf119	79892	broad.mit.edu	37	10	121618670	121618670	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:121618670G>T	uc001ler.2	-	3	466	c.168C>A	c.(166-168)CCC>CCA	p.P56P	C10orf119_uc001les.1_5'UTR	NM_024834	NP_079110	Q9BTE3	MCMBP_HUMAN	chromosome 10 open reading frame 119	56					cell division|DNA-dependent DNA replication|mitosis|S phase of mitotic cell cycle|sister chromatid cohesion	nucleus	chromatin binding				0		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.0044)		AATAATGAAGGGGAACTTCGT	0.328													11	29					6.40141e-05	0.000126162	1	0
SEC23IP	11196	broad.mit.edu	37	10	121689212	121689212	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:121689212G>C	uc001leu.1	+	14	2479	c.2407G>C	c.(2407-2409)GAT>CAT	p.D803H	SEC23IP_uc010qtc.1_Missense_Mutation_p.D592H|SEC23IP_uc009xzk.1_RNA	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	803	DDHD.				Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		TCGAGGAGTTGATAGGATAGA	0.353													4	115					0	0	0	0
DOCK1	1793	broad.mit.edu	37	10	129179577	129179577	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:129179577G>C	uc001ljt.2	+	37	3753	c.3689G>C	c.(3688-3690)TGT>TCT	p.C1230S	DOCK1_uc010qun.1_Missense_Mutation_p.C1251S|DOCK1_uc009yaq.2_Missense_Mutation_p.C225S	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1230	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CACAAGGAGTGTGATAACTAC	0.373													40	78					0	0	0	0
MKI67	4288	broad.mit.edu	37	10	129906158	129906158	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:129906158G>C	uc001lke.2	-	13	4141	c.3946C>G	c.(3946-3948)CCA>GCA	p.P1316A	MKI67_uc001lkf.2_Missense_Mutation_p.P956A|MKI67_uc009yav.1_Missense_Mutation_p.P891A|MKI67_uc009yaw.1_Missense_Mutation_p.P466A	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1316	16 X 122 AA approximate repeats.|3.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTCTGCACTGGAGTTCCCACA	0.507													23	275					0	0	0	0
LRRC56	115399	broad.mit.edu	37	11	549902	549902	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:549902G>T	uc010qvz.1	+	7	832	c.327G>T	c.(325-327)AGG>AGT	p.R109S		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	109	LRR 1.									skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCTTCTGCAGGGACTTGGGCA	0.627													12	31					7.03913e-09	1.52024e-08	1	0
EPS8L2	64787	broad.mit.edu	37	11	722485	722485	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:722485G>A	uc001lqt.2	+	13	1391	c.1144G>A	c.(1144-1146)GGC>AGC	p.G382S	EPS8L2_uc001lqu.2_Missense_Mutation_p.G382S|EPS8L2_uc010qwk.1_Missense_Mutation_p.G398S|EPS8L2_uc001lqv.2_Missense_Mutation_p.G337S|EPS8L2_uc001lqw.2_5'UTR|EPS8L2_uc001lqx.2_5'UTR|EPS8L2_uc001lqy.2_5'Flank	NM_022772	NP_073609	Q9H6S3	ES8L2_HUMAN	epidermal growth factor receptor pathway	382						cytoplasm				pancreas(1)	1		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.37e-27)|Epithelial(43;2.81e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-20)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTTCCTGCGCGGCCACCTGGT	0.662													9	31					0	0	0	0
Unknown	0	broad.mit.edu	37	11	5254027	5254027	+	IGR	SNP	A	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:5254027A>C								HBB (5726 upstream) : HBD (32 downstream)																							CTTCTTACACACCTGGACAAA	0.398													7	13					0	0	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5656091	5656091	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:5656091G>C	uc001mbf.2	+	10	2056	c.1812G>C	c.(1810-1812)CAG>CAC	p.Q604H	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Missense_Mutation_p.Q250H|TRIM34_uc009yeq.2_Missense_Mutation_p.Q5H|TRIM34_uc001mbi.2_Missense_Mutation_p.Q250H|TRIM34_uc001mbj.2_Missense_Mutation_p.Q250H	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	604						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		AGCTGCTGCAGGTAAGAAGGT	0.517													7	19					0	0	0	0
TRIM22	10346	broad.mit.edu	37	11	5717502	5717502	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:5717502A>T	uc001mbr.2	+	2	317	c.40A>T	c.(40-42)ACC>TCC	p.T14S	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Missense_Mutation_p.T14S|TRIM22_uc009yes.2_Missense_Mutation_p.T14S|TRIM22_uc010qzm.1_5'UTR|TRIM22_uc009yeu.2_5'UTR	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	14					immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		GAAGGAGGTGACCTGCCCCAT	0.507													16	46					0	0	0	0
OR56B4	196335	broad.mit.edu	37	11	6129218	6129218	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:6129218C>A	uc010qzx.1	+	1	210	c.210C>A	c.(208-210)GGC>GGA	p.G70G		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATTTGCTGGGCATATTAGCAG	0.502													11	34					3.86212e-05	7.65457e-05	1	0
SYT9	143425	broad.mit.edu	37	11	7437333	7437333	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:7437333C>A	uc001mfe.2	+	4	1342	c.1105C>A	c.(1105-1107)CTG>ATG	p.L369M	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	369	Cytoplasmic (Potential).|C2 2.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		GGCTGGCAGGCTGACCATTAC	0.433													22	46					1.10923e-09	2.45287e-09	1	0
ST5	6764	broad.mit.edu	37	11	8724239	8724239	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:8724239G>A	uc001mgt.2	-	14	2786	c.2600C>T	c.(2599-2601)TCA>TTA	p.S867L	ST5_uc009yfr.2_Missense_Mutation_p.S447L|ST5_uc001mgu.2_Missense_Mutation_p.S447L|ST5_uc001mgv.2_Missense_Mutation_p.S867L|ST5_uc010rbp.1_Missense_Mutation_p.S380L|ST5_uc009yfs.2_RNA	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	867	DENN.				positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		CTCCAGCCTTGAGTCCATGGG	0.622													9	50					0	0	0	0
SCUBE2	57758	broad.mit.edu	37	11	9090930	9090930	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:9090930C>T	uc001mhh.1	-	5	710	c.630G>A	c.(628-630)CAG>CAA	p.Q210Q	SCUBE2_uc001mhi.1_Silent_p.Q210Q|SCUBE2_uc001mhj.1_Silent_p.Q210Q	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	210	EGF-like 4 (Potential).					extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		TGCAGTCTCTCTGGTTCTTGG	0.577													20	67					0	0	0	0
KCNC1	3746	broad.mit.edu	37	11	17793800	17793800	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:17793800A>T	uc001mnk.3	+	2	1214	c.1159A>T	c.(1159-1161)ATC>TTC	p.I387F	KCNC1_uc009yhc.1_Missense_Mutation_p.I387F	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	387						voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						CTTTAAGAACATCCCCATCGG	0.612													24	57					0	0	0	0
Unknown	0	broad.mit.edu	37	11	31086167	31086167	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:31086167G>T	uc009yjk.1	-	8	853	c.784C>A	c.(784-786)CAA>AAA	p.Q262K	uc009yjl.1_Missense_Mutation_p.Q190K|DCDC1_uc001msu.1_Missense_Mutation_p.Q433K					RecName: Full=Doublecortin domain-containing protein 5;																		GCACTTTCTTGCAGAACCTAA	0.398													12	76					1.5842e-08	3.40884e-08	1	0
AMBRA1	55626	broad.mit.edu	37	11	46564192	46564192	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:46564192G>A	uc010rgu.1	-	7	1735	c.1375C>T	c.(1375-1377)CAG>TAG	p.Q459*	AMBRA1_uc010rgt.1_Nonsense_Mutation_p.Q25*|AMBRA1_uc009ylc.1_Nonsense_Mutation_p.Q459*|AMBRA1_uc001ncu.1_Nonsense_Mutation_p.Q369*|AMBRA1_uc001ncv.2_Nonsense_Mutation_p.Q369*|AMBRA1_uc001ncw.2_Nonsense_Mutation_p.Q369*|AMBRA1_uc001ncx.2_Nonsense_Mutation_p.Q459*	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	459					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		ACAGATGCCTGAGAGCCACCT	0.572													10	49					0	0	0	0
CKAP5	9793	broad.mit.edu	37	11	46772905	46772905	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:46772905T>C	uc001ndi.1	-	39	5423	c.5313A>G	c.(5311-5313)AAA>AAG	p.K1771K	CKAP5_uc009ylg.1_Silent_p.K1657K|CKAP5_uc001ndj.1_Silent_p.K1711K|CKAP5_uc001ndh.1_Silent_p.K700K	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	1771					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						CCTTGGGCCCTTTTAATTTGC	0.443													3	120					0	0	0	0
OR4C3	256144	broad.mit.edu	37	11	48346907	48346907	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:48346907C>T	uc010rhv.1	+	1	415	c.415C>T	c.(415-417)CTG>TTG	p.L139L		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGAGATCATTCTGCTCACAGT	0.488													31	139					0	0	0	0
OR4C11	219429	broad.mit.edu	37	11	55371370	55371370	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:55371370C>A	uc010rii.1	-	1	480	c.480G>T	c.(478-480)CTG>CTT	p.L160L		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATCTTAAGGCCAGGATAATCT	0.448													20	65					2.39187e-15	5.72876e-15	1	0
OR4S2	219431	broad.mit.edu	37	11	55419152	55419152	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:55419152G>T	uc001nhs.1	+	1	773	c.773G>T	c.(772-774)CGC>CTC	p.R258L		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	258	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				ATGTACATGCGCCCTGATACG	0.463													29	157					5.61819e-17	1.3567e-16	1	0
OR5D13	390142	broad.mit.edu	37	11	55541290	55541290	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:55541290T>G	uc010ril.1	+	1	377	c.377T>G	c.(376-378)GTG>GGG	p.V126G		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				GACCGTTTTGTGGCAGTTTGT	0.448													37	182					0	0	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735663	55735663	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:55735663A>T	uc010rit.1	-	1	277	c.277T>A	c.(277-279)TGT>AGT	p.C93S		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	93	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					AGAAAAAAACACATTTGTGTA	0.403													10	59					0	0	0	0
OR8H2	390151	broad.mit.edu	37	11	55873233	55873233	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:55873233T>A	uc010riy.1	+	1	715	c.715T>A	c.(715-717)TCT>ACT	p.S239T		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					GAAAGCTTTCTCTACTTGCGT	0.383										HNSCC(53;0.14)			19	65					0	0	0	0
OR5T2	219464	broad.mit.edu	37	11	56000129	56000129	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:56000129C>A	uc010rjc.1	-	1	533	c.533G>T	c.(532-534)AGA>ATA	p.R178I		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	178	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					CATGTAGACTCTGGGTGACAT	0.443													25	103					3.08376e-08	6.5952e-08	1	0
OR5T3	390154	broad.mit.edu	37	11	56019731	56019731	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:56019731T>A	uc010rjd.1	+	1	56	c.56T>A	c.(55-57)ATG>AAG	p.M19K		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					AAAACTGAAATGGACAAGTTG	0.368													5	37					0	0	0	0
OR5T3	390154	broad.mit.edu	37	11	56020312	56020312	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:56020312C>T	uc010rjd.1	+	1	637	c.637C>T	c.(637-639)CCT>TCT	p.P213S		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	213	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TGATATGCCTCCTCTCCTTGC	0.408													6	219					0	0	0	0
OR8K3	219473	broad.mit.edu	37	11	56086553	56086553	+	Missense_Mutation	SNP	G	T	T	rs150576458	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:56086553G>T	uc010rjf.1	+	1	771	c.771G>T	c.(769-771)ATG>ATT	p.M257I		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TGCTTTTCATGTACGTGCAGC	0.448													9	57					5.4927e-09	1.18918e-08	1	0
Unknown	0	broad.mit.edu	37	11	56143320	56143320	+	IGR	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:56143320C>T								OR8J1 (14649 upstream) : OR5R1 (41416 downstream)																							TTCTGTTACTCTTCTGTCATT	0.403													6	162					0	0	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57077033	57077033	+	Missense_Mutation	SNP	C	A	A	rs141886247	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:57077033C>A	uc001njr.2	-	5	3464	c.3152G>T	c.(3151-3153)AGT>ATT	p.S1051I	TNKS1BP1_uc001njs.2_Missense_Mutation_p.S1051I|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.S502I	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1051	Gly-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				GCTAGCATCACTGTTTTGCCA	0.637													24	56					9.86323e-18	2.38837e-17	1	0
OR9Q1	219956	broad.mit.edu	37	11	57947762	57947762	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:57947762C>A	uc001nmj.2	+	3	1162	c.846C>A	c.(844-846)CCC>CCA	p.P282P		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				AGGTCATCCCCATGTTGAATC	0.458													27	61					1.2476e-16	3.00861e-16	1	0
OR10Q1	219960	broad.mit.edu	37	11	57996165	57996165	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:57996165G>C	uc010rkd.1	-	1	183	c.183C>G	c.(181-183)ACC>ACG	p.T61T		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				AATACATCGGGGTGCGGAGGG	0.527													9	73					0	0	0	0
OR5A2	219981	broad.mit.edu	37	11	59190214	59190214	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:59190214G>T	uc010rkt.1	-	1	213	c.213C>A	c.(211-213)GAC>GAA	p.D71E		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATAGCAGATGTCCAGGAAGG	0.493													21	70					1.28384e-07	2.70622e-07	1	0
MS4A14	84689	broad.mit.edu	37	11	60170499	60170499	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:60170499G>C	uc001npj.2	+	4	998	c.433G>C	c.(433-435)GAA>CAA	p.E145Q	MS4A14_uc001npi.2_Missense_Mutation_p.E33Q|MS4A14_uc001npn.2_5'UTR|MS4A14_uc001npk.2_Missense_Mutation_p.E128Q|MS4A14_uc001npl.2_5'UTR|MS4A14_uc001npm.2_5'UTR	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	145	Helical; (Potential).					integral to membrane	receptor activity			breast(1)	1						GCCATCCTTTGAAGAAATATG	0.388													5	119					0	0	0	0
AHNAK	79026	broad.mit.edu	37	11	62293302	62293302	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:62293302C>T	uc001ntl.2	-	5	8887	c.8587G>A	c.(8587-8589)GAT>AAT	p.D2863N	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2863					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CCTTTCAGATCTCCCTCTACC	0.453													16	165					0	0	0	0
INTS5	80789	broad.mit.edu	37	11	62415040	62415040	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:62415040G>C	uc001nud.2	-	2	2565	c.2512C>G	c.(2512-2514)CGG>GGG	p.R838G	GANAB_uc001nua.2_5'Flank|GANAB_uc001nub.2_5'Flank|GANAB_uc001nuc.2_5'Flank|GANAB_uc010rma.1_5'Flank|GANAB_uc010rmb.1_5'Flank	NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	838					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						ACGGTGGCCCGGGCGTGTTCC	0.657													3	103					0	0	0	0
SNX32	254122	broad.mit.edu	37	11	65617935	65617935	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:65617935G>A	uc001ofr.2	+	5	535	c.408G>A	c.(406-408)GCG>GCA	p.A136A	SNX32_uc010rop.1_3'UTR	NM_152760	NP_689973	Q86XE0	SNX32_HUMAN	sorting nexin 6B	136	PX.				cell communication|protein transport		phosphatidylinositol binding				0				READ - Rectum adenocarcinoma(159;0.171)		AGACAGTTGCGATGCACGAAG	0.592													6	57					0	0	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793167	65793167	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:65793167C>A	uc001ogt.2	-	1	822	c.684G>T	c.(682-684)AGG>AGT	p.R228S		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	228	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						GATGACGGGACCTGCCATGGT	0.592													13	33					3.27435e-08	6.9943e-08	1	0
TCIRG1	10312	broad.mit.edu	37	11	67812468	67812468	+	Missense_Mutation	SNP	G	T	T	rs148627120	by1000genomes	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:67812468G>T	uc001one.2	+	10	1172	c.1064G>T	c.(1063-1065)CGG>CTG	p.R355L	TCIRG1_uc001ong.2_Missense_Mutation_p.R139L|TCIRG1_uc001onh.2_Missense_Mutation_p.R57L|TCIRG1_uc001oni.2_5'UTR	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	355	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						ATCCCCTGCCGGGACATGCCC	0.682													10	46					1.58986e-06	3.28435e-06	1	0
MYEOV	26579	broad.mit.edu	37	11	69063361	69063361	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:69063361G>T	uc001oov.2	+	3	894	c.444G>T	c.(442-444)GGG>GGT	p.G148G	MYEOV_uc001oox.2_Intron|MYEOV_uc009ysl.2_Silent_p.G148G|MYEOV_uc001oow.2_Silent_p.G90G	NM_138768	NP_620123	Q96EZ4	MYEOV_HUMAN	myeloma overexpressed	148											0	all_lung(4;2.21e-19)|Lung NSC(4;6.13e-19)|Melanoma(5;0.00128)		LUSC - Lung squamous cell carcinoma(11;3.33e-11)|STAD - Stomach adenocarcinoma(18;0.00654)|LUAD - Lung adenocarcinoma(13;0.0713)	Kidney(183;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(183;3.23e-08)|Lung(977;0.00361)|LUSC - Lung squamous cell carcinoma(976;0.0153)		GTGGCACTGGGAACAGGAATT	0.622													16	330					4.75885e-15	1.13515e-14	1	0
USP35	57558	broad.mit.edu	37	11	77909074	77909074	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:77909074G>T	uc009yva.1	+	3	1012	c.766G>T	c.(766-768)GAC>TAC	p.D256Y	USP35_uc001oze.2_Missense_Mutation_p.D12Y|USP35_uc001ozc.2_Intron|USP35_uc010rsp.1_Intron|USP35_uc001ozd.2_5'UTR|USP35_uc001ozf.2_5'Flank	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	256					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			CAGCAATGATGACAGTGTGAC	0.597													7	116					0.000274275	0.000530446	1	0
ODZ4	26011	broad.mit.edu	37	11	78413272	78413272	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:78413272G>T	uc001ozl.3	-	28	4849	c.4386C>A	c.(4384-4386)GCC>GCA	p.A1462A	ODZ4_uc009yvb.1_Silent_p.A46A	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1462	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TTGCGTGGATGGCCACCTTGC	0.552													11	32					2.80697e-09	6.14528e-09	1	0
CREBZF	58487	broad.mit.edu	37	11	85375815	85375815	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:85375815C>G	uc001pas.2	-	1	368	c.105G>C	c.(103-105)CTG>CTC	p.L35L	CREBZF_uc010rtc.1_RNA|CREBZF_uc010rtd.1_RNA	NM_001039618	NP_001034707	Q9NS37	ZHANG_HUMAN	HCF-binding transcription factor Zhangfei	35					negative regulation of gene expression, epigenetic|negative regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|response to virus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)				CAGCCCGGGTCAGGTCAGAGG	0.692													4	38					0	0	0	0
CTSC	1075	broad.mit.edu	37	11	88027277	88027277	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:88027277C>A	uc001pck.3	-	7	1390	c.1289G>T	c.(1288-1290)GGC>GTC	p.G430V	CTSC_uc001pcl.3_Missense_Mutation_p.G282V	NM_001814	NP_001805	P53634	CATC_HUMAN	cathepsin C isoform a preproprotein	430					immune response	lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CCAGCCGGTGCCCCAGCTGTT	0.507													10	63					3.07112e-06	6.27794e-06	1	0
TYR	7299	broad.mit.edu	37	11	88911881	88911881	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:88911881G>C	uc001pcs.2	+	1	842	c.760G>C	c.(760-762)GGT>CGT	p.G254R		NM_000372	NP_000363	P14679	TYRO_HUMAN	tyrosinase precursor	254	Lumenal, melanosome (Potential).				eye pigment biosynthetic process|melanin biosynthetic process from tyrosine|visual perception	Golgi-associated vesicle|integral to membrane|lysosome|melanosome membrane|perinuclear region of cytoplasm	copper ion binding|monophenol monooxygenase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.0033)			Azelaic Acid(DB00548)|Mimosine(DB01055)|NADH(DB00157)	GTACATGGGAGGTCAGCACCC	0.458									Oculocutaneous_Albinism				19	51					0	0	0	0
Unknown	0	broad.mit.edu	37	11	89774538	89774538	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:89774538C>A	uc010rua.1	+	7	1302	c.1179C>A	c.(1177-1179)ACC>ACA	p.T393T		NM_020358	NP_065091			ring finger protein 18																		GTCTCTTTACCACCTCCCCAC	0.418													12	68					5.03518e-11	1.13923e-10	1	0
FAT3	120114	broad.mit.edu	37	11	92523337	92523337	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:92523337G>T	uc001pdj.3	+	7	4581	c.4564G>T	c.(4564-4566)GAG>TAG	p.E1522*		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1522	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CTATACTGCCGAGAGGCTGGA	0.498										TCGA Ovarian(4;0.039)			53	142					9.86064e-34	2.45887e-33	1	0
CCDC67	159989	broad.mit.edu	37	11	93088643	93088643	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:93088643C>T	uc001pdq.2	+	3	236	c.136C>T	c.(136-138)CGA>TGA	p.R46*	CCDC67_uc001pdo.1_Nonsense_Mutation_p.R46*|CCDC67_uc001pdp.2_Nonsense_Mutation_p.R46*	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	46	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				TTTGGAGACACGATTAGATCT	0.388													16	48					0	0	0	0
HSPA8	3312	broad.mit.edu	37	11	122931384	122931384	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:122931384C>G	uc001pyo.2	-	3	406	c.328G>C	c.(328-330)GAG>CAG	p.E110Q	HSPA8_uc009zbc.2_5'Flank|HSPA8_uc001pyp.2_Missense_Mutation_p.E110Q|HSPA8_uc010rzu.1_Intron|HSPA8_uc009zbd.1_Missense_Mutation_p.E110Q|HSPA8_uc010rzv.1_Missense_Mutation_p.E110Q	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	110					cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CTTTTGGTCTCTCCCTTGTAT	0.453													8	78					0	0	0	0
OR8A1	390275	broad.mit.edu	37	11	124440565	124440565	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr11:124440565A>T	uc010san.1	+	1	601	c.601A>T	c.(601-603)ATG>TTG	p.M201L		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	201	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		CCTCCCTCTCATGAAGCTGTC	0.448													22	76					0	0	0	0
WNK1	65125	broad.mit.edu	37	12	994586	994586	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:994586G>C	uc001qio.3	+	19	5123	c.4616G>C	c.(4615-4617)GGA>GCA	p.G1539A	WNK1_uc001qip.3_Missense_Mutation_p.G1292A|WNK1_uc001qir.3_Missense_Mutation_p.G712A	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1539					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			AGTACAACTGGATTGGCTTTC	0.473													90	375					0	0	0	0
CACNA1C	775	broad.mit.edu	37	12	2602389	2602389	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:2602389C>T	uc009zdu.1	+	7	1263	c.950C>T	c.(949-951)GCG>GTG	p.A317V	CACNA1C_uc009zdv.1_Missense_Mutation_p.A314V|CACNA1C_uc001qkb.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkc.2_Missense_Mutation_p.A317V|CACNA1C_uc001qke.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkf.2_Missense_Mutation_p.A317V|CACNA1C_uc001qjz.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkd.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkg.2_Missense_Mutation_p.A317V|CACNA1C_uc009zdw.1_Missense_Mutation_p.A317V|CACNA1C_uc001qkh.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkl.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkn.2_Missense_Mutation_p.A317V|CACNA1C_uc001qko.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkp.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkr.2_Missense_Mutation_p.A317V|CACNA1C_uc001qku.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkq.2_Missense_Mutation_p.A317V|CACNA1C_uc001qks.2_Missense_Mutation_p.A317V|CACNA1C_uc001qkt.2_Missense_Mutation_p.A317V|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_Missense_Mutation_p.A53V|CACNA1C_uc001qkj.1_Missense_Mutation_p.A53V|CACNA1C_uc001qkk.1_Missense_Mutation_p.A53V|CACNA1C_uc001qkm.1_Missense_Mutation_p.A53V	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	317	I.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCCCCTTGTGCGCTGGAAACG	0.592													19	75					0	0	0	0
KCNA5	3741	broad.mit.edu	37	12	5154004	5154004	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:5154004G>A	uc001qni.2	+	1	920	c.691G>A	c.(691-693)GAG>AAG	p.E231K		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	231						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						GCCCCGCAACGAGTTCCAGCG	0.602													17	101					0	0	0	0
LEPREL2	10536	broad.mit.edu	37	12	6939088	6939088	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:6939088G>C	uc001qra.1	+	4	598	c.564G>C	c.(562-564)CTG>CTC	p.L188L	LEPREL2_uc001qqz.1_5'UTR|LEPREL2_uc001qrb.1_5'UTR|GPR162_uc001qqy.1_Silent_p.L123L	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	188					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CCATGCACCTGCAGATGCGGG	0.602													28	95					0	0	0	0
LEPREL2	10536	broad.mit.edu	37	12	6939090	6939090	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:6939090A>T	uc001qra.1	+	4	600	c.566A>T	c.(565-567)CAG>CTG	p.Q189L	LEPREL2_uc001qqz.1_5'UTR|LEPREL2_uc001qrb.1_5'UTR|GPR162_uc001qqy.1_Missense_Mutation_p.Q124L	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	189					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	ATGCACCTGCAGATGCGGGAG	0.602													25	91					0	0	0	0
ATN1	1822	broad.mit.edu	37	12	7047658	7047658	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:7047658G>C	uc001qrw.1	+	7	2769	c.2532G>C	c.(2530-2532)GAG>GAC	p.E844D	ATN1_uc001qrx.1_Missense_Mutation_p.E844D	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	844					cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						TGGCTCAGGAGGGCCGTGCTC	0.587											OREG0021641	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	31					0	0	0	0
C1S	716	broad.mit.edu	37	12	7177304	7177304	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:7177304G>T	uc001qsj.2	+	15	2135	c.1416G>T	c.(1414-1416)ACG>ACT	p.T472T	C1S_uc001qsk.2_Silent_p.T472T|C1S_uc001qsl.2_Silent_p.T472T|C1S_uc009zfr.2_Silent_p.T305T|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	472	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	GGGTGCTGACGGCTGCTCATG	0.517													8	35					0.000157383	0.000305386	1	0
C3AR1	719	broad.mit.edu	37	12	8211440	8211440	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:8211440G>A	uc001qtv.1	-	2	1434	c.1342C>T	c.(1342-1344)CAG>TAG	p.Q448*		NM_004054	NP_004045	Q16581	C3AR_HUMAN	complement component 3a receptor 1	448	Cytoplasmic (Potential).				blood circulation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response	integral to plasma membrane	C3a anaphylatoxin receptor activity|complement component C3a receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)	1				Kidney(36;0.0893)		TGAATGGACTGCCTTGCTTTC	0.458													17	80					0	0	0	0
C12orf69	440087	broad.mit.edu	37	12	14959575	14959575	+	Silent	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:14959575T>G	uc001rck.1	-	2	113	c.40A>C	c.(40-42)AGG>CGG	p.R14R	C12orf60_uc001rcj.3_Intron	NM_001013698	NP_001013720	A2RU48	CL069_HUMAN	hypothetical protein LOC440087	14						integral to membrane					0						TCTTCCCGCCTTTTTGGGTTC	0.378													4	139					0	0	0	0
ABCC9	10060	broad.mit.edu	37	12	21970162	21970162	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:21970162C>A	uc001rfi.1	-	31	3871	c.3851G>T	c.(3850-3852)AGT>ATT	p.S1284I	ABCC9_uc001rfh.2_Missense_Mutation_p.S1284I|ABCC9_uc001rfj.1_Missense_Mutation_p.S1248I	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1284	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGTCAGGAAACTGTTCACCTT	0.368													16	108					5.3912e-06	1.09316e-05	1	0
ABCC9	10060	broad.mit.edu	37	12	21970227	21970227	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:21970227C>A	uc001rfi.1	-	31	3806	c.3786G>T	c.(3784-3786)TTG>TTT	p.L1262F	ABCC9_uc001rfh.2_Missense_Mutation_p.L1262F|ABCC9_uc001rfj.1_Missense_Mutation_p.L1226F	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1262	Helical; Name=15; (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAACCCAATTCAAATAATTGG	0.378													11	65					3.86212e-05	7.65457e-05	1	0
PPFIBP1	8496	broad.mit.edu	37	12	27788028	27788028	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:27788028G>C	uc001ric.1	+	4	627	c.250G>C	c.(250-252)GAA>CAA	p.E84Q	PPFIBP1_uc001rhy.1_Missense_Mutation_p.E84Q|PPFIBP1_uc001rhz.1_Missense_Mutation_p.E84Q|PPFIBP1_uc010sjr.1_Intron|PPFIBP1_uc001rib.1_Missense_Mutation_p.E84Q|PPFIBP1_uc001ria.2_Missense_Mutation_p.E84Q|PPFIBP1_uc001rid.1_Intron	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	84					cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					AACGCTTGTTGAATGGCTTCA	0.408													17	59					0	0	0	0
BICD1	636	broad.mit.edu	37	12	32260340	32260340	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:32260340G>C	uc001rku.2	+	1	156	c.75G>C	c.(73-75)ACG>ACC	p.T25T	BICD1_uc001rkv.2_Silent_p.T25T|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	25	Potential.				anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			AGGAGCTCACGGAGACCACCC	0.572													6	15					0	0	0	0
FGD4	121512	broad.mit.edu	37	12	32793299	32793299	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:32793299G>T	uc001rkz.2	+	17	2610	c.2133G>T	c.(2131-2133)CTG>CTT	p.L711L	FGD4_uc001rlc.2_Silent_p.L796L|FGD4_uc001rla.2_Silent_p.L367L|FGD4_uc010ske.1_Silent_p.L823L|FGD4_uc001rlb.1_RNA	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	711	PH 2.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					GTTTCAAACTGACCCAGTCTA	0.517													19	95					5.35267e-07	1.1189e-06	1	0
LRRK2	120892	broad.mit.edu	37	12	40697896	40697896	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:40697896G>C	uc001rmg.3	+	27	3858	c.3737G>C	c.(3736-3738)AGA>ACA	p.R1246T	LRRK2_uc001rmh.1_Missense_Mutation_p.R868T|LRRK2_uc009zjw.2_Missense_Mutation_p.R84T|LRRK2_uc001rmi.2_Missense_Mutation_p.R79T	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1246	LRR 11.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				TTATGGTCTAGAGTAGAGAAA	0.343													4	42					0	0	0	0
CNTN1	1272	broad.mit.edu	37	12	41327310	41327310	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:41327310G>A	uc001rmm.1	+	8	864	c.751G>A	c.(751-753)GTA>ATA	p.V251I	CNTN1_uc009zjy.1_Missense_Mutation_p.V251I|CNTN1_uc001rmn.1_Missense_Mutation_p.V240I|CNTN1_uc001rmo.2_Missense_Mutation_p.V251I	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	251	Ig-like C2-type 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GTTCAAGGATGTATATGCATT	0.299													25	73					0	0	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43862412	43862412	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:43862412A>G	uc010skx.1	-	8	1214	c.1214T>C	c.(1213-1215)CTT>CCT	p.L405P		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	405	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CGTGTGCCCAAGCTCATGGGC	0.363													15	38					0	0	0	0
MLL2	8085	broad.mit.edu	37	12	49434307	49434307	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:49434307G>A	uc001rta.3	-	31	7246	c.7246C>T	c.(7246-7248)CAG>TAG	p.Q2416*		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2416	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GACTGGGACTGAGGACTGGCA	0.647			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			5	33					0	0	0	0
POU6F1	5463	broad.mit.edu	37	12	51584173	51584173	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:51584173T>A	uc001rxy.2	-	5	955	c.763A>T	c.(763-765)AAG>TAG	p.K255*	POU6F1_uc001rxz.2_Nonsense_Mutation_p.K255*|POU6F1_uc001rya.2_Nonsense_Mutation_p.K255*	NM_002702	NP_002693	Q14863	PO6F1_HUMAN	POU class 6 homeobox 1	255	Homeobox.				brain development|heart development|muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGTGGGTTCTTCTCAAAATAG	0.567													24	115					0	0	0	0
SCN8A	6334	broad.mit.edu	37	12	52200604	52200604	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:52200604C>G	uc001ryw.2	+	27	5512	c.5334C>G	c.(5332-5334)GAC>GAG	p.D1778E		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1778	IV.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	AAAGTGCAGACCCTCTGAGTG	0.463													15	134					0	0	0	0
Unknown	0	broad.mit.edu	37	12	52501166	52501166	+	RNA	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:52501166C>T	uc009zme.1	+	3		c.565C>T								Homo sapiens olfactory receptor, family 7, subfamily E, member 47 pseudogene, mRNA (cDNA clone IMAGE:5590288).																		CTCCTAGAACCTCAGAGGATC	0.498													3	6					0	0	0	0
KRT4	3851	broad.mit.edu	37	12	53202496	53202496	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:53202496C>G	uc001saz.2	-	5	1466	c.1195G>C	c.(1195-1197)GAG>CAG	p.E399Q		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	325						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GCTTCAGCCTCAGCCTTGCTC	0.572													7	68					0	0	0	0
HOXC11	3227	broad.mit.edu	37	12	54367536	54367536	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:54367536T>G	uc001sem.2	+	1	627	c.511T>G	c.(511-513)TGC>GGC	p.C171G		NM_014212	NP_055027	O43248	HXC11_HUMAN	homeobox C11	171					endoderm development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CGAGCCCCCCTGCTCCGGCAA	0.711			T	NUP98	AML								6	38					0	0	0	0
ITGA7	3679	broad.mit.edu	37	12	56094761	56094761	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:56094761G>A	uc001shh.2	-	4	812	c.592C>T	c.(592-594)CAG>TAG	p.Q198*	ITGA7_uc001shg.2_Nonsense_Mutation_p.Q198*|ITGA7_uc010sps.1_Nonsense_Mutation_p.Q101*|ITGA7_uc009znx.2_Nonsense_Mutation_p.Q85*	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	198	FG-GAP 3.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GTGCCCTGCTGGCAGAACCCA	0.592													4	34					0	0	0	0
INHBC	3626	broad.mit.edu	37	12	57843393	57843393	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:57843393C>T	uc001snv.1	+	2	774	c.647C>T	c.(646-648)GCC>GTC	p.A216V		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	216					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						GGTGGAGCTGCCCATAGGCCT	0.622													13	47					0	0	0	0
DCTN2	10540	broad.mit.edu	37	12	57929539	57929539	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:57929539C>T	uc001som.1	-	3	327	c.195G>A	c.(193-195)AAG>AAA	p.K65K	DCTN2_uc009zpu.1_Silent_p.K70K|DCTN2_uc009zpv.1_5'UTR|DCTN2_uc009zpw.1_5'UTR|DCTN2_uc001soo.1_RNA|DCTN2_uc001son.1_5'UTR|DCTN2_uc001sop.1_5'UTR|DCTN2_uc001soq.1_RNA|DCTN2_uc009zpx.1_Silent_p.K65K	NM_006400	NP_006391	Q13561	DCTN2_HUMAN	dynactin 2	65					cell proliferation|G2/M transition of mitotic cell cycle|mitosis	centrosome|cytosol|dynactin complex|dynein complex|kinetochore|membrane|microtubule|vesicle	motor activity|protein binding			ovary(1)	1						CACCAAGTCCCTTTGTCCCCA	0.498													4	23					0	0	0	0
AVPR1A	552	broad.mit.edu	37	12	63543842	63543842	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:63543842C>A	uc001sro.1	-	1	2749	c.775G>T	c.(775-777)GCA>TCA	p.A259S		NM_000706	NP_000697	P37288	V1AR_HUMAN	arginine vasopressin receptor 1A	259	Cytoplasmic (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration|generation of precursor metabolites and energy	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity				0			BRCA - Breast invasive adenocarcinoma(9;0.193)	GBM - Glioblastoma multiforme(28;0.0569)	Conivaptan(DB00872)|Desmopressin(DB00035)|Felypressin(DB00093)|Terlipressin(DB02638)|Vasopressin(DB00067)	GCTTGCTCTGCACCCTTGCTC	0.612													23	96					1.96895e-08	4.22639e-08	1	0
CPM	1368	broad.mit.edu	37	12	69265656	69265656	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:69265656C>G	uc001sup.2	-	4	400	c.339G>C	c.(337-339)CTG>CTC	p.L113L	CPM_uc001sur.2_Silent_p.L113L|CPM_uc001suq.2_Silent_p.L113L	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	113					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			TACTATTGATCAGATTTGTGA	0.443													14	83					0	0	0	0
BEST3	144453	broad.mit.edu	37	12	70049561	70049561	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:70049561C>T	uc001svg.2	-	10	1360	c.1133G>A	c.(1132-1134)TGG>TAG	p.W378*	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Nonsense_Mutation_p.W165*|BEST3_uc010stm.1_Nonsense_Mutation_p.W272*	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	378	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			ATCCCACAGCCACTCCTCGTC	0.552													30	90					0	0	0	0
PTPRB	5787	broad.mit.edu	37	12	70954649	70954649	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:70954649A>T	uc001swb.3	-	15	3610	c.3580T>A	c.(3580-3582)TGG>AGG	p.W1194R	PTPRB_uc010sto.1_Missense_Mutation_p.W1104R|PTPRB_uc010stp.1_Missense_Mutation_p.W1104R|PTPRB_uc001swc.3_Missense_Mutation_p.W1412R|PTPRB_uc001swa.3_Missense_Mutation_p.W1324R|PTPRB_uc001swd.3_Missense_Mutation_p.W1411R|PTPRB_uc009zrr.1_Missense_Mutation_p.W1291R	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1194	Fibronectin type-III 14.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GCTGGACTCCAGTTGAACCAA	0.458													16	88					0	0	0	0
KRR1	11103	broad.mit.edu	37	12	75895584	75895584	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:75895584C>T	uc001sxt.2	-	9	963	c.922G>A	c.(922-924)GAA>AAA	p.E308K	GLIPR1_uc001sxs.2_3'UTR|KRR1_uc009zsc.2_Missense_Mutation_p.E251K	NM_007043	NP_008974	Q13601	KRR1_HUMAN	HIV-1 rev binding protein 2	308	Lys-rich.				rRNA processing	nucleolus|ribonucleoprotein complex	RNA binding			ovary(1)|pancreas(1)	2						CTGATGGCTTCTGCTTGTTTA	0.284													6	29					0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78562546	78562546	+	Silent	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:78562546T>A	uc001syp.2	+	24	5054	c.4881T>A	c.(4879-4881)CTT>CTA	p.L1627L	NAV3_uc001syo.2_Silent_p.L1627L|NAV3_uc010sub.1_Silent_p.L1113L|NAV3_uc009zsf.2_Silent_p.L458L	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1627	Potential.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AATCTGAACTTATAGAACTAA	0.408										HNSCC(70;0.22)			24	93					0	0	0	0
PPFIA2	8499	broad.mit.edu	37	12	81768487	81768487	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:81768487G>T	uc001szo.1	-	11	1353	c.1192C>A	c.(1192-1194)CAG>AAG	p.Q398K	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	324										ovary(3)|lung(2)|pancreas(1)	6						CTCATGGTCTGCTGCAACTTT	0.458													24	58					2.21704e-12	5.12835e-12	1	0
MGAT4C	25834	broad.mit.edu	37	12	86373115	86373115	+	Silent	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:86373115T>G	uc001tai.3	-	8	2639	c.1389A>C	c.(1387-1389)ACA>ACC	p.T463T	MGAT4C_uc001tal.3_Silent_p.T463T|MGAT4C_uc001taj.3_Silent_p.T463T|MGAT4C_uc001tak.3_Silent_p.T463T|MGAT4C_uc010sum.1_Silent_p.T487T|MGAT4C_uc001tah.3_Silent_p.T463T	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	463	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						ATTCCTTTTGTGTTTTGGTGA	0.323													6	28					0	0	0	0
EEA1	8411	broad.mit.edu	37	12	93170693	93170693	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:93170693C>G	uc001tck.2	-	28	4305	c.4040G>C	c.(4039-4041)AGA>ACA	p.R1347T		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	1347	Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						GGCCCACTTTCTATTCAACGC	0.333													8	109					0	0	0	0
PLXNC1	10154	broad.mit.edu	37	12	94694716	94694716	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:94694716G>A	uc001tdc.2	+	28	4518	c.4269G>A	c.(4267-4269)CTG>CTA	p.L1423L	PLXNC1_uc010sut.1_Silent_p.L470L|PLXNC1_uc009zsv.2_Silent_p.L162L	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1423	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TAAACATCCTGAAGAACCCTC	0.423													14	52					0	0	0	0
IKBIP	121457	broad.mit.edu	37	12	99007959	99007959	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:99007959C>G	uc001tfv.2	-	3	567	c.457G>C	c.(457-459)GAC>CAC	p.D153H	IKBIP_uc001tfw.2_3'UTR	NM_201612	NP_963906	Q70UQ0	IKIP_HUMAN	IKK interacting protein isoform 2	153					induction of apoptosis|response to X-ray	endoplasmic reticulum membrane|integral to membrane	protein binding				0						TTTGTAATGTCTTGAGAAAGC	0.363													18	55					0	0	0	0
GAS2L3	283431	broad.mit.edu	37	12	101017491	101017491	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:101017491G>T	uc001thu.2	+	10	1134	c.908G>T	c.(907-909)AGT>ATT	p.S303I	GAS2L3_uc009zty.2_Missense_Mutation_p.S303I|GAS2L3_uc001thv.2_Missense_Mutation_p.S199I	NM_174942	NP_777602	Q86XJ1	GA2L3_HUMAN	growth arrest-specific 2 like 3	303					cell cycle arrest					skin(1)	1						TCTAATGAAAGTGTACCTGAT	0.378													7	45					2.0095e-06	4.12217e-06	1	0
GAS2L3	283431	broad.mit.edu	37	12	101017768	101017768	+	Silent	SNP	G	C	C	rs61748062	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:101017768G>C	uc001thu.2	+	10	1411	c.1185G>C	c.(1183-1185)CCG>CCC	p.P395P	GAS2L3_uc009zty.2_Silent_p.P395P|GAS2L3_uc001thv.2_Silent_p.P291P	NM_174942	NP_777602	Q86XJ1	GA2L3_HUMAN	growth arrest-specific 2 like 3	395					cell cycle arrest					skin(1)	1						CGAAGAAACCGCAGGCTCCTT	0.418													28	87					0	0	0	0
C12orf42	374470	broad.mit.edu	37	12	103699898	103699898	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:103699898C>T	uc001tjt.2	-	5	573	c.485G>A	c.(484-486)TGG>TAG	p.W162*	C12orf42_uc001tjs.2_Intron|C12orf42_uc009zuf.1_Nonsense_Mutation_p.W162*|C12orf42_uc001tju.2_Nonsense_Mutation_p.W67*	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	162										ovary(1)|central_nervous_system(1)	2						TGAACTGTTCCAAGCCTGCTT	0.493													13	48					0	0	0	0
STAB2	55576	broad.mit.edu	37	12	103988252	103988252	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:103988252C>T	uc001tjw.2	+	3	481	c.295C>T	c.(295-297)CGG>TGG	p.R99W		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	99	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TCTCCAACCTCGGTGTTGTCC	0.493													21	100					0	0	0	0
HSP90B1	7184	broad.mit.edu	37	12	104335647	104335647	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:104335647A>T	uc001tkb.1	+	11	1451	c.1346A>T	c.(1345-1347)GAG>GTG	p.E449V	HSP90B1_uc010swg.1_Missense_Mutation_p.E114V|HSP90B1_uc009zui.1_Intron	NM_003299	NP_003290	P14625	ENPL_HUMAN	heat shock protein 90kDa beta, member 1	449					actin rod assembly|anti-apoptosis|cellular response to ATP|ER-associated protein catabolic process|protein folding|protein transport|regulation of phosphoprotein phosphatase activity|response to hypoxia|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|melanosome|microsome|midbody|perinuclear region of cytoplasm	ATP binding|calcium ion binding|low-density lipoprotein particle receptor binding|protein phosphatase binding|RNA binding|unfolded protein binding|virion binding			ovary(2)|skin(1)	3					Rifabutin(DB00615)	GTTTCCCGCGAGACTCTTCAG	0.453													18	58					0	0	0	0
CHST11	50515	broad.mit.edu	37	12	105151344	105151344	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:105151344C>G	uc001tkx.1	+	4	1113	c.822C>G	c.(820-822)GAC>GAG	p.D274E	CHST11_uc001tky.2_Missense_Mutation_p.D269E|uc001tkz.2_5'Flank	NM_018413	NP_060883	Q9NPF2	CHSTB_HUMAN	carbohydrate sulfotransferase 11	274	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity				0						TCCACTATGACCTCGTGGGCA	0.547													3	29					0	0	0	0
ALDH2	217	broad.mit.edu	37	12	112229161	112229161	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:112229161G>T	uc001tst.2	+	7	1174	c.733G>T	c.(733-735)GCT>TCT	p.A245S	ALDH2_uc010syi.1_Missense_Mutation_p.A198S|ALDH2_uc009zvy.2_Intron	NM_000690	NP_000681	P05091	ALDH2_HUMAN	mitochondrial aldehyde dehydrogenase 2	245					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase|electron carrier activity			skin(2)|ovary(1)|central_nervous_system(1)	4					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	TGGCCCCACGGCTGGGGCCGC	0.587			T	HMGA2	leiomyoma								5	18					0.00307968	0.00575353	1	0
RPL6	6128	broad.mit.edu	37	12	112846080	112846080	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:112846080C>G	uc001ttu.2	-	3	529	c.300G>C	c.(298-300)AAG>AAC	p.K100N	RPL6_uc001ttv.2_Missense_Mutation_p.K100N|RPL6_uc009zwd.1_3'UTR	NM_001024662	NP_001019833	Q02878	RL6_HUMAN	ribosomal protein L6	100			K -> Q (in a colorectal cancer sample; somatic mutation).		endocrine pancreas development|regulation of transcription, DNA-dependent|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	DNA binding|RNA binding|structural constituent of ribosome	p.K100Q(1)		large_intestine(1)	1						TACCGCCGTTCTTGTCACCAC	0.413													10	74					0	0	0	0
DDX54	79039	broad.mit.edu	37	12	113614713	113614713	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:113614713C>A	uc001tup.2	-	7	712	c.684G>T	c.(682-684)GTG>GTT	p.V228V	DDX54_uc001tuq.3_Silent_p.V228V	NM_024072	NP_076977	Q8TDD1	DDX54_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	228	Helicase ATP-binding.				estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nucleolus	ATP binding|ATP-dependent RNA helicase activity|estrogen receptor binding|RNA binding|transcription corepressor activity			skin(2)|central_nervous_system(1)	3						CAGCCACATGCACCAACCGTC	0.592													16	55					3.41278e-10	7.63317e-10	1	0
RBM19	9904	broad.mit.edu	37	12	114261089	114261089	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:114261089C>G	uc009zwi.2	-	24	2967	c.2823G>C	c.(2821-2823)GAG>GAC	p.E941D	RBM19_uc001tvn.3_Missense_Mutation_p.E941D|RBM19_uc001tvm.2_Missense_Mutation_p.E941D	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	941					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GCTCCAGGATCTCGTCCAACA	0.607													3	29					0	0	0	0
TBX5	6910	broad.mit.edu	37	12	114839711	114839711	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:114839711G>C	uc001tvo.2	-	3	657	c.162C>G	c.(160-162)ATC>ATG	p.I54M	TBX5_uc001tvp.2_Missense_Mutation_p.I54M|TBX5_uc001tvq.2_Missense_Mutation_p.I4M|TBX5_uc010syv.1_Missense_Mutation_p.I54M	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	54			I -> T (in HOS).		cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		GAAACACTTTGATTCCCTCCA	0.473													6	41					0	0	0	0
CIT	11113	broad.mit.edu	37	12	120135524	120135524	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:120135524T>A	uc001txi.1	-	45	5749	c.5696A>T	c.(5695-5697)AAG>ATG	p.K1899M	CIT_uc001txh.1_Missense_Mutation_p.K1418M|CIT_uc001txj.1_Missense_Mutation_p.K1941M	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1899					intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		GAGGTTTCCCTTGCAGCAAAT	0.582													24	84					0	0	0	0
