Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALDH1A3	0	genome.wustl.edu	37	15	101447414	101447414	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	15	101447414	101447414	C	T	SNP	ALDH1A3	ENST00000329841	human	ensembl	69_37n	+1	known	missense	c.1322	p.A441V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	251	0	0.00	200	66	24.81	-	-	-
ALDH1A3	0	genome.wustl.edu	37	15	101447414	101447414	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	15	101447414	101447414	C	T	SNP	ALDH1A3	ENST00000329841	human	ensembl	69_37n	+1	known	missense	c.1322	p.A441V	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254	113	0	0.00	200	66	24.81	-	-	-
ARHGAP11A	0	genome.wustl.edu	37	15	32929655	32929655	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	15	32929655	32929655	C	A	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	+1	known	nonsense	c.2681	p.S894*	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	246	0	0.00	147	58	28.29	-	-	-
ARHGAP11A	0	genome.wustl.edu	37	15	32929655	32929655	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	15	32929655	32929655	C	A	SNP	ARHGAP11A	ENST00000361627	human	ensembl	69_37n	+1	known	nonsense	c.2681	p.S894*	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826	102	0	0.00	147	58	28.29	-	-	-
BCOR	0	genome.wustl.edu	37	X	39922954	39922954	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	X	39922954	39922954	T	C	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.3754	p.I1252V	0.915	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	446	0	0.00	318	118	27.00	-	-	-
BCOR	0	genome.wustl.edu	37	X	39922954	39922954	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	X	39922954	39922954	T	C	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	missense	c.3754	p.I1252V	0.915	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	247	0	0.00	318	118	27.00	-	-	-
BSN	0	genome.wustl.edu	37	3	49698237	49698237	+	Nonsense_Mutation	SNP	A	A	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	3	49698237	49698237	A	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	+1	known	nonsense	c.8959	p.K2987*	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	20	0	0.00	18	5	21.74	-	-	-
BSN	0	genome.wustl.edu	37	3	49698237	49698237	+	Nonsense_Mutation	SNP	A	A	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	3	49698237	49698237	A	T	SNP	BSN	ENST00000296452	human	ensembl	69_37n	+1	known	nonsense	c.8959	p.K2987*	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	13	0	0.00	18	5	21.74	-	-	-
CCSAP	0	genome.wustl.edu	37	1	229461134	229461134	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	1	229461134	229461134	T	G	SNP	CCSAP	ENST00000284617	human	ensembl	69_37n	-1	known	missense	c.661	p.K221Q	1.000	NULL	NULL	-	no_errors	CCSAP	HGNC	ENSG00000154429	379	0	0.00	285	32	10.09	-	-	-
CCSAP	0	genome.wustl.edu	37	1	229461134	229461134	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	1	229461134	229461134	T	G	SNP	CCSAP	ENST00000284617	human	ensembl	69_37n	-1	known	missense	c.661	p.K221Q	1.000	NULL	NULL	-	no_errors	CCSAP	HGNC	ENSG00000154429	224	0	0.00	285	32	10.09	-	-	-
CXorf23	0	genome.wustl.edu	37	X	19971988	19971988	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	X	19971988	19971988	G	T	SNP	CXorf23	ENST00000340625	human	ensembl	69_37n	-1	known	missense	c.298	p.H100N	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CXorf23	HGNC	ENSG00000173681	364	0	0.00	301	110	26.76	-	-	-
CXorf23	0	genome.wustl.edu	37	X	19971988	19971988	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	X	19971988	19971988	G	T	SNP	CXorf23	ENST00000340625	human	ensembl	69_37n	-1	known	missense	c.298	p.H100N	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CXorf23	HGNC	ENSG00000173681	262	1	0.38	301	110	26.76	-	-	-
DDAH1	0	genome.wustl.edu	37	1	85790543	85790543	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	1	85790543	85790543	G	T	SNP	DDAH1	ENST00000284031	human	ensembl	69_37n	-1	known	missense	c.621	p.H207Q	0.999	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH1	HGNC	ENSG00000153904	258	0	0.00	191	93	32.75	-	-	-
DDAH1	0	genome.wustl.edu	37	1	85790543	85790543	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	1	85790543	85790543	G	T	SNP	DDAH1	ENST00000284031	human	ensembl	69_37n	-1	known	missense	c.621	p.H207Q	0.999	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH1	HGNC	ENSG00000153904	112	0	0.00	191	93	32.75	-	-	-
