Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACLY	0	genome.wustl.edu	37	17	40042364	40042364	+	Splice_Site	SNP	C	C	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	17	40042364	40042364	C	T	SNP	ACLY	ENST00000352035	human	ensembl	69_37n	-1	known	splice_site	c.2072+1	e17+1	1.000	-	-	-	no_errors	ACLY	HGNC	ENSG00000131473	82	0	0.00	50	33	39.76	-	-	-
BTNL8	0	genome.wustl.edu	37	5	180377233	180377233	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	180377233	180377233	G	A	SNP	BTNL8	ENST00000340184	human	ensembl	69_37n	+1	known	missense	c.1192	p.V398I	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like	-	no_errors	BTNL8	HGNC	ENSG00000113303	162	0	0.00	35	101	74.26	-	-	-
C7orf23	0	genome.wustl.edu	37	7	86825961	86825961	+	Silent	SNP	C	C	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	7	86825961	86825961	C	T	SNP	C7orf23	ENST00000257637	human	ensembl	69_37n	-1	known	silent	c.348	p.V116	1.000	pfam_DUF2678	pfam_DUF2678	-	no_errors	C7orf23	HGNC	ENSG00000135185	146	0	0.00	82	56	40.58	-	-	-
CABIN1	0	genome.wustl.edu	37	22	24463095	24463095	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	22	24463095	24463095	C	-	DEL	CABIN1	ENST00000263119	human	ensembl	69_37n	+1	known	frame_shift_del	c.2195	p.I733fs	0.996	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	101	0	0.00	22	26	54.17	-	-	-
CHD1	0	genome.wustl.edu	37	5	98236686	98236686	+	Silent	SNP	T	T	G			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	98236686	98236686	T	G	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	silent	c.688	p.R230	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	376	0	0.00	200	78	27.96	-	-	-
COPA	0	genome.wustl.edu	37	1	160261650	160261650	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	160261650	160261650	G	C	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	missense	c.3244	p.L1082V	1.000	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	215	0	0.00	96	40	29.20	-	-	-
CUL7	0	genome.wustl.edu	37	6	43014812	43014812	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	6	43014812	43014812	G	-	DEL	CUL7	ENST00000535468	human	ensembl	69_37n	-1	known	frame_shift_del	c.2455	p.L819fs	1.000	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090	62	0	0.00	43	13	23.21	-	-	-
ECE1	0	genome.wustl.edu	37	1	21546502	21546502	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	21546502	21546502	G	C	SNP	ECE1	ENST00000374893	human	ensembl	69_37n	-1	known	missense	c.2259	p.F753L	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298	182	0	0.00	34	53	60.92	-	-	-
FER1L6	0	genome.wustl.edu	37	8	125047696	125047696	+	Splice_Site	SNP	G	G	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	8	125047696	125047696	G	T	SNP	FER1L6	ENST00000399018	human	ensembl	69_37n	+1	known	splice_site	c.2464+1	e18+1	1.000	-	-	-	no_errors	FER1L6	HGNC	ENSG00000214814	83	0	0.00	92	34	26.98	-	-	-
GOLGA6L2	0	genome.wustl.edu	37	15	23685786	23685786	+	Silent	SNP	G	G	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	15	23685786	23685786	G	A	SNP	GOLGA6L2	ENST00000567107	human	ensembl	69_37n	-1	putative	silent	c.1836	p.D612	0.069	NULL	NULL	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450	28	0	0.00	27	7	20.59	-	-	-
GPR179	0	genome.wustl.edu	37	17	36491508	36491508	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	17	36491508	36491508	T	C	SNP	GPR179	ENST00000342292	human	ensembl	69_37n	-1	known	missense	c.1372	p.I458V	0.834	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	104	0	0.00	55	21	27.63	-	-	-
HMGB2	0	genome.wustl.edu	37	4	174254765	174254765	+	Missense_Mutation	SNP	T	T	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	4	174254765	174254765	T	A	SNP	HMGB2	ENST00000296503	human	ensembl	69_37n	-1	known	missense	c.36	p.K12N	0.941	superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGB2	HGNC	ENSG00000164104	129	0	0.00	87	30	25.64	-	-	-