ATP6V0A2	23545	broad.mit.edu	37	12	124221632	124221632	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:124221632G>A	uc001ufr.2	+	9	1100	c.852G>A	c.(850-852)TTG>TTA	p.L284L	ATP6V0A2_uc001ufq.1_Silent_p.L284L	NM_012463	NP_036595	Q9Y487	VPP2_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	284	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|immune response|insulin receptor signaling pathway|transferrin transport	endosome membrane|integral to membrane|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000224)|Epithelial(86;0.000625)|all cancers(50;0.00775)		AGGACTATTTGAGGCAAGTGC	0.507													11	109					0	0	0	0
SLC15A4	121260	broad.mit.edu	37	12	129283841	129283841	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:129283841G>C	uc001uhu.2	-	7	1589	c.1536C>G	c.(1534-1536)ATC>ATG	p.I512M	SLC15A4_uc001uhv.2_RNA	NM_145648	NP_663623	Q8N697	S15A4_HUMAN	solute carrier family 15, member 4	512					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.69e-06)|Epithelial(86;1.17e-05)|all cancers(50;5.07e-05)		CGATGGCTTTGATAGACACCA	0.547													16	57					0	0	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558977	129558977	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:129558977C>G	uc009zyl.1	-	9	3071	c.2743G>C	c.(2743-2745)GAC>CAC	p.D915H	TMEM132D_uc001uia.2_Missense_Mutation_p.D453H	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	915	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		ATTTCTAAGTCGCTCAGCCCT	0.488													10	52					0	0	0	0
RIMBP2	23504	broad.mit.edu	37	12	130912810	130912810	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:130912810C>A	uc001uil.2	-	12	2439	c.2275G>T	c.(2275-2277)GAG>TAG	p.E759*		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	759						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TCCTCGTCCTCCTCCATGATG	0.612													11	57					9.70103e-10	2.15062e-09	1	0
ANKLE2	23141	broad.mit.edu	37	12	133327233	133327233	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr12:133327233C>T	uc001ukx.2	-	3	910	c.843G>A	c.(841-843)TTG>TTA	p.L281L	ANKLE2_uc001uky.3_Silent_p.L219L	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	281						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		ATTTACCTTTCAACCTGTCAT	0.423													6	39					0	0	0	0
PABPC3	5042	broad.mit.edu	37	13	25671507	25671507	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:25671507G>A	uc001upy.2	+	1	1232	c.1171G>A	c.(1171-1173)GCT>ACT	p.A391T		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	391					mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		AAGTGTACGAGCTGTGCCCAA	0.507													21	99					0	0	0	0
ATP8A2	51761	broad.mit.edu	37	13	26402328	26402328	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:26402328G>T	uc001uqk.2	+	28	2894	c.2752G>T	c.(2752-2754)GTG>TTG	p.V918L	ATP8A2_uc010tdi.1_Intron|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Missense_Mutation_p.V468L	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	878	Helical; (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		CCTGTACAATGTGGTAAGCAT	0.398													26	127					1.33986e-20	3.28061e-20	1	0
FLT3	2322	broad.mit.edu	37	13	28624246	28624246	+	Missense_Mutation	SNP	C	A	A	rs61729144	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:28624246C>A	uc001urw.2	-	6	810	c.728G>T	c.(727-729)AGG>ATG	p.R243M	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.R243M	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	243	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TGTGAACAGCCTGGTGCATTC	0.428			Mis|O		AML|ALL								21	101					4.35082e-09	9.50153e-09	1	0
FRY	10129	broad.mit.edu	37	13	32813472	32813472	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:32813472G>A	uc001utx.2	+	45	6998	c.6502G>A	c.(6502-6504)GAA>AAA	p.E2168K	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2168					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GGATATAGCCGAAAGGATTGC	0.463													6	58					0	0	0	0
PDS5B	23047	broad.mit.edu	37	13	33271024	33271024	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:33271024G>T	uc010abf.2	+	15	1743	c.1585G>T	c.(1585-1587)GTG>TTG	p.V529L	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	529					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		ATTTTCAAAAGTGATGGTTAT	0.259													18	54					2.21704e-12	5.12835e-12	1	0
SOHLH2	54937	broad.mit.edu	37	13	36744767	36744767	+	Silent	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:36744767T>G	uc001uvj.2	-	10	1247	c.1158A>C	c.(1156-1158)TCA>TCC	p.S386S	SOHLH2_uc010tei.1_Silent_p.S463S	NM_017826	NP_060296	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic	386					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;4.63e-08)|Epithelial(112;2.67e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00272)|BRCA - Breast invasive adenocarcinoma(63;0.00685)|GBM - Glioblastoma multiforme(144;0.0273)		GTAAATGAATTGAAATGTTCT	0.493													7	63					0	0	0	0
C13orf36	400120	broad.mit.edu	37	13	37269082	37269082	+	Translation_Start_Site	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:37269082A>T	uc001uvt.3	+	2	313	c.-133A>T	c.(-135--131)CAAGT>CATGT			NM_203451	NP_982276	A2A2V5	CM036_HUMAN	hypothetical protein LOC400120							integral to membrane				skin(1)	1						TTGAGAAACAAGTTTTGTTGT	0.363													6	11					0	0	0	0
FAM48A	55578	broad.mit.edu	37	13	37622712	37622712	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:37622712C>G	uc001uwg.2	-	3	276	c.28G>C	c.(28-30)GAT>CAT	p.D10H	FAM48A_uc010abt.2_Missense_Mutation_p.D10H|FAM48A_uc001uwh.2_Missense_Mutation_p.D10H|FAM48A_uc001uwi.2_Missense_Mutation_p.D10H|FAM48A_uc001uwj.2_Missense_Mutation_p.D10H|FAM48A_uc001uwk.2_Missense_Mutation_p.D10H|FAM48A_uc010tes.1_Intron|FAM48A_uc001uwl.1_Missense_Mutation_p.D10H	NM_001014286	NP_001014308	Q8NEM7	FA48A_HUMAN	family with sequence similarity 48, member A	10					autophagy|gastrulation	SAGA-type complex	protein binding				0		Lung NSC(96;2.09e-06)|Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.0959)		all cancers(112;6.06e-07)|Epithelial(112;1.87e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00794)|BRCA - Breast invasive adenocarcinoma(63;0.0128)|GBM - Glioblastoma multiforme(144;0.0477)		TCTGCACGATCCAAAGCTAGT	0.269													7	39					0	0	0	0
POSTN	10631	broad.mit.edu	37	13	38143521	38143521	+	Splice_Site	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:38143521C>T	uc001uwo.3	-	21	2466	c.2348_splice	c.e21-1	p.E783_splice	POSTN_uc010tet.1_Splice_Site_p.E284_splice|POSTN_uc001uwp.3_Splice_Site_p.E726_splice|POSTN_uc001uwr.2_Intron|POSTN_uc001uwq.2_Intron|POSTN_uc010teu.1_Splice_Site_p.E756_splice|POSTN_uc010tev.1_Splice_Site_p.E696_splice|POSTN_uc010tew.1_Intron	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1						cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TTGGTGACCTCTGAGAGGATA	0.348													9	48					0	0	0	0
ZC3H13	23091	broad.mit.edu	37	13	46542018	46542018	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:46542018C>T	uc010tfw.1	-	14	3948	c.3942G>A	c.(3940-3942)GAG>GAA	p.E1314E	ZC3H13_uc001vaq.2_5'UTR|ZC3H13_uc001vas.1_Silent_p.E1314E	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	1314	Potential.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		tatctctcctctctctctcgc	0.179													12	66					0	0	0	0
PCDH9	5101	broad.mit.edu	37	13	67801710	67801710	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:67801710C>T	uc001vik.2	-	2	1555	c.863G>A	c.(862-864)CGG>CAG	p.R288Q	PCDH9_uc001vil.2_Missense_Mutation_p.R288Q|PCDH9_uc010thl.1_Missense_Mutation_p.R288Q|PCDH9_uc001vin.3_Missense_Mutation_p.R288Q	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	288	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		AAAAATGTACCGGATTTCAGC	0.463													17	95					0	0	0	0
KLHL1	57626	broad.mit.edu	37	13	70456497	70456497	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:70456497C>A	uc001vip.2	-	5	1939	c.1145G>T	c.(1144-1146)TGG>TTG	p.W382L	KLHL1_uc010thm.1_Missense_Mutation_p.W321L	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	382					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		ATACTTGACCCACATCATCAA	0.453													10	45					0.000442599	0.000850371	1	0
SLITRK6	84189	broad.mit.edu	37	13	86369101	86369101	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:86369101C>A	uc001vll.1	-	2	2002	c.1543G>T	c.(1543-1545)GAG>TAG	p.E515*	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	515	Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		GGGTTATCCTCAAGGTCAATC	0.423													10	81					0.000673444	0.00128547	1	0
SLITRK5	26050	broad.mit.edu	37	13	88329558	88329558	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:88329558C>A	uc001vln.2	+	2	2134	c.1915C>A	c.(1915-1917)CCT>ACT	p.P639T	SLITRK5_uc010tic.1_Missense_Mutation_p.P398T	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	639	Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CGCCGTGACTCCTGCGGTCCG	0.622													12	66					7.03913e-09	1.52024e-08	1	0
NALCN	259232	broad.mit.edu	37	13	101944439	101944439	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:101944439A>G	uc001vox.1	-	9	1138	c.949T>C	c.(949-951)TTT>CTT	p.F317L	NALCN_uc001voy.2_Missense_Mutation_p.F32L|NALCN_uc001voz.2_Missense_Mutation_p.F317L|NALCN_uc001vpa.2_Missense_Mutation_p.F317L	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	317	Helical; Name=S6 of repeat I; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ACAGCAATAAACACGTTCTGA	0.403													5	14					0	0	0	0
TPP2	7174	broad.mit.edu	37	13	103282533	103282533	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:103282533C>G	uc001vpi.3	+	10	1335	c.1232C>G	c.(1231-1233)TCT>TGT	p.S411C		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	411					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ACTTGGTCTTCTAGAGGACCT	0.413													14	41					0	0	0	0
KDELC1	79070	broad.mit.edu	37	13	103443611	103443611	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:103443611C>A	uc001vpq.3	-	5	1226	c.842G>T	c.(841-843)GGC>GTC	p.G281V	KDELC1_uc001vpr.3_Missense_Mutation_p.G62V	NM_024089	NP_076994	Q6UW63	KDEL1_HUMAN	KDEL (Lys-Asp-Glu-Leu) containing 1 precursor	281						endoplasmic reticulum lumen				ovary(1)	1	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTCTCACCGGCCCATGGTTTC	0.453													60	259					1.83847e-13	4.30937e-13	1	0
TUBGCP3	10426	broad.mit.edu	37	13	113208415	113208415	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:113208415T>C	uc001vse.1	-	8	1109	c.922A>G	c.(922-924)ACG>GCG	p.T308A	TUBGCP3_uc010tjq.1_Missense_Mutation_p.T298A|TUBGCP3_uc001vsf.2_Missense_Mutation_p.T308A|TUBGCP3_uc001vsg.1_Missense_Mutation_p.T308A	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	308					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					CTCTGGTCCGTGTATCTTCTG	0.483													39	57					0	0	0	0
TOX4	9878	broad.mit.edu	37	14	21960898	21960898	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:21960898T>G	uc001waz.2	+	7	1226	c.1123T>G	c.(1123-1125)TTG>GTG	p.L375V	TOX4_uc001way.2_Missense_Mutation_p.L245V|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Missense_Mutation_p.L352V|TOX4_uc010tlv.1_Missense_Mutation_p.L245V	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	375						chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		CAAACAAATGTTGCCCTCTTC	0.493													6	124					0	0	0	0
AP1G2	8906	broad.mit.edu	37	14	24034829	24034829	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:24034829C>T	uc001wkl.2	-	7	1064	c.727G>A	c.(727-729)GAC>AAC	p.D243N	AP1G2_uc001wkj.2_5'UTR|AP1G2_uc001wkk.3_Missense_Mutation_p.D171N|AP1G2_uc001wkn.2_5'UTR|uc001wko.1_RNA|AP1G2_uc001wkp.1_5'Flank|AP1G2_uc010tnp.1_Missense_Mutation_p.D243N|AP1G2_uc010aks.2_Missense_Mutation_p.D171N|AP1G2_uc010akt.2_Missense_Mutation_p.D171N|AP1G2_uc010tnq.1_RNA	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	243					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		AGGAAGGGGTCGCTGACTCCA	0.557													9	22					0	0	0	0
TM9SF1	10548	broad.mit.edu	37	14	24659669	24659669	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:24659669C>G	uc001wnb.1	-	5	1692	c.1344G>C	c.(1342-1344)AAG>AAC	p.K448N	IPO4_uc001wmu.2_5'Flank|IPO4_uc001wmv.1_5'Flank|IPO4_uc001wmx.1_5'Flank|IPO4_uc001wmy.1_5'Flank|IPO4_uc010tnz.1_5'Flank|IPO4_uc001wmw.1_5'Flank|IPO4_uc001wmz.1_5'UTR|TM9SF1_uc010toa.1_Missense_Mutation_p.K361N|TM9SF1_uc001wna.1_RNA|TM9SF1_uc010tob.1_Missense_Mutation_p.K683N|TM9SF1_uc001wnc.2_Missense_Mutation_p.K448N	NM_006405	NP_006396	O15321	TM9S1_HUMAN	transmembrane 9 superfamily member 1 isoform a	448					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0183)		GGGCGATGTTCTTGGTGCGAC	0.547													19	58					0	0	0	0
PRKD1	5587	broad.mit.edu	37	14	30066890	30066890	+	Silent	SNP	G	A	A	rs147092748		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:30066890G>A	uc001wqh.2	-	16	2422	c.2241C>T	c.(2239-2241)CCC>CCT	p.P747P		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	747	Protein kinase.				cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		CCAGGTAAGCGGGGGTACCCA	0.488													22	38					0	0	0	0
NKX2-1	7080	broad.mit.edu	37	14	36988380	36988380	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:36988380G>A	uc001wtt.2	-	1	524	c.183C>T	c.(181-183)CAC>CAT	p.H61H	SFTA3_uc001wts.2_Intron|NKX2-1_uc001wtu.2_Silent_p.H91H|NKX2-1_uc001wtv.2_Silent_p.H61H|uc001wtw.1_5'Flank	NM_003317	NP_003308	P43699	NKX21_HUMAN	thyroid transcription factor 1 isoform 2	61				H -> P (in Ref. 5; BAA23527/BAA23529).	epithelial tube branching involved in lung morphogenesis|globus pallidus development|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|thyroid gland development		protein binding|transcription regulatory region DNA binding			skin(1)	1	all_cancers(3;4.47e-51)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.165)		Lung(8;1.8e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.014)|all cancers(34;0.0366)|LUSC - Lung squamous cell carcinoma(13;0.132)	GBM - Glioblastoma multiforme(112;0.0171)		TGACGGCGCCGTGGTGCCCCA	0.746			A		NSCLC								11	7					0	0	0	0
FANCM	57697	broad.mit.edu	37	14	45605509	45605509	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:45605509G>C	uc001wwd.3	+	1	374	c.275G>C	c.(274-276)CGG>CCG	p.R92P	FANCM_uc001wwc.2_Missense_Mutation_p.R92P|FANCM_uc010anf.2_Missense_Mutation_p.R92P|FKBP3_uc010tqf.1_5'Flank	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	92					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TGCCCAGTGCGGGACTACCAG	0.597								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				13	53					0	0	0	0
MGAT2	4247	broad.mit.edu	37	14	50088061	50088061	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:50088061G>A	uc001wwr.2	+	1	573	c.75G>A	c.(73-75)TGG>TGA	p.W25*	SDCCAG1_uc010anj.1_Intron|RPL36AL_uc001wwq.1_5'Flank	NM_002408	NP_002399	Q10469	MGAT2_HUMAN	mannosyl (alpha-1,6-)-glycoprotein	25	Helical; Signal-anchor for type II membrane protein; (Potential).				oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity				0	all_epithelial(31;0.0021)|Breast(41;0.0124)					TCGTCCTCTGGAGCAGCAATG	0.692													5	25					0	0	0	0
PYGL	5836	broad.mit.edu	37	14	51375033	51375033	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:51375033C>A	uc001wyu.2	-	19	2462	c.2335G>T	c.(2335-2337)GAA>TAA	p.E779*	PYGL_uc010tqq.1_Nonsense_Mutation_p.E745*|PYGL_uc001wyv.2_Nonsense_Mutation_p.E453*|PYGL_uc001wyt.2_RNA	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	779					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	ACATAGGCTTCGTAGTCTGCA	0.303													14	41					2.31682e-05	4.62838e-05	1	0
PYGL	5836	broad.mit.edu	37	14	51390809	51390809	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:51390809C>G	uc001wyu.2	-	5	665	c.538G>C	c.(538-540)GCA>CCA	p.A180P	PYGL_uc010tqq.1_Missense_Mutation_p.A146P|PYGL_uc001wyv.2_5'UTR|PYGL_uc010anz.1_5'UTR|PYGL_uc001wyw.3_Missense_Mutation_p.A180P	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	180					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	CAATCATCTGCTTCTTCTACC	0.383													8	50					0	0	0	0
BMP4	652	broad.mit.edu	37	14	54417231	54417231	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:54417231C>G	uc001xal.3	-	3	933	c.746G>C	c.(745-747)GGC>GCC	p.G249A	BMP4_uc010aoh.2_Missense_Mutation_p.G249A|BMP4_uc001xao.3_Missense_Mutation_p.G249A|BMP4_uc001xan.3_Missense_Mutation_p.G249A	NM_130851	NP_570912	P12644	BMP4_HUMAN	bone morphogenetic protein 4 preproprotein	249					activation of MAPKK activity|blood vessel endothelial cell proliferation involved in sprouting angiogenesis|BMP signaling pathway involved in heart induction|BMP signaling pathway involved in nephric duct formation|branching involved in ureteric bud morphogenesis|bronchus development|bud dilation involved in lung branching|cardiac septum development|cartilage development|endocardial cushion development|epithelial cell proliferation involved in lung morphogenesis|intermediate mesodermal cell differentiation|lung alveolus development|lymphoid progenitor cell differentiation|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway|negative regulation of branching involved in ureteric bud morphogenesis|negative regulation of cell proliferation involved in heart morphogenesis|negative regulation of glomerular mesangial cell proliferation|negative regulation of glomerulus development|negative regulation of immature T cell proliferation in thymus|negative regulation of MAP kinase activity|negative regulation of metanephric comma-shaped body morphogenesis|negative regulation of metanephric S-shaped body morphogenesis|negative regulation of mitosis|negative regulation of myoblast differentiation|negative regulation of phosphorylation|negative regulation of striated muscle tissue development|negative regulation of thymocyte apoptosis|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cardiac muscle fiber development|positive regulation of cartilage development|positive regulation of collagen biosynthetic process|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of kidney development|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|protein localization to nucleus|pulmonary artery endothelial tube morphogenesis|secondary heart field specification|SMAD protein signal transduction|specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway|steroid hormone mediated signaling pathway	extracellular space|proteinaceous extracellular matrix	BMP receptor binding|chemoattractant activity|cytokine activity|growth factor activity				0						GACATGCTGGCCCTGGTGGGT	0.617													23	67					0	0	0	0
C14orf149	112849	broad.mit.edu	37	14	59946014	59946014	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:59946014G>A	uc001xee.1	-	2	603	c.564C>T	c.(562-564)GGC>GGT	p.G188G	C14orf149_uc010trx.1_3'UTR	NM_144581	NP_653182	Q96EM0	PRCM_HUMAN	proline racemase-like	188							proline racemase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.14)	L-Proline(DB00172)	AAAATGCACCGCCATATGCAA	0.423													12	47					0	0	0	0
KCNH5	27133	broad.mit.edu	37	14	63511873	63511873	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:63511873G>A	uc001xfx.2	-	1	83	c.32C>T	c.(31-33)CCG>CTG	p.P11L	KCNH5_uc001xfy.2_Missense_Mutation_p.P11L|KCNH5_uc001xfz.1_Intron|KCNH5_uc001xga.2_Intron	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	11	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TGTGTTCTGCGGTGCCACCAG	0.517													7	61					0	0	0	0
PPP2R5E	5529	broad.mit.edu	37	14	64006301	64006301	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:64006301G>C	uc001xgd.1	-	2	693	c.103C>G	c.(103-105)CAG>GAG	p.Q35E	PPP2R5E_uc001xge.2_Missense_Mutation_p.Q35E|PPP2R5E_uc010tsh.1_Missense_Mutation_p.Q35E|PPP2R5E_uc001xgf.1_RNA|PPP2R5E_uc001xgg.3_Missense_Mutation_p.Q35E	NM_006246	NP_006237	Q16537	2A5E_HUMAN	epsilon isoform of regulatory subunit B56,	35					signal transduction	cytoplasm|intracellular membrane-bounded organelle|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00197)|all cancers(60;0.0153)|BRCA - Breast invasive adenocarcinoma(234;0.128)		GACCTAAACTGTGAGGAACTT	0.463													7	72					0	0	0	0
C14orf50	145376	broad.mit.edu	37	14	65041172	65041172	+	Splice_Site	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:65041172G>C	uc001xhl.1	+	8	630	c.534_splice	c.e8-1	p.V178_splice		NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376											skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		CTCCCCATCAGAGGCCTTGTA	0.348													7	48					0	0	0	0
SPTB	6710	broad.mit.edu	37	14	65261194	65261194	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:65261194C>T	uc001xht.2	-	12	1840	c.1786G>A	c.(1786-1788)GAG>AAG	p.E596K	SPTB_uc001xhr.2_Missense_Mutation_p.E596K|SPTB_uc001xhs.2_Missense_Mutation_p.E596K|SPTB_uc001xhu.2_Missense_Mutation_p.E596K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	596	Spectrin 3.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCTTTCCCCTCGGTGAACTTC	0.532													17	154					0	0	0	0
PCNX	22990	broad.mit.edu	37	14	71495434	71495434	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:71495434G>C	uc001xmo.2	+	16	3930	c.3484G>C	c.(3484-3486)GCA>CCA	p.A1162P	PCNX_uc010are.1_Missense_Mutation_p.A1051P|PCNX_uc010arf.1_Missense_Mutation_p.A22P	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1162	Helical; (Potential).					integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		AAGCCTGCTTGCAGCACTTTA	0.303													44	46					0	0	0	0
ABCD4	5826	broad.mit.edu	37	14	74759945	74759945	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:74759945C>A	uc001xpr.2	-	8	878	c.726G>T	c.(724-726)GGG>GGT	p.G242G	ABCD4_uc001xps.2_Silent_p.G83G|ABCD4_uc001xpt.2_Silent_p.G83G|ABCD4_uc010tur.1_Silent_p.G138G|ABCD4_uc001xpu.2_Intron|ABCD4_uc001xpv.2_Intron	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	242	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		GCTCCACATGCCCAGCTCTGA	0.597													14	72					2.32078e-09	5.10631e-09	1	0
YLPM1	56252	broad.mit.edu	37	14	75248679	75248679	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:75248679C>A	uc001xqj.3	+	4	2057	c.1933C>A	c.(1933-1935)CAG>AAG	p.Q645K	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	450					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		GATACCTCCTCAGTTAACAGC	0.547													16	48					1.3612e-06	2.8186e-06	1	0
YLPM1	56252	broad.mit.edu	37	14	75248700	75248700	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:75248700C>T	uc001xqj.3	+	4	2078	c.1954C>T	c.(1954-1956)CCA>TCA	p.P652S	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	457					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		AGCCCCAGTTCCACCAGCCTC	0.547													15	47					0	0	0	0
EIF2B2	8892	broad.mit.edu	37	14	75473335	75473335	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:75473335G>C	uc001xrc.1	+	6	831	c.749G>C	c.(748-750)GGA>GCA	p.G250A		NM_014239	NP_055054	P49770	EI2BB_HUMAN	eukaryotic translation initiation factor 2B,	250					cellular response to stimulus|myelination|oligodendrocyte development|ovarian follicle development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	ATP binding|GTP binding|protein binding|translation initiation factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00661)		GCTGTGACAGGAACTCACACT	0.527													35	202					0	0	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102500686	102500686	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:102500686G>C	uc001yks.2	+	56	10815	c.10651G>C	c.(10651-10653)GAA>CAA	p.E3551Q		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3551					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TGCCAGGACGGAATACCTTTC	0.502													6	68					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106321086	106321086	+	RNA	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr14:106321086G>A	uc010tyt.1	-	3600		c.56065C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CGGTGCACGTGAACCTCTCCC	0.622													5	26					0	0	0	0
Unknown	0	broad.mit.edu	37	15	20490580	20490580	+	RNA	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:20490580T>A	uc001ytf.1	+	4		c.560T>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TAAGACACTGTGGCTTCAGGT	0.463													14	321					0	0	0	0
Unknown	0	broad.mit.edu	37	15	20649480	20649480	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:20649480C>A	uc001ytg.2	-	18	2738	c.2029G>T	c.(2029-2031)GAA>TAA	p.E677*	uc010tyx.1_RNA|uc001yth.3_Nonsense_Mutation_p.E677*|uc010tyy.1_Nonsense_Mutation_p.E677*					RecName: Full=Putative HERC2-like protein 3;																		AGTCACCCACCAGAGTCGTCC	0.562													16	85					5.45024e-15	1.29655e-14	1	0
BCL8	606	broad.mit.edu	37	15	20876530	20876530	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:20876530C>A	uc010tze.1	-	2	290	c.83G>T	c.(82-84)GGT>GTT	p.G28V	BCL8_uc010tzd.1_RNA	NR_027992				RecName: Full=Putative protein BCL8;												0						ATGAGATAAACCATCAAGGTA	0.343													7	64					0.00198382	0.003734	1	0
OR4N3P	390539	broad.mit.edu	37	15	22414121	22414121	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:22414121C>T	uc001yuf.2	+	1	420	c.420C>T	c.(418-420)GTC>GTT	p.V140V		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CCTATGCAGTCATTCTTTGTC	0.473													12	87					0	0	0	0
C15orf2	23742	broad.mit.edu	37	15	24923661	24923661	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:24923661C>A	uc001ywo.2	+	1	3121	c.2647C>A	c.(2647-2649)CCA>ACA	p.P883T		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	883					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		AGATAGGAGACCAACCACAAC	0.483													16	122					6.31663e-08	1.34114e-07	1	0
SNORD115-41	100033815	broad.mit.edu	37	15	25490534	25490534	+	5'Flank	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:25490534C>A	uc001zaj.1	+						uc001zae.2_RNA|SNORD115-10_uc001zak.1_5'Flank	NR_003356				Homo sapiens small nucleolar RNA, C/D box 115-41 (SNORD115-41), non-coding RNA.												0						AGCTCAGACCCTCCGTGGCAC	0.612													6	50					8.12818e-05	0.000159302	1	0
ATP10A	57194	broad.mit.edu	37	15	25953204	25953204	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:25953204C>G	uc010ayu.2	-	12	2600	c.2494G>C	c.(2494-2496)GAA>CAA	p.E832Q		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	832	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GATTCGGCTTCTAGGTGGCTT	0.537													9	48					0	0	0	0
ARHGAP11A	9824	broad.mit.edu	37	15	32929051	32929051	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:32929051A>T	uc001zgy.1	+	12	2799	c.2077A>T	c.(2077-2079)ACT>TCT	p.T693S	ARHGAP11A_uc010ubw.1_Missense_Mutation_p.T504S|ARHGAP11A_uc010ubx.1_Missense_Mutation_p.T504S	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	693					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		ATGTTATTCAACTCAGATGAA	0.318													4	24					0	0	0	0
DUOXA1	90527	broad.mit.edu	37	15	45409770	45409770	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:45409770G>C	uc001zup.2	-	11	1795	c.1395C>G	c.(1393-1395)TTC>TTG	p.F465L	DUOXA2_uc001zuo.2_Intron|DUOXA2_uc010beb.2_Intron|DUOXA1_uc010uem.1_Missense_Mutation_p.F420L|DUOXA1_uc010bec.2_Missense_Mutation_p.F465L	NM_144565	NP_653166	Q1HG43	DOXA1_HUMAN	Numb-interacting protein	Error:Variant_position_missing_in_Q1HG43_after_alignment					protein transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		all_cancers(109;6.02e-08)|all_epithelial(112;1.83e-06)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.82e-18)|GBM - Glioblastoma multiforme(94;4.39e-07)|COAD - Colon adenocarcinoma(120;0.0676)|Colorectal(133;0.0686)		AAAGATGGAAGAAGGCCCGGG	0.224													4	7					0	0	0	0
GALK2	2585	broad.mit.edu	37	15	49584728	49584728	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:49584728C>G	uc001zxj.1	+	8	1059	c.961C>G	c.(961-963)CAA>GAA	p.Q321E	GALK2_uc001zxi.1_Missense_Mutation_p.Q310E|GALK2_uc010ufb.1_Missense_Mutation_p.Q297E|GALK2_uc001zxk.2_RNA|GALK2_uc010ufc.1_Missense_Mutation_p.Q297E	NM_002044	NP_002035	Q01415	GALK2_HUMAN	galactokinase 2 isoform 1	321					galactose metabolic process	cytoplasm	ATP binding|galactokinase activity|N-acetylgalactosamine kinase activity			breast(1)	1		all_lung(180;0.000325)		all cancers(107;3.71e-08)|GBM - Glioblastoma multiforme(94;7e-05)		TCCAAACACTCAAGATGGTGA	0.458													6	32					0	0	0	0
SLTM	79811	broad.mit.edu	37	15	59209166	59209166	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:59209166C>G	uc002afp.2	-	3	371	c.283G>C	c.(283-285)GAT>CAT	p.D95H	SLTM_uc002afo.2_Missense_Mutation_p.D95H|SLTM_uc002afq.2_5'UTR|SLTM_uc010bgd.2_5'UTR|SLTM_uc002afr.1_Missense_Mutation_p.D95H	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	95					apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						ACAGAAGCATCTCCACTCAAC	0.323													3	19					0	0	0	0
CILP	8483	broad.mit.edu	37	15	65497636	65497636	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:65497636T>A	uc002aon.2	-	5	774	c.593A>T	c.(592-594)CAG>CTG	p.Q198L		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	198	TSP type-1.				negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						TGTACAGTCCTGGCCCATGCA	0.592													19	96					0	0	0	0
CSPG4	1464	broad.mit.edu	37	15	75977614	75977614	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:75977614C>T	uc002baw.2	-	4	4311	c.4218G>A	c.(4216-4218)CTG>CTA	p.L1406L		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1406	CSPG 9.|Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).|Interaction with COL5A1 (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						CCTCCTTCTGCAGGGCTCCAT	0.672													5	56					0	0	0	0
RASGRF1	5923	broad.mit.edu	37	15	79320138	79320138	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:79320138C>A	uc002beq.2	-	9	1701	c.1326G>T	c.(1324-1326)ATG>ATT	p.M442I	RASGRF1_uc002bep.2_Missense_Mutation_p.M442I|RASGRF1_uc010blm.1_Missense_Mutation_p.M364I|RASGRF1_uc002ber.3_Missense_Mutation_p.M442I	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	442					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CTTCGATGATCATGCGCTCGA	0.562													6	102					2.0095e-06	4.12217e-06	1	0
FAM108C1	58489	broad.mit.edu	37	15	81041863	81041863	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:81041863G>T	uc002bfu.2	+	2	719	c.600G>T	c.(598-600)GTG>GTT	p.V200V	FAM108C1_uc002bft.2_Silent_p.V193V	NM_021214	NP_067037	Q6PCB6	F108C_HUMAN	hypothetical protein LOC58489	200							hydrolase activity				0						GGTATGGCGTGAGTCCCGAGA	0.483													8	70					3.09899e-07	6.50898e-07	1	0
KIAA1199	57214	broad.mit.edu	37	15	81225753	81225753	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:81225753C>G	uc002bfw.1	+	22	3221	c.2961C>G	c.(2959-2961)ATC>ATG	p.I987M	KIAA1199_uc010unn.1_Missense_Mutation_p.I987M	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	987										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CAGACTGCATCAATGTTCCCG	0.542													16	65					0	0	0	0
ACAN	176	broad.mit.edu	37	15	89414699	89414699	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:89414699G>A	uc010upo.1	+	14	7407	c.7033G>A	c.(7033-7035)GAG>AAG	p.E2345K	ACAN_uc010upp.1_Missense_Mutation_p.E2307K|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2345					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GGTGGATGCTGAGCGCCGGTG	0.637													5	32					0	0	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92981809	92981809	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:92981809C>T	uc002bra.2	+	4	672	c.517C>T	c.(517-519)CAG>TAG	p.Q173*	ST8SIA2_uc002brb.2_Nonsense_Mutation_p.Q152*	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	173	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			CGGCTGTGGGCAGGAGATTGA	0.602													5	40					0	0	0	0
MCTP2	55784	broad.mit.edu	37	15	94901811	94901811	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:94901811A>T	uc002btj.2	+	9	1336	c.1271A>T	c.(1270-1272)GAC>GTC	p.D424V	MCTP2_uc010urg.1_3'UTR|MCTP2_uc002bti.2_Missense_Mutation_p.D424V|MCTP2_uc010boj.2_Missense_Mutation_p.D153V|MCTP2_uc010bok.2_Missense_Mutation_p.D424V|MCTP2_uc002btk.3_Missense_Mutation_p.D12V|MCTP2_uc002btl.2_Missense_Mutation_p.D12V	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	424	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TGGGGAAAGGACAACAAAAAG	0.502													6	21					0	0	0	0
TARSL2	123283	broad.mit.edu	37	15	102215919	102215919	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr15:102215919A>T	uc002bxm.2	-	13	1727	c.1672T>A	c.(1672-1674)TGT>AGT	p.C558S	TARSL2_uc002bxl.2_Missense_Mutation_p.C103S|TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	558					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AACTGCAAACACCCCTTTATT	0.328													19	47					0	0	0	0
CRAMP1L	57585	broad.mit.edu	37	16	1720768	1720768	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:1720768G>C	uc010uvh.1	+	19	3603	c.3603G>C	c.(3601-3603)TCG>TCC	p.S1201S	CRAMP1L_uc002cmf.2_RNA	NM_020825	NP_065876	Q96RY5	CRML_HUMAN	Crm, cramped-like	1201	Ser-rich.					nucleus	DNA binding				0						ATGGAAACTCGCGGGACTCAT	0.582													12	65					0	0	0	0
PKD1	5310	broad.mit.edu	37	16	2159507	2159507	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:2159507G>A	uc002cos.1	-	15	5870	c.5661C>T	c.(5659-5661)ATC>ATT	p.I1887I	PKD1_uc002cot.1_Silent_p.I1887I	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1887	PKD 14.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CCAGGCCCACGATGGGCTCCT	0.652													4	21					0	0	0	0
ZNF213	7760	broad.mit.edu	37	16	3187533	3187533	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:3187533C>G	uc010uws.1	+	2	699	c.252C>G	c.(250-252)ATC>ATG	p.I84M	ZNF213_uc002cud.2_RNA|ZNF213_uc010btf.2_Missense_Mutation_p.I84M|ZNF213_uc010bth.2_Missense_Mutation_p.I84M|ZNF213_uc010uwt.1_Missense_Mutation_p.I84M	NM_004220	NP_004211	O14771	ZN213_HUMAN	zinc finger protein 213	84	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGGAGCAGATCCTGGAGCTGC	0.662													9	61					0	0	0	0
MEFV	4210	broad.mit.edu	37	16	3304450	3304450	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:3304450G>A	uc002cun.1	-	2	658	c.618C>T	c.(616-618)AAC>AAT	p.N206N		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	206					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CGGAGCTGGCGTTTCTGCGCA	0.756													10	40					0	0	0	0
ZNF597	146434	broad.mit.edu	37	16	3487315	3487315	+	Silent	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:3487315T>A	uc002cvd.2	-	4	568	c.384A>T	c.(382-384)CCA>CCT	p.P128P		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTCTACTAATGGGGTGTGGT	0.413													24	76					0	0	0	0
BTBD12	84464	broad.mit.edu	37	16	3633428	3633428	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:3633428G>A	uc002cvp.2	-	14	5450	c.4823C>T	c.(4822-4824)TCA>TTA	p.S1608L		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1608	Interaction with MUS81.|Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CTCGGAGTCTGAGTCCAGGGT	0.597								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				8	122					0	0	0	0
ABAT	18	broad.mit.edu	37	16	8860098	8860098	+	Missense_Mutation	SNP	G	A	A	rs139121258	by1000genomes	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:8860098G>A	uc002czc.3	+	9	740	c.574G>A	c.(574-576)GAG>AAG	p.E192K	ABAT_uc002czd.3_Missense_Mutation_p.E192K|ABAT_uc010buh.2_Missense_Mutation_p.E134K|ABAT_uc010bui.2_Missense_Mutation_p.E192K	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	192					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	CTTCTCCCAGGAGGAGCTGGA	0.552													9	26					0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15179505	15179505	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:15179505C>T	uc002dde.2	-	6	591	c.523G>A	c.(523-525)GAA>AAA	p.E175K	PDXDC1_uc002ddc.2_Intron|RRN3_uc010uzp.1_Missense_Mutation_p.E76K|RRN3_uc010uzq.1_Missense_Mutation_p.E145K|RRN3_uc002ddf.1_Missense_Mutation_p.E175K	NM_018427	NP_060897	Q9NYV6	RRN3_HUMAN	RRN3 RNA polymerase I transcription factor	175					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm				ovary(1)	1						CTATCATCTTCATCATCAGAA	0.224													5	26					0	0	0	0
MYH11	4629	broad.mit.edu	37	16	15833949	15833949	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:15833949C>T	uc002ddy.2	-	23	3063	c.2956G>A	c.(2956-2958)GAG>AAG	p.E986K	MYH11_uc002ddv.2_Missense_Mutation_p.E993K|MYH11_uc002ddw.2_Missense_Mutation_p.E986K|MYH11_uc002ddx.2_Missense_Mutation_p.E993K|MYH11_uc010bvg.2_Missense_Mutation_p.E818K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	986	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						ACCAGGATCTCATCCTCCAGT	0.363			T	CBFB	AML								7	119					0	0	0	0
GP2	2813	broad.mit.edu	37	16	20329553	20329553	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:20329553T>G	uc002dgv.2	-	8	1299	c.1216A>C	c.(1216-1218)ACT>CCT	p.T406P	GP2_uc002dgw.2_Missense_Mutation_p.T403P|GP2_uc002dgx.2_Missense_Mutation_p.T259P|GP2_uc002dgy.2_Missense_Mutation_p.T256P	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	406	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						TTGTCTTCAGTGGGGGTGGCA	0.468													7	48					0	0	0	0
SCNN1G	6340	broad.mit.edu	37	16	23226476	23226476	+	Missense_Mutation	SNP	G	A	A	rs143742457		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:23226476G>A	uc002dlm.1	+	13	1775	c.1636G>A	c.(1636-1638)GTC>ATC	p.V546I		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	546	Helical; (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	TGTTGTCTGCGTCATCGAGAT	0.552													12	54					0	0	0	0
GTF3C1	2975	broad.mit.edu	37	16	27561184	27561184	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:27561184C>G	uc002dov.1	-	1	68	c.28G>C	c.(28-30)GAA>CAA	p.E10Q	GTF3C1_uc002dou.2_Missense_Mutation_p.E10Q|KIAA0556_uc002dow.2_5'Flank	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	10						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						AGAGCGACTTCGTCCAACAAC	0.687													10	23					0	0	0	0
MYST1	84148	broad.mit.edu	37	16	31131716	31131716	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:31131716G>T	uc002eay.2	+	3	361	c.343G>T	c.(343-345)GTG>TTG	p.V115L	MYST1_uc002eax.2_Missense_Mutation_p.V115L	NM_032188	NP_115564	Q9H7Z6	MYST1_HUMAN	MYST histone acetyltransferase 1 isoform 1	115	Chromo.				histone H4-K16 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex|MSL complex	histone acetyltransferase activity|metal ion binding|methylated histone residue binding|transcription factor binding			ovary(1)	1						GACCAAGACAGTGAAGGATGC	0.557													23	41					1.64293e-13	3.86133e-13	1	0
ITGAM	3684	broad.mit.edu	37	16	31308844	31308844	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:31308844T>C	uc002ebq.2	+	13	1464	c.1366T>C	c.(1366-1368)TAC>CAC	p.Y456H	ITGAM_uc002ebr.2_Missense_Mutation_p.Y456H|ITGAM_uc010cam.1_Missense_Mutation_p.L59P|ITGAM_uc010can.2_5'UTR	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	456	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						GATCGGCGCCTACTTCGGGGC	0.587													35	162					0	0	0	0
TGFB1I1	7041	broad.mit.edu	37	16	31487345	31487345	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:31487345C>G	uc002ecd.1	+	8	753	c.727C>G	c.(727-729)CTG>GTG	p.L243V	TGFB1I1_uc002ece.1_Missense_Mutation_p.L226V|TGFB1I1_uc010caq.1_Missense_Mutation_p.L82V	NM_001042454	NP_001035919	O43294	TGFI1_HUMAN	transforming growth factor beta 1 induced	243	LIM zinc-binding 1.				androgen receptor signaling pathway|cell adhesion|negative regulation of cell proliferation|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|transcription from RNA polymerase II promoter|ubiquitin-dependent SMAD protein catabolic process|Wnt receptor signaling pathway	cytoplasm|cytoskeleton|focal adhesion|nuclear matrix	androgen receptor binding|I-SMAD binding|Roundabout binding|transcription coactivator activity|zinc ion binding				0						GGTGACGGCTCTGGGCCGCGC	0.647													15	52					0	0	0	0
Unknown	0	broad.mit.edu	37	16	32070547	32070547	+	5'Flank	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:32070547T>G	uc002ecv.1	+											Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GCCCACTTCCTGGTGCAGCTG	0.577													6	42					0	0	0	0
Unknown	0	broad.mit.edu	37	16	32192631	32192631	+	RNA	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:32192631G>T	uc010vfv.1	-	5		c.715C>A								Homo sapiens cDNA FLJ60890 complete cds, moderately similar to HECT domain and RCC1-like domain-containing protein 2.																		GCCAAGTGCTGGTCCTGCAGG	0.587													4	23					3.59834e-05	7.18033e-05	1	0
UBE2MP1	606551	broad.mit.edu	37	16	34404619	34404619	+	RNA	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:34404619C>A	uc002edv.1	-	1		c.144G>T				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						ATCATCCTACCGCTgccgccg	0.478													3	14					6.4e-05	0.000126162	1	0
ABCC12	94160	broad.mit.edu	37	16	48145806	48145806	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:48145806C>G	uc002efc.1	-	14	2351	c.2005G>C	c.(2005-2007)GAT>CAT	p.D669H	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	669	ABC transporter 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				ATAACTTCATCACAAGACTCT	0.393													6	33					0	0	0	0
CDH8	1006	broad.mit.edu	37	16	61851473	61851473	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:61851473T>C	uc002eog.1	-	7	1439	c.1187A>G	c.(1186-1188)TAC>TGC	p.Y396C	CDH8_uc002eoh.2_Missense_Mutation_p.Y165C	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	396	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TTCAAGTAGGTAAGTCGGTGA	0.483													9	39					0	0	0	0
C16orf70	80262	broad.mit.edu	37	16	67173918	67173918	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:67173918G>A	uc002erc.2	+	10	777	c.693G>A	c.(691-693)AAG>AAA	p.K231K	C16orf70_uc002erd.2_Silent_p.K231K	NM_025187	NP_079463	Q9BSU1	CP070_HUMAN	lin-10	231										ovary(2)	2		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0017)|Epithelial(162;0.00655)|all cancers(182;0.0579)		CAGATGCCAAGATGCGGGTAT	0.473													10	198					0	0	0	0
HSD11B2	3291	broad.mit.edu	37	16	67470691	67470691	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:67470691C>T	uc002etd.2	+	5	1119	c.1003C>T	c.(1003-1005)CGC>TGC	p.R335C		NM_000196	NP_000187	P80365	DHI2_HUMAN	hydroxysteroid (11-beta) dehydrogenase 2	335					glucocorticoid biosynthetic process	endoplasmic reticulum|microsome					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0401)|Epithelial(162;0.0891)	NADH(DB00157)	AGCTCGGCCCCGCCGCCGCTA	0.637													17	140					0	0	0	0
CYB5B	80777	broad.mit.edu	37	16	69458700	69458700	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:69458700G>C	uc002exg.1	+	1	203	c.114G>C	c.(112-114)TTG>TTC	p.L38F	CYB5B_uc002exf.2_Missense_Mutation_p.L38F|CYB5B_uc010cfl.1_Missense_Mutation_p.L38F	NM_030579	NP_085056	O43169	CYB5B_HUMAN	cytochrome b5 outer mitochondrial membrane	34	Cytochrome b5 heme-binding.				electron transport chain|transport	integral to membrane|mitochondrial outer membrane	heme binding				0		Ovarian(137;0.101)				GCAACTCCTTGAAGGAACTGT	0.607													4	54					0	0	0	0
CYB5B	80777	broad.mit.edu	37	16	69458737	69458737	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:69458737G>A	uc002exg.1	+	1	240	c.151G>A	c.(151-153)GAT>AAT	p.D51N	CYB5B_uc002exf.2_Missense_Mutation_p.D51N|CYB5B_uc010cfl.1_Missense_Mutation_p.D51N	NM_030579	NP_085056	O43169	CYB5B_HUMAN	cytochrome b5 outer mitochondrial membrane	47	Cytochrome b5 heme-binding.				electron transport chain|transport	integral to membrane|mitochondrial outer membrane	heme binding				0		Ovarian(137;0.101)				GCGAGTCTACGATGTCACCCG	0.587													5	40					0	0	0	0
SF3B3	23450	broad.mit.edu	37	16	70573046	70573046	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:70573046G>T	uc002ezf.2	+	8	1214	c.1003G>T	c.(1003-1005)GTT>TTT	p.V335F		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	335					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				TACTGTACCCGTTGCTGCTGC	0.423													43	90					2.215e-12	5.12835e-12	1	0
HYDIN	54768	broad.mit.edu	37	16	71015349	71015349	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:71015349C>G	uc002ezr.2	-	29	4580	c.4452G>C	c.(4450-4452)CTG>CTC	p.L1484L		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1485										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CCTCTCCGCTCAGAGTGATAT	0.483													10	63					0	0	0	0
PMFBP1	83449	broad.mit.edu	37	16	72158692	72158692	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:72158692C>A	uc002fcc.3	-	17	2750	c.2578G>T	c.(2578-2580)GAG>TAG	p.E860*	PMFBP1_uc002fcd.2_Nonsense_Mutation_p.E855*|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Nonsense_Mutation_p.E710*|PMFBP1_uc010cgo.1_Nonsense_Mutation_p.E151*	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	860	Potential.									ovary(2)	2		Ovarian(137;0.179)				AGGAGGTTCTCTTTTAAGGCG	0.567											OREG0023927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	138					8.00594e-06	1.61961e-05	1	0
