Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTN2	0	genome.wustl.edu	37	1	236883433	236883433	+	Silent	SNP	C	C	A			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	236883433	236883433	C	A	SNP	ACTN2	ENST00000366578	human	ensembl	69_37n	+1	known	silent	c.390	p.T130	0.981	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN2	HGNC	ENSG00000077522	479	0	0.00	399	105	20.83	-	-	-
C19orf25	0	genome.wustl.edu	37	19	1475137	1475137	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	19	1475137	1475137	C	G	SNP	C19orf25	ENST00000436106	human	ensembl	69_37n	-1	known	missense	c.251	p.R84T	0.000	NULL	NULL	-	no_errors	C19orf25	HGNC	ENSG00000119559	17	0	0.00	3	5	62.50	-	-	-
C21orf119	0	genome.wustl.edu	37	21	33765616	33765616	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	21	33765616	33765616	G	C	SNP	C21orf119	ENST00000534991	human	ensembl	69_37n	+1	known	missense	c.85	p.A29P	0.000	NULL	NULL	-	no_errors	C21orf119	HGNC	ENSG00000256073	83	0	0.00	36	45	54.88	-	-	-
CEP128	0	genome.wustl.edu	37	14	81382827	81382827	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	14	81382827	81382827	G	T	SNP	CEP128	ENST00000281129	human	ensembl	69_37n	-1	known	missense	c.65	p.A22D	0.699	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629	332	0	0.00	199	177	46.95	-	-	-
CHI3L1	0	genome.wustl.edu	37	1	203152855	203152855	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	203152855	203152855	G	C	SNP	CHI3L1	ENST00000255409	human	ensembl	69_37n	-1	known	missense	c.379	p.L127V	1.000	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048	287	0	0.00	272	68	20.00	-	-	-
CNN2	0	genome.wustl.edu	37	19	1037646	1037646	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	19	1037646	1037646	C	-	DEL	CNN2	ENST00000263097	human	ensembl	69_37n	+1	known	frame_shift_del	c.677	p.R227fs	1.000	pfam_Calponin_repeat,pfscan_Calponin_repeat	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN2	HGNC	ENSG00000064666	13	0	0.00	4	2	33.33	-	-	-
CSPG4	0	genome.wustl.edu	37	15	75969495	75969495	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	15	75969495	75969495	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	missense	c.5365	p.G1789S	0.870	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	25	0	0.00	13	9	40.91	-	-	-
DAPK1	0	genome.wustl.edu	37	9	90266523	90266523	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	9	90266523	90266523	G	A	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	+1	known	missense	c.1708	p.V570I	0.012	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	391	0	0.00	226	82	26.62	-	-	-
DSP	0	genome.wustl.edu	37	6	7570674	7570674	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	6	7570674	7570674	G	A	SNP	DSP	ENST00000379802	human	ensembl	69_37n	+1	known	missense	c.1579	p.E527K	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696	186	0	0.00	205	74	26.52	-	-	-
DYRK1A	0	genome.wustl.edu	37	21	38884440	38884440	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	21	38884440	38884440	A	G	SNP	DYRK1A	ENST00000398960	human	ensembl	69_37n	+1	known	missense	c.1898	p.Y633C	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540	261	0	0.00	137	134	49.45	-	-	-
EED	0	genome.wustl.edu	37	11	85961453	85961453	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	11	85961453	85961453	A	G	SNP	EED	ENST00000263360	human	ensembl	69_37n	+1	known	missense	c.230	p.K77R	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EED	HGNC	ENSG00000074266	214	0	0.00	171	76	30.77	-	-	-
EFTUD2	0	genome.wustl.edu	37	17	42929146	42929146	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	17	42929146	42929146	G	A	SNP	EFTUD2	ENST00000426333	human	ensembl	69_37n	-1	known	missense	c.2755	p.R919C	0.999	NULL	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD2	HGNC	ENSG00000108883	110	0	0.00	26	73	73.74	-	-	-
ETS1	0	genome.wustl.edu	37	11	128443000	128443000	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	11	128443000	128443000	C	T	SNP	ETS1	ENST00000392668	human	ensembl	69_37n	-1	known	missense	c.26	p.G9E	0.000	pirsf_Transforming_factor_C-ets	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pirsf_Transforming_factor_C-ets,pfscan_Ets,prints_Ets	-	no_errors	ETS1	HGNC	ENSG00000134954	141	0	0.00	77	73	48.67	-	-	-
FLRT1	0	genome.wustl.edu	37	11	63884260	63884260	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	11	63884260	63884260	C	T	SNP	FLRT1	ENST00000246841	human	ensembl	69_37n	+1	known	missense	c.521	p.A174V	0.899	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT1	HGNC	ENSG00000126500	13	0	0.00	10	6	37.50	-	-	-
GAK	0	genome.wustl.edu	37	4	860994	860994	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	4	860994	860994	A	G	SNP	GAK	ENST00000510799	human	ensembl	69_37n	-1	novel	missense	c.13	p.C5R	0.003	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GAK	HGNC	ENSG00000178950	15	0	0.00	12	12	50.00	-	-	-
GPR61	0	genome.wustl.edu	37	1	110086562	110086562	+	Silent	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	110086562	110086562	C	T	SNP	GPR61	ENST00000404129	human	ensembl	69_37n	+1	known	silent	c.918	p.F306	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR61	HGNC	ENSG00000156097	207	0	0.00	161	48	22.97	-	-	-
HLA-J	0	genome.wustl.edu	37	6	29974759	29974759	+	RNA	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	6	29974759	29974759	C	T	SNP	HLA-J	ENST00000462773	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622	237	0	0.00	174	36	17.14	-	-	-
HS6ST1	0	genome.wustl.edu	37	2	129025860	129025860	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	2	129025860	129025860	C	T	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.1112	p.R371H	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	37	0	0.00	20	4	16.00	-	-	-
