Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CHD5	26038	genome.wustl.edu	37	1	6185184	6185184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_015557.1	-1	provisional	p.R1457Q	0.965	25	0%	30	20%	-	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_DUF1086
CSMD2	114784	genome.wustl.edu	37	1	34033265	34033265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_052896.3	-1	validated	p.R2747C	1.000	52	0%	71	14.1%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
OR6P1	128366	genome.wustl.edu	37	1	158533225	158533225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	ENST00000334632	-1	known	p.R57H	0.101	31	0%	29	44.8%	-	-	probably_damaging(0.984)	tolerated(0.06)	deleterious(0.753)	HMMPfam_7tm_1,superfamily_SSF81321
LMX1A	4009	genome.wustl.edu	37	1	165173246	165173246	+	Silent	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_177398.3	-1	validated	p.S340	1.000	41	0%	16	25%	-	-	-	-	-	NULL
LOC100287235	100287235	genome.wustl.edu	37	2	65298920	65298920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	XM_002342207.1	-1	model	p.P55L	0.549	19	0%	19	31.6%	-	-	-	-	-	NULL
ERBB4	2066	genome.wustl.edu	37	2	212488692	212488692	+	Silent	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	ENST00000260943	-1	known	p.R709K	0.996	110	0%	122	12.3%	-	-	-	-	-	HMMPfam_Pkinase_Tyr
PASK	23178	genome.wustl.edu	37	2	242076557	242076557	+	Silent	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	ENST00000433589	-1	known	p.A148V	0.000	22	0%	24	33.3%	-	-	-	-	-	NULL
COL7A1	1294	genome.wustl.edu	37	3	48621048	48621048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_000094.3	-1	reviewed	p.G1448S	1.000	27	0%	23	26.1%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
IMPDH2	3615	genome.wustl.edu	37	3	49065918	49065918	+	Silent	SNP	C	C	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_000884.2	-1	reviewed	p.L65	0.427	40	0%	45	22.2%	-	-	-	-	-	HMMPfam_IMPDH,superfamily_SSF51412
PET112	5188	genome.wustl.edu	37	4	152622574	152622574	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_004564.2	-1	validated	p.Q368H	0.099	42	0%	44	20.5%	-	-	possibly_damaging(0.456)	tolerated(0.16)	neutral(0.209)	HMMPfam_GatB
FBXW7	55294	genome.wustl.edu	37	4	153268138	153268138	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_033632.2	-1	reviewed	p.R224*	1.000	162	0%	167	46.7%	-	-	-	-	-	superfamily_WD40 repeat-like
SPOCK3	50859	genome.wustl.edu	37	4	167656107	167656107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_016950.2	-1	validated	p.D426N	1.000	276	0%	224	11.6%	-	-	unknown(0)	-	-	NULL
SORBS2	8470	genome.wustl.edu	37	4	186536018	186536018	+	Silent	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_021069.4	-1	reviewed	p.N950	0.569	199	0%	176	27.8%	-	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
WNT8A	7478	genome.wustl.edu	37	5	137426524	137426524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_058244.2	+1	reviewed	p.R273H	1.000	35	0%	50	44%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_SM00097
PCDHA3	56145	genome.wustl.edu	37	5	140183011	140183011	+	Silent	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_018906.2	+1	reviewed	p.S743	0.989	34	0%	61	16.4%	-	-	-	-	-	NULL
PCDHB2	56133	genome.wustl.edu	37	5	140476542	140476542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_018936.2	+1	reviewed	p.S723L	0.000	45	0%	59	13.6%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
PCDHB5	26167	genome.wustl.edu	37	5	140516510	140516510	+	Silent	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_015669.2	+1	reviewed	p.R498	0.007	33	0%	54	31.5%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
OR2J2	26707	genome.wustl.edu	37	6	29141999	29141999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_030905.2	+1	validated	p.N196S	0.332	102	0%	125	17.6%	-	-	probably_damaging(0.985)	tolerated(0.13)	deleterious(0.684)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GSTA5	221357	genome.wustl.edu	37	6	52697738	52697738	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_153699.1	-1	provisional	p.W155*	0.998	115	0%	119	16.8%	-	-	-	-	-	HMMPfam_GST_C,superfamily_GST_C_like
ESR1	2099	genome.wustl.edu	37	6	152382234	152382234	+	Silent	SNP	C	C	G	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	ENST00000427531	+1	known	p.S353*	1.000	148	0%	131	36.6%	-	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
MAS1	4142	genome.wustl.edu	37	6	160328587	160328587	+	Silent	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_002377.2	+1	reviewed	p.T200	0.791	70	0%	74	27%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GTF2IRD1	9569	genome.wustl.edu	37	7	74015504	74015504	+	Silent	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_016328.1	+1	reviewed	p.L936	1.000	62	0%	66	54.5%	-	-	-	-	-	NULL