MLKL	197259	broad.mit.edu	37	16	74716632	74716632	+	Silent	SNP	C	G	G	rs150099936		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:74716632C>G	uc002fdb.2	-	6	1314	c.873G>C	c.(871-873)CTG>CTC	p.L291L	MLKL_uc002fdc.2_Intron	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	291	Protein kinase.		L -> P (in a gastric adenocarcinoma sample; somatic mutation).				ATP binding|protein binding|protein kinase activity	p.L291P(1)		stomach(2)	2						ACAGCTCCCTCAGGGTCCCGA	0.557													3	53					0	0	0	0
TMEM170A	124491	broad.mit.edu	37	16	75481557	75481557	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:75481557C>A	uc002fee.1	-	3	420	c.334G>T	c.(334-336)GCA>TCA	p.A112S	TMEM170A_uc002feb.2_Missense_Mutation_p.A74S|TMEM170A_uc002fec.2_Missense_Mutation_p.A89S|TMEM170A_uc002fed.1_RNA	NM_145254	NP_660297	Q8WVE7	T170A_HUMAN	transmembrane protein 170A	112	Extracellular (Potential).					integral to membrane					0						TCCTTCCCTGCTGCTCGGTAA	0.398													14	73					7.93312e-07	1.64851e-06	1	0
PITPNA	5306	broad.mit.edu	37	17	1437393	1437393	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:1437393T>C	uc002fst.3	-	9	1024	c.768A>G	c.(766-768)GAA>GAG	p.E256E	PITPNA_uc010cjt.2_Silent_p.E140E|PITPNA_uc010cju.2_Silent_p.E154E	NM_006224	NP_006215	Q00169	PIPNA_HUMAN	phosphatidylinositol transfer protein, alpha	256					axon guidance|lipid metabolic process|visual perception	cytoplasm	phosphatidylcholine transmembrane transporter activity|phosphatidylinositol transporter activity|protein binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0845)		CCCCACTTACTTCATCCAGCT	0.502													4	295					0	0	0	0
OR3A4	390756	broad.mit.edu	37	17	3213903	3213903	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:3213903G>T	uc002fvi.2	+	1	365	c.299G>T	c.(298-300)TGC>TTC	p.C100F		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						TATAAGGCCTGCCTCTCCGAG	0.562													24	75					7.87624e-14	1.86108e-13	1	0
CTNS	1497	broad.mit.edu	37	17	3561357	3561357	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:3561357T>C	uc002fwb.2	+	10	1333	c.740T>C	c.(739-741)TTC>TCC	p.F247S	CTNS_uc002fwa.2_Missense_Mutation_p.F247S|CTNS_uc010ckj.2_Missense_Mutation_p.F247S|CTNS_uc010vrv.1_Missense_Mutation_p.F100S|CTNS_uc010vrw.1_Missense_Mutation_p.F139S	NM_004937	NP_004928	O60931	CTNS_HUMAN	cystinosin isoform 2	247	Helical; (Potential).				ATP metabolic process|brain development|cognition|glutathione metabolic process	integral to membrane|late endosome|lysosomal membrane	L-cystine transmembrane transporter activity				0				COAD - Colon adenocarcinoma(5;0.0829)	L-Cystine(DB00138)	GCGTGGCTCTTCGCATTTGTC	0.622													38	81					0	0	0	0
SPNS3	201305	broad.mit.edu	37	17	4389751	4389751	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:4389751G>T	uc002fxt.2	+	11	1367	c.1323G>T	c.(1321-1323)CAG>CAT	p.Q441H	SPNS3_uc002fxu.2_Missense_Mutation_p.Q314H|SPNS3_uc002fxv.2_Missense_Mutation_p.Q92H|uc002fxw.1_5'Flank	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	441					lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						CCTATCTGCAGCGCTTCCGCA	0.662													8	45					2.62144e-13	6.12831e-13	1	0
DVL2	1856	broad.mit.edu	37	17	7131012	7131012	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:7131012G>A	uc002gez.1	-	11	1475	c.1193C>T	c.(1192-1194)TCC>TTC	p.S398F	DVL2_uc010vtr.1_Missense_Mutation_p.S392F	NM_004422	NP_004413	O14641	DVL2_HUMAN	dishevelled 2	398					canonical Wnt receptor signaling pathway involved in regulation of cell proliferation|intracellular signal transduction|neural tube closure|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|segment specification|transcription from RNA polymerase II promoter	cytosol|nucleus|plasma membrane	frizzled binding|identical protein binding|signal transducer activity			lung(1)|kidney(1)	2						GGTGCTCATGGAGGAGGAACC	0.597													5	17					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	A	A	rs121913343		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:7577121G>A	uc002gim.2	-	8	1011	c.817C>T	c.(817-819)CGT>TGT	p.R273C	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141C|TP53_uc010cng.1_Missense_Mutation_p.R141C|TP53_uc002gii.1_Missense_Mutation_p.R141C|TP53_uc010cnh.1_Missense_Mutation_p.R273C|TP53_uc010cni.1_Missense_Mutation_p.R273C|TP53_uc002gij.2_Missense_Mutation_p.R273C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	273	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> S (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R273H(467)|p.R273C(396)|p.R273L(83)|p.R273P(24)|p.R273S(11)|p.R273G(9)|p.0?(7)|p.R273fs*72(3)|p.?(2)|p.R273fs*33(2)|p.F270fs*72(1)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.R273R(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCACAAACACGCACCTCAAAG	0.542	R273C(SH10TC_STOMACH)|R273C(SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(8MGBA_CENTRAL_NERVOUS_SYSTEM)|R273C(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273C(BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(SW1710_URINARY_TRACT)|R273C(RH30_SOFT_TISSUE)|R273C(PANC0213_PANCREAS)|R273C(SJRH30_SOFT_TISSUE)|R273C(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(RDES_BONE)|R273C(TT2609C02_THYROID)|R273C(MFE319_ENDOMETRIUM)|R273C(RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(EFO27_OVARY)|R273C(NCIH1048_LUNG)|R273C(KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			13	18					0	0	0	0
WDR16	146845	broad.mit.edu	37	17	9536276	9536276	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:9536276C>G	uc002gly.2	+	10	1315	c.1246C>G	c.(1246-1248)CAC>GAC	p.H416D	WDR16_uc002glz.2_Missense_Mutation_p.H348D|WDR16_uc010coc.2_Missense_Mutation_p.H426D	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	416	WD 7.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						TAACAATGCTCACAGGATCGG	0.517													9	54					0	0	0	0
MYH1	4619	broad.mit.edu	37	17	10406202	10406202	+	Silent	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:10406202A>G	uc002gmo.2	-	24	3058	c.2964T>C	c.(2962-2964)GGT>GGC	p.G988G	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	988	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTTCATCCAGACCCGCCATCT	0.507													30	148					0	0	0	0
MYOCD	93649	broad.mit.edu	37	17	12666489	12666489	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:12666489C>T	uc002gnn.2	+	13	2644	c.2345C>T	c.(2344-2346)TCG>TTG	p.S782L	MYOCD_uc002gno.2_Missense_Mutation_p.S830L|MYOCD_uc002gnq.2_Missense_Mutation_p.S506L	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	782					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ACCAAGCCCTCGGCTTCCTTT	0.498													5	89					0	0	0	0
MYOCD	93649	broad.mit.edu	37	17	12666815	12666815	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:12666815G>C	uc002gnn.2	+	13	2970	c.2671G>C	c.(2671-2673)GAG>CAG	p.E891Q	MYOCD_uc002gno.2_Missense_Mutation_p.E939Q|MYOCD_uc002gnq.2_Missense_Mutation_p.E615Q	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	891					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GGAAACCATGGAGTGGCTGGA	0.552													9	40					0	0	0	0
KIAA0100	9703	broad.mit.edu	37	17	26961727	26961727	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:26961727G>A	uc002hbu.2	-	16	2977	c.2878C>T	c.(2878-2880)CGC>TGC	p.R960C		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	960						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					AGTGCCCGGCGCATGGGTGTG	0.527													7	109					0	0	0	0
TAOK1	57551	broad.mit.edu	37	17	27829692	27829692	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:27829692C>G	uc002hdz.1	+	13	1483	c.1289C>G	c.(1288-1290)TCA>TGA	p.S430*	TAOK1_uc010wbe.1_Nonsense_Mutation_p.S430*|TAOK1_uc010wbf.1_Nonsense_Mutation_p.S430*|TAOK1_uc002heb.1_Nonsense_Mutation_p.S256*	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	430					mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			CGTCACAAATCACACTATCGT	0.393													7	41					0	0	0	0
LRRC37B	114659	broad.mit.edu	37	17	30374901	30374901	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:30374901C>G	uc002hgu.2	+	9	2375	c.2364C>G	c.(2362-2364)ATC>ATG	p.I788M	LRRC37B_uc010wbx.1_Missense_Mutation_p.I706M|LRRC37B_uc010csu.2_Missense_Mutation_p.I737M	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	788	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				GCAGTGGCATCAACTTGTCAG	0.507													25	309					0	0	0	0
SLFN12	55106	broad.mit.edu	37	17	33749704	33749704	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:33749704G>C	uc002hji.3	-	2	721	c.344C>G	c.(343-345)TCT>TGT	p.S115C	SLFN12_uc002hjj.3_Missense_Mutation_p.S115C|SLFN12_uc010cts.2_Missense_Mutation_p.S115C	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	115							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCGCAGACCAGAGGTGTTCAA	0.398													9	54					0	0	0	0
MYO19	80179	broad.mit.edu	37	17	34871743	34871743	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:34871743C>G	uc010wcy.1	-	8	1497	c.505G>C	c.(505-507)GAA>CAA	p.E169Q	MYO19_uc002hmw.2_Missense_Mutation_p.E169Q|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA|MYO19_uc010wda.1_Missense_Mutation_p.E35Q|MYO19_uc002hmx.2_Missense_Mutation_p.E169Q	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	169	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		ATCCTCTGTTCTATCCTCTCT	0.517													8	37					0	0	0	0
HNF1B	6928	broad.mit.edu	37	17	36093688	36093688	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:36093688G>C	uc002hok.3	-	3	892	c.671C>G	c.(670-672)TCT>TGT	p.S224C	HNF1B_uc010wdi.1_Missense_Mutation_p.S198C|HNF1B_uc010cve.1_Missense_Mutation_p.S32C	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	224					endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			GGTGGGCTCAGAGCAGGCATC	0.552									Hereditary_Prostate_Cancer				15	56					0	0	0	0
GPR179	440435	broad.mit.edu	37	17	36484183	36484183	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:36484183C>G	uc002hpz.2	-	11	5290	c.5269G>C	c.(5269-5271)GAG>CAG	p.E1757Q		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1757	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				ACCTCCCACTCTGGGGTTGGC	0.547													5	50					0	0	0	0
GPR179	440435	broad.mit.edu	37	17	36484226	36484226	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:36484226C>G	uc002hpz.2	-	11	5247	c.5226G>C	c.(5224-5226)GAG>GAC	p.E1742D		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1742	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TAACAGCTCTCTCCCTGGGTC	0.577													5	52					0	0	0	0
GPR179	440435	broad.mit.edu	37	17	36484372	36484372	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:36484372C>A	uc002hpz.2	-	11	5101	c.5080G>T	c.(5080-5082)GAG>TAG	p.E1694*		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1694	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				AAGTTTTCCTCCACATCCAAA	0.557													7	110					0.00307968	0.00575353	1	0
GPR179	440435	broad.mit.edu	37	17	36484653	36484653	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:36484653C>G	uc002hpz.2	-	11	4820	c.4799G>C	c.(4798-4800)AGA>ACA	p.R1600T		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1600	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTCTCTTGTTCTTTCATTTAC	0.493													10	183					0	0	0	0
GPR179	440435	broad.mit.edu	37	17	36485276	36485276	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:36485276C>A	uc002hpz.2	-	11	4197	c.4176G>T	c.(4174-4176)GGG>GGT	p.G1392G		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1392	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GGGCTGGTTTCCCATCCTCGC	0.557													8	132					1.12685e-05	2.25627e-05	1	0
KCNH4	23415	broad.mit.edu	37	17	40315263	40315263	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:40315263G>A	uc002hzb.2	-	14	2900	c.2567C>T	c.(2566-2568)TCC>TTC	p.S856F		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	856	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GGGCGCCTGGGAGCGGGGCCT	0.517													11	46					0	0	0	0
EZH1	2145	broad.mit.edu	37	17	40865279	40865279	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:40865279T>C	uc002iaz.2	-	11	1297	c.1152A>G	c.(1150-1152)AAA>AAG	p.K384K	EZH1_uc002iba.2_Silent_p.K375K|EZH1_uc010wgt.1_Silent_p.K314K|EZH1_uc010wgu.1_Silent_p.K390K|EZH1_uc010wgv.1_Silent_p.K344K|EZH1_uc010wgw.1_Silent_p.K245K|EZH1_uc010cyp.2_Silent_p.K285K|EZH1_uc010cyq.2_Silent_p.K301K|EZH1_uc010cys.2_Silent_p.K335K|EZH1_uc010cyo.1_Silent_p.K47K|EZH1_uc010cyr.1_Silent_p.K36K	NM_001991	NP_001982	Q92800	EZH1_HUMAN	enhancer of zeste homolog 1	384					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	chromatin binding|DNA binding			ovary(3)	3		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0784)		TGTCTCCTTCTTTAGTCTCAG	0.527													27	56					0	0	0	0
RPRML	388394	broad.mit.edu	37	17	45056164	45056164	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:45056164G>T	uc002ilb.2	-	1	451	c.210C>A	c.(208-210)ATC>ATA	p.I70I	GOSR2_uc010wkh.1_Intron	NM_203400	NP_981945	Q8N4K4	RPRML_HUMAN	reprimo-like	70	Helical; (Potential).					integral to membrane					0						AGAGCACGGCGATCTGCGCCA	0.687													30	33					1.57351e-24	3.89611e-24	1	0
SPOP	8405	broad.mit.edu	37	17	47699430	47699430	+	Splice_Site	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:47699430C>G	uc010dbk.2	-	4	711	c.79_splice	c.e4-1	p.I27_splice	SPOP_uc002ipb.2_Splice_Site_p.I27_splice|SPOP_uc002ipc.2_Splice_Site_p.I27_splice|SPOP_uc002ipd.2_Splice_Site_p.I27_splice|SPOP_uc002ipe.2_Splice_Site_p.I27_splice|SPOP_uc002ipf.2_Splice_Site_p.I27_splice|SPOP_uc002ipg.2_Splice_Site_p.I27_splice	NM_003563	NP_003554	O43791	SPOP_HUMAN	speckle-type POZ protein						mRNA processing	nucleus	protein binding			prostate(2)|ovary(2)|lung(2)	6						CTACCTTGATCTGTTGATAGA	0.398										Prostate(2;0.17)			13	19					0	0	0	0
C17orf71	55181	broad.mit.edu	37	17	57288086	57288086	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:57288086G>C	uc002ixi.2	+	1	716	c.674G>C	c.(673-675)CGA>CCA	p.R225P		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	225					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					ACTTATGATCGAGTATTCAGA	0.473													31	37					0	0	0	0
TUBD1	51174	broad.mit.edu	37	17	57955478	57955478	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:57955478C>T	uc002ixw.1	-	5	1033	c.755G>A	c.(754-756)AGA>AAA	p.R252K	TUBD1_uc010ddf.1_Missense_Mutation_p.R252K|TUBD1_uc010ddg.1_Missense_Mutation_p.R217K|TUBD1_uc010ddh.1_Missense_Mutation_p.R133K|TUBD1_uc010wok.1_Missense_Mutation_p.R252K|TUBD1_uc002ixx.1_Missense_Mutation_p.R252K|TUBD1_uc010wol.1_Missense_Mutation_p.R36K|TUBD1_uc010ddi.1_Intron	NM_016261	NP_057345	Q9UJT1	TBD_HUMAN	delta-tubulin	252					cell differentiation|microtubule-based movement|multicellular organismal development|protein polymerization|spermatogenesis	centriole|microtubule|nucleus	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1	all_cancers(5;3.18e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;9.34e-13)|all cancers(12;1.91e-11)			TGGATTTCGTCTGTAGTGAAA	0.408													6	27					0	0	0	0
CASKIN2	57513	broad.mit.edu	37	17	73498346	73498346	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:73498346C>G	uc002joc.2	-	18	3359	c.2809G>C	c.(2809-2811)GAG>CAG	p.E937Q	CASKIN2_uc010wsc.1_Missense_Mutation_p.E855Q	NM_020753	NP_065804	Q8WXE0	CSKI2_HUMAN	cask-interacting protein 2 isoform a	937	Pro-rich.					cytoplasm				pancreas(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGCGTCCCCTCAGGGCCTGGC	0.701													6	18					0	0	0	0
NARF	26502	broad.mit.edu	37	17	80439061	80439061	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr17:80439061G>A	uc002kfg.3	+	7	883	c.743G>A	c.(742-744)CGG>CAG	p.R248Q	NARF_uc002kff.3_Missense_Mutation_p.R189Q|NARF_uc010wvo.1_Missense_Mutation_p.R203Q|NARF_uc010wvp.1_Missense_Mutation_p.R120Q|NARF_uc010dit.2_Missense_Mutation_p.R248Q|NARF_uc002kfj.3_Missense_Mutation_p.R200Q|NARF_uc002kfi.3_RNA|NARF_uc002kfh.3_Missense_Mutation_p.R294Q|NARF_uc002kfk.2_RNA	NM_012336	NP_036468	Q9UHQ1	NARF_HUMAN	nuclear prelamin A recognition factor isoform a	248						lamin filament	lamin binding			skin(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			CATGGCTCCCGGGGCGCTGAC	0.587													19	87					0	0	0	0
Unknown	0	broad.mit.edu	37	18	118470	118470	+	RNA	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:118470C>T	uc002kke.2	+	4		c.904C>T								Homo sapiens Rho-associated, coiled-coil containing protein kinase 1, mRNA (cDNA clone IMAGE:5269982), complete cds.																		TCAGTCTTTCCGGAAAGTGGT	0.353													27	163					0	0	0	0
DLGAP1	9229	broad.mit.edu	37	18	3880032	3880032	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:3880032C>G	uc002kmf.2	-	1	104	c.37G>C	c.(37-39)GGG>CGG	p.G13R	DLGAP1_uc010wyz.1_Missense_Mutation_p.G13R|DLGAP1_uc002kmk.2_Missense_Mutation_p.G13R|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	13					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CAGGTGACCCCGTGGTGATGG	0.662													11	25					0	0	0	0
EPB41L3	23136	broad.mit.edu	37	18	5397176	5397176	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:5397176C>A	uc002kmt.1	-	18	2808	c.2722G>T	c.(2722-2724)GAG>TAG	p.E908*	EPB41L3_uc010wzh.1_Nonsense_Mutation_p.E739*|EPB41L3_uc002kmu.1_Nonsense_Mutation_p.E686*|EPB41L3_uc010dkq.1_Nonsense_Mutation_p.E577*|EPB41L3_uc002kms.1_Nonsense_Mutation_p.E143*|EPB41L3_uc010wze.1_Nonsense_Mutation_p.E213*|EPB41L3_uc010wzf.1_Nonsense_Mutation_p.E205*|EPB41L3_uc010wzg.1_Nonsense_Mutation_p.E180*|EPB41L3_uc010dkr.2_Nonsense_Mutation_p.E300*	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	908	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						TTAGCGACCTCCTCCCCTCCT	0.577													24	124					6.44725e-10	1.4329e-09	1	0
PTPRM	5797	broad.mit.edu	37	18	7955122	7955122	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:7955122C>A	uc002knn.3	+	7	1345	c.842C>A	c.(841-843)CCA>CAA	p.P281Q	PTPRM_uc010dkv.2_Missense_Mutation_p.P281Q|PTPRM_uc010wzl.1_Missense_Mutation_p.P68Q	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	281	Fibronectin type-III 1.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				CTTTCAGAACCACCCGTTCCT	0.448													10	56					3.86212e-05	7.65457e-05	1	0
MC2R	4158	broad.mit.edu	37	18	13884801	13884801	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:13884801G>T	uc002ksp.1	-	2	894	c.717C>A	c.(715-717)GTC>GTA	p.V239V		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	239	Helical; Name=6; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	TCATCAAGAGGACATGAAGCA	0.542													7	49					8.12818e-05	0.000159302	1	0
WBP11P1	441818	broad.mit.edu	37	18	30091842	30091842	+	RNA	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:30091842C>T	uc010dmc.2	+	1		c.217C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						AGATCTGCATCATCCACCAAG	0.378													6	68					0	0	0	0
ASXL3	80816	broad.mit.edu	37	18	31323161	31323161	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:31323161C>T	uc010dmg.1	+	12	3404	c.3349C>T	c.(3349-3351)CGA>TGA	p.R1117*	ASXL3_uc002kxq.2_Nonsense_Mutation_p.R824*	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1117					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GCATCAAGCTCGAGCCCATCT	0.527													7	36					0	0	0	0
ASXL3	80816	broad.mit.edu	37	18	31326042	31326042	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:31326042G>T	uc010dmg.1	+	12	6285	c.6230G>T	c.(6229-6231)AGC>ATC	p.S2077I	ASXL3_uc002kxq.2_Missense_Mutation_p.S1784I	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2077					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GGCATATGTAGCAATATAAAA	0.413													13	77					2.32078e-09	5.10631e-09	1	0
FHOD3	80206	broad.mit.edu	37	18	34261476	34261476	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:34261476G>T	uc002kzt.1	+	12	1485	c.1388G>T	c.(1387-1389)CGG>CTG	p.R463L	FHOD3_uc002kzr.1_Missense_Mutation_p.R463L|FHOD3_uc002kzs.1_Missense_Mutation_p.R463L|FHOD3_uc010dmz.1_Missense_Mutation_p.R178L	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	463	Potential.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				GAGAGGCGGCGGCAGGAGAGA	0.433													11	54					0.000673444	0.00128547	1	0
NEDD4L	23327	broad.mit.edu	37	18	56034991	56034991	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:56034991C>G	uc002lgy.2	+	22	2351	c.2077C>G	c.(2077-2079)CTT>GTT	p.L693V	NEDD4L_uc002lgz.2_Missense_Mutation_p.L629V|NEDD4L_uc002lgx.2_Missense_Mutation_p.L673V|NEDD4L_uc010xee.1_Missense_Mutation_p.L572V|NEDD4L_uc002lhc.2_Missense_Mutation_p.L685V|NEDD4L_uc002lhd.2_Missense_Mutation_p.L572V|NEDD4L_uc002lhb.2_Missense_Mutation_p.L552V|NEDD4L_uc002lhe.2_Missense_Mutation_p.L665V|NEDD4L_uc002lhf.2_Missense_Mutation_p.L552V|NEDD4L_uc002lhg.2_Missense_Mutation_p.L572V|NEDD4L_uc002lhh.2_Missense_Mutation_p.L468V|NEDD4L_uc010dpn.2_Intron	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	693	HECT.				cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						CAACTACACCCTTCAGATCAA	0.413													9	43					0	0	0	0
ALPK2	115701	broad.mit.edu	37	18	56202141	56202141	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:56202141T>A	uc002lhj.3	-	5	5492	c.5278A>T	c.(5278-5280)AAA>TAA	p.K1760*	ALPK2_uc002lhk.1_Nonsense_Mutation_p.K1091*	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1760							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GTTTCGAGTTTGGGCATCTTT	0.403													17	118					0	0	0	0
CDH19	28513	broad.mit.edu	37	18	64172405	64172405	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:64172405C>G	uc002lkc.1	-	12	2101	c.1963G>C	c.(1963-1965)GAT>CAT	p.D655H	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_3'UTR	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	655	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				TCTGCTATATCAAAGGCCTCT	0.433													43	167					0	0	0	0
LMNB2	84823	broad.mit.edu	37	19	2435054	2435054	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:2435054T>C	uc002lvy.2	-	5	827	c.740A>G	c.(739-741)CAC>CGC	p.H247R	LMNB2_uc002lwa.1_Missense_Mutation_p.H267R	NM_032737	NP_116126	Q03252	LMNB2_HUMAN	lamin B2	247	Rod.|Coil 2.					nuclear inner membrane	structural molecule activity			large_intestine(1)|ovary(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGCTCGTCGTGCTGGCTCCG	0.532													10	45					0	0	0	0
TLE6	79816	broad.mit.edu	37	19	2987363	2987363	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:2987363C>T	uc002lwu.2	+	7	582	c.182C>T	c.(181-183)CCA>CTA	p.P61L	TLE6_uc002lwt.2_Missense_Mutation_p.P184L|TLE6_uc010dtg.2_Intron|TLE6_uc002lwv.2_5'Flank	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	61					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGCAGGCACCAGGCCTGGTG	0.637													5	74					0	0	0	0
LRG1	116844	broad.mit.edu	37	19	4538167	4538167	+	Missense_Mutation	SNP	C	G	G	rs112633064		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:4538167C>G	uc002mau.2	-	2	840	c.829G>C	c.(829-831)GAG>CAG	p.E277Q	PLIN5_uc002mas.2_5'Flank|PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	277	LRR 8.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGAGCCCCTCGGGCACGCTG	0.642													11	104					0	0	0	0
CRB3	92359	broad.mit.edu	37	19	6465616	6465616	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:6465616C>G	uc002mey.2	+	3	674	c.143C>G	c.(142-144)TCC>TGC	p.S48C	CRB3_uc002mez.2_Missense_Mutation_p.S48C|CRB3_uc002mfa.2_Missense_Mutation_p.S48C	NM_139161	NP_631900	Q9BUF7	CRUM3_HUMAN	crumbs 3 isoform a precursor	48	Extracellular (Potential).				protein localization in plasma membrane|tight junction assembly	apical plasma membrane|integral to membrane|tight junction	SH3 domain binding				0						AGCTCCAGCTCCGATGGCAAC	0.493													48	199					0	0	0	0
C3	718	broad.mit.edu	37	19	6694461	6694461	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:6694461G>T	uc002mfm.2	-	24	3197	c.3135C>A	c.(3133-3135)GCC>GCA	p.A1045A	C3_uc002mfl.2_5'Flank	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1045					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TGAGCTCCAAGGCCCCCTGCC	0.597													12	53					6.40141e-05	0.000126162	1	0
MCOLN1	57192	broad.mit.edu	37	19	7594574	7594574	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:7594574C>G	uc002mgo.2	+	11	1460	c.1335C>G	c.(1333-1335)ATC>ATG	p.I445M	MCOLN1_uc002mgp.2_Missense_Mutation_p.I410M	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	445	Helical; (Potential).				calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						GTGGCTGGATCGTGCTGGGGC	0.582													20	99					0	0	0	0
STXBP2	6813	broad.mit.edu	37	19	7705802	7705802	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:7705802G>C	uc002mha.3	+	6	387	c.342G>C	c.(340-342)CTG>CTC	p.L114L	STXBP2_uc002mhb.3_Silent_p.L111L|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Silent_p.L125L|STXBP2_uc010dvk.2_Silent_p.L82L|STXBP2_uc002mhc.3_5'UTR|STXBP2_uc010dvl.1_Silent_p.L275L	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	114					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						CCGAGCCCCTGTTCAGTGAGC	0.657													6	81					0	0	0	0
CD209	30835	broad.mit.edu	37	19	7810693	7810693	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:7810693C>T	uc002mht.2	-	4	526	c.459G>A	c.(457-459)CTG>CTA	p.L153L	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.L129L|CD209_uc002mhr.2_Silent_p.L129L|CD209_uc002mhs.2_Silent_p.L129L|CD209_uc002mhu.2_Silent_p.L153L|CD209_uc010dvq.2_Silent_p.L153L|CD209_uc002mhq.2_Silent_p.L153L|CD209_uc002mhv.2_Silent_p.L129L|CD209_uc002mhx.2_Silent_p.L109L|CD209_uc002mhw.2_Silent_p.L109L|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	153	Extracellular (Probable).|7 X approximate tandem repeats.|3.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CTGCAGCCTTCAGCCAGGTCA	0.552													17	196					0	0	0	0
HNRNPM	4670	broad.mit.edu	37	19	8531162	8531162	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:8531162G>A	uc010dwe.2	+	7	754	c.674G>A	c.(673-675)AGT>AAT	p.S225N	HNRNPM_uc010dwc.1_Missense_Mutation_p.S225N|HNRNPM_uc010xke.1_Missense_Mutation_p.S186N|HNRNPM_uc010dwd.2_Missense_Mutation_p.S186N|HNRNPM_uc002mka.2_Missense_Mutation_p.S105N	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	225	RRM 2.				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						GAAGTATTTAGTATGGCTGGT	0.403													16	100					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9048498	9048498	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:9048498G>A	uc002mkp.2	-	5	33337	c.33133C>T	c.(33133-33135)CTG>TTG	p.L11045L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11047	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTAGTGACCAGAGAGGTCACC	0.493													18	75					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9068263	9068263	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:9068263T>A	uc002mkp.2	-	3	19387	c.19183A>T	c.(19183-19185)ACT>TCT	p.T6395S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6397	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACCTCAGTAGTAGCAGCAGTG	0.488													11	67					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9083129	9083129	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:9083129C>T	uc002mkp.2	-	1	8890	c.8686G>A	c.(8686-8688)GAG>AAG	p.E2896K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2897	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTGGGACCTCAGAAAACTCA	0.507													5	25					0	0	0	0
OR7D2	162998	broad.mit.edu	37	19	9297146	9297146	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:9297146C>G	uc002mkz.1	+	1	877	c.689C>G	c.(688-690)TCA>TGA	p.S230*		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	230	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						AAGATGTCCTCATCTGGGGGA	0.463													8	58					0	0	0	0
DNM2	1785	broad.mit.edu	37	19	10893674	10893674	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:10893674G>C	uc002mps.1	+	6	891	c.727G>C	c.(727-729)GAG>CAG	p.E243Q	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Missense_Mutation_p.E243Q|DNM2_uc002mpv.1_Missense_Mutation_p.E243Q|DNM2_uc002mpu.1_Missense_Mutation_p.E243Q|DNM2_uc010dxl.1_Missense_Mutation_p.E243Q|DNM2_uc002mpw.2_5'UTR	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	243					G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			GAAGGATATTGAGGGCAAGAA	0.622													6	57					0	0	0	0
ZNF563	147837	broad.mit.edu	37	19	12430511	12430511	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:12430511C>G	uc002mtp.2	-	4	566	c.328G>C	c.(328-330)GAA>CAA	p.E110Q	ZNF563_uc002mtq.2_Missense_Mutation_p.E110Q	NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	110	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATTATGACTTCTTCACACTCA	0.418													13	145					0	0	0	0
ZNF563	147837	broad.mit.edu	37	19	12432114	12432114	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:12432114G>C	uc002mtp.2	-	3	401	c.163C>G	c.(163-165)CAG>GAG	p.Q55E	ZNF563_uc002mtq.2_Missense_Mutation_p.Q55E	NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	55	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTTTTGTACTGATCTTCAGTA	0.299													3	27					0	0	0	0
ZNF443	10224	broad.mit.edu	37	19	12542690	12542690	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:12542690C>A	uc002mtu.2	-	4	494	c.296G>T	c.(295-297)GGA>GTA	p.G99V		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	99					induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						AGGACCTACTCCAGGAAGAGT	0.413													9	51					5.68852e-11	1.28211e-10	1	0
RNASEH2A	10535	broad.mit.edu	37	19	12924254	12924254	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:12924254G>T	uc002mvg.1	+	8	934	c.874G>T	c.(874-876)GGC>TGC	p.G292C	RNASEH2A_uc002mvf.1_Missense_Mutation_p.G210C	NM_006397	NP_006388	O75792	RNH2A_HUMAN	ribonuclease H2, large subunit	292					DNA replication|RNA catabolic process	nucleus|ribonuclease H2 complex	metal ion binding|ribonuclease H activity|RNA binding			breast(2)|central_nervous_system(1)	3						CCTGGAACGCGGCCTGGAGTC	0.542													7	48					0.00198382	0.003734	1	0
CLEC17A	388512	broad.mit.edu	37	19	14710934	14710934	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:14710934C>T	uc010dzn.1	+	12	911	c.834C>T	c.(832-834)GCC>GCT	p.A278A	CLEC17A_uc002mzh.1_Silent_p.A261A|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_Intron|CLEC17A_uc010dzo.1_Silent_p.A278A			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	278	C-type lectin.|Extracellular (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						GGGATGAGGCCCGGATGTTCT	0.527													8	51					0	0	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15587077	15587077	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:15587077C>T	uc002nbf.3	-	2	537	c.404G>A	c.(403-405)CGC>CAC	p.R135H	PGLYRP2_uc002nbg.3_Missense_Mutation_p.R135H	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	135					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						TATGACCCTGCGCCCTTGCAG	0.597													13	67					0	0	0	0
NCAN	1463	broad.mit.edu	37	19	19356187	19356187	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:19356187G>A	uc002nlz.2	+	13	3657	c.3558G>A	c.(3556-3558)GTG>GTA	p.V1186V	NCAN_uc002nma.2_Intron	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1186	C-type lectin.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			ACTGTGTGGTGATGGTGGCGC	0.577													13	53					0	0	0	0
ZNF43	7594	broad.mit.edu	37	19	21991840	21991840	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:21991840C>T	uc002nqj.2	-	4	1129	c.999G>A	c.(997-999)AAG>AAA	p.K333K	ZNF43_uc010ecv.2_Silent_p.K327K|ZNF43_uc002nql.2_Silent_p.K327K|ZNF43_uc002nqm.2_Silent_p.K327K|ZNF43_uc002nqk.2_Silent_p.K263K	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	333	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TATGAATTCTCTTATGTTTAG	0.388													11	57					0	0	0	0
ZNF208	7757	broad.mit.edu	37	19	22155676	22155676	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:22155676G>C	uc002nqp.2	-	5	2009	c.1860C>G	c.(1858-1860)CCC>CCG	p.P620P	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CACATTTGTAGGGTTTCTCTC	0.373													16	77					0	0	0	0
ZNF99	7652	broad.mit.edu	37	19	22942301	22942301	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:22942301C>G	uc010xrh.1	-	4	473	c.473G>C	c.(472-474)TGG>TCG	p.W158S		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GGTAGTTGTCCAACATTGGTT	0.303													7	59					0	0	0	0
ZNF536	9745	broad.mit.edu	37	19	30936467	30936467	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:30936467G>T	uc002nsu.1	+	2	2136	c.1998G>T	c.(1996-1998)GTG>GTT	p.V666V	ZNF536_uc010edd.1_Silent_p.V666V	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	666					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGCTGCACGTGGGCCTGGATG	0.701													13	43					0.00136819	0.0025947	1	0
SBSN	374897	broad.mit.edu	37	19	36018830	36018830	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:36018830C>T	uc002oae.1	-	1	424	c.354G>A	c.(352-354)GGG>GGA	p.G118G	SBSN_uc002oad.1_Silent_p.G118G	NM_198538	NP_940940	Q6UWP8	SBSN_HUMAN	suprabasin isoform 2 precursor	118	Ala/Gly/His-rich.					extracellular region				ovary(1)	1	all_lung(56;1.62e-08)|Lung NSC(56;2.47e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CGTTGTTGACCCCATGGCCAA	0.572													10	154					0	0	0	0
TMEM149	79713	broad.mit.edu	37	19	36231339	36231339	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:36231339C>T	uc002obc.2	-	3	385	c.284G>A	c.(283-285)GGA>GAA	p.G95E	TMEM149_uc002obb.2_Intron|TMEM149_uc002obd.3_Missense_Mutation_p.G95E|TMEM149_uc010xsy.1_RNA|TMEM149_uc010eej.2_Missense_Mutation_p.G175E	NM_024660	NP_078936	Q9H665	IGFR1_HUMAN	transmembrane protein 149 precursor	95	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGTCACGGCTCCGCCGCCGCA	0.687													8	28					0	0	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643946	37643946	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:37643946C>A	uc002ofo.1	-	5	1086	c.855G>T	c.(853-855)TTG>TTT	p.L285F	ZNF585A_uc002ofm.1_Missense_Mutation_p.L230F|ZNF585A_uc002ofn.1_Missense_Mutation_p.L230F	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	285	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GGTGTGCAATCAAATGGGTCT	0.433													45	175					2.13384e-23	5.25391e-23	1	0
SIPA1L3	23094	broad.mit.edu	37	19	38682885	38682885	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:38682885G>A	uc002ohk.2	+	17	5040	c.4531G>A	c.(4531-4533)GAG>AAG	p.E1511K		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1511					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			ATCCACCATCGAGGATGACCT	0.582													16	41					0	0	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38692545	38692545	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:38692545G>C	uc002ohk.2	+	20	5537	c.5028G>C	c.(5026-5028)CTG>CTC	p.L1676L		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1676					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			ACCCGGCCCTGAGCCCGGACA	0.657													4	53					0	0	0	0
RASGRP4	115727	broad.mit.edu	37	19	38903644	38903644	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:38903644G>C	uc002oir.2	-	12	1676	c.1462C>G	c.(1462-1464)CAG>GAG	p.Q488E	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Missense_Mutation_p.Q419E|RASGRP4_uc010xub.1_Missense_Mutation_p.Q454E|RASGRP4_uc010xuc.1_Missense_Mutation_p.Q396E|RASGRP4_uc010xud.1_Missense_Mutation_p.Q391E|RASGRP4_uc010xue.1_Missense_Mutation_p.Q299E|RASGRP4_uc010egb.2_Missense_Mutation_p.Q474E	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	488	EF-hand.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			AAGTCCTCCTGAGAGATTGTT	0.542													16	75					0	0	0	0
PAF1	54623	broad.mit.edu	37	19	39879272	39879272	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:39879272A>T	uc002old.2	-	10	960	c.785T>A	c.(784-786)CTG>CAG	p.L262Q	PAF1_uc002ole.1_Missense_Mutation_p.L252Q|PAF1_uc010xuv.1_RNA|MED29_uc010xuw.1_5'Flank|MED29_uc002olf.2_5'Flank|MED29_uc010xux.1_5'Flank	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	262					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			TTCTACAGGCAGGAAATAGGC	0.527													20	73					0	0	0	0
FCGBP	8857	broad.mit.edu	37	19	40366446	40366446	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:40366446G>A	uc002omp.3	-	30	13796	c.13788C>T	c.(13786-13788)TTC>TTT	p.F4596F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4596	VWFD 11.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCAGGCGCACGAAGCTGTCCC	0.667													12	96					0	0	0	0
LTBP4	8425	broad.mit.edu	37	19	41114228	41114228	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:41114228C>T	uc002ooh.1	+	11	1460	c.1460C>T	c.(1459-1461)TCA>TTA	p.S487L	LTBP4_uc002oog.1_Missense_Mutation_p.S450L|LTBP4_uc002ooi.1_Missense_Mutation_p.S420L|LTBP4_uc002ooj.1_5'Flank|LTBP4_uc010xvo.1_5'Flank	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	487	Pro-rich.				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCCCGAGTGTCACTCAGCCAG	0.662													4	22					0	0	0	0
MIA	8190	broad.mit.edu	37	19	41281750	41281750	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:41281750C>T	uc002opb.3	+	2	369	c.221C>T	c.(220-222)TCC>TTC	p.S74F	MIA_uc010xvt.1_RNA|RAB4B_uc002opc.1_RNA|RAB4B_uc002opd.1_5'Flank|RAB4B_uc002ope.1_5'Flank|EGLN2_uc010ehd.2_5'Flank	NM_006533	NP_006524	Q16674	MIA_HUMAN	melanoma inhibitory activity precursor	74	SH3.				cell proliferation	extracellular space	growth factor activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)	GBM - Glioblastoma multiforme(1328;0.0199)		TATGTCTTCTCCAAGCTGAAG	0.592													11	47					0	0	0	0
GRIK5	2901	broad.mit.edu	37	19	42558056	42558056	+	Missense_Mutation	SNP	C	T	T	rs137900269		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:42558056C>T	uc002osj.1	-	9	1117	c.1082G>A	c.(1081-1083)CGG>CAG	p.R361Q	GRIK5_uc010eib.1_Missense_Mutation_p.R280Q	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	361	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	GAACTCGACCCGCCCGGTCAG	0.637													10	25					0	0	0	0
ZNF234	10780	broad.mit.edu	37	19	44661807	44661807	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:44661807G>A	uc002oym.2	+	6	1945	c.1638G>A	c.(1636-1638)GGG>GGA	p.G546G	ZNF234_uc002oyl.3_Silent_p.G546G	NM_006630	NP_006621	Q14588	ZN234_HUMAN	zinc finger protein 234	546	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				AAGAGTGTGGGAAGAGCTTCA	0.483													16	88					0	0	0	0
ZNF233	353355	broad.mit.edu	37	19	44778176	44778176	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:44778176G>A	uc002oyz.1	+	5	1490	c.1363G>A	c.(1363-1365)GAG>AAG	p.E455K	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Missense_Mutation_p.E270K	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	455	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				ATATAAATGTGAGGTATGTGA	0.403													14	67					0	0	0	0
ZNF285	26974	broad.mit.edu	37	19	44892232	44892232	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:44892232G>T	uc002ozd.3	-	4	262	c.175C>A	c.(175-177)CAG>AAG	p.Q59K	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.Q66K	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	59	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						CCCTTTGCCTGAAGATTCAAA	0.398													11	72					6.40141e-05	0.000126162	1	0
ZNF296	162979	broad.mit.edu	37	19	45575215	45575215	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:45575215C>T	uc002pao.2	-	3	1129	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K		NM_145288	NP_660331	Q8WUU4	ZN296_HUMAN	zinc finger protein 296	358					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTCTTTGTTCCGTGGTGATG	0.652													12	149					0	0	0	0
Unknown	0	broad.mit.edu	37	19	47030233	47030233	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:47030233C>A	uc002pev.1	-	2	415	c.184G>T	c.(184-186)GGC>TGC	p.G62C						SubName: Full=cDNA FLJ37185 fis, clone BRALZ2001743, moderately similar to Serine/threonine-protein phosphatase 5;          EC=3.1.3.16;																		TGCTCGTCGCCTGCGATGGCC	0.582													6	13					0.00116845	0.00222308	1	0
DACT3	147906	broad.mit.edu	37	19	47151869	47151869	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:47151869C>T	uc010ekq.2	-	4	1834	c.1760G>A	c.(1759-1761)GGG>GAG	p.G587E		NM_145056	NP_659493	Q96B18	DACT3_HUMAN	thymus expressed gene 3-like	587											0		Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000173)|all cancers(93;0.000464)|Epithelial(262;0.02)|GBM - Glioblastoma multiforme(486;0.0325)		TGCTCCACCCCCAGAGGCCGC	0.652													29	116					0	0	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969076	47969076	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:47969076C>T	uc002pgx.2	-	2	863	c.585G>A	c.(583-585)CTG>CTA	p.L195L	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Silent_p.L195L	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	195	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		AGAAGACTCTCAGGTGCTTGA	0.552													6	31					0	0	0	0
TPRX1	284355	broad.mit.edu	37	19	48305449	48305449	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:48305449G>C	uc002php.1	-	2	890	c.819C>G	c.(817-819)GCC>GCG	p.A273A		NM_198479	NP_940881	Q8N7U7	TPRX1_HUMAN	tetra-peptide repeat homeobox	273	Gly-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(25;3.02e-09)|all_epithelial(76;7e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000241)|all cancers(93;0.00036)|Epithelial(262;0.0127)|GBM - Glioblastoma multiforme(486;0.048)		CTGGGATCTGGGCTGGGCTGG	0.383													4	18					0	0	0	0
SPACA4	171169	broad.mit.edu	37	19	49110596	49110596	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:49110596C>G	uc002pjo.2	+	1	597	c.361C>G	c.(361-363)CCA>GCA	p.P121A	FAM83E_uc002pjn.2_Intron	NM_133498	NP_598005	Q8TDM5	SACA4_HUMAN	sperm acrosomal membrane protein 14 precursor	121					cell adhesion	acrosomal vesicle|anchored to membrane|plasma membrane				central_nervous_system(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000112)|GBM - Glioblastoma multiforme(486;0.00615)|Epithelial(262;0.0155)		GCTGCTTCCTCCACGTTTGCT	0.637													5	4					0	0	0	0
RUVBL2	10856	broad.mit.edu	37	19	49514288	49514288	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:49514288G>C	uc002plr.1	+	10	833	c.820G>C	c.(820-822)GAG>CAG	p.E274Q	RUVBL2_uc002plq.1_Missense_Mutation_p.E229Q|RUVBL2_uc002pls.1_RNA|RUVBL2_uc010emn.1_Missense_Mutation_p.E229Q|RUVBL2_uc010yac.1_Missense_Mutation_p.E229Q	NM_006666	NP_006657	Q9Y230	RUVB2_HUMAN	RuvB-like 2	274					cellular response to UV|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|protein folding|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex|membrane|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|ATP-dependent DNA helicase activity|damaged DNA binding|identical protein binding|unfolded protein binding				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000449)|OV - Ovarian serous cystadenocarcinoma(262;0.000555)|GBM - Glioblastoma multiforme(486;0.00585)|Epithelial(262;0.047)		AGAAGTCCGTGAGCAGATCAA	0.627													7	52					0	0	0	0
CCDC155	147872	broad.mit.edu	37	19	49912474	49912474	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:49912474G>A	uc002pnm.1	+	14	1254	c.1080G>A	c.(1078-1080)CTG>CTA	p.L360L	CCDC155_uc010emx.1_Silent_p.L333L	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	360						integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						GGGCCCAGCTGAGAAGAGTGG	0.632													5	19					0	0	0	0
ZNF473	25888	broad.mit.edu	37	19	50549315	50549315	+	Silent	SNP	A	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:50549315A>C	uc002prn.2	+	5	1852	c.1615A>C	c.(1615-1617)AGA>CGA	p.R539R	ZNF473_uc002prm.2_Silent_p.R539R|ZNF473_uc010ybo.1_Silent_p.R527R	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	539	Interaction with SLBP/pre-mRNA complex.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		TGTTCACGCCAGAGAAAAACA	0.443													14	49					0	0	0	0
ACPT	93650	broad.mit.edu	37	19	51293713	51293713	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:51293713C>T	uc002pta.1	+	1	42	c.42C>T	c.(40-42)CTC>CTT	p.L14L		NM_033068	NP_149059	Q9BZG2	PPAT_HUMAN	testicular acid phosphatase precursor	14						integral to membrane	acid phosphatase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CTGGACCTCTCctgctgctgc	0.627													3	3					0	0	0	0
SIGLEC12	89858	broad.mit.edu	37	19	51994940	51994940	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:51994940C>A	uc002pwx.1	-	8	1799	c.1743G>T	c.(1741-1743)CAG>CAT	p.Q581H	SIGLEC12_uc002pww.1_Missense_Mutation_p.Q463H|SIGLEC12_uc010eoy.1_Missense_Mutation_p.Q308H	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	581	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CGATGGCCTCCTGTTCCTGTG	0.582													24	100					3.08376e-08	6.5952e-08	1	0
ZNF808	388558	broad.mit.edu	37	19	53058026	53058026	+	Silent	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:53058026A>G	uc010epq.1	+	5	2034	c.1857A>G	c.(1855-1857)GGA>GGG	p.G619G	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	619					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		TTCATACTGGAGAGAAACCAT	0.398													18	63					0	0	0	0
ZNF347	84671	broad.mit.edu	37	19	53643887	53643887	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:53643887T>G	uc002qbb.1	-	5	2263	c.2194A>C	c.(2194-2196)ACT>CCT	p.T732P	ZNF347_uc010eql.1_Missense_Mutation_p.T733P|ZNF347_uc002qbc.1_Missense_Mutation_p.T733P	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	732					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		TTTTTTCCAGTATGGATTGCC	0.433													35	123					0	0	0	0