EXOC3	0	genome.wustl.edu	37	5	447698	447698	+	Silent	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	5	447698	447698	C	T	SNP	EXOC3	ENST00000315013	human	ensembl	69_37n	+1	known	silent	c.195	p.L65	0.617	NULL	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104	47	0	0.00	21	13	38.24	-	-	-
EXOC3	0	genome.wustl.edu	37	5	447698	447698	+	Silent	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	5	447698	447698	C	T	SNP	EXOC3	ENST00000315013	human	ensembl	69_37n	+1	known	silent	c.195	p.L65	0.617	NULL	pfam_Sec6	-	no_errors	EXOC3	HGNC	ENSG00000180104	21	0	0.00	21	13	38.24	-	-	-
FAM13A	0	genome.wustl.edu	37	4	89744132	89744132	+	Silent	SNP	C	C	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	4	89744132	89744132	C	A	SNP	FAM13A	ENST00000508369	human	ensembl	69_37n	-1	known	silent	c.24	p.L8	1.000	NULL	NULL	-	no_errors	FAM13A	HGNC	ENSG00000138640	161	1	0.62	115	36	23.84	-	-	-
FAM13A	0	genome.wustl.edu	37	4	89744132	89744132	+	Silent	SNP	C	C	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	4	89744132	89744132	C	A	SNP	FAM13A	ENST00000508369	human	ensembl	69_37n	-1	known	silent	c.24	p.L8	1.000	NULL	NULL	-	no_errors	FAM13A	HGNC	ENSG00000138640	82	0	0.00	115	36	23.84	-	-	-
FAM72D	0	genome.wustl.edu	37	1	143910091	143910091	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	1	143910091	143910091	C	T	SNP	FAM72D	ENST00000400889	human	ensembl	69_37n	-1	known	missense	c.217	p.A73T	1.000	NULL	NULL	-	no_errors	FAM72D	HGNC	ENSG00000215784	76	0	0.00	50	9	15.25	-	-	-
FAM72D	0	genome.wustl.edu	37	1	143910091	143910091	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	1	143910091	143910091	C	T	SNP	FAM72D	ENST00000400889	human	ensembl	69_37n	-1	known	missense	c.217	p.A73T	1.000	NULL	NULL	-	no_errors	FAM72D	HGNC	ENSG00000215784	19	0	0.00	50	9	15.25	-	-	-
GABRG1	0	genome.wustl.edu	37	4	46053637	46053637	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	4	46053637	46053637	G	C	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	missense	c.935	p.T312S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	247	0	0.00	170	41	19.43	-	-	-
GABRG1	0	genome.wustl.edu	37	4	46053637	46053637	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	4	46053637	46053637	G	C	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	missense	c.935	p.T312S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	200	0	0.00	170	41	19.43	-	-	-
GPR133	0	genome.wustl.edu	37	12	131616342	131616342	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	12	131616342	131616342	G	A	SNP	GPR133	ENST00000261654	human	ensembl	69_37n	+1	known	missense	c.2248	p.G750R	0.997	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	174	0	0.00	142	38	20.99	-	-	-
GPR133	0	genome.wustl.edu	37	12	131616342	131616342	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	12	131616342	131616342	G	A	SNP	GPR133	ENST00000261654	human	ensembl	69_37n	+1	known	missense	c.2248	p.G750R	0.997	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	72	0	0.00	142	38	20.99	-	-	-
HLA-DRB6	0	genome.wustl.edu	37	6	32522570	32522570	+	RNA	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	6	32522570	32522570	G	A	SNP	HLA-DRB6	ENST00000411500	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HLA-DRB6	HGNC	ENSG00000229391	17	0	0.00	15	5	25.00	-	-	-
HSD17B7P2	0	genome.wustl.edu	37	10	38652504	38652504	+	RNA	SNP	T	T	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	10	38652504	38652504	T	C	SNP	HSD17B7P2	ENST00000494540	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251	160	0	0.00	201	75	27.17	-	-	-
IGKV2D-30	0	genome.wustl.edu	37	2	89976393	89976393	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	2	89976393	89976393	C	-	DEL	IGKV2D-30	ENST00000474213	human	ensembl	69_37n	+1	known	frame_shift_del	c.264	p.S88fs	1.000	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGKV2D-30	HGNC	ENSG00000239571	239	0	0.00	164	52	23.42	-	-	-
IGKV2D-30	0	genome.wustl.edu	37	2	89976393	89976393	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	2	89976393	89976393	C	-	DEL	IGKV2D-30	ENST00000474213	human	ensembl	69_37n	+1	known	frame_shift_del	c.264	p.S88fs	1.000	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGKV2D-30	HGNC	ENSG00000239571	56	0	0.00	164	52	23.42	-	-	-