HNRNPH1	0	genome.wustl.edu	37	5	179044055	179044055	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	179044055	179044055	A	T	SNP	HNRNPH1	ENST00000356731	human	ensembl	69_37n	-1	known	missense	c.1114	p.Y372N	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH1	HGNC	ENSG00000169045	268	0	0.00	91	63	40.91	-	-	-
KIAA1755	0	genome.wustl.edu	37	20	36869418	36869418	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	20	36869418	36869418	G	A	SNP	KIAA1755	ENST00000279024	human	ensembl	69_37n	-1	known	missense	c.1115	p.S372F	0.037	NULL	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	41	0	0.00	30	12	28.57	-	-	-
KISS1R	0	genome.wustl.edu	37	19	918593	918593	+	Silent	SNP	C	C	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	918593	918593	C	T	SNP	KISS1R	ENST00000234371	human	ensembl	69_37n	+1	known	silent	c.294	p.F98	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_KiSS_1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_NPY_rcpt	-	no_errors	KISS1R	HGNC	ENSG00000116014	38	0	0.00	8	5	38.46	-	-	-
LAMA5	0	genome.wustl.edu	37	20	60886146	60886147	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	20	60886146	60886147	TG	-	DEL	LAMA5	ENST00000252999	human	ensembl	69_37n	-1	known	frame_shift_del	c.10093_10092	p.S3367fs	0.033:0.035	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	26	0	0.00	26	7	20.59	-	-	-
LOXL3	0	genome.wustl.edu	37	2	74762803	74762803	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	2	74762803	74762803	C	A	SNP	LOXL3	ENST00000264094	human	ensembl	69_37n	-1	known	missense	c.1328	p.G443V	1.000	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_Srcr_rcpt	pfam_Lysyl_oxidase,pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Lysyl_oxidase,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	LOXL3	HGNC	ENSG00000115318	45	0	0.00	24	19	44.19	-	-	-
LRRC4B	0	genome.wustl.edu	37	19	51021653	51021653	+	Silent	SNP	C	C	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	51021653	51021653	C	A	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	silent	c.1317	p.T439	0.999	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	40	0	0.00	23	8	25.81	-	-	-
MAGEB1	0	genome.wustl.edu	37	X	30268880	30268880	+	Silent	SNP	T	T	C			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	X	30268880	30268880	T	C	SNP	MAGEB1	ENST00000378981	human	ensembl	69_37n	+1	known	silent	c.270	p.N90	0.000	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	72	0	0.00	42	15	26.32	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56160578	56160579	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	56160578	56160579	CA	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.852_853	p.P286fs	1.000:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	110	0	0.00	66	30	31.25	-	-	-
MCCC1	0	genome.wustl.edu	37	3	182817227	182817228	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	3	182817227	182817228	-	T	INS	MCCC1	ENST00000265594	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2_1	p.M1fs	0.283:0.272	NULL	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070	12	0	0.00	5	5	50.00	-	-	-
MTOR	0	genome.wustl.edu	37	1	11188177	11188177	+	Missense_Mutation	SNP	T	T	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	11188177	11188177	T	A	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	missense	c.5917	p.I1973F	1.000	pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	225	0	0.00	43	66	60.55	-	-	-
NEK5	0	genome.wustl.edu	37	13	52684534	52684534	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	13	52684534	52684534	T	C	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.409	p.S137G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	417	0	0.00	72	107	59.78	-	-	-
PCDHA3	0	genome.wustl.edu	37	5	140182767	140182767	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	140182767	140182767	C	T	SNP	PCDHA3	ENST00000522353	human	ensembl	69_37n	+1	known	missense	c.1985	p.T662M	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408	50	0	0.00	20	23	53.49	-	-	-