NLRP12	91662	broad.mit.edu	37	19	54313208	54313208	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:54313208C>T	uc002qch.3	-	3	1925	c.1705G>A	c.(1705-1707)GAG>AAG	p.E569K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.E569K|NLRP12_uc002qcj.3_Missense_Mutation_p.E569K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.E569K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	569					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CTGGTCTCCTCGTTCAGGAGT	0.572													25	72					0	0	0	0
LILRB2	10288	broad.mit.edu	37	19	54782234	54782234	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:54782234C>G	uc002qfb.2	-	7	1404	c.1138G>C	c.(1138-1140)GAA>CAA	p.E380Q	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.E380Q|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.E380Q|LILRB2_uc010yet.1_Missense_Mutation_p.E264Q|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	380	Extracellular (Potential).|Ig-like C2-type 4.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ATGGGGAATTCAGCCTGGTAC	0.577													26	188					0	0	0	0
UBE2S	27338	broad.mit.edu	37	19	55915773	55915773	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:55915773G>A	uc002qkx.1	-	3	593	c.225C>T	c.(223-225)CCC>CCT	p.P75P		NM_014501	NP_055316	Q16763	UBE2S_HUMAN	ubiquitin-conjugating enzyme E2S	75					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|exit from mitosis|free ubiquitin chain polymerization|protein K11-linked ubiquitination|protein K27-linked ubiquitination|protein K29-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination	anaphase-promoting complex	ATP binding|ubiquitin-protein ligase activity				0	Breast(117;0.155)		LUSC - Lung squamous cell carcinoma(43;0.13)|BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.11)		AGTAGCCCTTGGGTGGGGAGG	0.617													5	20					0	0	0	0
NLRP9	338321	broad.mit.edu	37	19	56244612	56244612	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:56244612C>G	uc002qly.2	-	2	613	c.585G>C	c.(583-585)GAG>GAC	p.E195D		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	195	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GTAAGCTGGTCTCTGCGATAC	0.458													7	28					0	0	0	0
NLRP11	204801	broad.mit.edu	37	19	56300718	56300718	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:56300718A>G	uc010ygf.1	-	10	3272	c.2561T>C	c.(2560-2562)ATA>ACA	p.I854T	NLRP11_uc002qlz.2_Missense_Mutation_p.I701T|NLRP11_uc002qmb.2_Missense_Mutation_p.I755T|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	854							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AGCAATAACTATGGCAATATA	0.423													25	115					0	0	0	0
ZNF835	90485	broad.mit.edu	37	19	57176264	57176264	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:57176264C>G	uc010ygo.1	-	2	369	c.369G>C	c.(367-369)GAG>GAC	p.E123D	ZNF835_uc010ygn.1_Missense_Mutation_p.E101D	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						CTCCACCTCTCTCCCGCTGGC	0.642													16	45					0	0	0	0
ZNF264	9422	broad.mit.edu	37	19	57723646	57723646	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:57723646C>T	uc002qob.2	+	4	1594	c.1181C>T	c.(1180-1182)ACT>ATT	p.T394I		NM_003417	NP_003408	O43296	ZN264_HUMAN	zinc finger protein 264	394					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0135)		GTCATCCACACTGGAGAGAAG	0.552													9	56					0	0	0	0
ACP1	52	broad.mit.edu	37	2	271881	271881	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:271881C>T	uc002qwg.2	+	2	155	c.59C>T	c.(58-60)TCA>TTA	p.S20L	ACP1_uc002qwd.2_Missense_Mutation_p.S20L|ACP1_uc002qwe.3_RNA|ACP1_uc002qwh.2_RNA|ACP1_uc002qwf.2_Missense_Mutation_p.S20L	NM_007099	NP_009030	P24666	PPAC_HUMAN	acid phosphatase 1, soluble isoform b	20				CLGNICRS -> PARREAAR (in Ref. 5; AAB27085).		cytoplasm|internal side of plasma membrane|nucleus|soluble fraction	acid phosphatase activity|identical protein binding|non-membrane spanning protein tyrosine phosphatase activity			skin(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00175)|Lung NSC(108;0.216)|all_epithelial(98;0.236)		all cancers(51;0.000391)|Epithelial(75;0.00281)|OV - Ovarian serous cystadenocarcinoma(76;0.00542)|GBM - Glioblastoma multiforme(21;0.127)		ATTTGTCGATCACCCATTGCA	0.448													7	80					0	0	0	0
KIDINS220	57498	broad.mit.edu	37	2	8871289	8871289	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:8871289C>G	uc002qzc.2	-	30	5059	c.4877G>C	c.(4876-4878)CGG>CCG	p.R1626P	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.R1527P|KIDINS220_uc002qzb.2_Missense_Mutation_p.R480P	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1626	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TGGGATTCCCCGCTTTCCGCT	0.483													8	45					0	0	0	0
GEN1	348654	broad.mit.edu	37	2	17954379	17954379	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:17954379G>C	uc002rct.2	+	9	1043	c.970G>C	c.(970-972)GAG>CAG	p.E324Q	SMC6_uc010exo.2_Intron|GEN1_uc010yjs.1_Missense_Mutation_p.E324Q|GEN1_uc002rcu.2_Missense_Mutation_p.E324Q	NM_182625	NP_872431	Q17RS7	GEN_HUMAN	Gen homolog 1, endonuclease	324					DNA repair	nucleus	DNA binding|endonuclease activity|metal ion binding			breast(5)|kidney(1)|central_nervous_system(1)|skin(1)	8	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTGCTGTTGTGAGGGATTCCC	0.214								Homologous_recombination					4	34					0	0	0	0
APOB	338	broad.mit.edu	37	2	21231102	21231102	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:21231102G>A	uc002red.2	-	26	8766	c.8638C>T	c.(8638-8640)CAG>TAG	p.Q2880*		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2880					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGGGTAAGCTGATTGTTTATC	0.408													17	165					0	0	0	0
DNMT3A	1788	broad.mit.edu	37	2	25467409	25467409	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:25467409C>A	uc002rgc.2	-	14	1924	c.1667G>T	c.(1666-1668)AGG>ATG	p.R556M	DNMT3A_uc002rgd.2_Missense_Mutation_p.R556M|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rgb.2_Missense_Mutation_p.R367M	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	556	PHD-type; atypical.|Interaction with the PRC2/EED-EZH2 complex (By similarity).|ADD.				regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACAGCCTCACCTGCAGCAGTT	0.652			Mis|F|N|S		AML								8	41					1.12685e-05	2.25627e-05	1	0
HADHB	3032	broad.mit.edu	37	2	26502173	26502173	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:26502173C>T	uc002rgz.2	+	9	1052	c.801C>T	c.(799-801)TTC>TTT	p.F267F	HADHB_uc010ykv.1_Silent_p.F245F|HADHB_uc010ykw.1_Silent_p.F252F|HADHB_uc002rha.2_Intron|HADHB_uc010ykx.1_Silent_p.F193F	NM_000183	NP_000174	P55084	ECHB_HUMAN	mitochondrial trifunctional protein, beta	267			Missing (in TFP deficiency).		fatty acid beta-oxidation	mitochondrial nucleoid	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acyltransferase activity|enoyl-CoA hydratase activity|protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGTACCCTTCAAAGTACCAG	0.433													6	71					0	0	0	0
IFT172	26160	broad.mit.edu	37	2	27670397	27670397	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:27670397C>G	uc002rku.2	-	42	4695	c.4644G>C	c.(4642-4644)CAG>CAC	p.Q1548H	IFT172_uc010ezb.2_RNA	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1548					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					GTTTGACACTCTGGGCTGCAG	0.498													19	190					0	0	0	0
C2orf71	388939	broad.mit.edu	37	2	29296154	29296154	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:29296154A>G	uc002rmt.1	-	1	974	c.974T>C	c.(973-975)CTG>CCG	p.L325P		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	325					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TAGCTGCCTCAGAGCCCTCAG	0.577													20	89					0	0	0	0
BIRC6	57448	broad.mit.edu	37	2	32735635	32735635	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:32735635C>A	uc010ezu.2	+	53	10414	c.10280C>A	c.(10279-10281)TCT>TAT	p.S3427Y		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	3427					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					AATGGACTCTCTTCTGACTCT	0.343													13	152					8.60227e-14	2.02991e-13	1	0
BIRC6	57448	broad.mit.edu	37	2	32773002	32773002	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:32773002C>T	uc010ezu.2	+	64	13030	c.12896C>T	c.(12895-12897)TCT>TTT	p.S4299F		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4299					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GGAACAGGCTCTACAGCTTCT	0.428													8	31					0	0	0	0
LTBP1	4052	broad.mit.edu	37	2	33482491	33482491	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:33482491C>T	uc002ros.2	+	12	2308	c.2308C>T	c.(2308-2310)CAT>TAT	p.H770Y	LTBP1_uc002rot.2_Missense_Mutation_p.H444Y|LTBP1_uc002rou.2_Missense_Mutation_p.H444Y|LTBP1_uc002rov.2_Intron|LTBP1_uc010ymz.1_Missense_Mutation_p.H444Y|LTBP1_uc010yna.1_Intron	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	770					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TAAAAGTACTCATCCTCCACC	0.547													11	43					0	0	0	0
RASGRP3	25780	broad.mit.edu	37	2	33752432	33752432	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:33752432G>A	uc002rox.2	+	11	1663	c.1036G>A	c.(1036-1038)GCC>ACC	p.A346T	RASGRP3_uc010ync.1_Missense_Mutation_p.A346T|RASGRP3_uc002roy.2_Missense_Mutation_p.A346T	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	346	Ras-GEF.				MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					CCTGCAGAATGCCTCTCACCA	0.468													9	29					0	0	0	0
LRPPRC	10128	broad.mit.edu	37	2	44209515	44209515	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:44209515C>G	uc002rtr.2	-	2	266	c.208G>C	c.(208-210)GAG>CAG	p.E70Q	LRPPRC_uc010yob.1_Intron|LRPPRC_uc010faw.1_Missense_Mutation_p.E44Q	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	70					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GTGGACTCCTCTTGAATATCT	0.383													3	67					0	0	0	0
PSME4	23198	broad.mit.edu	37	2	54148034	54148034	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:54148034G>C	uc002rxp.2	-	18	2310	c.2254C>G	c.(2254-2256)CCT>GCT	p.P752A	PSME4_uc010yop.1_Missense_Mutation_p.P638A|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Missense_Mutation_p.P127A|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	752					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GCCTTGATAGGAAAGTATTCA	0.363													7	66					0	0	0	0
PLEK	5341	broad.mit.edu	37	2	68609701	68609701	+	Silent	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:68609701T>A	uc002sen.3	+	4	570	c.408T>A	c.(406-408)ACT>ACA	p.T136T	PLEK_uc010fde.2_Silent_p.T136T	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	136	DEP.				actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		TGAAAGACACTGAAAAAGGAA	0.348													28	70					0	0	0	0
ALMS1	7840	broad.mit.edu	37	2	73718601	73718601	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:73718601A>G	uc002sje.1	+	12	9629	c.9518A>G	c.(9517-9519)GAG>GGG	p.E3173G	ALMS1_uc002sjf.1_Missense_Mutation_p.E3129G|ALMS1_uc002sjg.2_Missense_Mutation_p.E2559G|ALMS1_uc002sjh.1_Missense_Mutation_p.E2559G	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3171					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TCCAATCCAGAGGGGACCCCA	0.413													3	57					0	0	0	0
ALMS1	7840	broad.mit.edu	37	2	73799886	73799886	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:73799886C>G	uc002sje.1	+	18	10996	c.10885C>G	c.(10885-10887)CGA>GGA	p.R3629G	ALMS1_uc002sjf.1_Missense_Mutation_p.R3585G|ALMS1_uc002sjg.2_Missense_Mutation_p.R3015G|ALMS1_uc002sjh.1_Missense_Mutation_p.R3015G	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3627					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CTTGGTGGACCGACTTGATCG	0.468													16	58					0	0	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746095	77746095	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:77746095C>A	uc002snr.2	-	3	1315	c.900G>T	c.(898-900)TGG>TGT	p.W300C	LRRTM4_uc002snq.2_Missense_Mutation_p.W300C|LRRTM4_uc002sns.2_Missense_Mutation_p.W300C|LRRTM4_uc002snt.2_Missense_Mutation_p.W301C	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	300	Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TTAATGATATCCACGCATTGA	0.373													4	18					2.56e-06	5.24531e-06	1	0
C2orf68	388969	broad.mit.edu	37	2	85836166	85836166	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:85836166C>G	uc002sqc.2	-	4	475	c.403G>C	c.(403-405)GAG>CAG	p.E135Q	USP39_uc002sqb.2_Intron	NM_001013649	NP_001013671	Q2NKX9	CB068_HUMAN	hypothetical protein LOC388969	135										central_nervous_system(1)	1						GACACCTTCTCACTCACCTTT	0.577													5	45					0	0	0	0
SMYD1	150572	broad.mit.edu	37	2	88402603	88402603	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:88402603G>C	uc002ssr.2	+	7	917	c.915G>C	c.(913-915)ATG>ATC	p.M305I	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Missense_Mutation_p.M1I	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	305					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TGAAGGAGATGATACAATTCT	0.453													4	46					0	0	0	0
Unknown	0	broad.mit.edu	37	2	90260092	90260092	+	RNA	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:90260092C>A	uc010fhm.2	+	30		c.4075C>A								Parts of antibodies, mostly variable regions.																		CAGGGAAAGCCCCTGAGCTCC	0.493													31	162					3.90053e-15	9.31675e-15	1	0
INPP4A	3631	broad.mit.edu	37	2	99180077	99180077	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:99180077C>T	uc002syy.2	+	19	2413	c.2020C>T	c.(2020-2022)CGT>TGT	p.R674C	INPP4A_uc010yvj.1_Missense_Mutation_p.R635C|INPP4A_uc010yvk.1_Missense_Mutation_p.R635C|INPP4A_uc002syx.2_Missense_Mutation_p.R669C|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	674					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						GCAGTACCGCCGTGACGTGGT	0.622													5	39					0	0	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105897018	105897018	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:105897018G>A	uc002tcq.2	-	6	1368	c.1284C>T	c.(1282-1284)CTC>CTT	p.L428L	TGFBRAP1_uc010fjc.2_Silent_p.L198L|TGFBRAP1_uc002tcr.3_Silent_p.L428L	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	428					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						GGTAGCTCATGAGGAAGCGTT	0.572													18	80					0	0	0	0
SH3RF3	344558	broad.mit.edu	37	2	109988086	109988086	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:109988086G>T	uc010ywt.1	+	3	894	c.894G>T	c.(892-894)GCG>GCT	p.A298A		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	298	SH3 2.						zinc ion binding			ovary(1)	1						AGAACTGGGCGGAAGGCATGC	0.577													9	35					1.76689e-08	3.79731e-08	1	0
MYO7B	4648	broad.mit.edu	37	2	128335742	128335742	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:128335742C>T	uc002top.2	+	9	937	c.884C>T	c.(883-885)GCC>GTC	p.A295V		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	295	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CTCAACGACGCCAAGGACTAC	0.632													10	20					0	0	0	0
FAM123C	205147	broad.mit.edu	37	2	131520753	131520753	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:131520753G>C	uc002trw.2	+	2	1298	c.1108G>C	c.(1108-1110)GGC>CGC	p.G370R	FAM123C_uc010fmv.2_Missense_Mutation_p.G370R|FAM123C_uc010fms.1_Missense_Mutation_p.G370R|FAM123C_uc010fmt.1_Missense_Mutation_p.G370R|FAM123C_uc010fmu.1_Missense_Mutation_p.G370R	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	370										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CATCGACACAGGCACCCCCAA	0.627													6	35					0	0	0	0
Unknown	0	broad.mit.edu	37	2	139045610	139045610	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:139045610C>T	uc010zbk.1	-	1	831	c.688G>A	c.(688-690)GAC>AAC	p.D230N						SubName: Full=cDNA, FLJ79100, highly similar to 14-3-3 protein epsilon (14-3-3E);																		TGATTTTTGTCTTCCACGTCC	0.478													6	54					0	0	0	0
ZEB2	9839	broad.mit.edu	37	2	145147399	145147399	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:145147399C>T	uc002tvu.2	-	10	3744	c.3264G>A	c.(3262-3264)CGG>CGA	p.R1088R	ZEB2_uc002tvv.2_Silent_p.R1082R|ZEB2_uc010zbm.1_Silent_p.R1059R|ZEB2_uc010fnp.2_Intron	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	1088	Glu-rich (acidic).					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		CCGCCGCTTCCCGCTCCTCCG	0.592													8	68					0	0	0	0
NMI	9111	broad.mit.edu	37	2	152138558	152138558	+	Splice_Site	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:152138558C>T	uc002txi.2	-	3	412	c.82_splice	c.e3-1	p.G28_splice	NMI_uc010zbx.1_Splice_Site_p.G28_splice|NMI_uc002txj.2_Intron	NM_004688	NP_004679	Q13287	NMI_HUMAN	N-myc and STAT interactor						inflammatory response|JAK-STAT cascade|transcription from RNA polymerase II promoter	cytoplasm|nucleus	nucleotide binding|protein binding|transcription cofactor activity				0				BRCA - Breast invasive adenocarcinoma(221;0.0571)		CAATTAGTCCCTTAAAAATAT	0.333													5	16					0	0	0	0
BAZ2B	29994	broad.mit.edu	37	2	160294955	160294955	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:160294955C>G	uc002uao.2	-	8	1504	c.1152G>C	c.(1150-1152)GTG>GTC	p.V384V	BAZ2B_uc002uap.2_Silent_p.V382V|BAZ2B_uc002uas.1_Silent_p.V321V|BAZ2B_uc002uau.1_Silent_p.V382V|BAZ2B_uc002uaq.1_Silent_p.V312V|BAZ2B_uc002uat.3_3'UTR|BAZ2B_uc010fop.1_Silent_p.V382V	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	384					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						ATAAAGGTTTCACATTGGACA	0.393													22	62					0	0	0	0
ITGB6	3694	broad.mit.edu	37	2	160994114	160994114	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:160994114C>G	uc002ubh.2	-	10	1507	c.1491G>C	c.(1489-1491)CTG>CTC	p.L497L	ITGB6_uc010fou.2_Silent_p.L497L|ITGB6_uc010zcq.1_Silent_p.L455L|ITGB6_uc010fov.1_Silent_p.L497L	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	497	Extracellular (Potential).|Cysteine-rich tandem repeats.|I.				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						AATCTGTGCTCAGCATGTCCT	0.602													4	55					0	0	0	0
SLC4A10	57282	broad.mit.edu	37	2	162711549	162711549	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:162711549T>C	uc002ubx.3	+	5	670	c.486T>C	c.(484-486)CTT>CTC	p.L162L	SLC4A10_uc010fpa.1_Silent_p.L174L|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Silent_p.L162L|SLC4A10_uc010zcs.1_Silent_p.L173L	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	162	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TGGCTACTCTTTCATTGCACA	0.388													7	50					0	0	0	0
DPP4	1803	broad.mit.edu	37	2	162891810	162891810	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:162891810G>C	uc002ubz.2	-	9	1199	c.638C>G	c.(637-639)GCT>GGT	p.A213G	DPP4_uc010fpb.2_5'UTR	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	213	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	CCACCACAGAGCAGAGTAGGC	0.398													9	42					0	0	0	0
SCN9A	6335	broad.mit.edu	37	2	167159754	167159754	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:167159754C>A	uc010fpl.2	-	7	1088	c.747G>T	c.(745-747)ATG>ATT	p.M249I	SCN9A_uc002udr.1_Missense_Mutation_p.M120I|SCN9A_uc002uds.1_Missense_Mutation_p.M120I|SCN9A_uc002udt.1_Missense_Mutation_p.M120I	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	249	Helical; Name=S5 of repeat I; (Potential).|I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CAGTCAGGATCATGACATCAG	0.393													6	30					0.00198382	0.003734	1	0
ABCB11	8647	broad.mit.edu	37	2	169791840	169791840	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:169791840G>T	uc002ueo.1	-	23	3036	c.2910C>A	c.(2908-2910)CCC>CCA	p.P970P	ABCB11_uc010zda.1_Silent_p.P412P|ABCB11_uc010zdb.1_Silent_p.P446P	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	970	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTGTCTTGAAGGGCTTCTCCA	0.453													31	124					1.75199e-13	4.11214e-13	1	0
LRP2	4036	broad.mit.edu	37	2	169989114	169989114	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:169989114G>A	uc002ues.2	-	77	13911	c.13698C>T	c.(13696-13698)AAC>AAT	p.N4566N		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4566	Cytoplasmic (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GTGAAGTTGGGTTTGTCTCTG	0.408													23	66					0	0	0	0
WIPF1	7456	broad.mit.edu	37	2	175436931	175436931	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:175436931C>A	uc002uiy.2	-	6	934	c.602G>T	c.(601-603)CGG>CTG	p.R201L	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Missense_Mutation_p.R201L|WIPF1_uc010fqt.1_Missense_Mutation_p.R201L|WIPF1_uc002ujc.1_Missense_Mutation_p.R201L|WIPF1_uc002uiz.2_Missense_Mutation_p.R201L|WIPF1_uc002ujb.1_Missense_Mutation_p.R201L|WIPF1_uc010zep.1_Missense_Mutation_p.R201L	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	201					actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						TGGGGACCCCCGGTTGTGCGG	0.652													18	70					1.28384e-07	2.70622e-07	1	0
TTN	7273	broad.mit.edu	37	2	179614079	179614079	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:179614079T>C	uc002unb.2	-	46	13272	c.13048A>G	c.(13048-13050)ATC>GTC	p.I4350V	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGCCCTGATGGGCTTGCTG	0.423													18	99					0	0	0	0
MSTN	2660	broad.mit.edu	37	2	190926956	190926956	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:190926956T>C	uc002urp.2	-	1	500	c.367A>G	c.(367-369)ACA>GCA	p.T123A		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	123					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TTACACTCTGTAGGCATGGTA	0.398													25	54					0	0	0	0
MYO1B	4430	broad.mit.edu	37	2	192273886	192273886	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:192273886G>C	uc010fsg.2	+	26	3003	c.2748G>C	c.(2746-2748)AGG>AGC	p.R916S	MYO1B_uc002usq.2_Missense_Mutation_p.R858S|MYO1B_uc002usr.2_Missense_Mutation_p.R916S|MYO1B_uc002usu.2_Missense_Mutation_p.R161S|MYO1B_uc002usv.2_Missense_Mutation_p.R32S	NM_001130158	NP_001123630	O43795	MYO1B_HUMAN	myosin IB isoform 1	916						myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(5)|large_intestine(2)|ovary(1)	8			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.104)|all cancers(119;0.236)			AGCTAAAAAGGATTTTCCACT	0.323													16	74					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196729351	196729351	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:196729351C>T	uc002utj.3	-	41	7129	c.7028G>A	c.(7027-7029)GGA>GAA	p.G2343E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2343	ATP (Potential).|AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCCACTCCCTCCAACCCCTAC	0.483													4	52					0	0	0	0
SATB2	23314	broad.mit.edu	37	2	200137230	200137230	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:200137230C>A	uc002uuy.1	-	11	2723	c.1906G>T	c.(1906-1908)GTA>TTA	p.V636L	SATB2_uc010fsq.1_Missense_Mutation_p.V518L|SATB2_uc002uuz.1_Missense_Mutation_p.V636L|SATB2_uc002uva.1_Missense_Mutation_p.V636L	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	636	Homeobox.					cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						TACAGGCCTACATCATGAATA	0.532													13	67					0.00010058	0.000196248	1	0
ALS2CR11	151254	broad.mit.edu	37	2	202400908	202400908	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:202400908T>G	uc002uye.2	-	13	1390	c.1342A>C	c.(1342-1344)ATT>CTT	p.I448L	ALS2CR11_uc002uyf.2_Missense_Mutation_p.I448L|ALS2CR11_uc010fti.2_Intron	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	448										large_intestine(1)|ovary(1)|skin(1)	3						TGGTTAGAAATAGTGCACAAT	0.383													21	113					0	0	0	0
WDR12	55759	broad.mit.edu	37	2	203748374	203748374	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:203748374G>A	uc002uzl.2	-	11	1829	c.1079C>T	c.(1078-1080)TCA>TTA	p.S360L	WDR12_uc010ftt.2_Missense_Mutation_p.S360L	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	360	WD 6.|Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						TAAAGATCCTGAAATCAGCTG	0.378													6	38					0	0	0	0
PTH2R	5746	broad.mit.edu	37	2	209308194	209308194	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:209308194G>T	uc002vdb.2	+	6	844	c.631G>T	c.(631-633)GAG>TAG	p.E211*	PTH2R_uc010zjb.1_Nonsense_Mutation_p.E222*	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	211	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		AAAGGAGCTGGAGTCCCTAAT	0.398													12	51					4.36969e-10	9.73627e-10	1	0
VWC2L	402117	broad.mit.edu	37	2	215301378	215301378	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:215301378G>C	uc002vet.2	+	3	546	c.416G>C	c.(415-417)TGT>TCT	p.C139S	VWC2L_uc010zjl.1_Intron	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	139	VWFC 2.					extracellular region					0						TGGTGTCGCTGTGAGCCCAGC	0.448													13	41					0	0	0	0
ABCA12	26154	broad.mit.edu	37	2	215854053	215854053	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:215854053C>T	uc002vew.2	-	26	4049	c.3829G>A	c.(3829-3831)GGG>AGG	p.G1277R	ABCA12_uc002vev.2_Missense_Mutation_p.G959R|ABCA12_uc010zjn.1_Missense_Mutation_p.G204R	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1277					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		ACATTCATACCTGGGAAGACA	0.328													5	26					0	0	0	0
PECR	55825	broad.mit.edu	37	2	216904001	216904001	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:216904001G>C	uc002vft.2	-	8	977	c.909C>G	c.(907-909)CTC>CTG	p.L303L	PECR_uc010zjq.1_RNA|PECR_uc002vfr.2_Silent_p.L165L|PECR_uc002vfs.2_Silent_p.L157L	NM_018441	NP_060911	Q9BY49	PECR_HUMAN	peroxisomal trans-2-enoyl-CoA reductase	303	Microbody targeting signal.			Missing: Abolishes localization to peroxisomes.	fatty acid biosynthetic process|regulation of apoptosis	peroxisome	binding|trans-2-enoyl-CoA reductase (NADPH) activity				0		Renal(323;0.0327)		Epithelial(149;3.8e-06)|all cancers(144;0.000272)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Adenine(DB00173)	CCTCAGCTCAGAGCTTAGCTT	0.433													19	83					0	0	0	0
CCDC108	255101	broad.mit.edu	37	2	219873820	219873820	+	Silent	SNP	G	A	A	rs149741043		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:219873820G>A	uc002vjl.1	-	29	4707	c.4623C>T	c.(4621-4623)GAC>GAT	p.D1541D		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1541	Potential.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCACCTTCTCGTCCTTCCACT	0.547													17	57					0	0	0	0
KCNJ13	3769	broad.mit.edu	37	2	233635666	233635666	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:233635666G>A	uc002vto.2	-	1	450	c.407C>T	c.(406-408)GCC>GTC	p.A136V	GIGYF2_uc010zmj.1_Intron|GIGYF2_uc002vtg.2_Intron|GIGYF2_uc002vtj.3_Intron|GIGYF2_uc002vti.3_Intron|GIGYF2_uc002vtk.3_Intron|GIGYF2_uc002vth.3_Intron|GIGYF2_uc010zmk.1_Intron|GIGYF2_uc010zml.1_Intron|KCNJ13_uc002vtn.2_Intron|KCNJ13_uc002vtp.2_Missense_Mutation_p.A136V	NM_002242	NP_002233	O60928	IRK13_HUMAN	potassium inwardly-rectifying channel J13	136	Helical; Name=M2; (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity				0		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0306)|Lung NSC(271;0.0908)		Epithelial(121;5.9e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0617)		GGCAAGTAAGGCGATTGCACT	0.393													12	50					0	0	0	0
SPP2	6694	broad.mit.edu	37	2	234969088	234969088	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:234969088T>A	uc002vvk.1	+	4	494	c.409T>A	c.(409-411)TCC>ACC	p.S137T	SPP2_uc010fyl.1_Missense_Mutation_p.S57T	NM_006944	NP_008875	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa precursor	137					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity				0		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		CTGCAGCTGGTCCTCCTCCAC	0.562													14	54					0	0	0	0
KIF1A	547	broad.mit.edu	37	2	241727548	241727548	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:241727548C>T	uc002vzy.2	-	4	429	c.283G>A	c.(283-285)GCC>ACC	p.A95T	KIF1A_uc010fzk.2_Missense_Mutation_p.A95T|KIF1A_uc002vzz.1_Missense_Mutation_p.A95T	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	95	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		TGCCCATAGGCGAAGATGCAC	0.617													5	13					0	0	0	0
PASK	23178	broad.mit.edu	37	2	242054809	242054809	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:242054809T>C	uc002wao.1	-	13	3184	c.3092A>G	c.(3091-3093)AAG>AGG	p.K1031R	PASK_uc010zol.1_Missense_Mutation_p.K845R|PASK_uc010zom.1_Missense_Mutation_p.K996R|PASK_uc010fzl.1_Missense_Mutation_p.K1031R|PASK_uc010zon.1_Missense_Mutation_p.K812R|PASK_uc002wap.2_Missense_Mutation_p.K574R|PASK_uc002waq.2_Missense_Mutation_p.K1031R	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	1031	Protein kinase.				regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		CTTCTCCTTCTTAATAAACTT	0.493													15	48					0	0	0	0
SIRPG	55423	broad.mit.edu	37	20	1616920	1616920	+	Missense_Mutation	SNP	C	T	T	rs148726891		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:1616920C>T	uc002wfm.1	-	3	727	c.662G>A	c.(661-663)CGC>CAC	p.R221H	SIRPG_uc002wfn.1_Missense_Mutation_p.R221H|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	221	Extracellular (Potential).|Ig-like C1-type 1.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GACCTGAGAGCGAACGTCCCA	0.617													21	75					0	0	0	0
VPS16	64601	broad.mit.edu	37	20	2842527	2842527	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:2842527T>G	uc002whe.2	+	10	1024	c.976T>G	c.(976-978)TTC>GTC	p.F326V	VPS16_uc002whh.2_5'Flank|PTPRA_uc002whj.2_5'Flank|VPS16_uc002whf.2_Intron|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_5'Flank|VPS16_uc002whi.2_5'Flank	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	326					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						CACCCACGAGTTCCTGCATGA	0.612													10	19					0	0	0	0
PLCB4	5332	broad.mit.edu	37	20	9416221	9416221	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:9416221T>G	uc002wnf.2	+	27	2639	c.2503T>G	c.(2503-2505)TTA>GTA	p.L835V	PLCB4_uc010gbw.1_Missense_Mutation_p.L835V|PLCB4_uc010gbx.2_Missense_Mutation_p.L847V|PLCB4_uc002wne.2_Missense_Mutation_p.L835V|PLCB4_uc002wnh.2_Missense_Mutation_p.L682V	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	835					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CGTGGATGCTTTATCAGATCC	0.338													11	65					0	0	0	0
ITCH	83737	broad.mit.edu	37	20	33068494	33068494	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:33068494G>C	uc010geu.1	+	20	2224	c.2032G>C	c.(2032-2034)GAA>CAA	p.E678Q	ITCH_uc002xak.2_Missense_Mutation_p.E637Q|ITCH_uc010zuj.1_Missense_Mutation_p.E527Q	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	678	HECT.				apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						CAAGGATTTAGAATCTATTGA	0.323													18	43					0	0	0	0
GGT7	2686	broad.mit.edu	37	20	33440233	33440233	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:33440233C>A	uc002xay.2	-	11	1471	c.1428G>T	c.(1426-1428)GTG>GTT	p.V476V	GGT7_uc010gex.2_5'Flank|GGT7_uc002xaz.1_Silent_p.V493V	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	476	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						CCATGATCAGCACCTGGGCAG	0.592													21	68					5.35356e-11	1.20816e-10	1	0
GDF5	8200	broad.mit.edu	37	20	34022553	34022553	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:34022553C>G	uc002xck.1	-	2	979	c.660G>C	c.(658-660)CAG>CAC	p.Q220H	GDF5_uc010gfc.1_Missense_Mutation_p.Q220H|uc002xcj.2_Missense_Mutation_p.L322V|GDF5_uc010zvc.1_Missense_Mutation_p.Q220H	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	220					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			ACACGTACCTCTGCTTCCTGA	0.612													13	130					0	0	0	0
C20orf117	140710	broad.mit.edu	37	20	35441119	35441119	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:35441119G>A	uc002xgd.1	-	6	2058	c.1731C>T	c.(1729-1731)TCC>TCT	p.S577S	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	577											0		Myeloproliferative disorder(115;0.00874)				CAGAGGCATAGGAATCATTGT	0.562													6	40					0	0	0	0
BPI	671	broad.mit.edu	37	20	36948668	36948668	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:36948668C>A	uc002xib.2	+	7	822	c.760C>A	c.(760-762)CAG>AAG	p.Q254K		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	254					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				CCTGGATGTACAGATGAAGGT	0.468													6	25					0.00116845	0.00222308	1	0
SLC32A1	140679	broad.mit.edu	37	20	37356754	37356754	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:37356754C>A	uc002xjc.2	+	2	1313	c.1050C>A	c.(1048-1050)CTC>CTA	p.L350L		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	350	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	CCTGCGTGCTCAAGGGCCTCT	0.617													8	42					1.12685e-05	2.25627e-05	1	0
ZHX3	23051	broad.mit.edu	37	20	39832463	39832463	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:39832463G>C	uc002xjs.1	-	3	1472	c.1094C>G	c.(1093-1095)CCT>CGT	p.P365R	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Missense_Mutation_p.P365R|ZHX3_uc002xjt.1_Missense_Mutation_p.P365R|ZHX3_uc002xju.1_Missense_Mutation_p.P365R|ZHX3_uc002xjv.1_Missense_Mutation_p.P365R|ZHX3_uc002xjw.1_Missense_Mutation_p.P365R|ZHX3_uc010ggg.1_Missense_Mutation_p.P365R	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	365	Required for homodimerization and interaction with NFYA.|Required for repressor activity.				negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				AATCTCCTCAGGGGACCAGCT	0.517													16	54					0	0	0	0
TOX2	84969	broad.mit.edu	37	20	42635314	42635314	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:42635314G>T	uc002xlf.3	+	3	337	c.320G>T	c.(319-321)GGC>GTC	p.G107V	TOX2_uc010ggo.2_Missense_Mutation_p.G98V|TOX2_uc002xle.3_Missense_Mutation_p.G56V|TOX2_uc010ggp.2_Missense_Mutation_p.G56V|TOX2_uc002xlg.2_Missense_Mutation_p.G56V	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	107	Required for transcriptional activation (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CTGTGCCACGGCCTCACCCCC	0.622													12	66					4.36969e-10	9.73627e-10	1	0
JPH2	57158	broad.mit.edu	37	20	42743470	42743470	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:42743470C>T	uc002xli.1	-	5	2930	c.2057G>A	c.(2056-2058)GGC>GAC	p.G686D		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	686	Helical; Anchor for type IV membrane protein; (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GATGGCCAGGCCGATGTTCAG	0.637													4	19					0	0	0	0
ZMYND8	23613	broad.mit.edu	37	20	45865143	45865143	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:45865143G>A	uc002xta.1	-	16	2977	c.2723C>T	c.(2722-2724)TCA>TTA	p.S908L	ZMYND8_uc010ghq.1_Missense_Mutation_p.S539L|ZMYND8_uc010ghr.1_Missense_Mutation_p.S837L|ZMYND8_uc002xst.1_Missense_Mutation_p.S790L|ZMYND8_uc002xsu.1_Missense_Mutation_p.S781L|ZMYND8_uc002xsv.1_Missense_Mutation_p.S836L|ZMYND8_uc002xsw.1_Missense_Mutation_p.S614L|ZMYND8_uc002xsx.1_Missense_Mutation_p.S614L|ZMYND8_uc002xsy.1_Missense_Mutation_p.S837L|ZMYND8_uc002xsz.1_Missense_Mutation_p.S799L|ZMYND8_uc010zxy.1_Missense_Mutation_p.S935L|ZMYND8_uc002xtb.1_Missense_Mutation_p.S882L|ZMYND8_uc002xss.2_Missense_Mutation_p.S908L|ZMYND8_uc010zxz.1_Missense_Mutation_p.S776L|ZMYND8_uc002xtc.1_Missense_Mutation_p.S882L|ZMYND8_uc002xtd.1_Missense_Mutation_p.S857L|ZMYND8_uc002xte.1_Missense_Mutation_p.S862L|ZMYND8_uc010zya.1_Missense_Mutation_p.S908L|ZMYND8_uc002xtf.1_Missense_Mutation_p.S928L|ZMYND8_uc002xsr.1_Missense_Mutation_p.S7L	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	908							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			AGCGTTGACTGAGGACACAAG	0.587													11	97					0	0	0	0
C20orf177	63939	broad.mit.edu	37	20	58519303	58519303	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:58519303G>A	uc002yba.2	+	5	720	c.305G>A	c.(304-306)AGA>AAA	p.R102K	C20orf177_uc010zzx.1_Intron|C20orf177_uc002ybc.2_Missense_Mutation_p.R102K	NM_022106	NP_071389	Q9NTX9	CT177_HUMAN	hypothetical protein LOC63939	102										ovary(2)|breast(1)	3	all_lung(29;0.00693)		BRCA - Breast invasive adenocarcinoma(7;1.22e-08)			GATTCGGAAAGAATTCCCATT	0.433													7	41					0	0	0	0
SS18L1	26039	broad.mit.edu	37	20	60733801	60733801	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:60733801C>T	uc002ycb.2	+	2	198	c.143C>T	c.(142-144)ACG>ATG	p.T48M	SS18L1_uc011aaa.1_Missense_Mutation_p.T48M|SS18L1_uc002ybz.1_RNA|SS18L1_uc002yca.1_RNA|SS18L1_uc002ycc.1_5'Flank	NM_198935	NP_945173	O75177	CREST_HUMAN	SS18-like protein 1	48	N-terminal auto-inhibitory domain; necessary for interaction with SMARCA4/BRG1 (By similarity).				chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed chromosome kinetochore				ovary(2)	2	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.92e-08)			GCCGAGTGCACGCAGTGAGTG	0.607			T	SSX1	synovial sarcoma								9	86					0	0	0	0
TCFL5	10732	broad.mit.edu	37	20	61488904	61488904	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:61488904C>T	uc002ydp.2	-	4	1174	c.1081G>A	c.(1081-1083)GAG>AAG	p.E361K	TCFL5_uc002ydo.2_Missense_Mutation_p.E134K|TCFL5_uc002ydq.2_Missense_Mutation_p.E360K	NM_006602	NP_006593	Q9UL49	TCFL5_HUMAN	transcription factor-like 5 protein	361					cell differentiation|multicellular organismal development|regulation of cell differentiation|regulation of cell proliferation|spermatogenesis|transcription from RNA polymerase II promoter		DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)	1	Breast(26;5.68e-08)					TTCTGAATCTCTCCAAGGGCT	0.562													9	97					0	0	0	0
DIDO1	11083	broad.mit.edu	37	20	61511825	61511825	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:61511825G>A	uc002ydr.1	-	16	5747	c.5483C>T	c.(5482-5484)CCC>CTC	p.P1828L	DIDO1_uc002yds.1_Missense_Mutation_p.P1828L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1828	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					AAGGTAAGAGGGTGAGGGGCC	0.602													19	75					0	0	0	0
TPTE	7179	broad.mit.edu	37	21	10996075	10996075	+	RNA	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr21:10996075C>G	uc002yis.1	-	12		c.2111G>C						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTTTTCTGATCACAGATCTTT	0.373													3	31					0	0	0	0
KRTAP13-4	284827	broad.mit.edu	37	21	31802642	31802642	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr21:31802642G>T	uc011acw.1	+	1	49	c.49G>T	c.(49-51)GGC>TGC	p.G17C		NM_181600	NP_853631	Q3LI77	KR134_HUMAN	keratin associated protein 13-4	17						intermediate filament					0						CTCCTTTGGGGGCTACCTGTA	0.552													26	72					4.59853e-10	1.02332e-09	1	0
DSCAM	1826	broad.mit.edu	37	21	41719757	41719757	+	Silent	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr21:41719757A>G	uc002yyq.1	-	6	1502	c.1050T>C	c.(1048-1050)AAT>AAC	p.N350N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	350	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGATTTCACCATTGCGGTACC	0.507													33	105					0	0	0	0
ZNF295	49854	broad.mit.edu	37	21	43413920	43413920	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr21:43413920C>G	uc002zab.3	-	3	499	c.285G>C	c.(283-285)GAG>GAC	p.E95D	ZNF295_uc002yzz.3_Missense_Mutation_p.E95D|ZNF295_uc002yzy.3_Missense_Mutation_p.E95D|ZNF295_uc002zaa.3_Missense_Mutation_p.E95D|ZNF295_uc010gov.1_Missense_Mutation_p.E95D|ZNF295_uc002zac.2_Missense_Mutation_p.E95D	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	95	Mediates homodimerization.|BTB.				negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GGCTGCTCTTCTCAACAAATA	0.398													6	31					0	0	0	0
ZNF295	49854	broad.mit.edu	37	21	43414197	43414197	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr21:43414197C>G	uc002zab.3	-	3	222	c.8G>C	c.(7-9)GGA>GCA	p.G3A	ZNF295_uc002yzz.3_Missense_Mutation_p.G3A|ZNF295_uc002yzy.3_Missense_Mutation_p.G3A|ZNF295_uc002zaa.3_Missense_Mutation_p.G3A|ZNF295_uc010gov.1_Missense_Mutation_p.G3A|ZNF295_uc002zac.2_Missense_Mutation_p.G3A	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	3					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						ATGCAGTAATCCCTCCATGGC	0.373													10	84					0	0	0	0
SLC19A1	6573	broad.mit.edu	37	21	46945761	46945761	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr21:46945761C>A	uc002zhl.1	-	5	1382	c.1263G>T	c.(1261-1263)GTG>GTT	p.V421V	SLC19A1_uc010gpy.1_Silent_p.V421V|SLC19A1_uc011aft.1_Silent_p.V381V|SLC19A1_uc002zhm.1_Silent_p.V421V|SLC19A1_uc010gpz.1_Silent_p.V300V	NM_194255	NP_919231	P41440	S19A1_HUMAN	solute carrier family 19 member 1	421	Extracellular (Probable).				folic acid metabolic process	integral to plasma membrane|membrane fraction	folic acid binding|folic acid transporter activity|methotrexate transporter activity|reduced folate carrier activity				0				Colorectal(79;0.0569)|READ - Rectum adenocarcinoma(84;0.172)		CCAGGCCCCGCACGTCCGAGA	0.582													20	59					4.35082e-09	9.50153e-09	1	0
CCT8L2	150160	broad.mit.edu	37	22	17072993	17072993	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr22:17072993G>T	uc002zlp.1	-	1	708	c.448C>A	c.(448-450)CTG>ATG	p.L150M		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	150					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TGGATGGCCAGGGAGGGCAGT	0.637													26	48					2.12542e-12	4.93591e-12	1	0
RGL4	266747	broad.mit.edu	37	22	24039430	24039430	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr22:24039430G>C	uc002zxn.2	+	8	2404	c.1234G>C	c.(1234-1236)GAT>CAT	p.D412H	LOC91316_uc002zxk.3_Intron|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_Intron|LOC91316_uc002zxm.3_Intron|RGL4_uc002zxo.2_Missense_Mutation_p.D412H|RGL4_uc002zxp.1_Missense_Mutation_p.D276H|RGL4_uc002zxq.2_Missense_Mutation_p.D276H	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	412	Ras-GEF.				small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						GGACGACCTGGATGTGAGTGA	0.607													6	81					0	0	0	0
SMTN	6525	broad.mit.edu	37	22	31492986	31492986	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr22:31492986G>A	uc003ajl.1	+	15	2247	c.2029G>A	c.(2029-2031)GAT>AAT	p.D677N	SMTN_uc003ajk.1_Missense_Mutation_p.D677N|SMTN_uc003ajm.1_Missense_Mutation_p.D677N|SMTN_uc011ale.1_Missense_Mutation_p.D762N|SMTN_uc011alf.1_Missense_Mutation_p.D733N|SMTN_uc003ajn.1_Missense_Mutation_p.D700N|SMTN_uc011alg.1_Missense_Mutation_p.D133N|SMTN_uc003ajo.1_Intron|SMTN_uc010gwe.1_Intron	NM_006932	NP_008863	P53814	SMTN_HUMAN	smoothelin isoform c	677					muscle organ development|smooth muscle contraction	actin cytoskeleton|cytoplasm	actin binding|structural constituent of muscle			large_intestine(2)|pancreas(1)	3						CCCTGCAGATGATGGCACACG	0.657													5	42					0	0	0	0
APOL2	23780	broad.mit.edu	37	22	36629289	36629289	+	Splice_Site	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr22:36629289T>C	uc003aoz.2	-	3	258	c.-78_splice	c.e3-1		APOL2_uc011amm.1_Splice_Site_p.R86_splice|APOL2_uc003apa.2_Splice_Site	NM_030882	NP_112092	Q9BQE5	APOL2_HUMAN	apolipoprotein L2						acute-phase response|cholesterol metabolic process|lipid transport|lipoprotein metabolic process|maternal process involved in female pregnancy|multicellular organismal development	endoplasmic reticulum membrane|extracellular region	high-density lipoprotein particle binding|lipid binding|receptor binding				0						TCCTTAACCCTTGAGAACGAG	0.567													30	38					0	0	0	0
ENTHD1	150350	broad.mit.edu	37	22	40283410	40283410	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr22:40283410C>G	uc003ayg.2	-	2	594	c.343G>C	c.(343-345)GAC>CAC	p.D115H		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	115	ENTH.									ovary(2)|skin(1)	3	Melanoma(58;0.0749)					TTACCTTGGTCTTTTCCAGCT	0.229													4	72					0	0	0	0
MPPED1	758	broad.mit.edu	37	22	43830958	43830958	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr22:43830958G>C	uc011apv.1	+	3	452	c.229G>C	c.(229-231)GAC>CAC	p.D77H	MPPED1_uc011apw.1_5'UTR|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Missense_Mutation_p.D77H|MPPED1_uc011apz.1_Missense_Mutation_p.D110H	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	77							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				CTGCAGGGTGGACCCGGTGCC	0.657													14	130					0	0	0	0
PNPLA3	80339	broad.mit.edu	37	22	44340664	44340664	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr22:44340664C>T	uc003bei.1	+	8	1379	c.1206C>T	c.(1204-1206)CTC>CTT	p.L402L	PNPLA3_uc010gzm.1_RNA	NM_025225	NP_079501	Q9NST1	PLPL3_HUMAN	patatin-like phospholipase domain containing 3	402	Lumenal (Potential).				triglyceride biosynthetic process|triglyceride catabolic process	integral to membrane	diolein transacylation activity|mono-olein transacylation activity|phospholipase A2 activity|triglyceride lipase activity				0		Ovarian(80;0.024)|all_neural(38;0.0416)				TGTGTCTGCTCCCCGCCTCCA	0.567													6	90					0	0	0	0
ITPR1	3708	broad.mit.edu	37	3	4847887	4847887	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:4847887A>G	uc003bqa.2	+	52	7412	c.7064A>G	c.(7063-7065)CAT>CGT	p.H2355R	ITPR1_uc010hca.1_Missense_Mutation_p.H2340R|ITPR1_uc011asu.1_Missense_Mutation_p.H366R|ITPR1_uc003bqc.2_Missense_Mutation_p.H1325R|ITPR1_uc010hcc.1_Missense_Mutation_p.H123R|ITPR1_uc011asv.1_Missense_Mutation_p.H79R	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2403	Lumenal (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TTCCTCTATCATTTGTTGTAT	0.443													22	35					0	0	0	0