DCAF4L2	138009	genome.wustl.edu	37	8	88885215	88885215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_152418.3	-1	validated	p.V329M	0.993	39	0%	66	34.8%	-	-	benign(0.004)	tolerated(0.1)	neutral(0.286)	HMMSmart_WD40,superfamily_WD40_like
KANK1	23189	genome.wustl.edu	37	9	740853	740853	+	Silent	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_015158.2	+1	reviewed	p.L1205	0.001	53	0%	38	36.8%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SHC3	53358	genome.wustl.edu	37	9	91660725	91660725	+	Silent	SNP	A	A	G	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_016848.4	-1	validated	p.Y379	0.978	153	0%	122	21.3%	-	-	-	-	-	NULL
BRD3	8019	genome.wustl.edu	37	9	136905382	136905382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_007371.3	-1	reviewed	p.V473M	1.000	20	0%	30	63.3%	-	-	possibly_damaging(0.46)	tolerated(0.13)	neutral(0.403)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37441023	37441023	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_052997.2	+1	validated	p.Y505D	0.004	298	0.3%	269	18.2%	-	-	benign(0)	tolerated(1)	-	NULL
LOC646360	646360	genome.wustl.edu	37	10	37627448	37627450	+	RNA	DEL	ATC	ATC	-	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	XR_078419.1	+1	model	NULL	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
MYOF	26509	genome.wustl.edu	37	10	95085591	95085591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_013451.3	-1	reviewed	p.I1755V	0.952	85	0%	77	55.8%	-	-	possibly_damaging(0.767)	tolerated(0.13)	deleterious(0.537)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
HMX2	3167	genome.wustl.edu	37	10	124907997	124907997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_005519.1	+1	provisional	p.R35W	0.983	12	0%	19	31.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAM12	8038	genome.wustl.edu	37	10	127787041	127787041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_003474.4	-1	reviewed	p.G317C	1.000	32	0%	40	45%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
TCERG1L	256536	genome.wustl.edu	37	10	133058658	133058658	+	Silent	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_174937.3	-1	validated	p.I240	0.022	20	0%	24	45.8%	-	-	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1270433	1270433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_002458.1	+1	validated	p.S4111L	0.045	110	0%	113	16.8%	-	-	unknown(0)	-	-	NULL
EIF4G2	1982	genome.wustl.edu	37	11	10823295	10823295	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	ENST00000429377	-1	known	p.Q515H	1.000	82	0%	88	13.6%	-	-	benign(0.002)	tolerated(0.21)	neutral(0.044)	NULL
QSER1	79832	genome.wustl.edu	37	11	32975639	32975641	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_001076786.1	+1	provisional	p.E1344in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CTNND1	1500	genome.wustl.edu	37	11	57572170	57572171	+	Frame_Shift_Ins	INS	-	-	ACTT	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_001085458.1	+1	validated	p.R549fs	1.000:0.998	-	-	-	-	-	-	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
AHNAK	79026	genome.wustl.edu	37	11	62286963	62286963	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_001620.1	-1	validated	p.K4976*	1.000	44	0%	49	42.9%	-	-	-	-	-	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103068672	103068672	+	Silent	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_001080463.1	+1	reviewed	p.Y2573	1.000	66	0%	40	20%	-	-	-	-	-	NULL
CD163L1	283316	genome.wustl.edu	37	12	7531680	7531680	+	Silent	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_174941.4	-1	reviewed	p.S755	0.000	42	0%	38	44.7%	-	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
OR6C1	390321	genome.wustl.edu	37	12	55714571	55714571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_001005182.1	+1	provisional	p.N63I	0.973	79	0%	60	50%	-	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CEP290	80184	genome.wustl.edu	37	12	88519137	88519137	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_025114.3	-1	reviewed	p.E359Q	1.000	131	0%	143	11.2%	-	-	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102147163	102147163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_024312.4	-1	reviewed	p.E1197K	1.000	73	0%	78	11.5%	-	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	NULL
SLITRK5	26050	genome.wustl.edu	37	13	88329608	88329608	+	Silent	SNP	C	C	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_015567.1	+1	validated	p.G655	0.002	48	0%	47	12.8%	-	-	-	-	-	NULL