RBM19	0	genome.wustl.edu	37	12	114386694	114386694	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	12	114386694	114386694	C	A	SNP	RBM19	ENST00000261741	human	ensembl	69_37n	-1	known	missense	c.1220	p.R407L	0.701	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	RBM19	HGNC	ENSG00000122965	161	0	0.00	164	48	22.64	-	-	-
SERPINA5	0	genome.wustl.edu	37	14	95053768	95053768	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	14	95053768	95053768	C	A	SNP	SERPINA5	ENST00000329597	human	ensembl	69_37n	+1	known	missense	c.69	p.H23Q	0.000	superfamily_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488	61	0	0.00	26	15	36.59	-	-	-
SLC35F3	0	genome.wustl.edu	37	1	234367371	234367371	+	Silent	SNP	C	C	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	234367371	234367371	C	T	SNP	SLC35F3	ENST00000366618	human	ensembl	69_37n	+1	known	silent	c.492	p.D164	0.993	NULL	pfam_DMT,pfam_DUF250,pfam_DUF914_euk	-	no_errors	SLC35F3	HGNC	ENSG00000183780	70	0	0.00	53	19	26.39	-	-	-
SOAT1	0	genome.wustl.edu	37	1	179310278	179310278	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	179310278	179310278	C	T	SNP	SOAT1	ENST00000367619	human	ensembl	69_37n	+1	known	missense	c.613	p.H205Y	0.001	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252	318	0	0.00	163	90	35.57	-	-	-
STAG1	0	genome.wustl.edu	37	3	136078054	136078054	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	3	136078054	136078054	G	A	SNP	STAG1	ENST00000383202	human	ensembl	69_37n	-1	known	missense	c.2872	p.R958C	0.998	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	167	0	0.00	35	65	65.00	-	-	-
TACSTD2	0	genome.wustl.edu	37	1	59042071	59042071	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	59042071	59042071	A	C	SNP	TACSTD2	ENST00000371225	human	ensembl	69_37n	-1	known	missense	c.758	p.V253G	0.999	NULL	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	TACSTD2	HGNC	ENSG00000184292	37	0	0.00	25	5	16.67	-	-	-
TCOF1	0	genome.wustl.edu	37	5	149773041	149773041	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	5	149773041	149773041	C	T	SNP	TCOF1	ENST00000451292	human	ensembl	69_37n	+1	known	missense	c.3818	p.A1273V	0.000	NULL	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	156	0	0.00	83	50	37.59	-	-	-
TFAM	0	genome.wustl.edu	37	10	60148570	60148570	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	10	60148570	60148570	A	-	DEL	TFAM	ENST00000487519	human	ensembl	69_37n	+1	known	frame_shift_del	c.432	p.E148fs	0.006	superfamily_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TFAM	HGNC	ENSG00000108064	86	0	0.00	61	7	10.29	-	-	-
UBE4B	0	genome.wustl.edu	37	1	10205077	10205077	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	1	10205077	10205077	C	T	SNP	UBE4B	ENST00000343090	human	ensembl	69_37n	+1	known	missense	c.2443	p.R815C	1.000	pfam_Ub_conjug_fac_E4_core	pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain	-	no_errors	UBE4B	HGNC	ENSG00000130939	116	0	0.00	19	37	66.07	-	-	-
USP32P1	0	genome.wustl.edu	37	17	16691307	16691307	+	RNA	SNP	T	T	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	17	16691307	16691307	T	A	SNP	USP32P1	ENST00000393005	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	USP32P1	HGNC	ENSG00000188933	55	0	0.00	34	12	26.09	-	-	-
WASH3P	0	genome.wustl.edu	37	15	102516165	102516165	+	RNA	SNP	C	C	G			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	15	102516165	102516165	C	G	SNP	WASH3P	ENST00000557932	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596	24	0	0.00	8	2	20.00	-	-	-
ZNF492	0	genome.wustl.edu	37	19	22847203	22847203	+	Silent	SNP	G	G	A			TCGA-E2-A15O-01A-11D-A10Y-09	TCGA-E2-A15O-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39c1df91-b670-4f6b-b5ff-dbb6b66d30af	6fb74fc6-17aa-4a5c-ba62-17a1609eef50	19	22847203	22847203	G	A	SNP	ZNF492	ENST00000456783	human	ensembl	69_37n	+1	known	silent	c.732	p.K244	0.957	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676	24	0	0.00	20	4	16.67	-	-	-