OGG1	4968	broad.mit.edu	37	3	9796474	9796474	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:9796474G>C	uc003bsi.2	+	4	995	c.652G>C	c.(652-654)GAA>CAA	p.E218Q	OGG1_uc003bsh.2_Missense_Mutation_p.E218Q|OGG1_uc003bsj.2_Missense_Mutation_p.E218Q|OGG1_uc003bsk.2_Missense_Mutation_p.E218Q|OGG1_uc003bsl.2_Missense_Mutation_p.E218Q|OGG1_uc003bsm.2_Missense_Mutation_p.E218Q|OGG1_uc003bsn.2_Missense_Mutation_p.E218Q|OGG1_uc003bso.2_Intron|OGG1_uc003bsp.1_Intron|OGG1_uc010hcm.1_Missense_Mutation_p.E61Q|OGG1_uc003bsq.1_Intron|OGG1_uc003bsr.1_Intron	NM_002542	NP_002533	O15527	OGG1_HUMAN	8-oxoguanine DNA-glycosylase 1 isoform 1a	218					depurination|nucleotide-excision repair|regulation of protein import into nucleus, translocation|regulation of transcription, DNA-dependent|response to oxidative stress|response to radiation	mitochondrion|nuclear matrix|nuclear speck	damaged DNA binding|endonuclease activity|oxidized purine base lesion DNA N-glycosylase activity|protein binding				0	Medulloblastoma(99;0.227)					CATCCTGGAAGAACAGGGCGG	0.642								BER_DNA_glycosylases					5	16					0	0	0	0
MYRIP	25924	broad.mit.edu	37	3	40231679	40231679	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:40231679C>A	uc003cka.2	+	10	1525	c.1390C>A	c.(1390-1392)CGA>AGA	p.R464R	MYRIP_uc010hhu.2_RNA|MYRIP_uc010hhv.2_Silent_p.R464R|MYRIP_uc010hhw.2_Silent_p.R375R|MYRIP_uc011ayz.1_Silent_p.R277R|uc003ckb.2_Intron	NM_015460	NP_056275	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	464	Myosin-binding.				intracellular protein transport		actin binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		AGGCTCTTCCCGAGAAGTTGG	0.622													15	42					0.000308642	0.000596256	1	0
CCDC13	152206	broad.mit.edu	37	3	42793455	42793455	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:42793455C>T	uc003cly.3	-	5	660	c.576G>A	c.(574-576)CCG>CCA	p.P192P	CCDC13_uc003clz.2_Silent_p.P192P|CCDC13_uc011azq.1_Silent_p.P192P	NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	192	Potential.									ovary(1)	1						TCTGGGCCCTCGGTGGCTTGG	0.597													21	49					0	0	0	0
ZNF445	353274	broad.mit.edu	37	3	44489577	44489577	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:44489577G>A	uc003cnf.2	-	8	1934	c.1586C>T	c.(1585-1587)GCG>GTG	p.A529V	ZNF445_uc011azv.1_Missense_Mutation_p.A517V|ZNF445_uc011azw.1_Missense_Mutation_p.A529V	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	529	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		CTCATGCCGCGCACAGTTGGA	0.483													9	73					0	0	0	0
DNAH1	25981	broad.mit.edu	37	3	52404172	52404172	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:52404172C>T	uc011bef.1	+	39	6446	c.6185C>T	c.(6184-6186)TCA>TTA	p.S2062L		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2062					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GTGATCGCCTCAACCAACTGC	0.577													4	30					0	0	0	0
ITIH4	3700	broad.mit.edu	37	3	52852070	52852070	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:52852070T>C	uc003dfz.2	-	20	2330	c.2294A>G	c.(2293-2295)CAA>CGA	p.Q765R	ITIH4_uc011bel.1_Missense_Mutation_p.Q479R|ITIH4_uc003dfy.2_Intron|ITIH4_uc011bem.1_Missense_Mutation_p.Q770R|ITIH4_uc011ben.1_Missense_Mutation_p.Q735R	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	765					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		TCTCTCACCTTGCTCAGGGTC	0.647													13	27					0	0	0	0
CNTN3	5067	broad.mit.edu	37	3	74350577	74350577	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:74350577G>A	uc003dpm.1	-	15	2147	c.2067C>T	c.(2065-2067)CCC>CCT	p.P689P		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	689	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		CTTTTTCTGAGGGTAAACTTG	0.413													14	61					0	0	0	0
VGLL3	389136	broad.mit.edu	37	3	87018032	87018032	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:87018032C>A	uc003dqn.2	-	3	1009	c.645G>T	c.(643-645)GTG>GTT	p.V215V		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	215					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		AGGATGGGCTCACCTGAGATG	0.483													17	34					7.07596e-05	0.000139301	1	0
OR5H1	26341	broad.mit.edu	37	3	97851900	97851900	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:97851900A>G	uc011bgt.1	+	1	359	c.359A>G	c.(358-360)TAT>TGT	p.Y120C		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						ACGATGGCATATGATCGCTAT	0.393													4	183					0	0	0	0
OR5H1	26341	broad.mit.edu	37	3	97852332	97852332	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:97852332C>G	uc011bgt.1	+	1	791	c.791C>G	c.(790-792)TCT>TGT	p.S264C		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GGCCCTGCATCTCCGCAAGCA	0.433													13	110					0	0	0	0
OR5H1	26341	broad.mit.edu	37	3	97852367	97852367	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:97852367C>G	uc011bgt.1	+	1	826	c.826C>G	c.(826-828)CTA>GTA	p.L276V		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GGTGGAGCCTCTATTCTACAC	0.393													13	101					0	0	0	0
MYH15	22989	broad.mit.edu	37	3	108135752	108135752	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:108135752C>G	uc003dxa.1	-	30	3972	c.3915G>C	c.(3913-3915)GAG>GAC	p.E1305D		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1305	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GAGCCTCCTTCTCTTCAAGCC	0.438													8	61					0	0	0	0
CD200R1	131450	broad.mit.edu	37	3	112648042	112648042	+	Missense_Mutation	SNP	A	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:112648042A>C	uc003dzk.1	-	3	679	c.446T>G	c.(445-447)GTG>GGG	p.V149G	CD200R1_uc003dzj.1_Missense_Mutation_p.V172G|CD200R1_uc011bhx.1_Missense_Mutation_p.V127G|CD200R1_uc003dzl.1_Missense_Mutation_p.V172G|CD200R1_uc003dzm.1_Missense_Mutation_p.V149G	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	149	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						CTTACCTAACACTTGGAGGTG	0.418													8	93					0	0	0	0
WDR52	55779	broad.mit.edu	37	3	113085109	113085109	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:113085109C>A	uc003eae.1	-	19	2538	c.2492G>T	c.(2491-2493)CGA>CTA	p.R831L	WDR52_uc003ead.1_Missense_Mutation_p.R12L	NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	831	WD 8.									central_nervous_system(1)	1						GACATAGACTCGAATTGCTCC	0.308													10	30					0.000442599	0.000850371	1	0
TMEM39A	55254	broad.mit.edu	37	3	119156656	119156656	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:119156656G>A	uc003eck.1	-	6	1233	c.870C>T	c.(868-870)TTC>TTT	p.F290F	TMEM39A_uc003ecl.1_Silent_p.F138F	NM_018266	NP_060736	Q9NV64	TM39A_HUMAN	transmembrane protein 39A	290	Helical; (Potential).					integral to membrane				ovary(1)|breast(1)	2				GBM - Glioblastoma multiforme(114;0.244)		AGAGGGAGTTGAAGAGAACCT	0.448													7	37					0	0	0	0
ADPRH	141	broad.mit.edu	37	3	119306495	119306495	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:119306495G>T	uc003ecs.2	+	5	1142	c.844G>T	c.(844-846)GTT>TTT	p.V282F	ADPRH_uc010hqv.2_Missense_Mutation_p.V282F|ADPRH_uc011bjb.1_Missense_Mutation_p.V175F|ADPRH_uc003ect.2_Missense_Mutation_p.V282F	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	282					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		CTACGATGCTGTTCTTGCTGC	0.577													16	50					4.7546e-09	1.03448e-08	1	0
STXBP5L	9515	broad.mit.edu	37	3	120998664	120998664	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:120998664G>T	uc003eec.3	+	19	2111	c.1971G>T	c.(1969-1971)GGG>GGT	p.G657G	STXBP5L_uc011bji.1_Silent_p.G657G	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	657	WD 10.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TTGCATTTGGGAACTGCAATG	0.353													11	75					2.80697e-09	6.14528e-09	1	0
POLQ	10721	broad.mit.edu	37	3	121217352	121217352	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:121217352G>A	uc003eee.3	-	13	2254	c.2125C>T	c.(2125-2127)CAG>TAG	p.Q709*		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	709					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TGTCGATGCTGTCTCTCAGTT	0.388								DNA_polymerases_(catalytic_subunits)					7	131					0	0	0	0
PARP14	54625	broad.mit.edu	37	3	122437543	122437543	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:122437543C>G	uc003efq.3	+	14	4604	c.4545C>G	c.(4543-4545)ATC>ATG	p.I1515M	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.I1232M|PARP14_uc003efs.1_Missense_Mutation_p.I1232M	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	1515					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		AGGCGATGATCAAGAGAGTTC	0.383													21	229					0	0	0	0
PDIA5	10954	broad.mit.edu	37	3	122811251	122811251	+	Silent	SNP	G	T	T	rs139086659	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:122811251G>T	uc003egc.1	+	3	275	c.219G>T	c.(217-219)GCG>GCT	p.A73A	PDIA5_uc003egd.1_RNA	NM_006810	NP_006801	Q14554	PDIA5_HUMAN	protein disulfide isomerase A5 precursor	73					cell redox homeostasis|glycerol ether metabolic process|protein folding|response to stress	endoplasmic reticulum lumen	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.0427)		TGGCCCAGGCGGTGAAAGGAC	0.527													12	52					0.00010058	0.000196248	1	0
PDIA5	10954	broad.mit.edu	37	3	122842957	122842957	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:122842957C>T	uc003egc.1	+	9	710	c.654C>T	c.(652-654)ATC>ATT	p.I218I	PDIA5_uc003egd.1_RNA	NM_006810	NP_006801	Q14554	PDIA5_HUMAN	protein disulfide isomerase A5 precursor	218	Thioredoxin 1.				cell redox homeostasis|glycerol ether metabolic process|protein folding|response to stress	endoplasmic reticulum lumen	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.0427)		TTGAAAACATCAAGGAGGAGT	0.557													17	62					0	0	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125879705	125879705	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:125879705C>A	uc003eim.1	-	2	308	c.118G>T	c.(118-120)GAC>TAC	p.D40Y	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.D40Y|ALDH1L1_uc010hsf.1_Silent_p.P4P|ALDH1L1_uc003eip.1_5'Flank|ALDH1L1_uc011bkj.1_5'UTR	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	40	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CCCAGGGGGTCGGCCTTTCCA	0.597													18	102					1.01871e-10	2.28722e-10	1	0
ABTB1	80325	broad.mit.edu	37	3	127395201	127395201	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:127395201G>A	uc003ejt.2	+	5	495	c.407G>A	c.(406-408)CGT>CAT	p.R136H	ABTB1_uc003ejr.2_5'UTR|ABTB1_uc003ejs.2_Missense_Mutation_p.R111H|ABTB1_uc003eju.2_5'UTR|ABTB1_uc010hsm.2_5'Flank	NM_172027	NP_742024	Q969K4	ABTB1_HUMAN	ankyrin repeat and BTB (POZ) domain containing 1	136	BTB 1.					cytoplasm|nucleolus|plasma membrane	translation elongation factor activity				0						CTGGGTGCACGTAGTGCCTAC	0.582													7	125					0	0	0	0
ATP2C1	27032	broad.mit.edu	37	3	130649306	130649306	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:130649306T>A	uc003enl.2	+	3	275	c.53T>A	c.(52-54)ATT>AAT	p.I18N	ATP2C1_uc011blg.1_Missense_Mutation_p.I52N|ATP2C1_uc011blh.1_Missense_Mutation_p.I52N|ATP2C1_uc011bli.1_Missense_Mutation_p.I52N|ATP2C1_uc003enk.2_Missense_Mutation_p.I2N|ATP2C1_uc003enm.2_Missense_Mutation_p.I18N|ATP2C1_uc003enn.2_Missense_Mutation_p.I2N|ATP2C1_uc003eno.2_Missense_Mutation_p.I18N|ATP2C1_uc003enp.2_Missense_Mutation_p.I18N|ATP2C1_uc003enq.2_Missense_Mutation_p.I18N|ATP2C1_uc003enr.2_Missense_Mutation_p.I18N|ATP2C1_uc003ens.2_Missense_Mutation_p.I18N|ATP2C1_uc003ent.2_Missense_Mutation_p.I18N	NM_014382	NP_055197	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1a	18	Cytoplasmic (By similarity).				actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	GAGACAATGATTCCTGTATTG	0.363									Hailey-Hailey_disease				7	36					0	0	0	0
CCRL1	51554	broad.mit.edu	37	3	132320167	132320167	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:132320167C>G	uc003eow.2	+	2	1009	c.926C>G	c.(925-927)TCT>TGT	p.S309C	ACAD11_uc003eov.3_Intron|ACAD11_uc011blr.1_Intron|CCRL1_uc003eox.2_Missense_Mutation_p.S309C	NM_016557	NP_057641	Q9NPB9	CCRL1_HUMAN	chemokine (C-C motif) receptor-like 1	309	Helical; Name=7; (Potential).				chemotaxis|immune response	integral to plasma membrane	C-C chemokine receptor activity				0						ATGGGAGCATCTTTCAAAAAC	0.443													7	93					0	0	0	0
DZIP1L	199221	broad.mit.edu	37	3	137803006	137803006	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:137803006G>C	uc003erq.2	-	8	1515	c.1152C>G	c.(1150-1152)CTC>CTG	p.L384L	DZIP1L_uc003err.1_Silent_p.L384L	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	384	Potential.					intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						GCTGGGCACGGAGGGTGCTGA	0.612													5	91					0	0	0	0
COPB2	9276	broad.mit.edu	37	3	139090585	139090585	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:139090585T>C	uc003etf.3	-	10	1315	c.1185A>G	c.(1183-1185)GCA>GCG	p.A395A	COPB2_uc011bmv.1_Silent_p.A366A|COPB2_uc010hui.2_Silent_p.A366A	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	395	WD 8.				COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						CGTGGGCCCATGCAAACTCCT	0.453													7	102					0	0	0	0
TRIM42	287015	broad.mit.edu	37	3	140397246	140397246	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:140397246G>C	uc003eto.1	+	1	366	c.175G>C	c.(175-177)GAG>CAG	p.E59Q		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	59	Cys-rich.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						CACCTGTTCTGAGAGCCCCAA	0.537													7	105					0	0	0	0
ATR	545	broad.mit.edu	37	3	142224127	142224127	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:142224127G>C	uc003eux.3	-	29	5172	c.5050C>G	c.(5050-5052)CAT>GAT	p.H1684D		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1684	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TCAGGTTCATGCATAGCAGCA	0.363								Other_conserved_DNA_damage_response_genes					16	215					0	0	0	0
ZIC4	84107	broad.mit.edu	37	3	147113922	147113922	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:147113922G>C	uc003ewd.1	-	3	678	c.405C>G	c.(403-405)GCC>GCG	p.A135A	ZIC4_uc003ewc.1_Silent_p.A65A|ZIC4_uc011bno.1_Silent_p.A185A	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	135	C2H2-type 1; atypical.					nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						CGGTGCCGTCGGCCGCCAGCC	0.657													12	53					0	0	0	0
FAM194A	131831	broad.mit.edu	37	3	150421607	150421607	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:150421607C>T	uc003eyg.2	-	1	136	c.79G>A	c.(79-81)GAG>AAG	p.E27K	FAM194A_uc003eyh.2_5'UTR	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	27	Glu-rich.									skin(2)|ovary(1)	3						tcctcctcctcctctaactcc	0.279													8	34					0	0	0	0
SIAH2	6478	broad.mit.edu	37	3	150460112	150460112	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:150460112C>G	uc003eyi.2	-	2	1418	c.791G>C	c.(790-792)AGA>ACA	p.R264T		NM_005067	NP_005058	O43255	SIAH2_HUMAN	seven in absentia homolog 2	264	SBD.				apoptosis|axon guidance|cell cycle|negative regulation of canonical Wnt receptor signaling pathway|small GTPase mediated signal transduction|ubiquitin-dependent protein catabolic process	cytosol|nucleus	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			CAACTCCAGTCTGTAGGCAAA	0.567													4	66					0	0	0	0
MED12L	116931	broad.mit.edu	37	3	151073819	151073819	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:151073819G>A	uc003eyp.2	+	17	2586	c.2548G>A	c.(2548-2550)GCA>ACA	p.A850T	MED12L_uc011bnz.1_Missense_Mutation_p.A710T|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.A14T	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	850					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AATTGACTTCGCAATACAGGT	0.403													19	56					0	0	0	0
LEKR1	389170	broad.mit.edu	37	3	156711004	156711004	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:156711004G>T	uc003fba.1	+	10	1470	c.135G>T	c.(133-135)CTG>CTT	p.L45L		NM_001004316	NP_001004316	Q6ZMV7	LEKR1_HUMAN	leucine, glutamate and lysine rich 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			AAAATGAACTGGAGATAACCA	0.328													21	88					4.26978e-12	9.78653e-12	1	0
GFM1	85476	broad.mit.edu	37	3	158399882	158399882	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:158399882T>A	uc003fce.2	+	14	1807	c.1700T>A	c.(1699-1701)TTG>TAG	p.L567*	GFM1_uc003fcd.2_Nonsense_Mutation_p.L567*|GFM1_uc003fcf.2_RNA|GFM1_uc003fcg.2_Nonsense_Mutation_p.L498*	NM_024996	NP_079272	Q96RP9	EFGM_HUMAN	G elongation factor, mitochondrial 1 precursor	567					mitochondrial translational elongation	mitochondrion	GTP binding|GTPase activity|translation elongation factor activity			ovary(3)|central_nervous_system(1)	4			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			TACACTAAATTGGAATTTTCA	0.368													5	25					0	0	0	0
KPNA4	3840	broad.mit.edu	37	3	160243624	160243624	+	Silent	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:160243624T>A	uc003fdn.2	-	10	1041	c.735A>T	c.(733-735)CCA>CCT	p.P245P		NM_002268	NP_002259	O00629	IMA4_HUMAN	karyopherin alpha 4	245	ARM 5.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			CACAAAGGGCTGGAAGAATCT	0.244													4	19					0	0	0	0
GOLIM4	27333	broad.mit.edu	37	3	167750532	167750532	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:167750532G>A	uc003ffe.2	-	9	1296	c.952C>T	c.(952-954)CCA>TCA	p.P318S	GOLIM4_uc011bpe.1_Missense_Mutation_p.P318S|GOLIM4_uc011bpf.1_Missense_Mutation_p.P290S|GOLIM4_uc011bpg.1_Missense_Mutation_p.P290S	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	318	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						ATTGGCTCTGGGGGAGCCTGA	0.507													58	101					0	0	0	0
FNDC3B	64778	broad.mit.edu	37	3	172025215	172025215	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:172025215A>T	uc003fhy.2	+	10	1296	c.1124A>T	c.(1123-1125)CAC>CTC	p.H375L	FNDC3B_uc003fhz.3_Missense_Mutation_p.H375L|FNDC3B_uc003fia.2_Missense_Mutation_p.H306L	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	375						endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		TTCACCACCCACAGCTGTGCA	0.512													23	80					0	0	0	0
NLGN1	22871	broad.mit.edu	37	3	173322659	173322659	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:173322659G>T	uc003fio.1	+	3	694	c.271G>T	c.(271-273)GGG>TGG	p.G91W	NLGN1_uc010hww.1_Missense_Mutation_p.G91W|NLGN1_uc003fip.1_Missense_Mutation_p.G91W	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	91	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			CCCACCAACAGGGGAACGTCG	0.448													62	136					1.07796e-43	2.69183e-43	1	0
NLGN1	22871	broad.mit.edu	37	3	173998723	173998723	+	Missense_Mutation	SNP	A	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:173998723A>C	uc003fio.1	+	7	2525	c.2102A>C	c.(2101-2103)AAG>ACG	p.K701T	NLGN1_uc003fip.1_Missense_Mutation_p.K701T	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	718	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			TACTACAAAAAGGATAAGAGG	0.468													20	78					0	0	0	0
MCF2L2	23101	broad.mit.edu	37	3	182937691	182937691	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:182937691G>C	uc003fli.1	-	21	2413	c.2323C>G	c.(2323-2325)CCT>GCT	p.P775A		NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	775	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			ATATCTTCAGGAGACTCGAAA	0.348													12	188					0	0	0	0
MCF2L2	23101	broad.mit.edu	37	3	183028720	183028720	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:183028720C>G	uc003fli.1	-	9	1066	c.976G>C	c.(976-978)GAG>CAG	p.E326Q	MCF2L2_uc003flj.1_Missense_Mutation_p.E326Q|MCF2L2_uc003flp.1_Missense_Mutation_p.E361Q|MCF2L2_uc011bqs.1_RNA	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	326	Spectrin.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			AAATCGTGCTCAAAATGCTGT	0.403													3	77					0	0	0	0
ABCF3	55324	broad.mit.edu	37	3	183905711	183905711	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:183905711C>T	uc003fmz.2	+	6	642	c.509C>T	c.(508-510)TCT>TTT	p.S170F	ABCF3_uc003fna.2_Missense_Mutation_p.S164F|ABCF3_uc003fnb.2_5'Flank	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	170							ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TTGGAATCATCTGGCAAGAAC	0.478													11	117					0	0	0	0
KNG1	3827	broad.mit.edu	37	3	186450368	186450368	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:186450368G>T	uc011bsa.1	+	7	1047	c.835G>T	c.(835-837)GAG>TAG	p.E279*	KNG1_uc003fqr.2_Nonsense_Mutation_p.E279*	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	279	Cystatin 3.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	CCCAGAGCTGGAGGAGACACT	0.448													6	145					2.0095e-06	4.12217e-06	1	0
PSAPL1	768239	broad.mit.edu	37	4	7435451	7435451	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:7435451C>T	uc011bwj.1	-	1	1250	c.1156G>A	c.(1156-1158)GAG>AAG	p.E386K	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	386					sphingolipid metabolic process	extracellular region|lysosome					0						GCGTCCCACTCTGGGGACGGC	0.602													21	42					0	0	0	0
CLRN2	645104	broad.mit.edu	37	4	17528565	17528565	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:17528565G>A	uc003gpg.1	+	3	661	c.559G>A	c.(559-561)GAG>AAG	p.E187K		NM_001079827	NP_001073296	A0PK11	CLRN2_HUMAN	clarin 2	187						integral to membrane					0						ACAGTATGAAGAGTCGTTTTG	0.517													7	43					0	0	0	0
KCTD8	386617	broad.mit.edu	37	4	44177183	44177183	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:44177183C>A	uc003gwu.2	-	2	1330	c.1046G>T	c.(1045-1047)GGG>GTG	p.G349V		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	349						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						ACAGGAAGTCCCACTTTCACT	0.463										HNSCC(17;0.042)			13	30					4.3838e-07	9.19657e-07	1	0
SPATA18	132671	broad.mit.edu	37	4	52938153	52938153	+	Silent	SNP	C	A	A	rs146272260	by1000genomes	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:52938153C>A	uc003gzl.2	+	6	867	c.589C>A	c.(589-591)CGG>AGG	p.R197R	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Silent_p.R165R|SPATA18_uc003gzk.1_Silent_p.R197R	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	197					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			AGAGAATAGGCGGTCAGAGCC	0.478													7	38					8.12818e-05	0.000159302	1	0
PDGFRA	5156	broad.mit.edu	37	4	55131137	55131137	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:55131137C>A	uc003han.3	+	5	1011	c.680C>A	c.(679-681)TCA>TAA	p.S227*	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_3'UTR|PDGFRA_uc010igq.1_Nonsense_Mutation_p.S121*|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	227	Ig-like C2-type 3.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GTGTATAAGTCAGGGGAAACG	0.433			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			26	100					2.44723e-14	5.79816e-14	1	0
UGT2B10	7365	broad.mit.edu	37	4	69875669	69875669	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:69875669C>A	uc011cao.1	-	7	1077	c.941G>T	c.(940-942)CGA>CTA	p.R314L	UGT2B10_uc011can.1_Missense_Mutation_p.R230L			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	351					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CCTGTACAGCCGAGTATTGAG	0.383													7	75					5.18039e-06	1.05407e-05	1	0
UGT2B11	10720	broad.mit.edu	37	4	70079865	70079865	+	Silent	SNP	G	T	T	rs148942208	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:70079865G>T	uc003heh.2	-	1	585	c.576C>A	c.(574-576)TCC>TCA	p.S192S	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	192					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TAGGTATGTAGGAAGGAGGGA	0.393													15	65					0.00316338	0.00590363	1	0
MUC7	4589	broad.mit.edu	37	4	71347573	71347573	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:71347573T>C	uc011cat.1	+	4	1400	c.1112T>C	c.(1111-1113)ATT>ACT	p.I371T	MUC7_uc011cau.1_Missense_Mutation_p.I371T|MUC7_uc003hfj.2_Missense_Mutation_p.I371T|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	371						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			AACAGAATTATTGACGACATG	0.333													12	46					0	0	0	0
AMTN	401138	broad.mit.edu	37	4	71396868	71396868	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:71396868G>T	uc003hfk.1	+	8	559	c.470G>T	c.(469-471)GGA>GTA	p.G157V	AMTN_uc010ihy.1_Missense_Mutation_p.G156V	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	157					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			CCAGCAGGAGGAGCAGGTGTA	0.607													11	32					4.68919e-08	9.99224e-08	1	0
NPFFR2	10886	broad.mit.edu	37	4	72897759	72897759	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:72897759C>G	uc003hgg.2	+	1	239	c.141C>G	c.(139-141)AGC>AGG	p.S47R	NPFFR2_uc010iig.1_5'UTR	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	47	Extracellular (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			GGAGCGGAAGCCTGGAGTGGA	0.662													7	36					0	0	0	0
ANKRD17	26057	broad.mit.edu	37	4	74043106	74043106	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:74043106C>T	uc003hgp.2	-	2	655	c.538G>A	c.(538-540)GAA>AAA	p.E180K	ANKRD17_uc003hgo.2_Missense_Mutation_p.E67K|ANKRD17_uc003hgq.2_Missense_Mutation_p.E180K|ANKRD17_uc003hgr.2_Missense_Mutation_p.E180K	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	180					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CCTGCAGCTTCTAGTAAAGCT	0.398													7	73					0	0	0	0
CXCL13	10563	broad.mit.edu	37	4	78528901	78528901	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:78528901C>A	uc003hkr.2	+	3	187	c.109C>A	c.(109-111)CAA>AAA	p.Q37K		NM_006419	NP_006410	O43927	CXL13_HUMAN	chemokine (C-X-C motif) ligand 13 (B-cell	37					activation of Rap GTPase activity|B cell chemotaxis|cell-cell signaling|chronic inflammatory response|defense response to bacterium|elevation of cytosolic calcium ion concentration|endothelial cell chemotaxis to fibroblast growth factor|germinal center formation|lymphocyte chemotaxis across high endothelial venule|negative regulation of apoptosis|positive regulation of cell-cell adhesion mediated by integrin|positive regulation of integrin activation|positive regulation of T cell chemotaxis|regulation of angiogenesis|regulation of humoral immune response	extracellular space|soluble fraction	CCR10 chemokine receptor binding|chemokine activity|CXCR3 chemokine receptor binding|CXCR5 chemokine receptor binding|fibroblast growth factor 2 binding|heparin binding|protein heterodimerization activity|receptor agonist activity				0						TAGATGTGTCCAAGAGAGCTC	0.388													17	70					1.01871e-10	2.28722e-10	1	0
FRAS1	80144	broad.mit.edu	37	4	79455626	79455626	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:79455626A>T	uc003hlb.2	+	71	11389	c.10949A>T	c.(10948-10950)CAG>CTG	p.Q3650L		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3645	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ATTGCATTCCAGCAGACCAAC	0.443													32	142					0	0	0	0
WDFY3	23001	broad.mit.edu	37	4	85781681	85781681	+	Missense_Mutation	SNP	C	G	G	rs138518540	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:85781681C>G	uc003hpd.2	-	4	472	c.64G>C	c.(64-66)GCC>CCC	p.A22P	WDFY3_uc003hpf.2_Missense_Mutation_p.A22P	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	22						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AGTCCTAAGGCGTTGTCTTGT	0.542													12	55					0	0	0	0
MMRN1	22915	broad.mit.edu	37	4	90857200	90857200	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:90857200T>G	uc003hst.2	+	6	2440	c.2369T>G	c.(2368-2370)GTC>GGC	p.V790G	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.V532G	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	790					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		CAGACTTTGGTCAATGACAAT	0.378													7	58					0	0	0	0
ATOH1	474	broad.mit.edu	37	4	94750474	94750474	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:94750474G>C	uc003hta.1	+	1	397	c.397G>C	c.(397-399)GGC>CGC	p.G133R		NM_005172	NP_005163	Q92858	ATOH1_HUMAN	atonal homolog 1	133					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.57e-07)		CAAGCTGAAAGGCGGGGTGGT	0.672													3	44					0	0	0	0
HPGDS	27306	broad.mit.edu	37	4	95223375	95223375	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:95223375C>T	uc003hte.1	-	5	448	c.357G>A	c.(355-357)CTG>CTA	p.L119L		NM_014485	NP_055300	O60760	HPGDS_HUMAN	prostaglandin D2 synthase, hematopoietic	119	GST C-terminal.				locomotory behavior|prostaglandin biosynthetic process|signal transduction	cytoplasm|nucleus	calcium ion binding|glutathione transferase activity|magnesium ion binding|prostaglandin-D synthase activity|protein homodimerization activity			ovary(1)	1					Glutathione(DB00143)	TATACGTGAGCAGCTCATTGA	0.378													45	163					0	0	0	0
UNC5C	8633	broad.mit.edu	37	4	96256640	96256640	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:96256640G>T	uc003htp.1	-	2	421	c.267C>A	c.(265-267)ACC>ACA	p.T89T	UNC5C_uc010ilc.1_Silent_p.T89T|UNC5C_uc003htq.2_Silent_p.T89T	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	89	Extracellular (Potential).|Ig-like.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		AATAGATCTGGGTGGCAGGGC	0.428													20	46					1.50039e-11	3.40786e-11	1	0
TET2	54790	broad.mit.edu	37	4	106156786	106156786	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:106156786G>T	uc003hxk.2	+	3	2073	c.1687G>T	c.(1687-1689)GGA>TGA	p.G563*	TET2_uc011cez.1_Nonsense_Mutation_p.G584*|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Nonsense_Mutation_p.G563*|TET2_uc003hxi.1_Nonsense_Mutation_p.G563*	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	563					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TCTGAAACCAGGATGGATTGA	0.463			Mis N|F		MDS								21	73					9.95505e-16	2.39084e-15	1	0
FABP2	2169	broad.mit.edu	37	4	120240198	120240198	+	Nonstop_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:120240198A>T	uc003icw.2	-	4	456	c.397T>A	c.(397-399)TGA>AGA	p.*133R		NM_000134	NP_000125	P12104	FABPI_HUMAN	intestinal fatty acid binding protein 2	133							fatty acid binding			ovary(1)	1						AATAATGCTCAATCCTTTTTA	0.328													14	74					0	0	0	0
EXOSC9	5393	broad.mit.edu	37	4	122734498	122734498	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:122734498G>A	uc003iea.2	+	9	1045	c.937G>A	c.(937-939)GAA>AAA	p.E313K	EXOSC9_uc003idz.2_Missense_Mutation_p.E313K|EXOSC9_uc003ieb.2_Missense_Mutation_p.E297K|EXOSC9_uc010inp.1_Intron	NM_005033	NP_005024	Q06265	EXOS9_HUMAN	exosome component 9 isoform 2	313					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|immune response|nuclear mRNA surveillance|nuclear polyadenylation-dependent rRNA catabolic process|positive regulation of cell growth|rRNA processing	cytosol|nuclear exosome (RNase complex)|nucleolus|nucleolus|nucleus	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0						AGAAAAAGCAGAAGAAATCAT	0.363													10	111					0	0	0	0
ANKRD50	57182	broad.mit.edu	37	4	125593540	125593540	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:125593540T>C	uc003ifg.3	-	3	1158	c.892A>G	c.(892-894)AAA>GAA	p.K298E	ANKRD50_uc011cgo.1_Missense_Mutation_p.K119E|ANKRD50_uc010inw.2_Missense_Mutation_p.K298E	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	298										central_nervous_system(1)	1						CCACTGCTTTTAATGTGCAGT	0.363													8	28					0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126242430	126242430	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:126242430C>G	uc003ifj.3	+	1	4864	c.4864C>G	c.(4864-4866)CAG>GAG	p.Q1622E		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1622	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CATCATTCTTCAGGGCCTTGA	0.428													16	106					0	0	0	0
SLC25A31	83447	broad.mit.edu	37	4	128685492	128685492	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:128685492G>A	uc003ifl.2	+	3	601	c.455G>A	c.(454-456)CGA>CAA	p.R152Q		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	152	Solcar 2.				transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						GCCCGAACCCGATTAGGTGTC	0.398													7	40					0	0	0	0
ZNF827	152485	broad.mit.edu	37	4	146806946	146806946	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:146806946G>A	uc003ikn.2	-	4	1679	c.1631C>T	c.(1630-1632)CCC>CTC	p.P544L	ZNF827_uc003ikm.2_Missense_Mutation_p.P544L|ZNF827_uc010iox.2_Missense_Mutation_p.P194L	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	544					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					GTGGTTGGCGGGCCTGTCGGC	0.557													8	56					0	0	0	0
NR3C2	4306	broad.mit.edu	37	4	149357050	149357050	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:149357050C>A	uc003ilj.3	-	2	1297	c.963G>T	c.(961-963)ACG>ACT	p.T321T	NR3C2_uc003ilk.3_Silent_p.T321T|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	321	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	GACTGGAAAGCGTGGATCTGT	0.483													16	75					0.000422831	0.000815063	1	0
DCLK2	166614	broad.mit.edu	37	4	151000270	151000270	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:151000270T>C	uc003ilm.3	+	1	191	c.91T>C	c.(91-93)TCC>CCC	p.S31P	DCLK2_uc003iln.3_Missense_Mutation_p.S31P|DCLK2_uc003ilo.3_Missense_Mutation_p.S31P|DCLK2_uc003ilp.3_RNA	NM_001040260	NP_001035350	Q8N568	DCLK2_HUMAN	doublecortin-like kinase 2 isoform a	31					intracellular signal transduction	cytoplasm|cytoskeleton	ATP binding|protein serine/threonine kinase activity			ovary(3)	3	all_hematologic(180;0.151)					CCCCAGCTCCTCCGGGGGCAG	0.706													9	13					0	0	0	0
DCHS2	54798	broad.mit.edu	37	4	155236942	155236942	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:155236942C>A	uc003inw.2	-	15	3853	c.3853G>T	c.(3853-3855)GGG>TGG	p.G1285W		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1285	Cadherin 11.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ACAAACTCCCCTGGATTTTGG	0.368													7	75					1.06961e-07	2.26552e-07	1	0
MAP9	79884	broad.mit.edu	37	4	156289867	156289867	+	Silent	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:156289867T>A	uc003ios.2	-	5	843	c.579A>T	c.(577-579)GGA>GGT	p.G193G	MAP9_uc011cin.1_Silent_p.G192G|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Silent_p.G192G|MAP9_uc010iqb.1_Silent_p.G120G	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	193	Potential.				cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		TATCTTCTAGTCCATCCTTCT	0.428													15	78					0	0	0	0
ZFP42	132625	broad.mit.edu	37	4	188924519	188924519	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:188924519C>A	uc003izg.1	+	3	803	c.558C>A	c.(556-558)AGC>AGA	p.S186R	ZFP42_uc003izh.1_Missense_Mutation_p.S186R|ZFP42_uc003izi.1_Missense_Mutation_p.S186R	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	186					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		ACAGTCTGAGCGCAATCGCTT	0.493													31	98					2.09667e-21	5.14796e-21	1	0
TRIML2	205860	broad.mit.edu	37	4	189018247	189018247	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr4:189018247C>G	uc003izl.2	-	6	599	c.563G>C	c.(562-564)AGA>ACA	p.R188T	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Missense_Mutation_p.R263T	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	188	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GCTGAGTCCTCTTATGTGGCA	0.493													12	112					0	0	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5237159	5237159	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:5237159G>T	uc003jdl.2	+	14	2239	c.2101G>T	c.(2101-2103)GGG>TGG	p.G701W	ADAMTS16_uc003jdk.1_Missense_Mutation_p.G701W|ADAMTS16_uc010itk.1_Intron	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	701	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						AGTCAAAGATGGGACTCCATG	0.308													16	55					4.14922e-12	9.54754e-12	1	0
KIAA0947	23379	broad.mit.edu	37	5	5462953	5462953	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:5462953G>A	uc003jdm.3	+	13	3728	c.3506G>A	c.(3505-3507)AGA>AAA	p.R1169K		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1169										ovary(1)|central_nervous_system(1)	2						GAGCTGGATAGACTTTCCACA	0.428													6	14					0	0	0	0
NSUN2	54888	broad.mit.edu	37	5	6611186	6611186	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:6611186C>T	uc003jdu.2	-	11	1173	c.1108G>A	c.(1108-1110)GAT>AAT	p.D370N	NSUN2_uc003jdt.2_Missense_Mutation_p.D134N|NSUN2_uc011cmk.1_Missense_Mutation_p.D335N|NSUN2_uc003jdv.2_Missense_Mutation_p.D134N	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	370						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						CACTGCCCATCTTTCGTCATT	0.502													20	80					0	0	0	0
CTNND2	1501	broad.mit.edu	37	5	11018126	11018126	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:11018126C>T	uc003jfa.1	-	18	3189	c.3044G>A	c.(3043-3045)AGC>AAC	p.S1015N	CTNND2_uc010itt.2_Missense_Mutation_p.S924N|CTNND2_uc011cmy.1_Missense_Mutation_p.S678N|CTNND2_uc011cmz.1_Missense_Mutation_p.S582N|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.S607N	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	1015	ARM 9.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CTGCCACATGCTGTTGAGGAC	0.493													7	82					0	0	0	0
CTNND2	1501	broad.mit.edu	37	5	11364946	11364946	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:11364946C>G	uc003jfa.1	-	8	1379	c.1234G>C	c.(1234-1236)GCC>CCC	p.A412P	CTNND2_uc010itt.2_Missense_Mutation_p.A321P|CTNND2_uc011cmy.1_Missense_Mutation_p.A75P|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	412	ARM 1.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GACTGCAGGGCCCGCAACTCT	0.582													16	86					0	0	0	0
DNAH5	1767	broad.mit.edu	37	5	13870965	13870966	+	Missense_Mutation	DNP	CC	AA	AA	rs140471516		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:13870965_13870966CC>AA	uc003jfd.2	-	24	3786_3787	c.3744_3745GG>TT	c.(3742-3747)AAGGAC>AATTAC	p.1248_1249KD>NY		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1248_1249	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCATCTAGGTCCTTAATTGGAC	0.371									Kartagener_syndrome				10	46					0	0	0	0
NIPBL	25836	broad.mit.edu	37	5	36953855	36953855	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:36953855C>T	uc003jkl.3	+	2	556	c.57C>T	c.(55-57)CTC>CTT	p.L19L	NIPBL_uc003jkk.3_Silent_p.L19L	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	19					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TTGCTAGTCTCACAGACCGTA	0.348													21	61					0	0	0	0
NIPBL	25836	broad.mit.edu	37	5	37003451	37003451	+	Splice_Site	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:37003451T>C	uc003jkl.3	+	16	4354	c.3855_splice	c.e16+2	p.H1285_splice	NIPBL_uc003jkk.3_Splice_Site_p.H1285_splice	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A						brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TTAAATCATGTAAGTTTAAGA	0.224													15	98					0	0	0	0
C9	735	broad.mit.edu	37	5	39341354	39341354	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:39341354C>T	uc003jlv.3	-	4	459	c.370G>A	c.(370-372)GAC>AAC	p.D124N		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	124	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			TCTCCGCAGTCATTGTCACCA	0.463													10	74					0	0	0	0
C5orf51	285636	broad.mit.edu	37	5	41904501	41904501	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:41904501G>A	uc003jmo.2	+	1	32	c.32G>A	c.(31-33)CGA>CAA	p.R11Q		NM_175921	NP_787117	A6NDU8	CE051_HUMAN	hypothetical protein LOC285636	11											0						GTGGTGAGACGAGTGGAAGAG	0.662													6	31					0	0	0	0
HTR1A	3350	broad.mit.edu	37	5	63256751	63256751	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:63256751C>G	uc011cqt.1	-	1	796	c.796G>C	c.(796-798)GGC>CGC	p.G266R		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	266	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CTCTCCACGCCCAGCCTCCAG	0.672													9	94					0	0	0	0
MAP1B	4131	broad.mit.edu	37	5	71482446	71482446	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:71482446C>A	uc003kbw.3	+	4	616	c.375C>A	c.(373-375)CGC>CGA	p.R125R	MAP1B_uc010iyw.1_Silent_p.R125R|MAP1B_uc010iyx.1_5'UTR|MAP1B_uc010iyy.1_5'UTR	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	125						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		TTCAGGTGCGCTTAATGATCA	0.552													15	92					0.000422831	0.000815063	1	0
CMYA5	202333	broad.mit.edu	37	5	79030276	79030276	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:79030276G>T	uc003kgc.2	+	2	5760	c.5688G>T	c.(5686-5688)TTG>TTT	p.L1896F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1896						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ACTGGATGTTGGGAAAGCCAG	0.433													11	52					4.68919e-08	9.99224e-08	1	0
DHFR	1719	broad.mit.edu	37	5	79945217	79945217	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:79945217C>T	uc003kgy.1	-	3	725	c.233G>A	c.(232-234)AGA>AAA	p.R78K	DHFR_uc011ctl.1_Missense_Mutation_p.R158K|DHFR_uc011ctm.1_Missense_Mutation_p.R26K|DHFR_uc010jap.1_RNA|DHFR_uc003kgx.1_Missense_Mutation_p.R227K	NM_000791	NP_000782	P00374	DYR_HUMAN	dihydrofolate reductase	78	NADP.|DHFR.				folic acid metabolic process|glycine biosynthetic process|nucleotide biosynthetic process|one-carbon metabolic process|regulation of transcription involved in G1/S phase of mitotic cell cycle|response to methotrexate|tetrahydrofolate metabolic process	cytosol	dihydrofolate reductase activity|drug binding|folate reductase activity|NADP binding				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.69e-46)|Epithelial(54;7.49e-41)|all cancers(79;1.54e-35)	Dapsone(DB00250)|Dimethyl sulfoxide(DB01093)|Lamotrigine(DB00555)|Methotrexate(DB00563)|NADH(DB00157)|Pemetrexed(DB00642)|Proguanil(DB01131)|Pyrimethamine(DB00205)|Trimethoprim(DB00440)|Trimetrexate(DB01157)	CTTGAGTTCTCTGCTGAGAAC	0.343													9	34					0	0	0	0
RASGRF2	5924	broad.mit.edu	37	5	80376426	80376426	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:80376426G>C	uc003kha.1	+	7	979	c.979G>C	c.(979-981)GAT>CAT	p.D327H	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_Missense_Mutation_p.D155H	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	327	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		TGATCTGTTTGATATTTTGCT	0.433													11	64					0	0	0	0
NBPF22P	285622	broad.mit.edu	37	5	85578561	85578561	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:85578561C>T	uc003kiq.2	+	1	300	c.38C>T	c.(37-39)ACC>ATC	p.T13I		NR_003719				SubName: Full=Putative uncharacterized protein NBPF22P;												0						CCTGGCTCTACCTCTTCTGCC	0.478													21	96					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90073767	90073767	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:90073767G>C	uc003kju.2	+	62	12669	c.12573G>C	c.(12571-12573)TGG>TGC	p.W4191C	GPR98_uc003kjt.2_Missense_Mutation_p.W1897C	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4191	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CAGTGTTCTGGAGGATATTCC	0.428													6	17					0	0	0	0
TTC37	9652	broad.mit.edu	37	5	94842665	94842665	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:94842665G>A	uc003klb.2	-	30	3335	c.3065C>T	c.(3064-3066)GCA>GTA	p.A1022V		NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	1022	TPR 17.						binding			ovary(3)|pancreas(1)	4						ATTTCTTATTGCAACATTGTA	0.323													10	56					0	0	0	0
DMXL1	1657	broad.mit.edu	37	5	118469789	118469789	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:118469789G>C	uc003ksd.2	+	12	2351	c.2170G>C	c.(2170-2172)GAG>CAG	p.E724Q	DMXL1_uc010jcl.1_Missense_Mutation_p.E724Q|DMXL1_uc003ksc.1_Missense_Mutation_p.E724Q	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	724										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		AGGAGTTTCTGAGCTTGCCCG	0.463													15	105					0	0	0	0
FBN2	2201	broad.mit.edu	37	5	127647623	127647623	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:127647623G>C	uc003kuu.2	-	38	5341	c.4902C>G	c.(4900-4902)CCC>CCG	p.P1634P		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1634					bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CTTCACCTCCGGGACACAGGG	0.408													7	30					0	0	0	0
FBN2	2201	broad.mit.edu	37	5	127648347	127648347	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:127648347T>A	uc003kuu.2	-	37	5297	c.4858A>T	c.(4858-4860)ACA>TCA	p.T1620S		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1620	TB 6.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GGGGGGCATGTCTCACAGGGG	0.512													51	211					0	0	0	0
FBN2	2201	broad.mit.edu	37	5	127686626	127686626	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:127686626G>A	uc003kuu.2	-	21	3185	c.2746C>T	c.(2746-2748)CTG>TTG	p.L916L	FBN2_uc003kuv.2_Silent_p.L883L	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	916	TB 4.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TCAGATTTCAGAGTGGCTCCA	0.567													6	68					0	0	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129039981	129039981	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:129039981C>T	uc003kvb.1	+	21	3191	c.3191C>T	c.(3190-3192)ACC>ATC	p.T1064I	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1064	TSP type-1 4.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GTTAGATGTACCAACCCAAGA	0.448													9	102					0	0	0	0
CHSY3	337876	broad.mit.edu	37	5	129520705	129520705	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:129520705C>G	uc003kvd.2	+	3	1870	c.1870C>G	c.(1870-1872)CTC>GTC	p.L624V		NM_175856	NP_787052	Q70JA7	CHSS3_HUMAN	chondroitin sulfate synthase 3	624	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(2)|pancreas(1)	3		all_cancers(142;0.0227)|Breast(839;0.198)|Prostate(80;0.215)|Lung NSC(810;0.239)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.136)		AGTACACATTCTCGTTCCTCT	0.348													13	46					0	0	0	0
