Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ATM	0	genome.wustl.edu	37	11	108214019	108214019	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	11	108214019	108214019	T	G	SNP	ATM	ENST00000278616	human	ensembl	69_37n	+1	known	missense	c.8339	p.L2780R	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	81	0	0.00	31	37	54.41	-	-	-
CCND3	0	genome.wustl.edu	37	6	41903724	41903724	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	41903724	41903724	G	C	SNP	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	missense	c.833	p.P278R	1.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	58	0	0.00	70	37	34.58	-	-	-
CD59	0	genome.wustl.edu	37	11	33731840	33731840	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	11	33731840	33731840	G	A	SNP	CD59	ENST00000533403	human	ensembl	69_37n	-1	novel	missense	c.341	p.T114M	0.000	NULL	pfam_LY6_UPAR	-	no_errors	CD59	HGNC	ENSG00000085063	110	0	0.00	71	42	36.84	-	-	-
CELP	0	genome.wustl.edu	37	9	135962223	135962223	+	RNA	SNP	C	C	A			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	9	135962223	135962223	C	A	SNP	CELP	ENST00000411440	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.862	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	17	0	0.00	13	5	27.78	-	-	-
CTTNBP2NL	0	genome.wustl.edu	37	1	112998889	112998889	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	1	112998889	112998889	C	T	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	69_37n	+1	known	missense	c.775	p.R259W	1.000	NULL	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079	64	0	0.00	55	31	36.05	-	-	-
DKFZP434H168	0	genome.wustl.edu	37	16	56226639	56226640	+	RNA	DEL	CA	CA	-			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	16	56226639	56226640	CA	-	DEL	DKFZP434H168	ENST00000567381	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.271:0.327	-	-	-	no_errors	CTD-2050B12.2	Clone_based_vega_gene	ENSG00000261439	19	0	0.00	11	3	21.43	-	-	-
DOCK5	0	genome.wustl.edu	37	8	25189823	25189823	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	8	25189823	25189823	C	A	SNP	DOCK5	ENST00000276440	human	ensembl	69_37n	+1	known	missense	c.1960	p.L654I	1.000	superfamily_ARM-type_fold	pfam_DOCK,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459	118	0	0.00	51	70	57.85	-	-	-
EIF3I	0	genome.wustl.edu	37	1	32694376	32694376	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	1	32694376	32694376	C	T	SNP	EIF3I	ENST00000373586	human	ensembl	69_37n	+1	known	missense	c.688	p.R230C	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	63	0	0.00	44	21	32.31	-	-	-
FBXL18	0	genome.wustl.edu	37	7	5545048	5545048	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	7	5545048	5545048	A	C	SNP	FBXL18	ENST00000453700	human	ensembl	69_37n	-1	known	missense	c.232	p.Y78D	1.000	NULL	pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL18	HGNC	ENSG00000155034	40	0	0.00	46	63	57.27	-	-	-
HIST1H3B	0	genome.wustl.edu	37	6	26032045	26032045	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	26032045	26032045	C	T	SNP	HIST1H3B	ENST00000244661	human	ensembl	69_37n	-1	known	missense	c.244	p.D82N	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	61	0	0.00	76	13	14.61	-	-	-
HNF4A	0	genome.wustl.edu	37	20	43052731	43052731	+	Silent	SNP	C	C	T			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	20	43052731	43052731	C	T	SNP	HNF4A	ENST00000316099	human	ensembl	69_37n	+1	known	silent	c.966	p.Y322	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Retinoid-X_rcpt/HNF4	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076	14	0	0.00	10	7	41.18	-	-	-
LOC100996465	0	genome.wustl.edu	37	X	153149667	153149667	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	X	153149667	153149667	G	T	SNP	LOC100996465	ENST00000452593	human	ensembl	69_37n	+1	putative	missense	c.498	p.E166D	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	U52112.12	Clone_based_vega_gene	ENSG00000196987	11	0	0.00	29	13	30.95	-	-	-
MICAL1	0	genome.wustl.edu	37	6	109766645	109766645	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	109766645	109766645	C	T	SNP	MICAL1	ENST00000368952	human	ensembl	69_37n	-1	known	missense	c.2818	p.E940K	0.992	NULL	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596	107	0	0.00	33	47	58.75	-	-	-
MUC16	0	genome.wustl.edu	37	19	9058547	9058547	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	19	9058547	9058547	C	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.28899	p.Q9633H	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	153	0	0.00	143	71	33.18	-	-	-
OR10P1	0	genome.wustl.edu	37	12	56031321	56031321	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	12	56031321	56031321	G	T	SNP	OR10P1	ENST00000309675	human	ensembl	69_37n	+1	known	missense	c.646	p.V216F	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10P1	HGNC	ENSG00000175398	44	0	0.00	31	11	26.19	-	-	-
SIGLEC12	0	genome.wustl.edu	37	19	52004795	52004795	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	19	52004795	52004795	G	A	SNP	SIGLEC12	ENST00000291707	human	ensembl	69_37n	-1	known	missense	c.193	p.R65W	0.004	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC12	HGNC	ENSG00000254521	43	0	0.00	48	36	42.35	-	-	-
TBP	0	genome.wustl.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	170871052	170871052	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.228	p.Q76	0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	10	0	0.00	14	15	50.00	-	-	-
TTN	0	genome.wustl.edu	37	2	179444052	179444052	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	2	179444052	179444052	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.60001	p.R20001W	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	45	0	0.00	39	17	30.36	-	-	-
TTN	0	genome.wustl.edu	37	2	179479294	179479294	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	2	179479294	179479294	A	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.41243	p.V13748A	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	166	0	0.00	95	51	34.93	-	-	-
ZCCHC12	0	genome.wustl.edu	37	X	117960036	117960036	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	X	117960036	117960036	G	A	SNP	ZCCHC12	ENST00000310164	human	ensembl	69_37n	+1	known	missense	c.829	p.V277M	0.999	NULL	superfamily_Znf_CCHC	-	no_errors	ZCCHC12	HGNC	ENSG00000174460	41	0	0.00	36	27	42.86	-	-	-
ZNF175	0	genome.wustl.edu	37	19	52091101	52091101	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	19	52091101	52091101	G	A	SNP	ZNF175	ENST00000262259	human	ensembl	69_37n	+1	known	missense	c.1517	p.S506N	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF175	HGNC	ENSG00000105497	54	0	0.00	37	17	31.48	-	-	-