CPSF2	53981	genome.wustl.edu	37	14	92597338	92597338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_017437.1	+1	validated	p.I4V	1.000	84	0%	81	45.7%	-	-	benign(0.169)	tolerated(0.36)	neutral(0.036)	NULL
MYO5A	4644	genome.wustl.edu	37	15	52681434	52681434	+	Splice_Site	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_000259.3	-1	reviewed	e13+1	1.000	104	0%	70	32.9%	-	-	-	-	-	-
ADAMTSL3	57188	genome.wustl.edu	37	15	84683327	84683327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_207517.2	+1	validated	p.R1336I	1.000	136	0%	127	14.2%	-	-	benign(0.167)	tolerated(0.06)	neutral(0.338)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TP53	7157	genome.wustl.edu	37	17	7578500	7578500	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_000546.4	-1	reviewed	p.Q144*	0.999	29	0%	26	57.7%	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
SPOP	8405	genome.wustl.edu	37	17	47696599	47696599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_001007226.1	-1	reviewed	p.M117V	1.000	130	0%	149	75.8%	-	-	possibly_damaging(0.774)	tolerated(0.2)	neutral(0.337)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
RNF213	57674	genome.wustl.edu	37	17	78320688	78320688	+	Silent	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	ENST00000508628	+1	known	p.D2851	1.000	38	0%	29	48.3%	-	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD30B	374860	genome.wustl.edu	37	18	14763908	14763909	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_001145029.1	+1	validated	p.K348fs	0.009:0.009	-	-	-	-	-	-	-	-	-	NULL
NOL4	8715	genome.wustl.edu	37	18	31599446	31599446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_003787.3	-1	validated	p.E298K	1.000	145	0%	150	16%	-	-	probably_damaging(0.987)	tolerated(0.11)	deleterious(0.708)	NULL
LOC284288	284288	genome.wustl.edu	37	18	55506056	55506056	+	Frame_Shift_Del	DEL	G	G	-	rs141969765	byCluster;by1000genomes	TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	XM_210365.1	+1	model	p.E117fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ZNF831	128611	genome.wustl.edu	37	20	57766598	57766598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_178457.1	+1	provisional	p.A175V	0.179	8	0.000	20	0.700	-	-	possibly_damaging(0.495)	tolerated(0.23)	neutral(0.207)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MEI1	150365	genome.wustl.edu	37	22	42166878	42166878	+	Silent	SNP	C	C	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_152513.3	+1	validated	p.T819	0.000	82	0%	61	31.1%	-	-	-	-	-	NULL
ENSG00000212884	0	genome.wustl.edu	37	GL000205.1	117657	117657	+	Silent	SNP	G	G	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	ENST00000391571	+1	known	p.T96	NULL	13	0%	37	21.6%	-	-	-	-	-	HMMPfam_2-Hacid_dh
ENSG00000212884	0	genome.wustl.edu	37	GL000205.1	117722	117722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	ENST00000391571	+1	known	p.I118T	NULL	22	0%	29	20.7%	-	-	benign(0)	tolerated(1)	-	NULL
FAM47A	158724	genome.wustl.edu	37	X	34149707	34149707	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_203408.3	-1	validated	p.T230S	0.001	38	0%	37	35.1%	-	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
DDX3X	1654	genome.wustl.edu	37	X	41202521	41202521	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_001356.3	+1	reviewed	p.R199P	1.000	84	0%	94	31.9%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
USP11	8237	genome.wustl.edu	37	X	47101047	47101047	+	Silent	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_004651.3	+1	reviewed	p.V419	1.000	89	0%	121	38%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZNF81	347344	genome.wustl.edu	37	X	47775608	47775608	+	Silent	SNP	T	T	C	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_007137.3	+1	reviewed	p.T521	0.999	49	0%	33	42.4%	-	-	-	-	-	superfamily_SSF57667
HDAC6	10013	genome.wustl.edu	37	X	48673381	48673381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_006044.2	+1	reviewed	p.A358T	0.984	27	0%	29	34.5%	-	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
RHOXF2B	727940	genome.wustl.edu	37	X	119211110	119211110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_001099685.1	-1	provisional	p.G75R	0.000	43	0%	58	44.8%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
OCRL	4952	genome.wustl.edu	37	X	128696373	128696373	+	Missense_Mutation	SNP	C	C	T	rs137853263	byCluster	TCGA-DI-A1NN-01A-11D-A16D-09	TCGA-DI-A1NN-11A-21D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a3ea3cc1-a60e-4cdf-aad1-fd89bd3a9041	7abfc125-0b77-4a32-98e9-350c6c66a770	NM_000276.3	+1	reviewed	p.R318C	1.000	139	0%	132	36.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