IL5	3567	broad.mit.edu	37	5	131879137	131879137	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:131879137G>C	uc003kxe.1	-	1	78	c.34C>G	c.(34-36)CTT>GTT	p.L12V		NM_000879	NP_000870	P05113	IL5_HUMAN	interleukin 5 precursor	12					immune response|inflammatory response|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of podosome assembly	extracellular space	cytokine activity|growth factor activity|interleukin-5 receptor binding				0		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Pranlukast(DB01411)	GCAGCTCCAAGAGCTAGCAAA	0.488													6	94					0	0	0	0
RAD50	10111	broad.mit.edu	37	5	131973799	131973799	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:131973799G>A	uc003kxi.2	+	23	3889	c.3502G>A	c.(3502-3504)GAT>AAT	p.D1168N	RAD50_uc003kxh.2_Missense_Mutation_p.D1029N	NM_005732	NP_005723	Q92878	RAD50_HUMAN	RAD50 homolog isoform 1	1168					DNA duplex unwinding|double-strand break repair via homologous recombination|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|telomere maintenance via telomerase	Mre11 complex|nuclear chromosome, telomeric region|nucleoplasm	ATP binding|DNA binding|nuclease activity|protein binding, bridging|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		all_cancers(142;0.0368)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AATACGGTCTGATGCCGATGA	0.398								Homologous_recombination					9	46					0	0	0	0
DDX46	9879	broad.mit.edu	37	5	134143458	134143458	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:134143458G>A	uc003kzw.2	+	16	2143	c.1975G>A	c.(1975-1977)GAT>AAT	p.D659N	DDX46_uc003kzv.1_RNA	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	659	Helicase C-terminal.				mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ATATGACAGAGATAGCATCAT	0.373													11	46					0	0	0	0
PSD2	84249	broad.mit.edu	37	5	139189229	139189229	+	Missense_Mutation	SNP	C	G	G	rs34206173	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:139189229C>G	uc003leu.1	+	2	409	c.204C>G	c.(202-204)TTC>TTG	p.F68L		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	68					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGTGGCCTTCCATGGCCTCA	0.637													12	67					0	0	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215588	140215588	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140215588G>C	uc003lhq.2	+	1	1620	c.1620G>C	c.(1618-1620)GCG>GCC	p.A540A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.A540A	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	540	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCGCGATGCGGGCGTGCCGC	0.682													36	155					0	0	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516518	140516518	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140516518C>G	uc003liq.2	+	1	1719	c.1502C>G	c.(1501-1503)TCC>TGC	p.S501C		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	501	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCCTCGCCTCCCTGGTCTCC	0.657													34	131					0	0	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531479	140531479	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140531479G>C	uc003lir.2	+	1	1641	c.1641G>C	c.(1639-1641)TTG>TTC	p.L547F	PCDHB6_uc011dah.1_Missense_Mutation_p.L411F	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	547	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGTGCGCTTGCTGGTGCTGG	0.706													27	93					0	0	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554222	140554222	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140554222G>T	uc003lit.2	+	1	1980	c.1806G>T	c.(1804-1806)CTG>CTT	p.L602L		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	602	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACGCCTGGCTGTCGTACCAGC	0.726													17	87					0.00121646	0.00230944	1	0
PCDHB12	56124	broad.mit.edu	37	5	140590115	140590115	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140590115C>A	uc003liz.2	+	1	1825	c.1636C>A	c.(1636-1638)CTG>ATG	p.L546M	PCDHB12_uc011dak.1_Missense_Mutation_p.L209M	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	546	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGCGAGGCGCTGGTGCGCGT	0.697													19	76					0.00121646	0.00230944	1	0
PCDHGB3	56102	broad.mit.edu	37	5	140752193	140752193	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140752193C>A	uc003ljw.1	+	1	2232	c.2232C>A	c.(2230-2232)AGC>AGA	p.S744R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.S744R|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	744	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCACCTACAGCGAAAGGACTT	0.512													7	59					0.00307968	0.00575353	1	0
PCDHGA6	56109	broad.mit.edu	37	5	140755150	140755150	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140755150C>A	uc003ljy.1	+	1	1500	c.1500C>A	c.(1498-1500)CCC>CCA	p.P500P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.P500P	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	500	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGGGGCGCCCCTGTCCTCCT	0.592													26	141					3.73148e-12	8.59756e-12	1	0
PCDHGA7	56108	broad.mit.edu	37	5	140764245	140764245	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140764245G>C	uc003lka.1	+	1	1779	c.1779G>C	c.(1777-1779)GCG>GCC	p.A593A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Silent_p.A593A	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	593	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGGTGGCGGTGGACAAAG	0.637													23	104					0	0	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764339	140764339	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140764339G>A	uc003lka.1	+	1	1873	c.1873G>A	c.(1873-1875)GAG>AAG	p.E625K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.E625K	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	625	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTACACGGGCGAGGTGCGCAC	0.647													8	63					0	0	0	0
PCDHGB7	56099	broad.mit.edu	37	5	140798050	140798050	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:140798050C>G	uc003lkn.1	+	1	769	c.624C>G	c.(622-624)CAC>CAG	p.H208Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.H208Q|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	208	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAGCGCTCACCACTTGGTAC	0.498													20	41					0	0	0	0
ARHGEF37	389337	broad.mit.edu	37	5	149006649	149006649	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:149006649C>T	uc003lra.1	+	11	1539	c.1475C>T	c.(1474-1476)CCA>CTA	p.P492L		NM_001001669	NP_001001669	A1IGU5	ARH37_HUMAN	hypothetical protein LOC389337	492					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0						CCGCTCCTTCCAGGGTCTGAA	0.522													23	78					0	0	0	0
MED7	9443	broad.mit.edu	37	5	156566373	156566373	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:156566373C>T	uc010jik.2	-	2	462	c.70G>A	c.(70-72)GAA>AAA	p.E24K	MED7_uc003lwm.3_Missense_Mutation_p.E24K	NM_001100816	NP_001094286	O43513	MED7_HUMAN	mediator complex subunit 7	24					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex|transcription factor complex	protein binding|transcription coactivator activity				0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGAATATTTTCATCCGTATAT	0.433													14	56					0	0	0	0
C5orf40	408263	broad.mit.edu	37	5	156770191	156770191	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:156770191G>A	uc003lwu.2	-	2	542	c.354C>T	c.(352-354)GCC>GCT	p.A118A	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	118	Helical; (Potential).					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CCAGCAGAATGGCCATCAGCA	0.592											OREG0016977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	51					0	0	0	0
GABRA6	2559	broad.mit.edu	37	5	161119065	161119065	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:161119065C>T	uc003lyu.2	+	8	1283	c.945C>T	c.(943-945)TTC>TTT	p.F315F	GABRA6_uc003lyv.2_Silent_p.F86F	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	315	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CATTCGTCTTCTCTGCGCTTA	0.488										TCGA Ovarian(5;0.080)			10	92					0	0	0	0
LCP2	3937	broad.mit.edu	37	5	169714999	169714999	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:169714999G>C	uc003man.1	-	3	370	c.163C>G	c.(163-165)CAG>GAG	p.Q55E	LCP2_uc011det.1_5'UTR	NM_005565	NP_005556	Q13094	LCP2_HUMAN	lymphocyte cytosolic protein 2	55	SAM.				immune response|platelet activation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	cytosol	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.247)		GGGAACTTCTGGATGTCATTT	0.527													11	31					0	0	0	0
STK10	6793	broad.mit.edu	37	5	171471924	171471924	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:171471924C>T	uc003mbo.1	-	19	3169	c.2869G>A	c.(2869-2871)GCC>ACC	p.A957T		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	957							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AAGAACTTGGCGGCCTTGCTT	0.597													11	52					0	0	0	0
CPEB4	80315	broad.mit.edu	37	5	173376544	173376544	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:173376544C>G	uc003mcs.3	+	6	2896	c.1490C>G	c.(1489-1491)CCT>CGT	p.P497R	CPEB4_uc010jju.1_Missense_Mutation_p.P472R|CPEB4_uc010jjv.2_Missense_Mutation_p.P480R|CPEB4_uc011dfg.1_Missense_Mutation_p.P472R|CPEB4_uc003mct.3_Missense_Mutation_p.P107R|CPEB4_uc003mcu.3_Missense_Mutation_p.P90R	NM_030627	NP_085130	Q17RY0	CPEB4_HUMAN	cytoplasmic polyadenylation element binding	497	RRM 1.						nucleotide binding|RNA binding				0	Renal(175;0.000159)|Lung NSC(126;0.0128)|all_lung(126;0.0202)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CGCTTTGGCCCTCTGATTGTG	0.303													7	31					0	0	0	0
GPRIN1	114787	broad.mit.edu	37	5	176026208	176026208	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:176026208C>T	uc003meo.1	-	2	803	c.628G>A	c.(628-630)GAT>AAT	p.D210N		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	210						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GATCCAAGATCTTCCTTTCTT	0.507													7	82					0	0	0	0
GRM6	2916	broad.mit.edu	37	5	178416278	178416278	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:178416278G>A	uc003mjr.2	-	5	1320	c.1141C>T	c.(1141-1143)CGC>TGC	p.R381C	GRM6_uc010jla.1_5'UTR|GRM6_uc003mjs.1_5'UTR	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	381	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GTGCATTTGCGGGTGGAATCG	0.428													14	30					0	0	0	0
FLT4	2324	broad.mit.edu	37	5	180046692	180046692	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:180046692C>G	uc003mma.3	-	18	2699	c.2620G>C	c.(2620-2622)GAC>CAC	p.D874H	FLT4_uc003mlz.3_Missense_Mutation_p.D874H|FLT4_uc003mmb.1_Missense_Mutation_p.D407H	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	874	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GCCACGGTGTCACAGCTGCTG	0.677									Congenital_Hereditary_Lymphedema				5	125					0	0	0	0
BTNL9	153579	broad.mit.edu	37	5	180477289	180477289	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr5:180477289C>G	uc003mmt.2	+	4	887	c.656C>G	c.(655-657)GCG>GGG	p.A219G	BTNL9_uc011dhi.1_Missense_Mutation_p.A150G	NM_152547	NP_689760	Q6UXG8	BTNL9_HUMAN	butyrophilin-like 9 precursor	219	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(89;2.45e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTTGTCCGAGCGGGAGCCCTC	0.557													24	91					0	0	0	0
KIF13A	63971	broad.mit.edu	37	6	17764532	17764532	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:17764532C>T	uc003ncg.3	-	39	5332	c.5227G>A	c.(5227-5229)GAG>AAG	p.E1743K	KIF13A_uc003ncf.2_Missense_Mutation_p.E1695K|KIF13A_uc003nch.3_Missense_Mutation_p.E1708K|KIF13A_uc003nci.3_Missense_Mutation_p.E1695K|KIF13A_uc003nce.1_Missense_Mutation_p.E294K	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1743					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TCTTTTCCCTCTGACACTCCC	0.493													19	40					0	0	0	0
KIF13A	63971	broad.mit.edu	37	6	17817357	17817357	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:17817357G>A	uc003ncg.3	-	17	1999	c.1894C>T	c.(1894-1896)CGC>TGC	p.R632C	KIF13A_uc003ncf.2_Missense_Mutation_p.R632C|KIF13A_uc003nch.3_Missense_Mutation_p.R632C|KIF13A_uc003nci.3_Missense_Mutation_p.R632C|KIF13A_uc003ncj.2_Missense_Mutation_p.R308C	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	632	Potential.				cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			AGCTGCTGGCGGAGTTGCTCC	0.587													18	55					0	0	0	0
RNF144B	255488	broad.mit.edu	37	6	18459890	18459890	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:18459890C>T	uc003ncs.2	+	6	893	c.589C>T	c.(589-591)CGG>TGG	p.R197W		NM_182757	NP_877434	Q7Z419	R144B_HUMAN	IBR domain containing 2	197	RING-type 2; degenerate.				apoptosis|positive regulation of anti-apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|mitochondrial membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0	Ovarian(93;0.00365)|Breast(50;0.0145)	all_hematologic(90;0.0536)	OV - Ovarian serous cystadenocarcinoma(7;0.00165)|all cancers(50;0.0102)|Epithelial(50;0.0105)			CCCAGTTTGCCGGGTTTATAT	0.468													5	74					0	0	0	0
FAM65B	9750	broad.mit.edu	37	6	24843287	24843287	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:24843287C>G	uc003neo.1	-	14	1899	c.1723G>C	c.(1723-1725)GAG>CAG	p.E575Q	FAM65B_uc011djs.1_Missense_Mutation_p.E554Q|FAM65B_uc011dju.1_Missense_Mutation_p.E559Q|FAM65B_uc003nep.2_Missense_Mutation_p.E525Q|FAM65B_uc011djt.1_Missense_Mutation_p.E525Q	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	575					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						ATTGGCACCTCTGCAGATGTG	0.522													21	216					0	0	0	0
FAM65B	9750	broad.mit.edu	37	6	24873906	24873906	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:24873906C>G	uc003neo.1	-	3	399	c.223G>C	c.(223-225)GAA>CAA	p.E75Q	FAM65B_uc011djs.1_Missense_Mutation_p.E104Q|FAM65B_uc011dju.1_Missense_Mutation_p.E109Q|FAM65B_uc003nep.2_Missense_Mutation_p.E75Q|FAM65B_uc011djt.1_Missense_Mutation_p.E75Q	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	75	Involved in cell filopodia formation.				cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						TAGACTTCTTCCACCCTTTTA	0.448													15	72					0	0	0	0
HIST1H3G	8355	broad.mit.edu	37	6	26271337	26271337	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:26271337G>T	uc003nhi.2	-	1	276	c.276C>A	c.(274-276)GCC>GCA	p.A92A	uc003nhj.2_5'Flank|HIST1H2BI_uc003nhk.2_5'Flank	NM_003534	NP_003525	P68431	H31_HUMAN	H3 histone family, member H	92					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0						CCTCCTGCAGGGCCATCACCG	0.562													29	122					1.1423e-28	2.84041e-28	1	0
OR2B6	26212	broad.mit.edu	37	6	27925414	27925414	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:27925414C>A	uc011dkx.1	+	1	396	c.396C>A	c.(394-396)TAC>TAA	p.Y132*		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	132	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTCTCCATTACTCAGTTATCA	0.493													14	156					1.5842e-08	3.40884e-08	1	0
ZSCAN16	80345	broad.mit.edu	37	6	28093331	28093331	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:28093331G>T	uc003nkm.2	+	2	210	c.110G>T	c.(109-111)AGG>ATG	p.R37M	uc010jqw.1_Intron|uc003nkk.1_Intron|uc003nkl.1_Intron|ZSCAN16_uc011dky.1_Missense_Mutation_p.R37M	NM_025231	NP_079507	Q9H4T2	ZSC16_HUMAN	zinc finger and SCAN domain containing 16	37					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)	1						CCTCACAGGAGGGAACTCTAT	0.532													8	251					0.00448238	0.00834748	1	0
ZNF311	282890	broad.mit.edu	37	6	28971724	28971724	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:28971724T>G	uc003nlu.2	-	2	521	c.8A>C	c.(7-9)GAG>GCG	p.E3A	ZNF311_uc011dlk.1_5'UTR|ZNF311_uc003nlv.2_5'UTR	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	3					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						TCTTCTTACCTCCTGCATCTT	0.463													18	110					0	0	0	0
OR2H1	26716	broad.mit.edu	37	6	29430223	29430223	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:29430223T>A	uc003nmi.2	+	3	1120	c.677T>A	c.(676-678)ATT>AAT	p.I226N	OR2H1_uc003nmj.1_Missense_Mutation_p.I226N|OR2H1_uc010jri.1_Missense_Mutation_p.I148N	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGCTGAGGATTAACTCTGCC	0.537													22	133					0	0	0	0
MDC1	9656	broad.mit.edu	37	6	30673437	30673437	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:30673437C>A	uc003nrg.3	-	10	3963	c.3523G>T	c.(3523-3525)GAC>TAC	p.D1175Y	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Missense_Mutation_p.D782Y	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1175	Pro-rich.|Interaction with the PRKDC complex.			Missing (in Ref. 2; CAH18685).	cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						ACAGGCTGGTCTGTGGAGGTG	0.552								Other_conserved_DNA_damage_response_genes					89	219					5.48297e-45	1.37113e-44	1	0
DDR1	780	broad.mit.edu	37	6	30863278	30863278	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:30863278C>T	uc003nrr.2	+	13	1870	c.1611C>T	c.(1609-1611)CCC>CCT	p.P537P	DDR1_uc010jse.2_Intron|DDR1_uc003nrq.2_Intron|DDR1_uc003nrs.2_Silent_p.P537P|DDR1_uc003nrt.2_Intron|DDR1_uc011dms.1_Intron|DDR1_uc003nru.2_Intron|DDR1_uc003nrv.2_Silent_p.P537P|DDR1_uc003nrw.1_Missense_Mutation_p.P309L|DDR1_uc003nry.1_Intron|DDR1_uc003nrx.1_Intron|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	537	Gly/Pro-rich.|Cytoplasmic (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	GGGCCAAACCCACCAACACCC	0.677													29	107					0	0	0	0
GTF2H4	2968	broad.mit.edu	37	6	30878470	30878470	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:30878470C>T	uc003nsa.1	+	5	610	c.403C>T	c.(403-405)CAG>TAG	p.Q135*	GTF2H4_uc010jsf.2_Nonsense_Mutation_p.Q135*|GTF2H4_uc011dmv.1_Nonsense_Mutation_p.Q79*|GTF2H4_uc003nsb.1_5'UTR|GTF2H4_uc011dmw.1_Nonsense_Mutation_p.Q141*	NM_001517	NP_001508	Q92759	TF2H4_HUMAN	general transcription factor IIH, polypeptide 4,	135					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3						TGACACAAGTCAGCTGGGACC	0.478								NER					4	21					0	0	0	0
CCHCR1	54535	broad.mit.edu	37	6	31112662	31112662	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:31112662C>G	uc003nsr.3	-	14	1921	c.1798G>C	c.(1798-1800)GCC>CCC	p.A600P	CCHCR1_uc011dne.1_Missense_Mutation_p.A600P|CCHCR1_uc003nsq.3_Missense_Mutation_p.A653P|CCHCR1_uc003nsp.3_Missense_Mutation_p.A689P|CCHCR1_uc010jsk.1_Missense_Mutation_p.G600R	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	600	Potential.				cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						CTCTCGACACCTTGCCCGTAG	0.627													26	121					0	0	0	0
TNXB	7148	broad.mit.edu	37	6	32035750	32035750	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:32035750C>G	uc003nzl.2	-	18	6434	c.6232G>C	c.(6232-6234)GAG>CAG	p.E2078Q		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CTGGGGGTCTCTTCCTCTGCA	0.632													12	39					0	0	0	0
TNXB	7148	broad.mit.edu	37	6	32037926	32037926	+	Silent	SNP	A	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:32037926A>C	uc003nzl.2	-	14	5458	c.5256T>G	c.(5254-5256)CCT>CCG	p.P1752P		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1834	Fibronectin type-III 10.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CGGCAGTGAGAGGGCCATGGC	0.642													9	19					0	0	0	0
TCP11	6954	broad.mit.edu	37	6	35087972	35087972	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:35087972C>T	uc003okd.2	-	8	1299	c.1118G>A	c.(1117-1119)CGC>CAC	p.R373H	TCP11_uc003ojz.1_Missense_Mutation_p.R298H|TCP11_uc003oka.2_Missense_Mutation_p.R298H|TCP11_uc003okb.2_Missense_Mutation_p.R297H|TCP11_uc003okc.2_Missense_Mutation_p.R297H|TCP11_uc011dsu.1_Missense_Mutation_p.R355H|TCP11_uc011dsv.1_Missense_Mutation_p.R322H|TCP11_uc011dsw.1_Missense_Mutation_p.R327H	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	360					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						TTTGGTTATGCGTTTCAGTTT	0.438													4	24					0	0	0	0
CPNE5	57699	broad.mit.edu	37	6	36767803	36767803	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:36767803G>A	uc003omr.1	-	4	295	c.228C>T	c.(226-228)TTC>TTT	p.F76F	CPNE5_uc003oms.1_Silent_p.F38F	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	76	C2 1.									skin(1)	1						ACTTGCGCACGAAGTCAGGAT	0.552													9	34					0	0	0	0
GCM1	8521	broad.mit.edu	37	6	52993189	52993189	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:52993189C>T	uc003pbp.2	-	6	1335	c.1126G>A	c.(1126-1128)GTC>ATC	p.V376I		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	376						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					GGAGACTGGACGTAGCTGTTA	0.478													14	165					0	0	0	0
COL21A1	81578	broad.mit.edu	37	6	56044743	56044743	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:56044743G>A	uc003pcs.2	-	3	505	c.273C>T	c.(271-273)CTC>CTT	p.L91L	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Silent_p.L91L|COL21A1_uc003pcu.1_Silent_p.L91L	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	91	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CATAGCTTCCGAGAGGAATCT	0.453													4	14					0	0	0	0
ZNF451	26036	broad.mit.edu	37	6	57013446	57013446	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:57013446G>C	uc003pdm.1	+	10	2787	c.2563G>C	c.(2563-2565)GAC>CAC	p.D855H	ZNF451_uc003pdl.2_Missense_Mutation_p.D855H|ZNF451_uc003pdn.1_Missense_Mutation_p.D855H|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.D855H	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	855					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			AAAAAGTTTAGACATGGAGAA	0.333													4	33					0	0	0	0
PRIM2	5558	broad.mit.edu	37	6	57512590	57512590	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:57512590C>G	uc003pdx.2	+	15	1505	c.1418C>G	c.(1417-1419)CCC>CGC	p.P473R		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	473					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		ACTCCTCAACCCAAACCAAGT	0.393													16	364					0	0	0	0
PHF3	23469	broad.mit.edu	37	6	64394442	64394442	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:64394442G>C	uc003pep.1	+	3	845	c.819G>C	c.(817-819)TTG>TTC	p.L273F	PHF3_uc010kaf.1_Missense_Mutation_p.L273F|PHF3_uc003pem.2_Missense_Mutation_p.L226F|PHF3_uc010kag.1_Missense_Mutation_p.L185F|PHF3_uc010kah.1_Missense_Mutation_p.L87F|PHF3_uc003pen.2_Missense_Mutation_p.L185F|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Missense_Mutation_p.L273F	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	273					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			ATGAAGCTTTGATGGAATGTA	0.348													5	63					0	0	0	0
BAI3	577	broad.mit.edu	37	6	69949029	69949029	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:69949029G>C	uc003pev.3	+	20	3173	c.2725G>C	c.(2725-2727)GAG>CAG	p.E909Q	BAI3_uc010kak.2_Missense_Mutation_p.E909Q|BAI3_uc011dxx.1_Missense_Mutation_p.E115Q|BAI3_uc003pex.1_Missense_Mutation_p.E39Q	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	909	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CATACGCTCTGAGAGATCCAT	0.373													12	142					0	0	0	0
KHDC1	80759	broad.mit.edu	37	6	73919739	73919739	+	RNA	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:73919739C>G	uc011dyl.1	-	8		c.1354G>C						Q4VXA5	KHDC1_HUMAN	Homo sapiens cDNA FLJ30329 fis, clone BRACE2007201.							integral to membrane	RNA binding			skin(1)	1						TGAAAGTTTTCAGGCAGGGTC	0.527													4	29					0	0	0	0
SIM1	6492	broad.mit.edu	37	6	100868714	100868714	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:100868714G>A	uc003pqj.3	-	9	1326	c.1119C>T	c.(1117-1119)TCC>TCT	p.S373S	SIM1_uc010kcu.2_Silent_p.S373S	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	373	Single-minded C-terminal.|Nuclear localization signal (By similarity).				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		TGGAGAGCCGGGATTTGGCCC	0.507													11	37					0	0	0	0
LAMA2	3908	broad.mit.edu	37	6	129513899	129513899	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:129513899G>T	uc003qbn.2	+	12	1788	c.1683G>T	c.(1681-1683)TTG>TTT	p.L561F	LAMA2_uc003qbo.2_Missense_Mutation_p.L561F	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	561	Laminin IV type A 1.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		AGGACGACTTGGACTCACCTC	0.557													7	42					0.00198382	0.003734	1	0
EPB41L2	2037	broad.mit.edu	37	6	131222264	131222264	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:131222264G>C	uc003qch.2	-	7	1168	c.986C>G	c.(985-987)TCT>TGT	p.S329C	EPB41L2_uc003qcg.1_Missense_Mutation_p.S329C|EPB41L2_uc011eby.1_Missense_Mutation_p.S329C|EPB41L2_uc003qci.2_Missense_Mutation_p.S329C|EPB41L2_uc010kfk.2_Missense_Mutation_p.S329C|EPB41L2_uc010kfl.1_Missense_Mutation_p.S329C	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	329	FERM.				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		AGTCACAAAAGAGCAGGGCAG	0.547													13	78					0	0	0	0
C6orf97	80129	broad.mit.edu	37	6	151939225	151939225	+	Silent	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:151939225A>G	uc003qol.2	+	11	2180	c.2091A>G	c.(2089-2091)AAA>AAG	p.K697K		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	697											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		CCTGCCTCAAAGATGTGACTA	0.463													11	58					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152786534	152786534	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:152786534G>C	uc010kiw.2	-	18	2393	c.1791C>G	c.(1789-1791)CTC>CTG	p.L597L	SYNE1_uc003qot.3_Silent_p.L604L|SYNE1_uc003qou.3_Silent_p.L597L|SYNE1_uc010kjb.1_Silent_p.L580L|SYNE1_uc003qpa.1_Silent_p.L597L|SYNE1_uc003qow.2_5'Flank|SYNE1_uc003qox.1_Silent_p.L113L|SYNE1_uc003qoz.2_Silent_p.L29L|SYNE1_uc003qoy.2_Silent_p.L164L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	597	Cytoplasmic (Potential).|HAT 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTTCTACTGAGAGATTCCTCC	0.443										HNSCC(10;0.0054)			8	41					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152826448	152826448	+	Silent	SNP	C	A	A	rs141368652		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:152826448C>A	uc010kiw.2	-	9	1268	c.666G>T	c.(664-666)CCG>CCT	p.P222P	SYNE1_uc003qot.3_Silent_p.P229P|SYNE1_uc003qou.3_Silent_p.P222P|SYNE1_uc010kjb.1_Silent_p.P222P|SYNE1_uc003qpa.1_Silent_p.P222P	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	222	Actin-binding.|CH 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCACCAATTCCGGTCGAATGG	0.448										HNSCC(10;0.0054)			12	42					1.08611e-07	2.29492e-07	1	0
CNKSR3	154043	broad.mit.edu	37	6	154763316	154763316	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:154763316C>T	uc003qpy.2	-	3	830	c.325G>A	c.(325-327)GAT>AAT	p.D109N		NM_173515	NP_775786	Q6P9H4	CNKR3_HUMAN	CNKSR family member 3	109	CRIC.				negative regulation of ERK1 and ERK2 cascade|negative regulation of peptidyl-serine phosphorylation|positive regulation of sodium ion transport	cytoplasm|membrane				ovary(2)|breast(1)|skin(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;5.03e-11)|BRCA - Breast invasive adenocarcinoma(81;0.00627)		GTGTTGCCATCGTAAGCGGGA	0.542													6	45					0	0	0	0
SYNJ2	8871	broad.mit.edu	37	6	158516991	158516991	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:158516991T>C	uc003qqx.1	+	27	4161	c.4086T>C	c.(4084-4086)AAT>AAC	p.N1362N	SYNJ2_uc003qqy.1_Silent_p.N1075N|SYNJ2_uc003qqz.1_Silent_p.N979N|SYNJ2_uc003qra.1_Silent_p.N705N|SYNJ2_uc010kjp.1_Silent_p.N245N	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	1362	Catalytic (By similarity).						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		TCACTTACAATAGCAGTGACA	0.622													8	31					0	0	0	0
MAS1	4142	broad.mit.edu	37	6	160328648	160328648	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:160328648T>G	uc003qsz.2	+	1	675	c.661T>G	c.(661-663)TCC>GCC	p.S221A		NM_002377	NP_002368	P04201	MAS_HUMAN	MAS1 oncogene	221	Cytoplasmic (Potential).				anatomical structure morphogenesis|cell proliferation|protein kinase C signaling cascade	integral to plasma membrane	angiotensin type II receptor activity			ovary(2)|lung(2)	4		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.6e-06)		CACGTGGGCTTCCCATTCCTC	0.483													7	39					0	0	0	0
PLG	5340	broad.mit.edu	37	6	161127476	161127476	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:161127476G>C	uc003qtm.3	+	2	150	c.87G>C	c.(85-87)CAG>CAC	p.Q29H		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	29	PAN.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TGAATACCCAGGGGGCTTCAC	0.458													22	105					0	0	0	0
MAD1L1	8379	broad.mit.edu	37	7	2259027	2259027	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:2259027C>A	uc003slh.1	-	6	802	c.536G>T	c.(535-537)CGG>CTG	p.R179L	MAD1L1_uc003slf.1_Missense_Mutation_p.R179L|MAD1L1_uc003slg.1_Missense_Mutation_p.R179L|MAD1L1_uc010ksh.1_Missense_Mutation_p.R179L|MAD1L1_uc003sli.1_Missense_Mutation_p.R87L|MAD1L1_uc010ksi.1_Missense_Mutation_p.R132L|MAD1L1_uc010ksj.2_Missense_Mutation_p.R179L	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	179	Potential.				cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		GCGCTTCACCCGCATCTCCTG	0.632													6	14					2.0095e-06	4.12217e-06	1	0
FTSJ2	29960	broad.mit.edu	37	7	2275158	2275158	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:2275158G>C	uc003slm.2	-	3	369	c.340C>G	c.(340-342)CTT>GTT	p.L114V	MAD1L1_uc003slh.1_5'Flank|MAD1L1_uc003slf.1_5'Flank|MAD1L1_uc003slg.1_5'Flank|MAD1L1_uc010ksh.1_5'Flank|MAD1L1_uc003sli.1_5'Flank|MAD1L1_uc010ksi.1_5'Flank|MAD1L1_uc010ksj.2_5'Flank|FTSJ2_uc003slk.2_5'UTR|FTSJ2_uc003sll.2_5'UTR|FTSJ2_uc003sln.2_RNA|FTSJ2_uc003slo.2_5'UTR	NM_013393	NP_037525	Q9UI43	RRMJ2_HUMAN	FtsJ homolog 2	114					cell proliferation	mitochondrion|nucleolus	nucleic acid binding|rRNA (uridine-2'-O-)-methyltransferase activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0822)|OV - Ovarian serous cystadenocarcinoma(56;2.7e-14)		AATATGTGAAGAAGATCTACC	0.468													10	51					0	0	0	0
SNX8	29886	broad.mit.edu	37	7	2297046	2297046	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:2297046T>C	uc003slw.2	-	9	1131	c.1088A>G	c.(1087-1089)AAC>AGC	p.N363S		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	363					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		CGGCTCGCGGTTCTGCGCGGT	0.677													5	17					0	0	0	0
FOXK1	221937	broad.mit.edu	37	7	4796623	4796623	+	Splice_Site	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:4796623A>G	uc003snc.1	+	5	1061	c.1051_splice	c.e5-2	p.N351_splice	FOXK1_uc003sna.1_Splice_Site_p.N188_splice	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1						cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		GCTTCCCTGCAGAATTCTATC	0.532													7	42					0	0	0	0
RAC1	5879	broad.mit.edu	37	7	6441557	6441557	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:6441557A>G	uc003spx.2	+	5	588	c.347A>G	c.(346-348)AAA>AGA	p.K116R	RAC1_uc003spw.2_Missense_Mutation_p.K135R	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	116	GTP (By similarity).				actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	GTGGGAACTAAACTTGATCTT	0.488													4	81					0	0	0	0
MEOX2	4223	broad.mit.edu	37	7	15725621	15725621	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:15725621G>C	uc003stc.2	-	1	688	c.407C>G	c.(406-408)TCC>TGC	p.S136C	MEOX2_uc011jxw.1_Missense_Mutation_p.S136C	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	136					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.S136F(1)		ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		CGGGGTGCTGGAGCCCAAGCT	0.716													8	68					0	0	0	0
MACC1	346389	broad.mit.edu	37	7	20198324	20198324	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:20198324C>A	uc003sus.3	-	5	1969	c.1660G>T	c.(1660-1662)GGG>TGG	p.G554W	MACC1_uc010kug.2_Missense_Mutation_p.G554W	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	554	SH3.				positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						AGGGTTACCCCATAGTTGCTA	0.378													6	142					0.00116845	0.00222308	1	0
DNAH11	8701	broad.mit.edu	37	7	21779240	21779240	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:21779240C>T	uc003svc.2	+	49	7915	c.7884C>T	c.(7882-7884)GTC>GTT	p.V2628V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2628	AAA 3 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GCCAGTATGTCGCCTGCATGA	0.423									Kartagener_syndrome				13	65					0	0	0	0
CLK2P	1197	broad.mit.edu	37	7	23624993	23624993	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:23624993G>T	uc003swk.2	-	1	1154	c.504C>A	c.(502-504)ATC>ATA	p.I168I		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						TAGGACCCAAGATCCTTTCCA	0.488													9	49					1.33987e-11	3.05116e-11	1	0
CPVL	54504	broad.mit.edu	37	7	29111998	29111998	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:29111998G>A	uc003szv.2	-	8	770	c.651C>T	c.(649-651)ATC>ATT	p.I217I	CPVL_uc003szw.2_Silent_p.I217I|CPVL_uc003szx.2_Silent_p.I217I	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	217					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						TGAGGGAATGGATGAGGTGTG	0.433													13	35					0	0	0	0
SCRN1	9805	broad.mit.edu	37	7	29980412	29980412	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:29980412G>C	uc010kvp.2	-	4	829	c.625C>G	c.(625-627)CAG>GAG	p.Q209E	SCRN1_uc011jzy.1_Missense_Mutation_p.Q141E|SCRN1_uc003tak.2_Missense_Mutation_p.Q209E|SCRN1_uc011jzz.1_Missense_Mutation_p.Q209E|SCRN1_uc011kaa.1_Missense_Mutation_p.Q229E|SCRN1_uc011jzw.1_Intron|SCRN1_uc011jzx.1_Missense_Mutation_p.Q32E	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	209					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						CCTTGGCTCTGAGCGTAACTC	0.527													18	162					0	0	0	0
KBTBD2	25948	broad.mit.edu	37	7	32908969	32908969	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:32908969T>C	uc003tdb.2	-	4	2519	c.1860A>G	c.(1858-1860)CTA>CTG	p.L620L	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	620											0			GBM - Glioblastoma multiforme(11;0.0499)			ATACAGGTGGTAGTGCAACCA	0.423													8	58					0	0	0	0
ANLN	54443	broad.mit.edu	37	7	36461541	36461541	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:36461541G>C	uc003tff.2	+	13	2443	c.2239G>C	c.(2239-2241)GAA>CAA	p.E747Q	ANLN_uc011kaz.1_Missense_Mutation_p.E659Q|ANLN_uc003tfg.2_Missense_Mutation_p.E710Q|ANLN_uc010kxe.2_Missense_Mutation_p.E709Q	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	747	Localization to the cleavage furrow.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						CTGTGTTGATGAAGAACATGG	0.393													4	48					0	0	0	0
SFRP4	6424	broad.mit.edu	37	7	37955825	37955825	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:37955825G>T	uc003tfo.3	-	1	701	c.315C>A	c.(313-315)CGC>CGA	p.R105R		NM_003014	NP_003005	Q6FHJ7	SFRP4_HUMAN	secreted frizzled-related  protein 4 precursor	105	FZ.				brain development|cell differentiation|decidualization|embryo development|epithelium development|gonad development|mammary gland involution|menstrual cycle phase|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell proliferation|negative regulation of JNK cascade|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of sodium-dependent phosphate transport|phosphate ion homeostasis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epidermal cell differentiation|positive regulation of gene expression|positive regulation of receptor internalization|vasculature development|Wnt receptor signaling pathway	cell surface|cytoplasm|extracellular space|nucleus	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(1)	1						CGCAGTCGTCGCGCGCGCGTT	0.622													11	42					2.80697e-09	6.14528e-09	1	0
POM121L12	285877	broad.mit.edu	37	7	53103985	53103985	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:53103985G>T	uc003tpz.2	+	1	637	c.621G>T	c.(619-621)AGG>AGT	p.R207S		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	207											0						AGGGTGGCAGGCGGAACCTGC	0.667													17	53					2.39187e-15	5.72876e-15	1	0
ZNF479	90827	broad.mit.edu	37	7	57194383	57194383	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:57194383C>G	uc010kzo.2	-	3	353	c.82G>C	c.(82-84)GAG>CAG	p.E28Q		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	28	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TGCCATTCCTCCAGAGAGAAT	0.438													17	64					0	0	0	0
CLDN3	1365	broad.mit.edu	37	7	73184251	73184251	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:73184251C>T	uc003tzg.3	-	1	350	c.129G>A	c.(127-129)CAG>CAA	p.Q43Q	RFC2_uc011kfa.1_Intron	NM_001306	NP_001297	O15551	CLD3_HUMAN	claudin 3	43	Extracellular (Potential).				response to hypoxia	integral to plasma membrane|tight junction	structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				CCCAGATGTTCTGCGACGTGA	0.647													5	49					0	0	0	0
HIP1	3092	broad.mit.edu	37	7	75189091	75189091	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:75189091G>A	uc003uds.1	-	14	1361	c.1320C>T	c.(1318-1320)CTC>CTT	p.L440L	HIP1_uc011kfz.1_Silent_p.L317L	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	440	Potential.|pDED.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						GCTGCCTCCTGAGCTCGTCCA	0.502			T	PDGFRB	CMML								15	72					0	0	0	0
MAGI2	9863	broad.mit.edu	37	7	77824251	77824251	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:77824251G>C	uc003ugx.2	-	12	2463	c.2209C>G	c.(2209-2211)CCA>GCA	p.P737A	MAGI2_uc003ugy.2_Missense_Mutation_p.P737A|MAGI2_uc010ldx.1_Missense_Mutation_p.P346A|MAGI2_uc010ldy.1_Missense_Mutation_p.P346A	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	737						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GGCTTCCGTGGGTCAAAGGCC	0.488													11	59					0	0	0	0
SEMA3C	10512	broad.mit.edu	37	7	80394477	80394477	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:80394477G>C	uc003uhj.2	-	13	1999	c.1437C>G	c.(1435-1437)GTC>GTG	p.V479V	SEMA3C_uc011kgw.1_Silent_p.V497V	NM_006379	NP_006370	Q99985	SEM3C_HUMAN	semaphorin 3C precursor	479	Sema.				immune response|response to drug	membrane	receptor activity			ovary(1)	1						AAACCTTAAAGACTTCCAGCT	0.378													4	70					0	0	0	0
PCLO	27445	broad.mit.edu	37	7	82581261	82581261	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:82581261C>T	uc003uhx.2	-	5	9297	c.9008G>A	c.(9007-9009)GGA>GAA	p.G3003E	PCLO_uc003uhv.2_Missense_Mutation_p.G3003E|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2934					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAAAAAATGTCCAGCTTCTGC	0.408													13	253					0	0	0	0
ABCB1	5243	broad.mit.edu	37	7	87148655	87148655	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:87148655C>G	uc003uiz.1	-	24	3332	c.2914G>C	c.(2914-2916)GAG>CAG	p.E972Q	ABCB1_uc011khc.1_Missense_Mutation_p.E908Q	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	972	ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	AGAACATCCTCAAAGCTCATG	0.249													7	72					0	0	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965082	88965082	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:88965082T>C	uc011khi.1	+	4	3324	c.2786T>C	c.(2785-2787)TTA>TCA	p.L929S		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	929						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			AAAATCCTTTTAGAAAGAGTA	0.418										HNSCC(36;0.09)			39	245					0	0	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965672	88965672	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:88965672G>C	uc011khi.1	+	4	3914	c.3376G>C	c.(3376-3378)GAC>CAC	p.D1126H		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1126						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GCAGAAACCTGACAAAGTCGA	0.338										HNSCC(36;0.09)			7	82					0	0	0	0
GTPBP10	85865	broad.mit.edu	37	7	89982159	89982159	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:89982159C>G	uc003ukm.1	+	2	129	c.63C>G	c.(61-63)CTC>CTG	p.L21L	GTPBP10_uc003uki.1_Silent_p.L38L|GTPBP10_uc003ukj.1_Silent_p.L12L|GTPBP10_uc003ukk.1_RNA|GTPBP10_uc003ukl.1_RNA|GTPBP10_uc003ukn.1_Silent_p.L21L|GTPBP10_uc003uko.1_5'UTR	NM_033107	NP_149098	A4D1E9	GTPBA_HUMAN	GTP-binding protein 10 isoform 2	21					ribosome biogenesis	chromosome|nucleolus	GTP binding|GTPase activity|magnesium ion binding				0						AGCTAAGACTCTTCACCAGGG	0.393											OREG0003797	type=REGULATORY REGION|Gene=BC021573|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	6	63					0	0	0	0
GATAD1	57798	broad.mit.edu	37	7	92085756	92085756	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:92085756C>G	uc003ulx.1	+	5	969	c.690C>G	c.(688-690)TTC>TTG	p.F230L	GATAD1_uc011khq.1_RNA	NM_021167	NP_066990	Q8WUU5	GATD1_HUMAN	GATA zinc finger domain containing 1	230							sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(62;1.63e-10)|all_epithelial(64;8.33e-10)|Breast(17;0.00311)|all_lung(186;0.0498)|Lung NSC(181;0.0676)		STAD - Stomach adenocarcinoma(171;4.51e-05)|GBM - Glioblastoma multiforme(5;8.83e-05)|all cancers(6;0.000136)|Lung(22;0.123)|Epithelial(20;0.179)|LUSC - Lung squamous cell carcinoma(200;0.225)			CTGAGTATTTCAAGTCACGGT	0.453													9	150					0	0	0	0
COL1A2	1278	broad.mit.edu	37	7	94052383	94052383	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:94052383C>A	uc003ung.1	+	40	2989	c.2518C>A	c.(2518-2520)CCT>ACT	p.P840T	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	840			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	AGTTGGTCCCCCTGGCTTCGC	0.527										HNSCC(75;0.22)			72	105					1.03218e-28	2.57023e-28	1	0
ASB4	51666	broad.mit.edu	37	7	95157454	95157454	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:95157454G>C	uc011kij.1	+	3	817	c.817G>C	c.(817-819)GAA>CAA	p.E273Q	ASB4_uc003unx.2_Missense_Mutation_p.E273Q	NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	273	ANK 6.				intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			CATGATGCTGGAAGCTGGCGC	0.562											OREG0018172	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	40	60					0	0	0	0
SHFM1	7979	broad.mit.edu	37	7	96318251	96318251	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:96318251C>G	uc003uoi.2	-	3	326	c.198G>C	c.(196-198)AAG>AAC	p.K66N	SHFM1_uc010lfn.1_Intron	NM_006304	NP_006295	P60896	DSS1_HUMAN	split hand/foot malformation type 1	66					proteolysis	proteasome complex	peptidase activity|protein binding				0	all_cancers(62;4.24e-09)|all_epithelial(64;5.59e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0353)|Lung NSC(181;0.0987)					AAGTCTCCATCTTATAACCAT	0.333								Direct_reversal_of_damage|Homologous_recombination					6	74					0	0	0	0
TECPR1	25851	broad.mit.edu	37	7	97851742	97851742	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:97851742C>G	uc003upg.2	-	22	3225	c.3020G>C	c.(3019-3021)GGC>GCC	p.G1007A		NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	1007	TECPR 7.					integral to membrane	protein binding			pancreas(1)	1						GAAGGCGGAGCCGTCCCTTGC	0.677													3	9					0	0	0	0
ZNF394	84124	broad.mit.edu	37	7	99092065	99092065	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:99092065G>A	uc003uqs.2	-	3	934	c.773C>T	c.(772-774)TCT>TTT	p.S258F	ZNF394_uc003uqt.2_Missense_Mutation_p.S51F	NM_032164	NP_115540	Q53GI3	ZN394_HUMAN	zinc finger protein 394	258					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					TGCTTCAGGAGAATTTTCAAG	0.483													9	146					0	0	0	0
STAG3	10734	broad.mit.edu	37	7	99779813	99779813	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:99779813C>A	uc003utx.1	+	3	372	c.217C>A	c.(217-219)CCG>ACG	p.P73T	STAG3_uc010lgs.1_5'UTR|STAG3_uc011kjk.1_Missense_Mutation_p.P73T	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	73					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GAAAACAACACCGGTGAGTCA	0.338													10	33					0.000442599	0.000850371	1	0
LRCH4	4034	broad.mit.edu	37	7	100175789	100175789	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:100175789C>G	uc003uvj.2	-	7	994	c.941G>C	c.(940-942)GGA>GCA	p.G314A	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	314					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TACCTCATTTCCAGACCACCT	0.592													21	35					0	0	0	0
GNB2	2783	broad.mit.edu	37	7	100276365	100276365	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:100276365G>A	uc003uwb.2	+	10	1237	c.964G>A	c.(964-966)GAC>AAC	p.D322N	GNB2_uc003uwc.2_Missense_Mutation_p.D278N|GNB2_uc010lhd.2_Missense_Mutation_p.D278N|GNB2_uc010lhe.2_Missense_Mutation_p.D278N|GNB2_uc003uwd.2_Missense_Mutation_p.D222N|GNB2_uc010lhf.2_Missense_Mutation_p.D222N|GNB2_uc003uwe.2_Missense_Mutation_p.D322N|GNB2_uc003uwf.2_Missense_Mutation_p.D222N	NM_005273	NP_005264	P62879	GBB2_HUMAN	guanine nucleotide-binding protein, beta-2	322	WD 7.				cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	perinuclear region of cytoplasm|plasma membrane	GTPase activity|GTPase binding|signal transducer activity			ovary(2)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)	Ovarian(593;0.238)				CGGGGTCACCGACGATGGCAT	0.657													9	91					0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100685079	100685079	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:100685079C>G	uc003uxp.1	+	3	10435	c.10382C>G	c.(10381-10383)TCA>TGA	p.S3461*	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3461	Extracellular (Potential).|Ser-rich.|56.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACTCCATTATCAATTATGCCT	0.502													156	439					0	0	0	0
CUX1	1523	broad.mit.edu	37	7	101843412	101843412	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:101843412C>G	uc003uyx.3	+	17	2060	c.2022C>G	c.(2020-2022)ATC>ATG	p.I674M	CUX1_uc003uys.3_Missense_Mutation_p.I685M|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	674	Potential.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TCAAGTCCATCCTAGAGCAAG	0.483													8	90					0	0	0	0