KCNJ6	0	genome.wustl.edu	37	21	39087022	39087022	+	Silent	SNP	T	T	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	21	39087022	39087022	T	C	SNP	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	silent	c.438	p.S146	0.659	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	165	0	0.00	87	32	26.89	-	-	-
KCNJ6	0	genome.wustl.edu	37	21	39087022	39087022	+	Silent	SNP	T	T	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	21	39087022	39087022	T	C	SNP	KCNJ6	ENST00000288309	human	ensembl	69_37n	-1	known	silent	c.438	p.S146	0.659	pfam_K_chnl_inward-rec_Kir_Cr2,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	75	0	0.00	87	32	26.89	-	-	-
KIF18B	0	genome.wustl.edu	37	17	43009058	43009058	+	Silent	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	17	43009058	43009058	G	A	SNP	KIF18B	ENST00000339151	human	ensembl	69_37n	-1	known	silent	c.1465	p.L489	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18B	HGNC	ENSG00000186185	196	0	0.00	148	61	29.19	-	-	-
KIF18B	0	genome.wustl.edu	37	17	43009058	43009058	+	Silent	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	17	43009058	43009058	G	A	SNP	KIF18B	ENST00000339151	human	ensembl	69_37n	-1	known	silent	c.1465	p.L489	0.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18B	HGNC	ENSG00000186185	102	0	0.00	148	61	29.19	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	11984671	11984672	+	Splice_Site	DEL	AG	AG	-			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	17	11984671	11984672	AG	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	splice_site_del	c.252-2_252-1	e4-1	1.000:1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	132	0	0.00	65	28	30.11	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	11984671	11984672	+	Splice_Site	DEL	AG	AG	-			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	17	11984671	11984672	AG	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	splice_site_del	c.252-2_252-1	e4-1	1.000:1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	121	0	0.00	65	28	30.11	-	-	-
MED23	0	genome.wustl.edu	37	6	131937129	131937129	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	6	131937129	131937129	G	-	DEL	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	frame_shift_del	c.794	p.P265fs	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	236	0	0.00	102	65	38.69	-	-	-
MED23	0	genome.wustl.edu	37	6	131937129	131937129	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	6	131937129	131937129	G	-	DEL	MED23	ENST00000368058	human	ensembl	69_37n	-1	known	frame_shift_del	c.794	p.P265fs	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	110	0	0.00	102	65	38.69	-	-	-
MUS81	0	genome.wustl.edu	37	11	65632201	65632201	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	11	65632201	65632201	G	T	SNP	MUS81	ENST00000308110	human	ensembl	69_37n	+1	known	missense	c.1187	p.G396V	1.000	superfamily_Restrct_endonuc-II-like	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_DNA-dir_DNA_pol_X_beta-like_N,smart_ERCC4_domain	-	no_errors	MUS81	HGNC	ENSG00000172732	121	0	0.00	68	30	30.61	-	-	-
NF1	0	genome.wustl.edu	37	17	29588873	29588876	+	Splice_Site	DEL	TAGG	TAGG	-			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	TAGG	TAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	17	29588873	29588876	TAGG	-	DEL	NF1	ENST00000358273	human	ensembl	69_37n	+1	known	splice_site_del	c.4724+4_4724+1	e36-1	0.877:1.000:1.000:1.000	-	-	-	no_errors	NF1	HGNC	ENSG00000196712	146	0	0.00	82	21	20.39	-	-	-
NF1	0	genome.wustl.edu	37	17	29588873	29588876	+	Splice_Site	DEL	TAGG	TAGG	-			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	TAGG	TAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	17	29588873	29588876	TAGG	-	DEL	NF1	ENST00000358273	human	ensembl	69_37n	+1	known	splice_site_del	c.4724+4_4724+1	e36-1	0.877:1.000:1.000:1.000	-	-	-	no_errors	NF1	HGNC	ENSG00000196712	95	0	0.00	82	21	20.39	-	-	-
PCDH10	0	genome.wustl.edu	37	4	134084410	134084410	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	4	134084410	134084410	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	+1	known	nonsense	c.3076	p.R1026*	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	43	0	0.00	31	10	23.81	-	-	-