KCNJ6	0	genome.wustl.edu	37	21	39086565	39086565	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	21	39086565	39086565	T	C	SNP	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	missense	c.895	p.K299E	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	204	0	0.00	94	84	47.19	-	-	-
LHFPL4	0	genome.wustl.edu	37	3	9594129	9594129	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	3	9594129	9594129	C	G	SNP	LHFPL4	ENST00000287585	human	ensembl	69_37n	-1	known	missense	c.235	p.G79R	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL4	HGNC	ENSG00000156959	51	0	0.00	50	17	25.37	-	-	-
MGA	0	genome.wustl.edu	37	15	42032290	42032290	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	15	42032290	42032290	C	T	SNP	MGA	ENST00000219905	human	ensembl	69_37n	+1	known	missense	c.4474	p.R1492C	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	249	0	0.00	251	64	20.32	-	-	-
MYH4	0	genome.wustl.edu	37	17	10346782	10346782	+	Silent	SNP	G	G	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	17	10346782	10346782	G	T	SNP	MYH4	ENST00000255381	human	ensembl	69_37n	-1	known	silent	c.5730	p.A1910	0.086	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	477	0	0.00	235	150	38.86	-	-	-
NR1H2	0	genome.wustl.edu	37	19	50885244	50885244	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	19	50885244	50885244	A	T	SNP	NR1H2	ENST00000253727	human	ensembl	69_37n	+1	known	missense	c.1049	p.N350I	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Ecdystd_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	35	0	0.00	23	27	54.00	-	-	-
OMA1	0	genome.wustl.edu	37	1	59004965	59004966	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	59004965	59004966	-	T	INS	OMA1	ENST00000371226	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2_1	p.M1fs	0.992:0.991	NULL	pfam_Peptidase_M48	-	no_errors	OMA1	HGNC	ENSG00000162600	18	0	0.00	13	2	13.33	-	-	-
PCDHA1	0	genome.wustl.edu	37	5	140167773	140167773	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	5	140167773	140167773	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	69_37n	+1	known	missense	c.1898	p.T633M	0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	82	0	0.00	80	31	27.93	-	-	-
PCDHGB2	0	genome.wustl.edu	37	5	140741005	140741005	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	5	140741005	140741005	A	G	SNP	PCDHGB2	ENST00000522605	human	ensembl	69_37n	+1	known	missense	c.1303	p.S435G	0.806	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB2	HGNC	ENSG00000253910	103	0	0.00	67	50	42.74	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	213	0	0.00	184	226	55.12	-	-	-
PLCH2	0	genome.wustl.edu	37	1	2430566	2430566	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	2430566	2430566	C	T	SNP	PLCH2	ENST00000419816	human	ensembl	69_37n	+1	known	missense	c.362	p.T121I	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PLipase_C_Pinositol-sp_Y,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PLipase_C_Pinositol-sp_Y	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PLCH2	HGNC	ENSG00000149527	96	0	0.00	87	41	32.03	-	-	-
PPL	0	genome.wustl.edu	37	16	4947750	4947750	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	16	4947750	4947750	C	T	SNP	PPL	ENST00000345988	human	ensembl	69_37n	-1	known	missense	c.898	p.A300T	0.998	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898	119	0	0.00	103	21	16.94	-	-	-
SHROOM2	0	genome.wustl.edu	37	X	9905362	9905362	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	X	9905362	9905362	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	69_37n	+1	known	missense	c.3776	p.R1259H	1.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	75	0	0.00	45	31	40.79	-	-	-
STAB1	0	genome.wustl.edu	37	3	52543930	52543930	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	3	52543930	52543930	G	-	DEL	STAB1	ENST00000321725	human	ensembl	69_37n	+1	known	frame_shift_del	c.2392	p.V800fs	0.999	smart_EGF-like	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EGF-like,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	33	0	0.00	17	3	15.00	-	-	-
TEX15	0	genome.wustl.edu	37	8	30695338	30695338	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	8	30695338	30695338	C	G	SNP	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	missense	c.7313	p.R2438T	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	345	0	0.00	410	228	35.74	-	-	-
TEX15	0	genome.wustl.edu	37	8	30695359	30695359	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	8	30695359	30695359	T	-	DEL	TEX15	ENST00000256246	human	ensembl	69_37n	-1	known	frame_shift_del	c.7292	p.N2431fs	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	390	0	0.00	490	243	32.10	-	-	-
TMEM117	0	genome.wustl.edu	37	12	44238679	44238679	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	12	44238679	44238679	C	T	SNP	TMEM117	ENST00000536799	human	ensembl	69_37n	+1	known	missense	c.13	p.H5Y	1.000	NULL	NULL	-	no_errors	TMEM117	HGNC	ENSG00000139173	191	0	0.00	136	73	34.93	-	-	-
TP53	0	genome.wustl.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	17	7578271	7578271	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.578	p.H193R	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	300	0	0.00	88	111	55.50	-	-	-
TSEN15	0	genome.wustl.edu	37	1	184023924	184023924	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15E-06A-11D-A12B-09	TCGA-E2-A15E-10A-01D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3d3c80e-c6f3-4fe8-809b-e710755e1200	1cdbe17e-c0ed-45a4-b4bb-6464cfb60817	1	184023924	184023924	G	T	SNP	TSEN15	ENST00000361641	human	ensembl	69_37n	+1	known	missense	c.280	p.G94C	0.911	pfam_tRNA-endonuc_su_Sen15	pfam_tRNA-endonuc_su_Sen15	-	no_errors	TSEN15	HGNC	ENSG00000198860	302	1	0.33	292	59	16.81	-	-	-