RELN	5649	broad.mit.edu	37	7	103138678	103138678	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:103138678C>G	uc003vca.2	-	54	8849	c.8689G>C	c.(8689-8691)GAC>CAC	p.D2897H	RELN_uc010liz.2_Missense_Mutation_p.D2897H	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2897					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TCTTCACTGTCAAAGCGTTCC	0.373													6	71					0	0	0	0
ATXN7L1	222255	broad.mit.edu	37	7	105516849	105516849	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:105516849G>T	uc003vde.2	-	1	183	c.156C>A	c.(154-156)GAC>GAA	p.D52E	ATXN7L1_uc003vdi.2_Missense_Mutation_p.D52E|CDHR3_uc003vdk.2_5'Flank|uc003vdj.1_5'Flank	NM_020725	NP_065776	Q9ULK2	AT7L1_HUMAN	ataxin 7-like 1 isoform 1	52											0						ATTTGGCGGCGTCGATCCAGG	0.527													8	12					5.18039e-06	1.05407e-05	1	0
PIK3CG	5294	broad.mit.edu	37	7	106509407	106509407	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:106509407G>T	uc003vdv.3	+	2	1486	c.1401G>T	c.(1399-1401)CTG>CTT	p.L467L	PIK3CG_uc003vdu.2_Silent_p.L467L|PIK3CG_uc003vdw.2_Silent_p.L467L	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	467					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TGAACCTGCTGCTGATAGACC	0.532													32	62					5.6714e-07	1.18412e-06	1	0
SLC26A4	5172	broad.mit.edu	37	7	107340590	107340590	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:107340590C>T	uc003vep.2	+	15	1901	c.1677C>T	c.(1675-1677)GTC>GTT	p.V559V	SLC26A4_uc011kmb.1_Silent_p.V146V|SLC26A4_uc011kmc.1_Silent_p.V120V|SLC26A4_uc011kmd.1_Silent_p.V128V	NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	559	STAS.|Cytoplasmic (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						ATGGCAATGTCGATGGTTTTA	0.284									Pendred_syndrome				14	27					0	0	0	0
Unknown	0	broad.mit.edu	37	7	124116545	124116545	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:124116545C>G	uc011kod.1	+	1	121	c.121C>G	c.(121-123)CAT>GAT	p.H41D		NM_001085395	NP_001078864			RecName: Full=Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2;          Short=CTD phosphatase SSU72-like protein 2;          EC=3.1.3.16;																		AACTGAATCTCATGTGAGGCT	0.483													8	147					0	0	0	0
CHRM2	1129	broad.mit.edu	37	7	136699801	136699801	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:136699801C>G	uc003vtf.1	+	4	812	c.189C>G	c.(187-189)TTC>TTG	p.F63L	CHRM2_uc003vtg.1_Missense_Mutation_p.F63L|CHRM2_uc003vtj.1_Missense_Mutation_p.F63L|CHRM2_uc003vtk.1_Missense_Mutation_p.F63L|CHRM2_uc003vtl.1_Missense_Mutation_p.F63L|CHRM2_uc003vtm.1_Missense_Mutation_p.F63L|CHRM2_uc003vti.1_Missense_Mutation_p.F63L|CHRM2_uc003vto.1_Missense_Mutation_p.F63L|CHRM2_uc003vtn.1_Missense_Mutation_p.F63L|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	63	Helical; Name=2; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	ACTTTTTATTCAGCTTGGCCT	0.468													12	122					0	0	0	0
BRAF	673	broad.mit.edu	37	7	140449137	140449137	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:140449137C>G	uc003vwc.3	-	16	2003	c.1942G>C	c.(1942-1944)GAA>CAA	p.E648Q		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	648	Protein kinase.				activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	GTCATCAATTCATACAGAACA	0.363		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				8	38					0	0	0	0
AGK	55750	broad.mit.edu	37	7	141315363	141315363	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:141315363C>A	uc003vwi.2	+	8	687	c.516C>A	c.(514-516)GTC>GTA	p.V172V	AGK_uc011krg.1_RNA	NM_018238	NP_060708	Q53H12	AGK_HUMAN	acylglycerol kinase precursor	172	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	mitochondrial membrane	acylglycerol kinase activity|ATP binding|diacylglycerol kinase activity|NAD+ kinase activity			ovary(1)|breast(1)	2	Melanoma(164;0.0171)					GAAACAAAGTCCAGTAGGTTG	0.438													18	153					5.01169e-05	9.9218e-05	1	0
TAS2R38	5726	broad.mit.edu	37	7	141673226	141673226	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:141673226C>T	uc003vwx.1	-	1	348	c.264G>A	c.(262-264)CTG>CTA	p.L88L		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	88	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					AGCTGTGGTTCAGTGGTTCAC	0.527													12	140					0	0	0	0
MGAM	8972	broad.mit.edu	37	7	141736654	141736654	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:141736654C>T	uc003vwy.2	+	18	2162	c.2108C>T	c.(2107-2109)TCC>TTC	p.S703F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	703	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GGAGCTGACTCCCTGCTGTTG	0.532													15	217					0	0	0	0
CTAGE6	340307	broad.mit.edu	37	7	143453682	143453682	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:143453682T>A	uc003wdk.3	-	1	1162	c.1070A>T	c.(1069-1071)AAA>ATA	p.K357I	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	357	Potential.					integral to membrane					0	Melanoma(164;0.0903)					CTGAAGATTTTTAATATGCTC	0.294													9	45					0	0	0	0
OR6B1	135946	broad.mit.edu	37	7	143701434	143701434	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:143701434G>C	uc003wdt.1	+	1	345	c.345G>C	c.(343-345)CTG>CTC	p.L115L		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					GTGTGCTTCTGGCCGCCATGG	0.498													29	58					0	0	0	0
ARHGEF5	7984	broad.mit.edu	37	7	144060360	144060360	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:144060360G>T	uc003wel.2	+	2	716	c.598G>T	c.(598-600)GAA>TAA	p.E200*	ARHGEF5_uc003wek.2_Nonsense_Mutation_p.E200*	NM_005435	NP_005426	Q12774	ARHG5_HUMAN	rho guanine nucleotide exchange factor 5	200					intracellular signal transduction|regulation of Rho protein signal transduction	intracellular	GTP binding|protein binding|Rho guanyl-nucleotide exchange factor activity			skin(2)	2	Melanoma(164;0.14)					TGAAGGCTCTGAAAGTGGGAC	0.522													16	518					1.3612e-06	2.8186e-06	1	0
LPL	4023	broad.mit.edu	37	8	19811807	19811807	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:19811807C>T	uc003wzk.3	+	5	1088	c.718C>T	c.(718-720)CAG>TAG	p.Q240*		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor	240					fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity	p.Q240*(1)		ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	AGGTACTTTTCAGCCAGGATG	0.443													12	56					0	0	0	0
TEX15	56154	broad.mit.edu	37	8	30702709	30702709	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:30702709C>G	uc003xil.2	-	1	3825	c.3825G>C	c.(3823-3825)GTG>GTC	p.V1275V		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1275										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AAAAGTGCTTCACATTTGAAT	0.358													13	34					0	0	0	0
PRKDC	5591	broad.mit.edu	37	8	48697804	48697804	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:48697804G>A	uc003xqi.2	-	78	11034	c.10977C>T	c.(10975-10977)TTC>TTT	p.F3659F	PRKDC_uc003xqj.2_Silent_p.F3659F|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3659					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TAATGTCGTTGAAGTCACTGA	0.363								NHEJ					6	32					0	0	0	0
MOS	4342	broad.mit.edu	37	8	57026507	57026507	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:57026507C>A	uc011leb.1	-	1	35	c.35G>T	c.(34-36)CGG>CTG	p.R12L		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	12							ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			AAACTCGCTCCGGAGGTAGGG	0.677													7	32					0.00307968	0.00575353	1	0
TOX	9760	broad.mit.edu	37	8	59872534	59872534	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:59872534C>G	uc003xtw.1	-	2	357	c.136G>C	c.(136-138)GAG>CAG	p.E46Q		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	46						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				TGGCTCGGCTCTGTCATGCTC	0.368													3	55					0	0	0	0
EYA1	2138	broad.mit.edu	37	8	72127676	72127676	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:72127676A>G	uc003xys.3	-	15	1830	c.1543T>C	c.(1543-1545)TAT>CAT	p.Y515H	EYA1_uc003xyr.3_Missense_Mutation_p.Y480H|EYA1_uc003xyt.3_Missense_Mutation_p.Y482H|EYA1_uc010lzf.2_Missense_Mutation_p.Y442H|EYA1_uc003xyu.2_Missense_Mutation_p.Y515H|EYA1_uc011lfe.1_Missense_Mutation_p.Y509H|EYA1_uc003xyv.2_Missense_Mutation_p.Y393H	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	515					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CCTAACCCATACAGCAGGACT	0.348													42	68					0	0	0	0
KCNB2	9312	broad.mit.edu	37	8	73849296	73849296	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:73849296C>G	uc003xzb.2	+	3	2294	c.1706C>G	c.(1705-1707)GCA>GGA	p.A569G		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	569	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			AGGCCATCTGCATATGAAGAA	0.507													7	78					0	0	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617387	77617387	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:77617387G>C	uc003yav.2	+	2	1451	c.1064G>C	c.(1063-1065)GGA>GCA	p.G355A	ZFHX4_uc003yat.1_Missense_Mutation_p.G355A|ZFHX4_uc003yau.1_Missense_Mutation_p.G355A|ZFHX4_uc003yaw.1_Missense_Mutation_p.G355A	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	355						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AACCTCATAGGACCCGATCCA	0.448										HNSCC(33;0.089)			13	98					0	0	0	0
ZFHX4	79776	broad.mit.edu	37	8	77765696	77765696	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:77765696C>G	uc003yav.2	+	10	6791	c.6404C>G	c.(6403-6405)ACG>AGG	p.T2135R	ZFHX4_uc003yau.1_Missense_Mutation_p.T2180R|ZFHX4_uc003yaw.1_Missense_Mutation_p.T2135R	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2135	Homeobox 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TTTAGAAATACGCTTTTTAAG	0.373										HNSCC(33;0.089)			55	90					0	0	0	0
RUNX1T1	862	broad.mit.edu	37	8	92983035	92983035	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:92983035G>C	uc003yfd.2	-	10	1474	c.1390C>G	c.(1390-1392)CTG>GTG	p.L464V	RUNX1T1_uc003yfc.1_Missense_Mutation_p.L437V|RUNX1T1_uc003yfe.1_Missense_Mutation_p.L427V|RUNX1T1_uc010mao.2_Missense_Mutation_p.L437V|RUNX1T1_uc011lgi.1_Missense_Mutation_p.L475V|RUNX1T1_uc010man.1_Missense_Mutation_p.L89V|RUNX1T1_uc003yfb.1_Missense_Mutation_p.L427V	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	464					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.A464S(1)		lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GCCTTCTGCAGCTCCGTCATC	0.597													3	49					0	0	0	0
ESRP1	54845	broad.mit.edu	37	8	95680467	95680467	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:95680467G>A	uc003ygq.3	+	10	1405	c.1222G>A	c.(1222-1224)GAA>AAA	p.E408K	ESRP1_uc003ygr.3_Missense_Mutation_p.E408K|ESRP1_uc003ygs.3_Missense_Mutation_p.E408K|ESRP1_uc003ygt.3_Missense_Mutation_p.E408K|ESRP1_uc003ygu.3_Missense_Mutation_p.E408K|ESRP1_uc003ygv.2_Missense_Mutation_p.E248K|ESRP1_uc003ygw.2_Missense_Mutation_p.E248K	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	408					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						CACAGCAGCTGAAGTTCAGCA	0.373													8	55					0	0	0	0
MTERFD1	51001	broad.mit.edu	37	8	97270606	97270606	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:97270606C>G	uc003yhs.1	-	2	391	c.313G>C	c.(313-315)GAT>CAT	p.D105H	MTERFD1_uc003yhr.1_5'Flank|MTERFD1_uc010mbd.1_Missense_Mutation_p.D105H	NM_015942	NP_057026	Q96E29	MTER1_HUMAN	MTERF domain containing 1 precursor	105					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion	transcription regulatory region DNA binding			ovary(1)	1	Breast(36;5.16e-05)					AGCTCAGAATCAAAGCTGGAT	0.413													6	36					0	0	0	0
NACAP1	83955	broad.mit.edu	37	8	102381147	102381147	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:102381147G>A	uc003ykc.1	+	1	27	c.10G>A	c.(10-12)GAA>AAA	p.E4K	NACAP1_uc010mbs.1_RNA	NR_002182				SubName: Full=NACAP1 protein;												0						AATGCCTGGCGAAGCCACAGA	0.567													12	24					0	0	0	0
OXR1	55074	broad.mit.edu	37	8	107715290	107715290	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:107715290G>A	uc011lht.1	+	7	934	c.835G>A	c.(835-837)GAT>AAT	p.D279N	OXR1_uc003ymf.2_Missense_Mutation_p.D278N|OXR1_uc011lhu.1_Missense_Mutation_p.D271N|OXR1_uc010mcg.2_Intron|OXR1_uc003ymg.1_Missense_Mutation_p.D211N|OXR1_uc003ymi.1_Missense_Mutation_p.D190N	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	279					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			AGAAATTTTGGATAGCAAAAT	0.353													17	27					0	0	0	0
OXR1	55074	broad.mit.edu	37	8	107763141	107763141	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:107763141A>G	uc011lht.1	+	16	2696	c.2597A>G	c.(2596-2598)CAA>CGA	p.Q866R	OXR1_uc003ymf.2_Missense_Mutation_p.Q838R|OXR1_uc011lhu.1_Missense_Mutation_p.Q831R|OXR1_uc010mcg.2_RNA|OXR1_uc010mch.2_Missense_Mutation_p.Q494R|OXR1_uc003ymk.2_Missense_Mutation_p.Q235R|OXR1_uc003yml.2_Missense_Mutation_p.Q208R	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	866					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			TTCTTTATCCAAGATATTGAA	0.388													18	58					0	0	0	0
TRHR	7201	broad.mit.edu	37	8	110100017	110100017	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:110100017C>A	uc003ymz.3	+	1	292	c.276C>A	c.(274-276)GTC>GTA	p.V92V		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	92	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			GTTCCTGGGTCTATGGCTATG	0.483													43	83					3.05275e-18	7.40238e-18	1	0
NUDCD1	84955	broad.mit.edu	37	8	110293364	110293364	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:110293364C>G	uc003ynb.3	-	6	972	c.861G>C	c.(859-861)TTG>TTC	p.L287F	NUDCD1_uc003yna.2_Missense_Mutation_p.L258F|NUDCD1_uc010mcl.2_Missense_Mutation_p.L200F|NUDCD1_uc010mcm.1_Missense_Mutation_p.L200F	NM_032869	NP_116258	Q96RS6	NUDC1_HUMAN	NudC domain containing 1 isoform 1	287	CS.									ovary(1)|breast(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;1.56e-12)			TGGTTACTGTCAAATCATCTT	0.363													4	51					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110420425	110420425	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:110420425C>G	uc003yne.2	+	18	2065	c.1961C>G	c.(1960-1962)TCA>TGA	p.S654*		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	654	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTATGGTCATCAGAAGCTGAA	0.448										HNSCC(38;0.096)			10	37					0	0	0	0
KCNV1	27012	broad.mit.edu	37	8	110984839	110984839	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:110984839G>T	uc003ynr.3	-	2	981	c.639C>A	c.(637-639)GGC>GGA	p.G213G	KCNV1_uc010mcw.2_Silent_p.G213G	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	213	Helical; Name=Segment S1; (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			TGGAGATGACGCCAAAGATAC	0.522													25	32					2.39556e-15	5.7298e-15	1	0
CSMD3	114788	broad.mit.edu	37	8	113243846	113243846	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:113243846C>T	uc003ynu.2	-	69	10915	c.10756G>A	c.(10756-10758)GAT>AAT	p.D3586N	CSMD3_uc003yns.2_Missense_Mutation_p.D2788N|CSMD3_uc003ynt.2_Missense_Mutation_p.D3546N|CSMD3_uc011lhx.1_Missense_Mutation_p.D3417N	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3586	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTAGCTCCATCAGGCTCAGCA	0.323										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			9	122					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	113562955	113562955	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:113562955G>T	uc003ynu.2	-	27	4668	c.4509C>A	c.(4507-4509)ATC>ATA	p.I1503I	CSMD3_uc003yns.2_Silent_p.I775I|CSMD3_uc003ynt.2_Silent_p.I1463I|CSMD3_uc011lhx.1_Silent_p.I1399I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1503	Extracellular (Potential).|CUB 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGTCAAACTGGATGGTTACTA	0.343										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	75					5.4927e-09	1.18918e-08	1	0
TRPS1	7227	broad.mit.edu	37	8	116599354	116599354	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:116599354C>A	uc003ynz.2	-	4	2994	c.2535G>T	c.(2533-2535)TTG>TTT	p.L845F	TRPS1_uc011lhy.1_Missense_Mutation_p.L849F|TRPS1_uc003yny.2_Missense_Mutation_p.L858F|TRPS1_uc010mcy.2_Missense_Mutation_p.L845F	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	845					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			TTTCCACAGCCAAGCCATAAA	0.597									Langer-Giedion_syndrome				5	60					3.86212e-05	7.65457e-05	1	0
EXT1	2131	broad.mit.edu	37	8	118849376	118849376	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:118849376C>A	uc003yok.1	-	2	1800	c.1027G>T	c.(1027-1029)GGG>TGG	p.G343W		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	343	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			CTGAAGGACCCAAGCCTGCGA	0.493			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				16	153					1.01871e-10	2.28722e-10	1	0
COL14A1	7373	broad.mit.edu	37	8	121295907	121295907	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:121295907A>G	uc003yox.2	+	32	4122	c.3857A>G	c.(3856-3858)TAC>TGC	p.Y1286C	COL14A1_uc003yoz.2_Missense_Mutation_p.Y251C	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1286	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CCCTCCGACTACACAATCAGT	0.388													41	93					0	0	0	0
FAM135B	51059	broad.mit.edu	37	8	139263149	139263149	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:139263149G>T	uc003yuy.2	-	6	648	c.477C>A	c.(475-477)TTC>TTA	p.F159L	FAM135B_uc003yux.2_Missense_Mutation_p.F60L|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	159										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CAGACAGGTGGAAATAGTCGA	0.592										HNSCC(54;0.14)			24	138					2.52088e-20	6.15514e-20	1	0
COL22A1	169044	broad.mit.edu	37	8	139729092	139729092	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:139729092G>A	uc003yvd.2	-	28	2823	c.2376C>T	c.(2374-2376)GGC>GGT	p.G792G	COL22A1_uc011ljo.1_Silent_p.G92G	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	792	Pro-rich.|Gly-rich.|Collagen-like 6.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGCCTGCCAGGCCCTGCTCCC	0.368										HNSCC(7;0.00092)			13	47					0	0	0	0
COL22A1	169044	broad.mit.edu	37	8	139790645	139790645	+	Missense_Mutation	SNP	G	T	T	rs149741596	by1000genomes	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:139790645G>T	uc003yvd.2	-	15	2156	c.1709C>A	c.(1708-1710)CCC>CAC	p.P570H		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	570	Pro-rich.|Gly-rich.|Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TGGTCCTTGGGGCCCCTGCAG	0.562										HNSCC(7;0.00092)			7	30					0.00448238	0.00834748	1	0
LY6K	54742	broad.mit.edu	37	8	143783130	143783130	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:143783130G>C	uc011ljv.1	+	2	633	c.216G>C	c.(214-216)GTG>GTC	p.V72V	LY6K_uc011ljw.1_Silent_p.V72V|LY6K_uc011ljx.1_Silent_p.V72V	NM_017527	NP_059997	Q17RY6	LY6K_HUMAN	lymphocyte antigen 6 complex, locus K isoform 1	72	UPAR/Ly6.					anchored to membrane|cytoplasm|extracellular region|nucleolus|plasma membrane				central_nervous_system(1)	1	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					TAGCGGCCGTGAGTGAGTATC	0.483													3	16					0	0	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145773627	145773627	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr8:145773627G>A	uc003zdt.1	-	6	1398	c.843C>T	c.(841-843)CTC>CTT	p.L281L	ARHGAP39_uc011llk.1_Silent_p.L281L|ARHGAP39_uc003zds.1_Silent_p.L281L	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	281	Pro-rich.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						TGCTCCCTGGGAGCTCGGCCC	0.692													5	18					0	0	0	0
KIAA1432	57589	broad.mit.edu	37	9	5754839	5754839	+	Splice_Site	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:5754839A>T	uc003zji.2	+	14	1459	c.1366_splice	c.e14-2	p.E456_splice	KIAA1432_uc003zjh.2_Splice_Site_p.E456_splice|KIAA1432_uc003zjl.3_Splice_Site_p.E419_splice|KIAA1432_uc003zjj.1_Splice_Site	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a							integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		ttttattttaaGGAGCAAAAT	0.294													6	16					0	0	0	0
PTPRD	5789	broad.mit.edu	37	9	8517884	8517884	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:8517884G>T	uc003zkk.2	-	20	2218	c.1507C>A	c.(1507-1509)CTT>ATT	p.L503I	PTPRD_uc003zkp.2_Missense_Mutation_p.L503I|PTPRD_uc003zkq.2_Missense_Mutation_p.L503I|PTPRD_uc003zkr.2_Missense_Mutation_p.L497I|PTPRD_uc003zks.2_Missense_Mutation_p.L493I|PTPRD_uc003zkl.2_Missense_Mutation_p.L503I|PTPRD_uc003zkm.2_Missense_Mutation_p.L490I|PTPRD_uc003zkn.2_Missense_Mutation_p.L503I|PTPRD_uc003zko.2_Missense_Mutation_p.L500I	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	503	Fibronectin type-III 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCACTTGAAAGGGGACCATCT	0.468										TSP Lung(15;0.13)			15	44					5.35267e-07	1.1189e-06	1	0
FAM154A	158297	broad.mit.edu	37	9	18928826	18928826	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:18928826C>T	uc003zni.1	-	4	927	c.649G>A	c.(649-651)GAG>AAG	p.E217K	FAM154A_uc010mip.1_Missense_Mutation_p.E25K	NM_153707	NP_714918	Q8IYX7	F154A_HUMAN	hypothetical protein LOC158297	217										pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.53e-16)		AAGCGCTTCTCCACGGGGTGG	0.512													9	51					0	0	0	0
ACO1	48	broad.mit.edu	37	9	32418476	32418476	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:32418476A>G	uc003zqw.3	+	6	780	c.625A>G	c.(625-627)ACC>GCC	p.T209A	ACO1_uc010mjh.1_Missense_Mutation_p.T43A|ACO1_uc003zqx.3_Missense_Mutation_p.T209A|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	209					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		CTCGCACACTACCATGATTGA	0.433													42	140					0	0	0	0
ACO1	48	broad.mit.edu	37	9	32420929	32420929	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:32420929G>A	uc003zqw.3	+	8	1029	c.874G>A	c.(874-876)GAC>AAC	p.D292N	ACO1_uc010mjh.1_Missense_Mutation_p.D126N|ACO1_uc003zqx.3_Missense_Mutation_p.D292N|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	292					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		GTCCATTGCTGACCGAGCTAC	0.502													9	163					0	0	0	0
TLN1	7094	broad.mit.edu	37	9	35707190	35707190	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:35707190C>G	uc003zxt.2	-	37	5188	c.4834G>C	c.(4834-4836)GGA>CGA	p.G1612R		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1612	Interaction with SYNM.				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TGGATGAGTCCCCCGGCACTC	0.637													11	48					0	0	0	0
TLN1	7094	broad.mit.edu	37	9	35716451	35716451	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:35716451C>A	uc003zxt.2	-	20	2915	c.2561G>T	c.(2560-2562)CGC>CTC	p.R854L		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	854					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TAAGAGCTTGCGGGAGTTCTC	0.567													22	86					1.96292e-10	4.39595e-10	1	0
NPR2	4882	broad.mit.edu	37	9	35801681	35801681	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:35801681G>T	uc003zyd.2	+	8	1478	c.1478G>T	c.(1477-1479)CGT>CTT	p.R493L	NPR2_uc010mlb.2_Missense_Mutation_p.R493L	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	493	Cytoplasmic (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	ATGTTGTGGCGTATTCGCTGG	0.552													23	45					1.64293e-13	3.86133e-13	1	0
FRMPD1	22844	broad.mit.edu	37	9	37740292	37740292	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:37740292G>T	uc004aag.1	+	15	1811	c.1767G>T	c.(1765-1767)GCG>GCT	p.A589A	FRMPD1_uc004aah.1_Silent_p.A589A|FRMPD1_uc011lqm.1_Silent_p.A411A|FRMPD1_uc011lqn.1_Silent_p.A458A	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	589						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		AGTCCGAGGCGTCCGACTCAG	0.647													8	37					0.000157383	0.000305386	1	0
FAM75A3	727830	broad.mit.edu	37	9	40702830	40702830	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:40702830C>G	uc010mmj.2	+	4	516	c.487C>G	c.(487-489)CAG>GAG	p.Q163E		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	163	Pro-rich.					integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CAAGCATCCTCAGGATCTGGC	0.587													9	385					0	0	0	0
FAM75A6	389730	broad.mit.edu	37	9	43626924	43626924	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:43626924C>A	uc011lrb.1	-	4	1792	c.1763G>T	c.(1762-1764)AGT>ATT	p.S588I		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	588						integral to membrane					0						GAGTTCAGGACTGACTGGAAA	0.493													13	128					2.37509e-13	5.5598e-13	1	0
TMEM2	23670	broad.mit.edu	37	9	74360399	74360399	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:74360399C>A	uc011lsa.1	-	4	1109	c.569G>T	c.(568-570)GGA>GTA	p.G190V	TMEM2_uc010mos.2_Missense_Mutation_p.G190V|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	190	G8.					integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		TTTTTCTGCTCCAATATGAAG	0.413													34	62					1.26612e-14	3.00382e-14	1	0
TLE4	7091	broad.mit.edu	37	9	82227616	82227616	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:82227616C>G	uc004ald.2	+	5	1126	c.277C>G	c.(277-279)CCT>GCT	p.P93A	TLE4_uc004alc.2_Missense_Mutation_p.P100A|TLE4_uc010mpr.2_5'UTR|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Missense_Mutation_p.P93A|TLE4_uc010mps.2_Missense_Mutation_p.P93A|TLE4_uc004alf.2_Missense_Mutation_p.P38A	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						ACAAGTCATTCCTTTCCTGTC	0.418													6	88					0	0	0	0
FLJ46321	389763	broad.mit.edu	37	9	84606461	84606461	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:84606461G>T	uc004amn.2	+	4	1123	c.1076G>T	c.(1075-1077)TGG>TTG	p.W359L		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	359						integral to membrane					0						TTCACCTGGTGGCAGCCTCAT	0.478													15	85					1.02788e-11	2.34678e-11	1	0
GKAP1	80318	broad.mit.edu	37	9	86414160	86414160	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:86414160G>C	uc004amy.2	-	4	796	c.300C>G	c.(298-300)AAC>AAG	p.N100K	GKAP1_uc004amz.2_Missense_Mutation_p.N100K|GKAP1_uc011lsu.1_RNA	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	100					signal transduction	Golgi apparatus					0						TCTGTACTGGGTTTGACAATG	0.363													35	134					0	0	0	0
KIF27	55582	broad.mit.edu	37	9	86452160	86452160	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:86452160T>C	uc004ana.2	-	18	4106	c.3962A>G	c.(3961-3963)AAT>AGT	p.N1321S	KIF27_uc010mpw.2_Missense_Mutation_p.N1255S|KIF27_uc010mpx.2_Missense_Mutation_p.N1224S	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	1321					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						TTCTGTTTTATTCTCATTACC	0.418													24	24					0	0	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536023	90536023	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:90536023C>T	uc010mqi.2	+	4	1230	c.1201C>T	c.(1201-1203)CAG>TAG	p.Q401*	FAM75C1_uc004apq.3_Nonsense_Mutation_p.Q384*	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						ACCTGAAACTCAGCACCCTGA	0.498													9	331					0	0	0	0
ALDOB	229	broad.mit.edu	37	9	104187801	104187801	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:104187801T>A	uc004bbk.2	-	7	815	c.733A>T	c.(733-735)ACT>TCT	p.T245S		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	245					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TGTTCTGGAGTATACTTCTTG	0.507													22	78					0	0	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112899231	112899231	+	Silent	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:112899231A>G	uc004bei.2	+	9	2295	c.2103A>G	c.(2101-2103)GCA>GCG	p.A701A	PALM2-AKAP2_uc004bek.3_Silent_p.A469A|PALM2-AKAP2_uc004bej.3_Silent_p.A469A|PALM2-AKAP2_uc004bel.1_Silent_p.A279A|AKAP2_uc011lwi.1_Silent_p.A327A|AKAP2_uc004bem.2_Silent_p.A327A|PALM2-AKAP2_uc010mtw.1_Silent_p.A287A|AKAP2_uc011lwj.1_Silent_p.A238A|PALM2-AKAP2_uc004ben.2_Silent_p.A238A	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	238	Potential.						enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						CTGGCATTGCAGCAAAATGGT	0.522													12	39					0	0	0	0
SVEP1	79987	broad.mit.edu	37	9	113208279	113208279	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:113208279C>G	uc010mtz.2	-	26	4638	c.4301G>C	c.(4300-4302)GGC>GCC	p.G1434A	SVEP1_uc010mua.1_Missense_Mutation_p.G1434A	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1434	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TCCATAGATGCCAGAAACTTC	0.423													4	28					0	0	0	0
DBC1	1620	broad.mit.edu	37	9	121976297	121976297	+	Silent	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:121976297C>G	uc004bkc.2	-	6	1278	c.822G>C	c.(820-822)CCG>CCC	p.P274P	DBC1_uc004bkd.2_Silent_p.P274P	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	274					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						AGTTGCACTGCGGAAACTCCT	0.552													18	88					0	0	0	0
DBC1	1620	broad.mit.edu	37	9	122075438	122075438	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:122075438T>C	uc004bkc.2	-	2	652	c.196A>G	c.(196-198)ACA>GCA	p.T66A	DBC1_uc004bkd.2_Missense_Mutation_p.T66A	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	66					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TATCTGGTTGTAAATCCTTGA	0.443													5	31					0	0	0	0
CEP110	11064	broad.mit.edu	37	9	123930380	123930380	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:123930380C>T	uc004bkx.1	+	36	5882	c.5851C>T	c.(5851-5853)CAG>TAG	p.Q1951*	CEP110_uc004blb.1_Nonsense_Mutation_p.Q620*|CEP110_uc010mvp.1_5'UTR	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1951	Required for centrosome localization.|Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						TAAGATGTTTCAGAGACTCCA	0.378													4	16					0	0	0	0
RC3H2	54542	broad.mit.edu	37	9	125643074	125643074	+	Splice_Site	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:125643074C>A	uc010mwc.1	-	6	1001	c.760_splice	c.e6-1	p.V254_splice	RC3H2_uc004bnc.2_Splice_Site|RC3H2_uc004bnd.1_Splice_Site_p.V254_splice|RC3H2_uc004bne.3_Splice_Site_p.V254_splice|RC3H2_uc011lzf.1_Translation_Start_Site|RC3H2_uc011lzg.1_Splice_Site_p.V254_splice|SNORD90_uc004bnf.1_5'Flank	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2							cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						TTTTGGTAACCTAAAAAATAG	0.388													4	23					0.00024832	0.000480778	1	0
HSPA5	3309	broad.mit.edu	37	9	127998972	127998972	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:127998972C>T	uc004bpn.2	-	8	2120	c.1864G>A	c.(1864-1866)GAA>AAA	p.E622K		NM_005347	NP_005338	P11021	GRP78_HUMAN	heat shock 70kDa protein 5	622					anti-apoptosis|cellular response to glucose starvation|ER-associated protein catabolic process|platelet activation|platelet degranulation|regulation of protein folding in endoplasmic reticulum	cell surface|endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|integral to endoplasmic reticulum membrane|melanosome|midbody|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|calcium ion binding|caspase inhibitor activity|chaperone binding|misfolded protein binding|protein binding, bridging|protein domain specific binding|ubiquitin protein ligase binding|unfolded protein binding			ovary(3)|skin(1)	4					Antihemophilic Factor(DB00025)	TCTTCCAGTTCCTTCTTCTTA	0.418										Prostate(1;0.17)			32	47					0	0	0	0
CDK9	1025	broad.mit.edu	37	9	130551532	130551532	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:130551532G>A	uc004bse.2	+	7	952	c.829G>A	c.(829-831)GAC>AAC	p.D277N		NM_001261	NP_001252	P50750	CDK9_HUMAN	cyclin-dependent kinase 9	277	Protein kinase.				cell proliferation|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	transcription elongation factor complex	ATP binding|cyclin-dependent protein kinase activity|DNA binding|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(1)	1						GAAGGTGAAGGACAGGCTGAA	0.602													12	31					0	0	0	0
PRRX2	51450	broad.mit.edu	37	9	132482945	132482945	+	Missense_Mutation	SNP	C	T	T	rs144448846		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:132482945C>T	uc004byh.2	+	3	745	c.518C>T	c.(517-519)TCG>TTG	p.S173L		NM_016307	NP_057391	Q99811	PRRX2_HUMAN	paired related homeobox 2	173						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1		Ovarian(14;0.00556)				CGCTCTGCCTCGCTGCTCAAG	0.592													17	96					0	0	0	0
LAMC3	10319	broad.mit.edu	37	9	133945219	133945219	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:133945219C>T	uc004caa.1	+	17	3149	c.3051C>T	c.(3049-3051)TAC>TAT	p.Y1017Y		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	1017	Domain II and I.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		CGTCCTGCTACGCCCTGGTGA	0.587													3	5					0	0	0	0
NUP214	8021	broad.mit.edu	37	9	134073156	134073156	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:134073156C>G	uc004cag.2	+	29	4386	c.4275C>G	c.(4273-4275)ATC>ATG	p.I1425M	NUP214_uc004cah.2_Missense_Mutation_p.I1415M|NUP214_uc004cai.2_Missense_Mutation_p.I855M|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.I251M|NUP214_uc011mcf.1_Missense_Mutation_p.I202M|NUP214_uc010mzh.1_Translation_Start_Site|NUP214_uc010mzi.1_Translation_Start_Site	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1425	Pro/Ser/Thr-rich.|11 X 5 AA approximate repeats.|18 X 4 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CTGGGGTCATCAGTTTTGGTG	0.537			T	DEK|SET|ABL1	AML|T-ALL								17	102					0	0	0	0
NUP214	8021	broad.mit.edu	37	9	134073548	134073548	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:134073548C>G	uc004cag.2	+	29	4778	c.4667C>G	c.(4666-4668)TCT>TGT	p.S1556C	NUP214_uc004cah.2_Missense_Mutation_p.S1546C|NUP214_uc004cai.2_Missense_Mutation_p.S986C|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.S382C|NUP214_uc011mcf.1_Missense_Mutation_p.S333C|NUP214_uc010mzh.1_Missense_Mutation_p.S70C|NUP214_uc010mzi.1_Missense_Mutation_p.S70C	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1556	Pro/Ser/Thr-rich.|11 X 3 AA approximate repeats.|11 X 5 AA approximate repeats.|18 X 4 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		ACTGCAGCATCTAGTACTAGT	0.557			T	DEK|SET|ABL1	AML|T-ALL								10	65					0	0	0	0
NUP214	8021	broad.mit.edu	37	9	134073559	134073559	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:134073559C>A	uc004cag.2	+	29	4789	c.4678C>A	c.(4678-4680)CTT>ATT	p.L1560I	NUP214_uc004cah.2_Missense_Mutation_p.L1550I|NUP214_uc004cai.2_Missense_Mutation_p.L990I|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.L386I|NUP214_uc011mcf.1_Missense_Mutation_p.L337I|NUP214_uc010mzh.1_Missense_Mutation_p.L74I|NUP214_uc010mzi.1_Missense_Mutation_p.L74I	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1560	Pro/Ser/Thr-rich.|11 X 3 AA approximate repeats.|11 X 5 AA approximate repeats.|18 X 4 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		TAGTACTAGTCTTGTAGCACT	0.562			T	DEK|SET|ABL1	AML|T-ALL								9	63					5.4927e-09	1.18918e-08	1	0
SEC16A	9919	broad.mit.edu	37	9	139371758	139371758	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:139371758G>A	uc004chx.2	-	3	619	c.310C>T	c.(310-312)CAG>TAG	p.Q104*	SEC16A_uc004chv.3_5'Flank|SEC16A_uc004chw.2_Nonsense_Mutation_p.Q104*|SEC16A_uc010nbn.2_Nonsense_Mutation_p.Q104*|SEC16A_uc010nbo.1_Nonsense_Mutation_p.Q104*	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CAGGGTCCCTGAGAGCTATCT	0.592													11	93					0	0	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407736	1407736	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:1407736C>T	uc010nct.2	+	7	750	c.428C>T	c.(427-429)ACG>ATG	p.T143M	CSF2RA_uc011mhb.1_Missense_Mutation_p.T143M|CSF2RA_uc004cpq.2_Missense_Mutation_p.T143M|CSF2RA_uc004cpn.2_Missense_Mutation_p.T143M|CSF2RA_uc004cpo.2_Missense_Mutation_p.T143M|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Missense_Mutation_p.T10M|CSF2RA_uc004cpp.2_Missense_Mutation_p.T143M|CSF2RA_uc010ncv.2_Missense_Mutation_p.T143M|CSF2RA_uc004cpr.2_Missense_Mutation_p.T143M	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	143	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	AGGGGTCCGACGGCCCCCCGT	0.473													25	134					0	0	0	0
WWC3	55841	broad.mit.edu	37	X	10092369	10092369	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:10092369G>T	uc004csx.3	+	13	2014	c.1816G>T	c.(1816-1818)GTG>TTG	p.V606L	WWC3_uc010nds.2_Missense_Mutation_p.V270L|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	606										ovary(4)	4						CCAGATCCACGTGGGACTCCT	0.607													23	43					9.95505e-16	2.39084e-15	1	0
ARHGAP6	395	broad.mit.edu	37	X	11272776	11272776	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:11272776C>G	uc004cup.1	-	2	1513	c.640G>C	c.(640-642)GTC>CTC	p.V214L	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Missense_Mutation_p.V214L|ARHGAP6_uc004cum.1_Missense_Mutation_p.V11L|ARHGAP6_uc004cun.1_Missense_Mutation_p.V34L|ARHGAP6_uc010neb.1_Missense_Mutation_p.V36L|ARHGAP6_uc011mif.1_Missense_Mutation_p.V11L	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	214					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						TGGATGGGGACTGACCTCAGC	0.488													9	88					0	0	0	0
TLR8	51311	broad.mit.edu	37	X	12937728	12937728	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:12937728C>A	uc004cve.2	+	2	637	c.569C>A	c.(568-570)ACT>AAT	p.T190N	TLR8_uc004cvd.2_Missense_Mutation_p.T208N	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	190	Extracellular (Potential).|LRR 3.				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						TGCGAGAAAACTAACATAGAA	0.358													27	75					7.92952e-12	1.81276e-11	1	0
AP1S2	8905	broad.mit.edu	37	X	15863569	15863569	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:15863569C>A	uc004cxi.2	-	4	649	c.359G>T	c.(358-360)GGG>GTG	p.G120V	AP1S2_uc004cxh.2_Missense_Mutation_p.G120V|AP1S2_uc010nex.2_Missense_Mutation_p.G162V|AP1S2_uc011mis.1_Missense_Mutation_p.G162V|AP1S2_uc011mit.1_Missense_Mutation_p.G162V|AP1S2_uc011miu.1_Missense_Mutation_p.G162V	NM_003916	NP_003907	P56377	AP1S2_HUMAN	adaptor-related protein complex 1 sigma 2	120					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	AP-type membrane coat adaptor complex|coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein transporter activity				0	Hepatocellular(33;0.183)					CTGAACTTCCCCTCCCAAAAG	0.338													21	73					5.35047e-06	1.08741e-05	1	0
NHS	4810	broad.mit.edu	37	X	17746379	17746379	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:17746379G>T	uc004cxx.2	+	6	4428	c.4090G>T	c.(4090-4092)GCC>TCC	p.A1364S	NHS_uc011mix.1_Missense_Mutation_p.A1385S|NHS_uc004cxy.2_Missense_Mutation_p.A1208S|NHS_uc004cxz.2_Missense_Mutation_p.A1187S|NHS_uc004cya.2_Missense_Mutation_p.A1087S	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	1364						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					AGGTATTTCAGCCAAAAGTGC	0.403													17	36					5.3912e-06	1.09316e-05	1	0
BEND2	139105	broad.mit.edu	37	X	18221663	18221663	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:18221663G>T	uc004cyj.3	-	5	1019	c.865C>A	c.(865-867)CCA>ACA	p.P289T	BEND2_uc010nfb.2_Missense_Mutation_p.P289T	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	289										ovary(3)|kidney(1)|central_nervous_system(1)	5						GCTCTACCTGGGCCCACATTT	0.418													28	95					9.39395e-14	2.21375e-13	1	0
RS1	6247	broad.mit.edu	37	X	18660202	18660202	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:18660202G>T	uc004cyo.2	-	6	632	c.597C>A	c.(595-597)ATC>ATA	p.I199I	CDKL5_uc004cym.2_Intron|CDKL5_uc004cyn.2_Intron	NM_000330	NP_000321	O15537	XLRS1_HUMAN	X-linked juvenile retinoschisis protein	199	F5/8 type C.		I -> T (in XLRS1).		cell adhesion|multicellular organismal development|response to stimulus|visual perception	extracellular space				ovary(2)	2	Hepatocellular(33;0.183)					GGATGAGGCGGATGAAGCGGG	0.617													22	72					7.87624e-14	1.86108e-13	1	0
PPEF1	5475	broad.mit.edu	37	X	18842187	18842187	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:18842187G>A	uc004cyq.2	+	17	2129	c.1648G>A	c.(1648-1650)GAA>AAA	p.E550K	PPEF1_uc004cyp.2_Missense_Mutation_p.E522K|PPEF1_uc004cyr.2_Missense_Mutation_p.E488K|PPEF1_uc004cys.2_Missense_Mutation_p.E550K|PPEF1_uc011mja.1_Missense_Mutation_p.E485K|PPEF1_uc011mjb.1_Missense_Mutation_p.E494K	NM_006240	NP_006231	O14829	PPE1_HUMAN	protein phosphatase with EF hand calcium-binding	550					detection of stimulus involved in sensory perception|protein dephosphorylation		calcium ion binding|iron ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity				0	Hepatocellular(33;0.183)					TATCCGCATTGAAAAACCTGT	0.418													9	56					0	0	0	0
MAP3K15	389840	broad.mit.edu	37	X	19475138	19475138	+	Splice_Site	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:19475138C>A	uc004czk.1	-	5	780	c.-857_splice	c.e5-1		MAP3K15_uc004czj.1_Splice_Site	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase								ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					CATCATAGTCCTGTTGGCAAG	0.458													6	25					2.0095e-06	4.12217e-06	1	0
SH3KBP1	30011	broad.mit.edu	37	X	19854368	19854368	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:19854368G>T	uc004czm.2	-	2	353	c.37C>A	c.(37-39)CAG>AAG	p.Q13K		NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	13	SH3 1.				apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						TCATCGTGCTGGGCCTGGTAG	0.532													44	110					1.32136e-16	3.18211e-16	1	0
KLHL34	257240	broad.mit.edu	37	X	21675204	21675204	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:21675204G>T	uc004czz.1	-	1	1245	c.703C>A	c.(703-705)CGC>AGC	p.R235S		NM_153270	NP_695002	Q8N239	KLH34_HUMAN	kelch-like 34	235	BACK.									ovary(1)	1						GAGTACACGCGCCGCAGTACG	0.667													36	32					6.19805e-25	1.53684e-24	1	0
YY2	404281	broad.mit.edu	37	X	21875297	21875297	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:21875297C>T	uc011mjp.1	+	1	695	c.695C>T	c.(694-696)CCT>CTT	p.P232L	MBTPS2_uc004dae.2_Intron|MBTPS2_uc010nfr.2_Intron|YY2_uc010nfq.2_Missense_Mutation_p.P450L|MBTPS2_uc004dab.2_Intron	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	232					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CTCTCAGATCCTAAACAGCTG	0.483													179	219					0	0	0	0
ACOT9	23597	broad.mit.edu	37	X	23749058	23749058	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:23749058G>A	uc004dap.2	-	4	356	c.210C>T	c.(208-210)TTC>TTT	p.F70F	ACOT9_uc004dao.2_Silent_p.F79F|ACOT9_uc004daq.2_Silent_p.F28F|ACOT9_uc004dar.2_Silent_p.F10F|ACOT9_uc011mjt.1_RNA|ACOT9_uc004das.2_Silent_p.F10F|ACOT9_uc004dat.1_Silent_p.F70F	NM_001033583	NP_001028755	Q9Y305	ACOT9_HUMAN	acyl-Coenzyme A thioesterase 2, mitochondrial	70					acyl-CoA metabolic process	mitochondrion	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(2)|pancreas(1)	3						ATTTAGCCAAGAAACTATGAA	0.418													7	138					0	0	0	0
POLA1	5422	broad.mit.edu	37	X	24742495	24742495	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:24742495C>T	uc004dbl.2	+	12	1249	c.1226C>T	c.(1225-1227)TCA>TTA	p.S409L	POLA1_uc004dbm.2_Missense_Mutation_p.S415L|POLA1_uc004dbn.2_Missense_Mutation_p.S273L	NM_016937	NP_058633	P09884	DPOLA_HUMAN	DNA-directed DNA polymerase alpha 1	409					cell proliferation|DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	chromatin binding|DNA-directed DNA polymerase activity|metal ion binding|nucleoside binding			ovary(2)|skin(1)	3					Clofarabine(DB00631)|Fludarabine(DB01073)	ACTCCAATTTCAATGAAGGAT	0.328													7	69					0	0	0	0
Unknown	0	broad.mit.edu	37	X	26179269	26179269	+	IGR	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:26179269T>A								MAGEB18 (20417 upstream) : MAGEB6 (31288 downstream)																							CCAAGAGAGCTGCGTTCTTTA	0.463													16	76					0	0	0	0
Unknown	0	broad.mit.edu	37	X	26179491	26179491	+	IGR	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:26179491C>G								MAGEB18 (20639 upstream) : MAGEB6 (31066 downstream)																							CGGATTCCAGCGGCGAGTCCT	0.522													21	82					0	0	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212208	26212208	+	Missense_Mutation	SNP	C	A	A	rs138482118	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:26212208C>A	uc004dbr.2	+	2	394	c.245C>A	c.(244-246)TCC>TAC	p.S82Y	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	82	Ser-rich.									ovary(3)	3						TATTCAAAATCCGATGTGGCT	0.542													22	70					1.96292e-10	4.39595e-10	1	0
DCAF8L2	347442	broad.mit.edu	37	X	27766844	27766844	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:27766844C>G	uc011mjy.1	+	1	1919	c.1832C>G	c.(1831-1833)TCT>TGT	p.S611C		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						TCGGATGAGTCTTCCAGCACT	0.527													6	16					0	0	0	0
MAGEB3	4114	broad.mit.edu	37	X	30254265	30254265	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:30254265T>C	uc004dca.1	+	5	961	c.224T>C	c.(223-225)GTA>GCA	p.V75A		NM_002365	NP_002356	O15480	MAGB3_HUMAN	melanoma antigen family B, 3	75											0						ACTACATCTGTAGATGTTTCT	0.458													5	17					0	0	0	0
MAGEB1	4112	broad.mit.edu	37	X	30269583	30269583	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:30269583C>A	uc004dcc.2	+	4	1293	c.973C>A	c.(973-975)CGT>AGT	p.R325S	MAGEB1_uc004dcd.2_Missense_Mutation_p.R325S|MAGEB1_uc004dce.2_Missense_Mutation_p.R325S	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	325											0						TAGAGCCAGGCGTCGCACTAC	0.527													19	76					4.96729e-08	1.05592e-07	1	0