PCDH10	0	genome.wustl.edu	37	4	134084410	134084410	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	4	134084410	134084410	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	69_37n	+1	known	nonsense	c.3076	p.R1026*	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	82	0	0.00	31	10	23.81	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	208	0	0.00	163	50	23.47	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	122	0	0.00	163	50	23.47	-	-	-
PRB1	0	genome.wustl.edu	37	12	11506225	11506225	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	12	11506225	11506225	G	A	SNP	PRB1	ENST00000500254	human	ensembl	69_37n	-1	known	missense	c.413	p.S138F	0.009	NULL	NULL	-	no_errors	PRB1	HGNC	ENSG00000251655	798	0	0.00	478	183	27.69	-	-	-
PRB1	0	genome.wustl.edu	37	12	11506225	11506225	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	12	11506225	11506225	G	A	SNP	PRB1	ENST00000500254	human	ensembl	69_37n	-1	known	missense	c.413	p.S138F	0.009	NULL	NULL	-	no_errors	PRB1	HGNC	ENSG00000251655	434	0	0.00	478	183	27.69	-	-	-
RBFOX1	0	genome.wustl.edu	37	16	7102099	7102099	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	16	7102099	7102099	G	T	SNP	RBFOX1	ENST00000547372	human	ensembl	69_37n	+1	known	missense	c.156	p.R52S	1.000	pirsf_RNA-bd_Fox-1	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328	261	0	0.00	264	68	20.48	-	-	-
RBFOX1	0	genome.wustl.edu	37	16	7102099	7102099	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	16	7102099	7102099	G	T	SNP	RBFOX1	ENST00000547372	human	ensembl	69_37n	+1	known	missense	c.156	p.R52S	1.000	pirsf_RNA-bd_Fox-1	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328	209	0	0.00	264	68	20.48	-	-	-
RLIM	0	genome.wustl.edu	37	X	73812045	73812045	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	X	73812045	73812045	G	A	SNP	RLIM	ENST00000332687	human	ensembl	69_37n	-1	known	missense	c.1105	p.R369C	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263	266	2	0.75	252	35	12.20	-	-	-
RLIM	0	genome.wustl.edu	37	X	73812045	73812045	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	X	73812045	73812045	G	A	SNP	RLIM	ENST00000332687	human	ensembl	69_37n	-1	known	missense	c.1105	p.R369C	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263	232	0	0.00	252	35	12.20	-	-	-
RNF123	0	genome.wustl.edu	37	3	49742580	49742580	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	3	49742580	49742580	G	C	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	+1	known	missense	c.2123	p.R708P	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	49	0	0.00	39	12	23.53	-	-	-
RNF123	0	genome.wustl.edu	37	3	49742580	49742580	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	3	49742580	49742580	G	C	SNP	RNF123	ENST00000327697	human	ensembl	69_37n	+1	known	missense	c.2123	p.R708P	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,smart_Znf_RING,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	RNF123	HGNC	ENSG00000164068	24	0	0.00	39	12	23.53	-	-	-
SCARA5	0	genome.wustl.edu	37	8	27845103	27845103	+	Silent	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	8	27845103	27845103	G	A	SNP	SCARA5	ENST00000354914	human	ensembl	69_37n	-1	known	silent	c.30	p.T10	0.997	NULL	pfam_Srcr_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	SCARA5	HGNC	ENSG00000168079	129	0	0.00	93	22	19.13	-	-	-
SCARA5	0	genome.wustl.edu	37	8	27845103	27845103	+	Silent	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	8	27845103	27845103	G	A	SNP	SCARA5	ENST00000354914	human	ensembl	69_37n	-1	known	silent	c.30	p.T10	0.997	NULL	pfam_Srcr_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	SCARA5	HGNC	ENSG00000168079	82	0	0.00	93	22	19.13	-	-	-
SH3TC1	0	genome.wustl.edu	37	4	8228801	8228801	+	Silent	SNP	C	C	G			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	4	8228801	8228801	C	G	SNP	SH3TC1	ENST00000245105	human	ensembl	69_37n	+1	known	silent	c.1380	p.P460	0.000	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089	37	0	0.00	27	18	40.00	-	-	-
SH3TC1	0	genome.wustl.edu	37	4	8228801	8228801	+	Silent	SNP	C	C	G			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	4	8228801	8228801	C	G	SNP	SH3TC1	ENST00000245105	human	ensembl	69_37n	+1	known	silent	c.1380	p.P460	0.000	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089	20	0	0.00	27	18	40.00	-	-	-