GK	2710	broad.mit.edu	37	X	30738843	30738843	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:30738843C>A	uc004dch.3	+	17	1521	c.1342C>A	c.(1342-1344)CTG>ATG	p.L448M	GK_uc010ngj.2_Missense_Mutation_p.L442M|GK_uc004dci.3_Missense_Mutation_p.L442M|GK_uc011mjz.1_Missense_Mutation_p.L243M|GK_uc011mka.1_Missense_Mutation_p.L285M|GK_uc010ngk.2_Missense_Mutation_p.L237M	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	448					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						AGCAGACATTCTGTATATACC	0.398													32	86					3.03874e-20	7.4093e-20	1	0
TAB3	257397	broad.mit.edu	37	X	30872655	30872655	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:30872655G>T	uc004dcj.2	-	6	1790	c.1127C>A	c.(1126-1128)CCT>CAT	p.P376H	TAB3_uc004dck.2_Missense_Mutation_p.P376H|TAB3_uc010ngl.2_Missense_Mutation_p.P376H	NM_152787	NP_690000	Q8N5C8	TAB3_HUMAN	mitogen-activated protein kinase kinase kinase 7	376	Pro-rich.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein binding|zinc ion binding			ovary(1)	1						TGCTGTCCCAGGTCTTTGAGA	0.438													30	116					5.60225e-13	1.30447e-12	1	0
DMD	1756	broad.mit.edu	37	X	31792249	31792249	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:31792249G>T	uc004dda.1	-	51	7614	c.7370C>A	c.(7369-7371)TCC>TAC	p.S2457Y	DMD_uc004dcr.1_5'UTR|DMD_uc004dcs.1_5'UTR|DMD_uc004dct.1_5'UTR|DMD_uc004dcu.1_5'UTR|DMD_uc004dcv.1_5'UTR|DMD_uc004dcw.2_Missense_Mutation_p.S1113Y|DMD_uc004dcx.2_Missense_Mutation_p.S1116Y|DMD_uc004dcz.2_Missense_Mutation_p.S2334Y|DMD_uc004dcy.1_Missense_Mutation_p.S2453Y|DMD_uc004ddb.1_Missense_Mutation_p.S2449Y|DMD_uc004ddd.1_5'UTR	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2457					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TTCTAGTTTGGAGATGGCAGT	0.433													17	55					2.4624e-09	5.41112e-09	1	0
FAM47A	158724	broad.mit.edu	37	X	34149176	34149176	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:34149176C>G	uc004ddg.2	-	1	1253	c.1220G>C	c.(1219-1221)GGA>GCA	p.G407A		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	407										ovary(4)|central_nervous_system(1)	5						ATGGCACACTCCAGTCTTGGG	0.567													16	75					0	0	0	0
FAM47B	170062	broad.mit.edu	37	X	34962278	34962278	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:34962278C>T	uc004ddi.1	+	1	1348	c.1330C>T	c.(1330-1332)CCA>TCA	p.P444S		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	444										ovary(3)|breast(1)	4						GGAAGATACACCAAGCACAAT	0.512													17	93					0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37028425	37028425	+	Missense_Mutation	SNP	A	G	G	rs145580328	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:37028425A>G	uc004ddl.1	+	1	1956	c.1942A>G	c.(1942-1944)AAT>GAT	p.N648D		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	648										ovary(3)	3						GGAGCCTCCCAATACTGGAGT	0.642													5	125					0	0	0	0
CXorf27	25763	broad.mit.edu	37	X	37850395	37850395	+	Missense_Mutation	SNP	T	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:37850395T>A	uc004ddt.3	+	1	326	c.303T>A	c.(301-303)GAT>GAA	p.D101E		NM_012274	NP_036406	O75409	HYPM_HUMAN	Huntingtin interacting protein M	101							DNA binding			central_nervous_system(1)	1						CTGAGAGTGATGTGACTCGCT	0.527													11	31					0	0	0	0
BCOR	54880	broad.mit.edu	37	X	39932751	39932751	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:39932751G>T	uc004den.3	-	4	2140	c.1848C>A	c.(1846-1848)GGC>GGA	p.G616G	BCOR_uc004dep.3_Silent_p.G616G|BCOR_uc004deo.3_Silent_p.G616G|BCOR_uc004dem.3_Silent_p.G616G|BCOR_uc004deq.3_Silent_p.G616G	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	616					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						TGGCTTTGGCGCCCTTGCTGC	0.567													22	67					4.26978e-12	9.78653e-12	1	0
Unknown	0	broad.mit.edu	37	X	47658188	47658189	+	IGR	DNP	GG	TT	TT			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:47658188_47658189GG>TT								LOC100133957 (138412 upstream) : ZNF81 (38112 downstream)																							GGAGCATTATGGTGCAACATCC	0.248													8	26					0	0	0	0
Unknown	0	broad.mit.edu	37	X	47663613	47663613	+	IGR	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:47663613G>A								LOC100133957 (143837 upstream) : ZNF81 (32688 downstream)																							TCCTCCTCTAGGCTCTCCACC	0.582													11	35					0	0	0	0
SSX5	6758	broad.mit.edu	37	X	48049698	48049698	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:48049698G>A	uc004dja.1	-	6	390	c.337C>T	c.(337-339)CCC>TCC	p.P113S	SSX5_uc004diz.1_Missense_Mutation_p.P154S	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	113					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						GGCTTCTCGGGCGTGATCTTT	0.348													54	243					0	0	0	0
WAS	7454	broad.mit.edu	37	X	48542680	48542680	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:48542680C>A	uc004dkm.3	+	2	198	c.141C>A	c.(139-141)GCC>GCA	p.A47A		NM_000377	NP_000368	P42768	WASP_HUMAN	Wiskott-Aldrich syndrome protein	47	WH1.				blood coagulation|defense response|epidermis development|immune response|T cell receptor signaling pathway	actin cytoskeleton|cytosol	identical protein binding|small GTPase regulator activity			ovary(1)	1		all_lung(315;1.27e-10)				AGACGCTGGCCACTGCAGTTG	0.602			Mis|N|F|S			lymphoma			Wiskott-Aldrich_syndrome				18	48					2.35188e-11	5.33498e-11	1	0
HDAC6	10013	broad.mit.edu	37	X	48672940	48672940	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:48672940C>A	uc011mmi.1	+	11	995	c.900C>A	c.(898-900)GGC>GGA	p.G300G	HDAC6_uc004dks.1_Silent_p.G300G|HDAC6_uc010nig.1_Silent_p.G148G|HDAC6_uc004dkt.1_Silent_p.G300G|HDAC6_uc011mmj.1_Silent_p.G245G|HDAC6_uc011mmk.1_Silent_p.G281G|HDAC6_uc004dkv.1_5'UTR|HDAC6_uc004dkw.1_5'UTR	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	300	Histone deacetylase 1.				aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	TCGGCCAAGGCCAAGGATATA	0.602													11	56					1.33987e-11	3.05116e-11	1	0
KCND1	3750	broad.mit.edu	37	X	48826247	48826247	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:48826247G>T	uc004dlx.1	-	1	2005	c.432C>A	c.(430-432)GCC>GCA	p.A144A	KCND1_uc004dlw.1_5'Flank	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	144	Cytoplasmic (Potential).					voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						CCAGGCGCTCGGCATTCTCCT	0.657													9	19					1.12685e-05	2.25627e-05	1	0
CCDC120	90060	broad.mit.edu	37	X	48921431	48921431	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:48921431C>A	uc010nik.2	+	5	730	c.223C>A	c.(223-225)CCT>ACT	p.P75T	CCDC120_uc011mmq.1_Missense_Mutation_p.P63T|CCDC120_uc004dmf.2_Missense_Mutation_p.P75T|CCDC120_uc010nil.2_Missense_Mutation_p.P75T|CCDC120_uc011mmr.1_Missense_Mutation_p.P75T|CCDC120_uc011mms.1_Missense_Mutation_p.P63T	NM_033626	NP_296375	Q96HB5	CC120_HUMAN	coiled-coil domain containing 120 isoform 3	75							protein binding			pancreas(1)	1						CCCACTAGAGCCTGGTGAACG	0.657													6	24					0.000157383	0.000305386	1	0
PPP1R3F	89801	broad.mit.edu	37	X	49142667	49142667	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:49142667G>C	uc004dnh.1	+	4	1531	c.1515G>C	c.(1513-1515)GCG>GCC	p.A505A	PPP1R3F_uc011mnd.1_Silent_p.A176A|PPP1R3F_uc004dni.2_Silent_p.A159A|PPP1R3F_uc004dnj.1_Silent_p.A159A	NM_033215	NP_149992	Q6ZSY5	PPR3F_HUMAN	protein phosphatase 1, regulatory (inhibitor)	505	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	Ovarian(276;0.236)					CTGTGGCTGCGGGTGGGGCAG	0.657													7	18					0	0	0	0
CCNB3	85417	broad.mit.edu	37	X	50089707	50089707	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:50089707G>A	uc004dox.3	+	10	4009	c.3711G>A	c.(3709-3711)CAG>CAA	p.Q1237Q	CCNB3_uc004doy.2_Silent_p.Q1237Q|CCNB3_uc004doz.2_Silent_p.Q133Q|CCNB3_uc010njq.2_Silent_p.Q129Q|CCNB3_uc004dpa.2_Silent_p.Q76Q	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1237					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					ATAATTATCAGCGATCTGAGG	0.473													23	75					0	0	0	0
SHROOM4	57477	broad.mit.edu	37	X	50376525	50376525	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:50376525G>T	uc004dpe.2	-	4	2574	c.2548C>A	c.(2548-2550)CTT>ATT	p.L850I	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Missense_Mutation_p.L734I	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	850					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					TCTGACTGAAGGGGTGACATG	0.443													23	111					1.1804e-14	2.80424e-14	1	0
GSPT2	23708	broad.mit.edu	37	X	51488376	51488376	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:51488376G>T	uc004dpl.2	+	1	1880	c.1654G>T	c.(1654-1656)GTT>TTT	p.V552F		NM_018094	NP_060564	Q8IYD1	ERF3B_HUMAN	peptide chain release factor 3	552					cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|translational termination	cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1	Ovarian(276;0.236)					TATTGAGGAAGTTGAGATAAC	0.418													31	91					1.88708e-17	4.56326e-17	1	0
XAGE5	170627	broad.mit.edu	37	X	52844169	52844169	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:52844169G>T	uc004drd.1	+	4	297	c.232G>T	c.(232-234)GAA>TAA	p.E78*		NM_130775	NP_570131	Q8WWM1	GAGD5_HUMAN	X antigen family, member 5	78										ovary(1)	1						GACTGGGGATGAATGCGGAGA	0.428													6	52					0.00198382	0.003734	1	0
HUWE1	10075	broad.mit.edu	37	X	53571657	53571657	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:53571657G>C	uc004dsp.2	-	72	11517	c.11115C>G	c.(11113-11115)CTC>CTG	p.L3705L	HUWE1_uc004dsn.2_Silent_p.L2513L|HUWE1_uc004dsq.1_Silent_p.L20L	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3705					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						AAGGCAGCTGGAGCTCCCGGC	0.522													5	93					0	0	0	0
FGD1	2245	broad.mit.edu	37	X	54472808	54472808	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:54472808C>G	uc004dtg.2	-	18	3354	c.2620G>C	c.(2620-2622)GAG>CAG	p.E874Q		NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	874	PH 2.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GGTCCCACCTCGAAGCCAATG	0.652													4	40					0	0	0	0
ITIH5L	347365	broad.mit.edu	37	X	54785154	54785154	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:54785154G>T	uc004dtj.2	-	8	1383	c.1353C>A	c.(1351-1353)CGC>CGA	p.R451R		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	451	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						CCTCATATATGCGCCGGGCTA	0.572													10	29					2.17888e-05	4.35775e-05	1	0
PAGE5	90737	broad.mit.edu	37	X	55248198	55248198	+	Splice_Site	SNP	A	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:55248198A>C	uc004duj.2	+	3	384	c.142_splice	c.e3-2	p.V48_splice	PAGE5_uc004duk.2_Splice_Site_p.V28_splice	NM_130467	NP_569734	Q96GU1	GGEE1_HUMAN	P antigen family, member 5 isoform 1												0						TTACACCCTTAGGTCCAGCAG	0.393													7	11					0	0	0	0
FAM123B	139285	broad.mit.edu	37	X	63412059	63412059	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:63412059C>A	uc004dvo.2	-	2	1381	c.1108G>T	c.(1108-1110)GAG>TAG	p.E370*		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	370	Glu-rich.				Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						GCCATCTCCTCCCCACCTCCT	0.373													16	110					4.7546e-09	1.03448e-08	1	0
DLG3	1741	broad.mit.edu	37	X	69719860	69719860	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:69719860T>C	uc004dyi.1	+	16	2434	c.2106T>C	c.(2104-2106)TAT>TAC	p.Y702Y	DLG3_uc004dyj.1_Silent_p.Y397Y|DLG3_uc011mpn.1_Silent_p.Y250Y	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	702	Guanylate kinase-like.				axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					ATAACCTCTATGGGACCAGCA	0.498													8	42					0	0	0	0
OGT	8473	broad.mit.edu	37	X	70776893	70776893	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:70776893C>G	uc004eaa.1	+	10	1475	c.1258C>G	c.(1258-1260)CGT>GGT	p.R420G	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.R410G|OGT_uc004eac.2_Missense_Mutation_p.R281G|OGT_uc004ead.2_Missense_Mutation_p.R39G	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	420	TPR 11.				cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					GTGTTATACGCGTGCCATCCA	0.408													4	46					0	0	0	0
NHSL2	340527	broad.mit.edu	37	X	71359607	71359607	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:71359607C>A	uc011mqa.1	+	6	2209	c.2209C>A	c.(2209-2211)CCT>ACT	p.P737T	NHSL2_uc004eak.1_Missense_Mutation_p.P371T|NHSL2_uc010nli.2_Missense_Mutation_p.P506T	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	737											0	Renal(35;0.156)					CCACTTACCCCCTCCAAGCAG	0.577													6	63					8.12818e-05	0.000159302	1	0
FLJ44635	392490	broad.mit.edu	37	X	71379782	71379782	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:71379782G>A	uc004eal.1	+	2	451	c.103G>A	c.(103-105)GAG>AAG	p.E35K		NM_207422	NP_997305	Q56UQ5	TPT1L_HUMAN	hypothetical protein LOC392490	35										lung(1)	1	Renal(35;0.156)					GCTGCGCCTGGAGGTGGAAGG	0.512													9	37					0	0	0	0
RLIM	51132	broad.mit.edu	37	X	73812474	73812474	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:73812474C>T	uc004ebu.2	-	5	966	c.676G>A	c.(676-678)GAA>AAA	p.E226K	RLIM_uc004ebw.2_Missense_Mutation_p.E226K	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	226					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CTACTTCTTTCAGCTCTTGCT	0.468													13	122					0	0	0	0
ATRX	546	broad.mit.edu	37	X	76854951	76854951	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:76854951G>A	uc004ecp.3	-	25	6117	c.5885C>T	c.(5884-5886)TCT>TTT	p.S1962F	ATRX_uc004ecq.3_Missense_Mutation_p.S1924F|ATRX_uc004eco.3_Missense_Mutation_p.S1747F	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1962					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	ACCTCCCCGAGATCTTGAATT	0.383			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						39	425					0	0	0	0
ATRX	546	broad.mit.edu	37	X	76938634	76938634	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:76938634T>C	uc004ecp.3	-	9	2346	c.2114A>G	c.(2113-2115)GAC>GGC	p.D705G	ATRX_uc004ecq.3_Missense_Mutation_p.D667G|ATRX_uc004eco.3_Missense_Mutation_p.D490G|ATRX_uc004ecr.2_Missense_Mutation_p.D637G|ATRX_uc010nlx.1_Missense_Mutation_p.D676G|ATRX_uc010nly.1_Missense_Mutation_p.D650G	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	705					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TATAGCACTGTCAGAAGAATT	0.343			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						33	258					0	0	0	0
ATP7A	538	broad.mit.edu	37	X	77271303	77271303	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:77271303G>T	uc004ecx.3	+	12	2711	c.2551G>T	c.(2551-2553)GTT>TTT	p.V851F		NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	851	Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						CATTAAAGTAGTTCCAGGAGG	0.393													13	159					9.31168e-06	1.8816e-05	1	0
LPAR4	2846	broad.mit.edu	37	X	78010699	78010699	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:78010699C>A	uc010nme.2	+	2	738	c.333C>A	c.(331-333)TGC>TGA	p.C111*		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	111	Extracellular (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						ACACCCTCTGCAAGATCTCTG	0.428													34	109					9.78485e-24	2.41259e-23	1	0
P2RY10	27334	broad.mit.edu	37	X	78216597	78216597	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:78216597G>T	uc004ede.2	+	4	949	c.580G>T	c.(580-582)GCG>TCG	p.A194S	P2RY10_uc004edf.2_Missense_Mutation_p.A194S	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	194	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled	p.A194T(1)		ovary(2)|lung(2)|breast(1)	5						GAATGCAGTTGCGTTGGTCGG	0.458													6	66					1.06961e-07	2.26552e-07	1	0
POU3F4	5456	broad.mit.edu	37	X	82763401	82763401	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:82763401G>A	uc004eeg.2	+	1	133	c.69G>A	c.(67-69)GCG>GCA	p.A23A		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	23					sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						CGGACTCTGCGGGCATGCAGC	0.552													5	34					0	0	0	0
SATL1	340562	broad.mit.edu	37	X	84362472	84362472	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:84362472C>T	uc011mqx.1	-	1	1503	c.1503G>A	c.(1501-1503)CTG>CTA	p.L501L	SATL1_uc004een.2_Silent_p.L501L	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	314	Gln-rich.						N-acetyltransferase activity			breast(2)	2						CTGGTTGGCTCAGCACTAATT	0.547													9	81					0	0	0	0
PCDH11X	27328	broad.mit.edu	37	X	91134149	91134149	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:91134149C>A	uc004efk.1	+	2	3755	c.2910C>A	c.(2908-2910)AAC>AAA	p.N970K	PCDH11X_uc004efl.1_Missense_Mutation_p.N970K|PCDH11X_uc004efo.1_Missense_Mutation_p.N970K|PCDH11X_uc010nmv.1_Missense_Mutation_p.N970K|PCDH11X_uc004efm.1_Missense_Mutation_p.N970K|PCDH11X_uc004efn.1_Missense_Mutation_p.N970K|PCDH11X_uc004efh.1_Missense_Mutation_p.N970K|PCDH11X_uc004efj.1_Missense_Mutation_p.N970K	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	970	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CTCTCGATAACACCTTTGTGG	0.502													50	154					4.86159e-25	1.20716e-24	1	0
BTK	695	broad.mit.edu	37	X	100608907	100608907	+	Missense_Mutation	SNP	T	A	A	rs146681416	byFrequency	TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:100608907T>A	uc004ehg.2	-	17	1894	c.1701A>T	c.(1699-1701)GAA>GAT	p.E567D	BTK_uc004ehf.2_Missense_Mutation_p.E67D|BTK_uc010nnh.2_Intron|BTK_uc010nni.2_Intron|BTK_uc004ehe.2_RNA|BTK_uc010nnj.2_RNA|BTK_uc010nnk.2_RNA|BTK_uc010nnl.2_Missense_Mutation_p.E43D|BTK_uc010nnm.2_Missense_Mutation_p.E137D|BTK_uc010nnn.2_Missense_Mutation_p.E391D|BTK_uc010nno.2_Missense_Mutation_p.E601D|BTK_uc004ehh.1_RNA	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	567	Protein kinase.		E -> K (in XLA; severe).		calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						ACATCAGGACTTCCGGTGGGG	0.443									Agammaglobulinemia_X-linked				6	93					0	0	0	0
TCEAL2	140597	broad.mit.edu	37	X	101381993	101381993	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:101381993C>T	uc004eip.2	+	3	410	c.191C>T	c.(190-192)CCA>CTA	p.P64L		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	64					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						AAAGAAAAGCCagagagtgcg	0.209													8	16					0	0	0	0
ARMCX5	64860	broad.mit.edu	37	X	101857875	101857875	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:101857875C>T	uc004ejg.2	+	6	1687	c.806C>T	c.(805-807)CCT>CTT	p.P269L	ARMCX5_uc004ejh.2_Missense_Mutation_p.P269L	NM_022838	NP_073749	Q6P1M9	ARMX5_HUMAN	armadillo repeat containing, X-linked 5	269							binding			ovary(1)	1						AAGATCCCACCTTATCATGGG	0.488													10	119					0	0	0	0
GPRASP1	9737	broad.mit.edu	37	X	101910570	101910570	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:101910570G>A	uc004ejj.3	+	5	2530	c.1729G>A	c.(1729-1731)GAG>AAG	p.E577K	GPRASP1_uc004eji.3_Missense_Mutation_p.E577K|GPRASP1_uc010nod.2_Missense_Mutation_p.E577K	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	577	Glu-rich.					cytoplasm	protein binding			ovary(1)|lung(1)	2						AGCTGAAGAAGAGACAATATT	0.507													22	157					0	0	0	0
RAB40AL	282808	broad.mit.edu	37	X	102192824	102192824	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:102192824A>G	uc004ejs.2	+	1	625	c.578A>G	c.(577-579)CAA>CGA	p.Q193R		NM_001031834	NP_001027004	P0C0E4	RB40L_HUMAN	RAB40A, member RAS oncogene family-like	193	SOCS box.				protein transport|small GTPase mediated signal transduction	mitochondrion|plasma membrane	GTP binding			ovary(2)	2						CTGAGCTTGCAAGACCTCTGC	0.567													21	46					0	0	0	0
NGFRAP1	27018	broad.mit.edu	37	X	102632528	102632528	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:102632528C>A	uc004eki.2	+	3	491	c.109C>A	c.(109-111)CGG>AGG	p.R37R	NGFRAP1_uc004ekh.2_Silent_p.R27R|NGFRAP1_uc004ekj.1_Silent_p.R37R	NM_206915	NP_996798	Q00994	BEX3_HUMAN	nerve growth factor receptor (TNFRSF16)	37					apoptosis|multicellular organismal development|nerve growth factor receptor signaling pathway	cytosol|nucleus	caspase regulator activity|metal ion binding				0						AGGAAATCGACGGGGACAGGC	0.522													14	193					1.05317e-09	2.33183e-09	1	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011308	105011308	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:105011308C>G	uc004elz.1	+	11	2471	c.1715C>G	c.(1714-1716)TCC>TGC	p.S572C		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	572	Cytoplasmic (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GTTCTGGACTCCGCAGAACAA	0.438													12	101					0	0	0	0
MID2	11043	broad.mit.edu	37	X	107148729	107148729	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:107148729G>C	uc004enl.2	+	5	1519	c.946G>C	c.(946-948)GCA>CCA	p.A316P	MID2_uc004enk.2_Missense_Mutation_p.A316P	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	316						centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						GAGAAAGTTGGCACAGCAGGT	0.373													7	111					0	0	0	0
IRS4	8471	broad.mit.edu	37	X	107977922	107977922	+	Silent	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:107977922G>T	uc004eoc.2	-	1	1686	c.1653C>A	c.(1651-1653)GGC>GGA	p.G551G		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	551						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CACCTGCGGTGCCCTGGCCAT	0.642													15	164					0.00244969	0.00460595	1	0
IRS4	8471	broad.mit.edu	37	X	107978169	107978169	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:107978169C>A	uc004eoc.2	-	1	1439	c.1406G>T	c.(1405-1407)GGG>GTG	p.G469V		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	469						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						GCCTTCCTCCCCAAAGTTGCC	0.582													14	119					1.5842e-08	3.40884e-08	1	0
ACSL4	2182	broad.mit.edu	37	X	108921236	108921236	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:108921236G>A	uc004eoi.2	-	9	1539	c.1034C>T	c.(1033-1035)CCG>CTG	p.P345L	ACSL4_uc004eoj.2_Missense_Mutation_p.P304L|ACSL4_uc004eok.2_Missense_Mutation_p.P304L|ACSL4_uc010npp.1_Missense_Mutation_p.P345L	NM_022977	NP_075266	O60488	ACSL4_HUMAN	acyl-CoA synthetase long-chain family member 4	345	Cytoplasmic (Potential).				fatty acid metabolic process|learning or memory|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(1)|lung(1)|ovary(1)	3					Icosapent(DB00159)|Troglitazone(DB00197)	GAGTGTAAGCGGAGAAGAATA	0.428													6	67					0	0	0	0
AMOT	154796	broad.mit.edu	37	X	112025794	112025794	+	Silent	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:112025794A>G	uc004epr.2	-	8	2214	c.2214T>C	c.(2212-2214)AAT>AAC	p.N738N	AMOT_uc004eps.2_Silent_p.N329N|AMOT_uc011mtc.1_5'Flank|hsa-mir-4329|MI0015901_5'Flank	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	738	Potential.				actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						GGCAACGCTTATTGGCCATCA	0.463													5	64					0	0	0	0
AKAP14	158798	broad.mit.edu	37	X	119054534	119054534	+	Silent	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:119054534C>T	uc004ese.2	+	7	696	c.558C>T	c.(556-558)TTC>TTT	p.F186F	AKAP14_uc004esf.2_Silent_p.F126F	NM_178813	NP_848928	Q86UN6	AKA28_HUMAN	A kinase (PRKA) anchor protein 14 isoform a	186						cytoplasm					0						AATATAGTTTCATGGAGTCAT	0.353													9	53					0	0	0	0
GLUD2	2747	broad.mit.edu	37	X	120183197	120183197	+	Silent	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:120183197T>C	uc004eto.2	+	1	1736	c.1659T>C	c.(1657-1659)GCT>GCC	p.A553A		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	553					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	ACAGTGAAGCTGGTGTGACCT	0.433													20	108					0	0	0	0
SH2D1A	4068	broad.mit.edu	37	X	123504074	123504074	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:123504074A>T	uc004euf.3	+	3	595	c.250A>T	c.(250-252)ATT>TTT	p.I84F	SH2D1A_uc004euh.3_Missense_Mutation_p.I84F|SH2D1A_uc004eug.3_Intron|SH2D1A_uc010nqw.2_Intron|SH2D1A_uc004eui.3_RNA|SH2D1A_uc010nqx.2_Intron	NM_002351	NP_002342	O60880	SH21A_HUMAN	SH2 domain protein 1A isoform 1	84	SH2.		I -> T (in XLP1; reduced protein stability).		cell-cell signaling|cellular defense response	cytoplasm	SH3/SH2 adaptor activity				0						AAAAAATCTCATTTCAGCATT	0.368									X-linked_Lymphoproliferative_syndrome				15	107					0	0	0	0
ODZ1	10178	broad.mit.edu	37	X	123805604	123805604	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:123805604C>A	uc004euj.2	-	6	1161	c.1097G>T	c.(1096-1098)AGG>ATG	p.R366M	ODZ1_uc011muj.1_Missense_Mutation_p.R365M|ODZ1_uc010nqy.2_Missense_Mutation_p.R366M	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	366	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTCGGTCCCCCTGTTCCCTTT	0.438													27	169					1.5548e-18	3.77533e-18	1	0
DCAF12L2	340578	broad.mit.edu	37	X	125299012	125299012	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:125299012A>T	uc004euk.1	-	1	923	c.896T>A	c.(895-897)CTG>CAG	p.L299Q		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	299	WD 3.									lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						CCTGATGGACAGGAGCCTGGA	0.612													22	107					0	0	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685234	125685234	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:125685234C>A	uc004eul.2	-	1	1609	c.1358G>T	c.(1357-1359)GGC>GTC	p.G453V		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	453										skin(3)|ovary(1)	4						CCCATGGAGGCCTGCAGGGAG	0.557													5	104					5.9392e-07	1.23857e-06	1	0
ENOX2	10495	broad.mit.edu	37	X	129759343	129759343	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:129759343G>T	uc004evw.2	-	16	2196	c.1778C>A	c.(1777-1779)GCC>GAC	p.A593D	ENOX2_uc004evx.2_Missense_Mutation_p.A564D|ENOX2_uc004evy.2_Missense_Mutation_p.A564D|ENOX2_uc004evv.2_Missense_Mutation_p.A418D	NM_182314	NP_872114	Q16206	ENOX2_HUMAN	ecto-NOX disulfide-thiol exchanger 2 isoform b	593					cell growth|electron transport chain|regulation of growth|transport|ultradian rhythm	cytosol|external side of plasma membrane|extracellular space	nucleic acid binding|nucleotide binding|protein disulfide oxidoreductase activity			ovary(1)	1						TTCCAGGCTGGCTCCAACTCC	0.478													6	76					2.7689e-08	5.93624e-08	1	0
IGSF1	3547	broad.mit.edu	37	X	130416528	130416528	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:130416528A>T	uc004ewd.2	-	7	1374	c.1136T>A	c.(1135-1137)CTC>CAC	p.L379H	IGSF1_uc004ewe.3_Missense_Mutation_p.L368H|IGSF1_uc004ewf.2_Missense_Mutation_p.L359H	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	379	Ig-like C2-type 4.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TACATTGTTGAGGAAGAATGA	0.453													12	48					0	0	0	0
IGSF1	3547	broad.mit.edu	37	X	130417184	130417184	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:130417184C>A	uc004ewd.2	-	6	960	c.722G>T	c.(721-723)GGA>GTA	p.G241V	IGSF1_uc004ewe.3_Missense_Mutation_p.G230V|IGSF1_uc004ewf.2_Missense_Mutation_p.G221V	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	241	Ig-like C2-type 3.|Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CAGGCTTTCTCCAGGTGCCAT	0.478													17	52					1.99824e-07	4.20706e-07	1	0
FRMD7	90167	broad.mit.edu	37	X	131228105	131228105	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:131228105T>C	uc004ewn.2	-	5	525	c.347A>G	c.(346-348)AAC>AGC	p.N116S	FRMD7_uc011muy.1_Missense_Mutation_p.N101S	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	116	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CGCTGTACAGTTGTCACTGCA	0.423													13	126					0	0	0	0
FAM122C	159091	broad.mit.edu	37	X	133979247	133979247	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:133979247G>A	uc004exz.1	+	4	664	c.259G>A	c.(259-261)GAT>AAT	p.D87N	FAM122C_uc011mvq.1_RNA|FAM122C_uc004exy.1_Missense_Mutation_p.D87N	NM_138819	NP_620174	Q6P4D5	F222C_HUMAN	hypothetical protein LOC159091	87											0	Acute lymphoblastic leukemia(192;0.000127)					AGAAGCCATGGATTTAATAAA	0.284													17	145					0	0	0	0
DDX26B	203522	broad.mit.edu	37	X	134681181	134681181	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:134681181A>G	uc004eyw.3	+	6	1096	c.733A>G	c.(733-735)ATT>GTT	p.I245V		NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	245											0	Acute lymphoblastic leukemia(192;6.56e-05)					TCCACTTCCTATTGGAGAAGG	0.308													8	133					0	0	0	0
RBMX	27316	broad.mit.edu	37	X	135961278	135961278	+	Silent	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:135961278G>A	uc004fae.1	-	3	324	c.114C>T	c.(112-114)CTC>CTT	p.L38L	RBMX_uc011mwf.1_Silent_p.L38L|RBMX_uc004fad.1_Silent_p.L38L|RBMX_uc011mwg.1_5'UTR|RBMX_uc004faf.1_5'UTR|RBMX_uc010nsf.1_5'UTR|RBMX_uc004fag.1_Intron	NM_002139	NP_002130	P38159	HNRPG_HUMAN	RNA binding motif protein, X-linked isoform 1	38	RRM.					catalytic step 2 spliceosome|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CTTTCATCAAGAGTACTAAAA	0.378													9	108					0	0	0	0
SOX3	6658	broad.mit.edu	37	X	139586788	139586788	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:139586788G>T	uc004fbd.1	-	1	438	c.438C>A	c.(436-438)TTC>TTA	p.F146L		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	146	HMG box.				face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					ACCATACCATGAAGGCGTTCA	0.662													18	34					0.00498961	0.00927244	1	0
MAGEC3	139081	broad.mit.edu	37	X	140926157	140926157	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:140926157G>T	uc011mwp.1	+	1	56	c.56G>T	c.(55-57)GGC>GTC	p.G19V		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	19										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGCAGTCTAGGCCAGTGGGTG	0.502													18	63					4.96729e-08	1.05592e-07	1	0
MAGEC1	9947	broad.mit.edu	37	X	140994191	140994191	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:140994191C>A	uc004fbt.2	+	4	1287	c.1001C>A	c.(1000-1002)CCC>CAC	p.P334H	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	334							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAGGGTTTTCCCCAGTCTCTT	0.463										HNSCC(15;0.026)			40	187					1.07121e-22	2.63382e-22	1	0
MAGEC2	51438	broad.mit.edu	37	X	141291018	141291018	+	Silent	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:141291018C>A	uc004fbu.1	-	3	1104	c.756G>T	c.(754-756)GTG>GTT	p.V252V		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	252	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTGCATTCAGCACTTCCCAGA	0.517										HNSCC(46;0.14)			11	152					5.50884e-06	1.11573e-05	1	0
MIR890	100126303	broad.mit.edu	37	X	145075797	145075797	+	RNA	SNP	A	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:145075797A>T	hsa-mir-890|MI0005533	-			c.73A>T																				0						ACTTGGTAAGACTTACTCTAC	0.478													12	91					0	0	0	0
MIR513C	100302114	broad.mit.edu	37	X	146271282	146271282	+	RNA	SNP	C	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:146271282C>T	hsa-mir-513c|MI0006649	-			c.24C>T																				0						taaacgacacctccttgagaa	0.159													4	17					0	0	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935815	151935815	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:151935815G>T	uc004fgp.2	-	3	561	c.352C>A	c.(352-354)CAT>AAT	p.H118N		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	118	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGCAGAAAATGAACCAACTCG	0.537													8	149					5.4927e-09	1.18918e-08	1	0
L1CAM	3897	broad.mit.edu	37	X	153132810	153132810	+	Splice_Site	SNP	C	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:153132810C>A	uc004fjb.2	-	16	2245	c.2137_splice	c.e16+1	p.A713_splice	L1CAM_uc004fjc.2_Splice_Site_p.A713_splice|L1CAM_uc010nuo.2_Splice_Site_p.A708_splice	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor						axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCCTGACTCACCTGCCTCAGG	0.597													9	110					1.12685e-05	2.25627e-05	1	0
L1CAM	3897	broad.mit.edu	37	X	153132824	153132824	+	Silent	SNP	G	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:153132824G>C	uc004fjb.2	-	16	2232	c.2124C>G	c.(2122-2124)GTC>GTG	p.V708V	L1CAM_uc004fjc.2_Silent_p.V708V|L1CAM_uc010nuo.2_Silent_p.V703V	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	708	Extracellular (Potential).				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCTCAGGTGTGACCACAGTCT	0.607													7	120					0	0	0	0
TKTL1	8277	broad.mit.edu	37	X	153539314	153539314	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:153539314C>G	uc004fkg.2	+	4	664	c.478C>G	c.(478-480)CAC>GAC	p.H160D	TKTL1_uc011mzl.1_Missense_Mutation_p.H154D|TKTL1_uc011mzm.1_Intron|TKTL1_uc004fkh.2_Missense_Mutation_p.H104D	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	160					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCGCCTGGGACACAGTGGTGC	0.512													7	75					0	0	0	0
DKC1	1736	broad.mit.edu	37	X	153997472	153997472	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:153997472G>A	uc004fmm.2	+	9	1012	c.802G>A	c.(802-804)GAT>AAT	p.D268N	DKC1_uc010nvf.2_Missense_Mutation_p.D268N	NM_001363	NP_001354	O60832	DKC1_HUMAN	dyskerin isoform 1	268					cell proliferation|pseudouridine synthesis|rRNA processing|telomere maintenance via telomerase	Cajal body|nucleolus|telomerase holoenzyme complex	protein binding|pseudouridine synthase activity|RNA binding|telomerase activity				0	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGATGTGCTTGATGCTCAGTG	0.433									Congenital_Dyskeratosis				10	140					0	0	0	0
PLEKHN1	84069	broad.mit.edu	37	1	901962	901964	+	In_Frame_Del	DEL	CTT	-	-	rs146294016		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:901962_901964delCTT	uc001ace.2	+	1	86_88	c.51_53delCTT	c.(49-54)TCCTTC>TCC	p.F18del	PLEKHN1_uc001acd.2_In_Frame_Del_p.F18del|PLEKHN1_uc001acf.2_In_Frame_Del_p.F18del	NM_032129	NP_115505	Q494U1	PKHN1_HUMAN	pleckstrin homology domain containing, family N	18											0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.00095)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		TCCGGGCCTCCTTCTCCAGAAAG	0.690													---	---	---							
ARID1A	8289	broad.mit.edu	37	1	27092740	27092740	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:27092740delG	uc001bmv.1	+	9	3134	c.2761delG	c.(2761-2763)GGGfs	p.G921fs	ARID1A_uc001bmt.1_Frame_Shift_Del_p.G921fs|ARID1A_uc001bmu.1_Frame_Shift_Del_p.G921fs|ARID1A_uc001bmw.1_Frame_Shift_Del_p.G538fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	921					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TATGAATCAAGGGGGCATGAT	0.483			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								---	---	---							
SLC35D1	23169	broad.mit.edu	37	1	67507918	67507918	+	Splice_Site	DEL	C	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:67507918delC	uc001ddk.2	-	8	1113	c.729_splice	c.e8+1	p.K243_splice	SLC35D1_uc010oph.1_Splice_Site_p.K164_splice	NM_015139	NP_055954	Q9NTN3	S35D1_HUMAN	solute carrier family 35 (UDP-glucuronic						chondroitin sulfate biosynthetic process|UDP-glucuronate biosynthetic process|xenobiotic metabolic process	integral to endoplasmic reticulum membrane	UDP-glucuronic acid transmembrane transporter activity|UDP-N-acetylgalactosamine transmembrane transporter activity				0					Lorazepam(DB00186)	GAAAGTCCTACCTTTTGTGCA	0.383													---	---	---							
KCNN3	3782	broad.mit.edu	37	1	154842200	154842202	+	In_Frame_Del	DEL	GCT	-	-	rs56352724		TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:154842200_154842202delGCT	uc001ffp.2	-	1	553_555	c.239_241delAGC	c.(238-243)CAGCCA>CCA	p.Q80del	KCNN3_uc009wox.1_In_Frame_Del_p.Q80del	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	80	Poly-Gln.					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GGATGCGGTGgctgctgctgctg	0.340													---	---	---							
Unknown	0	broad.mit.edu	37	1	167131591	167131594	+	IGR	DEL	TTTG	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:167131591_167131594delTTTG								DUSP27 (33189 upstream) : POU2F1 (58549 downstream)																							gaggtttattttTGTTTGTTTGTT	0.186													---	---	---							
Unknown	0	broad.mit.edu	37	1	225653755	225653762	+	IGR	DEL	GTTCAGGG	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:225653755_225653762delGTTCAGGG								LBR (37236 upstream) : ENAH (20772 downstream)																							GGGGGACACTGTTCAGGGAACAGAGGAG	0.630													---	---	---							
Unknown	0	broad.mit.edu	37	1	248844549	248844550	+	IGR	INS	-	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr1:248844549_248844550insT								OR2T27 (30364 upstream) : OR14I1 (120 downstream)																							CATTCAACAGGTTTTTTTTTTC	0.267													---	---	---							
OPN4	94233	broad.mit.edu	37	10	88416025	88416025	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr10:88416025delG	uc001kdq.2	+	2	485	c.258delG	c.(256-258)CTGfs	p.L86fs	OPN4_uc001kdp.2_Frame_Shift_Del_p.L86fs|OPN4_uc010qmk.1_Frame_Shift_Del_p.L86fs	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	86	Helical; Name=1; (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						CGGGGATGCTGGGCAACCTGA	0.617													---	---	---							
TBC1D4	9882	broad.mit.edu	37	13	75930347	75930348	+	Frame_Shift_Ins	INS	-	C	C			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr13:75930347_75930348insC	uc001vjl.1	-	4	1557_1558	c.1210_1211insG	c.(1210-1212)GAGfs	p.E404fs	TBC1D4_uc010aer.2_Frame_Shift_Ins_p.E404fs|TBC1D4_uc010aes.2_Frame_Shift_Ins_p.E404fs	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	404	PID 2.					cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		CTCTGGAGACTCCCGGCAGATA	0.431													---	---	---							
Unknown	0	broad.mit.edu	37	16	10935020	10935021	+	IGR	DEL	AT	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr16:10935020_10935021delAT								FAM18A (22399 upstream) : CIITA (36034 downstream)																							AGAATATCACATGTGATGAGTT	0.406													---	---	---							
ANKRD12	23253	broad.mit.edu	37	18	9258619	9258619	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr18:9258619delG	uc002knv.2	+	9	5611	c.5354delG	c.(5353-5355)CGGfs	p.R1785fs	ANKRD12_uc002knw.2_Frame_Shift_Del_p.R1762fs|ANKRD12_uc002knx.2_Frame_Shift_Del_p.R1762fs|ANKRD12_uc010dkx.1_Frame_Shift_Del_p.R1492fs	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1785						nucleus				ovary(2)|central_nervous_system(1)	3						CACCATCCACGGAAAAGGAAA	0.423													---	---	---							
LPHN1	22859	broad.mit.edu	37	19	14261849	14261850	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:14261849_14261850insG	uc010xnn.1	-	24	4556_4557	c.4260_4261insC	c.(4258-4263)CCCGAAfs	p.P1420fs	LPHN1_uc010xno.1_Frame_Shift_Ins_p.P1415fs|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	1420_1421	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						TAGTAGATTTCGGGGGGGCCGG	0.733													---	---	---							
LILRB3	11025	broad.mit.edu	37	19	54726424	54726424	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:54726424delG	uc002qef.1	-	3	192	c.81delC	c.(79-81)CCCfs	p.P27fs	LILRB3_uc002qee.1_Frame_Shift_Del_p.P27fs|LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Intron|LILRA6_uc002qek.1_Intron|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Intron|LILRA6_uc002qem.1_Intron|LILRB3_uc002qen.1_Intron|LILRB3_uc002qeo.1_Intron|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Intron|LILRB3_uc002qer.1_Intron|LILRB3_uc002qes.1_Intron|LILRA6_uc010yep.1_Intron|LILRA6_uc010yeq.1_Intron	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	27	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGGTGGGTTTGGGGAAGGGCC	0.632													---	---	---							
DUXA	503835	broad.mit.edu	37	19	57678905	57678905	+	5'Flank	DEL	C	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr19:57678905delC	uc002qoa.1	-							NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A							nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		GGTGGTCCCGCCCACTTTTTT	0.463													---	---	---							
Unknown	0	broad.mit.edu	37	2	90249273	90249273	+	RNA	DEL	C	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:90249273delC	uc010fhm.2	+	28		c.3816delC								Parts of antibodies, mostly variable regions.																		ATCCAGTTTGCAAAGTGGGGT	0.488													---	---	---							
ST6GAL2	84620	broad.mit.edu	37	2	107450599	107450599	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:107450599delG	uc002tdq.2	-	3	1066	c.947delC	c.(946-948)TCTfs	p.S316fs	ST6GAL2_uc002tdr.2_Frame_Shift_Del_p.S316fs|ST6GAL2_uc002tds.3_Frame_Shift_Del_p.S316fs	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	316	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CGCATCATGAGAATCTAAGGG	0.363													---	---	---							
GLI2	2736	broad.mit.edu	37	2	121743959	121743959	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr2:121743959delC	uc010flp.2	+	12	2092	c.2062delC	c.(2062-2064)CCCfs	p.P688fs	GLI2_uc002tmq.1_Frame_Shift_Del_p.P360fs|GLI2_uc002tmr.1_Frame_Shift_Del_p.P343fs|GLI2_uc002tmt.3_Frame_Shift_Del_p.P360fs|GLI2_uc002tmu.3_Frame_Shift_Del_p.P343fs|GLI2_uc002tmw.1_Frame_Shift_Del_p.P671fs	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	688					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GGGGACGGGGCCCGGGAGCCT	0.711													---	---	---							
ASXL1	171023	broad.mit.edu	37	20	31023983	31023983	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:31023983delA	uc002wxs.2	+	12	3894	c.3468delA	c.(3466-3468)GGAfs	p.G1156fs	ASXL1_uc010geb.2_Frame_Shift_Del_p.G1047fs	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	1156					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						ATGGTCTTGGAAAAAACAGTG	0.507			F|N|Mis		MDS|CMML								---	---	---							
HMGB3L1	128872	broad.mit.edu	37	20	33421796	33421797	+	RNA	INS	-	T	T			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr20:33421796_33421797insT	uc002xax.2	-	1		c.469_470insA				NR_002165				Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone IMAGE:40002762).												0						CTCTCTCTCTCttttttttttt	0.213													---	---	---							
NLGN1	22871	broad.mit.edu	37	3	173999063	173999063	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr3:173999063delC	uc003fio.1	+	7	2865	c.2442delC	c.(2440-2442)CACfs	p.H814fs	NLGN1_uc003fip.1_Frame_Shift_Del_p.H814fs	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	831	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			CCCATCCCCACCCCCATTCAC	0.418													---	---	---							
Unknown	0	broad.mit.edu	37	6	127683600	127683600	+	IGR	DEL	A	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr6:127683600delA								ECHDC1 (18846 upstream) : C6orf174 (75952 downstream)																							aaaaaaaaagaaaaaaaaaaa	0.109													---	---	---							
Unknown	0	broad.mit.edu	37	7	63023116	63023116	+	IGR	DEL	C	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr7:63023116delC								LOC100287704 (210965 upstream) : ZNF727 (482705 downstream)																							GTCCAGCCATCCCCCACCCTG	0.647													---	---	---							
FLJ46321	389763	broad.mit.edu	37	9	84603894	84603894	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:84603894delC	uc004amn.2	+	1	208	c.161delC	c.(160-162)ACCfs	p.T54fs		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	54						integral to membrane					0						TCGTCACCCACCGAAAAAAAT	0.428													---	---	---							
PTCH1	5727	broad.mit.edu	37	9	98270530	98270530	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chr9:98270530delC	uc004avk.3	-	1	302	c.114delG	c.(112-114)GGGfs	p.G38fs	PTCH1_uc010mro.2_5'Flank|PTCH1_uc010mrp.2_5'Flank|PTCH1_uc010mrq.2_5'Flank|PTCH1_uc004avl.3_5'Flank|PTCH1_uc010mrr.2_Intron|PTCH1_uc004avm.3_Intron|PTCH1_uc010mrt.1_5'Flank|PTCH1_uc010mru.1_5'Flank|PTCH1_uc004avo.2_Intron|PTCH1_uc010mrv.1_Intron|PTCH1_uc010mrw.1_Intron	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	38	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				CACGGCGCAGCCCCCCCGTCC	0.736									Basal_Cell_Nevus_syndrome				---	---	---							
COL4A5	1287	broad.mit.edu	37	X	107868952	107868952	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:107868952delG	uc004enz.1	+	35	3236	c.3034delG	c.(3034-3036)GGTfs	p.G1012fs	COL4A5_uc011mso.1_Frame_Shift_Del_p.G1012fs|COL4A5_uc004eob.1_Frame_Shift_Del_p.G620fs	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1012	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						AGGTAACCCTGGTCTCCCTGG	0.413									Alport_syndrome_with_Diffuse_Leiomyomatosis				---	---	---							
Unknown	0	broad.mit.edu	37	X	126757565	126757566	+	IGR	INS	-	A	A			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:126757565_126757566insA								CXorf64 (801799 upstream) : ACTRT1 (427377 downstream)																							AGGGCTTCCAGAAAAAAAAAGT	0.441													---	---	---							
ACTRT1	139741	broad.mit.edu	37	X	127185739	127185739	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:127185739delG	uc004eum.2	-	1	644	c.447delC	c.(445-447)GCCfs	p.A149fs		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	149						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						CTGTGACACAGGCAGAGGCAT	0.527													---	---	---							
USP26	83844	broad.mit.edu	37	X	132162111	132162111	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-7388-01A-11D-2012-08	TCGA-CR-7388-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	3eddb2ad-6c75-4ae7-9d27-8ec0e7b4aa55	1092f9db-c4fe-4d73-90ec-c522795f24e3	g.chrX:132162111delT	uc010nrm.1	-	6	608	c.138delA	c.(136-138)AAAfs	p.K46fs	USP26_uc011mvf.1_Frame_Shift_Del_p.K46fs	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	46					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					AAGTGCTATATTTTCCACTTT	0.333													---	---	---							