SMAD9	0	genome.wustl.edu	37	13	37446983	37446983	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	13	37446983	37446983	C	T	SNP	SMAD9	ENST00000379826	human	ensembl	69_37n	-1	known	missense	c.482	p.R161H	1.000	NULL	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693	362	1	0.28	254	87	25.36	-	-	-
SMAD9	0	genome.wustl.edu	37	13	37446983	37446983	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	13	37446983	37446983	C	T	SNP	SMAD9	ENST00000379826	human	ensembl	69_37n	-1	known	missense	c.482	p.R161H	1.000	NULL	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693	310	0	0.00	254	87	25.36	-	-	-
SPTBN2	0	genome.wustl.edu	37	11	66475053	66475053	+	Silent	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	11	66475053	66475053	G	C	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	silent	c.1587	p.L529	0.873	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	16	0	0.00	11	4	26.67	-	-	-
SPTBN2	0	genome.wustl.edu	37	11	66475053	66475053	+	Silent	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	11	66475053	66475053	G	C	SNP	SPTBN2	ENST00000309996	human	ensembl	69_37n	-1	known	silent	c.1587	p.L529	0.873	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,prints_PH_dom-spectrin-type	-	no_errors	SPTBN2	HGNC	ENSG00000173898	17	0	0.00	11	4	26.67	-	-	-
TM7SF3	0	genome.wustl.edu	37	12	27133509	27133509	+	Nonsense_Mutation	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	12	27133509	27133509	G	C	SNP	TM7SF3	ENST00000545303	human	ensembl	69_37n	-1	putative	nonsense	c.368	p.S123*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TM7SF3	HGNC	ENSG00000064115	210	0	0.00	131	43	24.71	-	-	-
TM7SF3	0	genome.wustl.edu	37	12	27133509	27133509	+	Nonsense_Mutation	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	12	27133509	27133509	G	C	SNP	TM7SF3	ENST00000545303	human	ensembl	69_37n	-1	putative	nonsense	c.368	p.S123*	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TM7SF3	HGNC	ENSG00000064115	189	1	0.53	131	43	24.71	-	-	-
TTC7B	0	genome.wustl.edu	37	14	91252558	91252558	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	14	91252558	91252558	C	T	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.236	p.R79H	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	27	0	0.00	26	12	31.58	-	-	-
TTC7B	0	genome.wustl.edu	37	14	91252558	91252558	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	14	91252558	91252558	C	T	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.236	p.R79H	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	8	0	0.00	26	12	31.58	-	-	-
USH1G	0	genome.wustl.edu	37	17	72916760	72916760	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	17	72916760	72916760	G	C	SNP	USH1G	ENST00000319642	human	ensembl	69_37n	-1	known	missense	c.171	p.D57E	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	USH1G	HGNC	ENSG00000182040	38	0	0.00	55	15	21.43	-	-	-
USH1G	0	genome.wustl.edu	37	17	72916760	72916760	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	17	72916760	72916760	G	C	SNP	USH1G	ENST00000319642	human	ensembl	69_37n	-1	known	missense	c.171	p.D57E	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	USH1G	HGNC	ENSG00000182040	43	0	0.00	55	15	21.43	-	-	-
ZNF208	0	genome.wustl.edu	37	19	22156855	22156855	+	Silent	SNP	G	G	A			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	19	22156855	22156855	G	A	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	silent	c.981	p.T327	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	8	0	0.00	5	7	58.33	-	-	-
ZNF37BP	0	genome.wustl.edu	37	10	43015456	43015456	+	RNA	SNP	G	G	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	6a4cd52f-2247-4caf-9b37-e90b02fd4d8b	10	43015456	43015456	G	T	SNP	ZNF37BP	ENST00000452075	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	ZNF37BP	HGNC	ENSG00000234420	77	0	0.00	52	21	28.77	-	-	-
ZNF37BP	0	genome.wustl.edu	37	10	43015456	43015456	+	RNA	SNP	G	G	T			TCGA-E2-A1BC-01A-11D-A14G-09	TCGA-E2-A1BC-11A-32D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5947a9db-7d13-44ff-86ad-eb5e6c8dcec5	13373e41-3f2b-4d8a-b67b-b83aaa87c293	10	43015456	43015456	G	T	SNP	ZNF37BP	ENST00000452075	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	ZNF37BP	HGNC	ENSG00000234420	89	0	0.00	52	21	28.77	-	-	-
