Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAM21P1	0	genome.wustl.edu	37	14	70714162	70714162	+	RNA	SNP	A	A	G			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	14	70714162	70714162	A	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	49	0	0.00	90	15	14.29	-	-	-
ADAMTSL3	0	genome.wustl.edu	37	15	84506850	84506850	+	Missense_Mutation	SNP	T	T	A			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	15	84506850	84506850	T	A	SNP	ADAMTSL3	ENST00000286744	human	ensembl	69_37n	+1	known	missense	c.610	p.C204S	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	20	0	0.00	24	10	29.41	-	-	-
ALMS1P	0	genome.wustl.edu	37	2	73912256	73912256	+	RNA	SNP	G	G	A			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	2	73912256	73912256	G	A	SNP	ALMS1P	ENST00000450720	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ALMS1P	HGNC	ENSG00000163016	17	0	0.00	28	7	20.00	-	-	-
CLEC16A	0	genome.wustl.edu	37	16	11154805	11154805	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	11154805	11154805	G	A	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	+1	known	missense	c.2042	p.R681Q	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	49	0	0.00	104	27	20.45	-	-	-
CMIP	0	genome.wustl.edu	37	16	81737574	81737574	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	81737574	81737574	G	T	SNP	CMIP	ENST00000537098	human	ensembl	69_37n	+1	known	missense	c.1975	p.G659C	0.998	NULL	NULL	-	no_errors	CMIP	HGNC	ENSG00000153815	27	0	0.00	31	16	34.04	-	-	-
COLEC11	0	genome.wustl.edu	37	2	3691463	3691463	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	2	3691463	3691463	G	A	SNP	COLEC11	ENST00000418971	human	ensembl	69_37n	+1	known	missense	c.613	p.A205T	0.255	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC11	HGNC	ENSG00000118004	20	0	0.00	36	13	26.53	-	-	-
DGCR14	0	genome.wustl.edu	37	22	19127488	19127488	+	Silent	SNP	G	G	C			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	22	19127488	19127488	G	C	SNP	DGCR14	ENST00000252137	human	ensembl	69_37n	-1	known	silent	c.450	p.V150	0.997	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056	29	0	0.00	48	17	26.15	-	-	-
HSF4	0	genome.wustl.edu	37	16	67201760	67201760	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	67201760	67201760	C	-	DEL	HSF4	ENST00000264009	human	ensembl	69_37n	+1	known	frame_shift_del	c.992	p.I332fs	1.000	NULL	pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF4	HGNC	ENSG00000102878	15	0	0.00	28	9	24.32	-	-	-
IGHM	0	genome.wustl.edu	37	14	106322075	106322075	+	Silent	SNP	G	G	A			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	14	106322075	106322075	G	A	SNP	IGHM	ENST00000390559	human	ensembl	69_37n	-1	known	silent	c.249	p.D83	0.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon	IGHM	HGNC	ENSG00000211899	56	0	0.00	105	13	11.02	-	-	-
MACF1	0	genome.wustl.edu	37	1	39798985	39798985	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	1	39798985	39798985	A	G	SNP	MACF1	ENST00000567887	human	ensembl	69_37n	+1	putative	missense	c.6836	p.E2279G	0.234	superfamily_RNaseH-like_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	36	0	0.00	52	19	26.76	-	-	-
NR2C2	0	genome.wustl.edu	37	3	15094988	15094988	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	3	15094988	15094988	G	C	SNP	NR2C2	ENST00000439011	human	ensembl	69_37n	+1	putative	missense	c.579	p.K193N	0.001	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	-	no_start_codon	NR2C2	HGNC	ENSG00000177463	73	0	0.00	114	32	21.77	-	-	-
PIK3C2G	0	genome.wustl.edu	37	12	18443835	18443835	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	12	18443835	18443835	A	C	SNP	PIK3C2G	ENST00000538779	human	ensembl	69_37n	+1	known	missense	c.808	p.K270Q	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	79	0	0.00	128	30	18.87	-	-	-
PTP4A2	0	genome.wustl.edu	37	1	32384627	32384627	+	Missense_Mutation	SNP	T	T	A			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	1	32384627	32384627	T	A	SNP	PTP4A2	ENST00000344035	human	ensembl	69_37n	-1	known	missense	c.40	p.M14L	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTP4A2	HGNC	ENSG00000184007	95	0	0.00	152	48	24.00	-	-	-
RASGEF1A	0	genome.wustl.edu	37	10	43696327	43696327	+	Missense_Mutation	SNP	T	T	A			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	10	43696327	43696327	T	A	SNP	RASGEF1A	ENST00000395809	human	ensembl	69_37n	-1	known	missense	c.469	p.T157S	1.000	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1A	HGNC	ENSG00000198915	49	0	0.00	70	17	19.54	-	-	-
RPGRIP1L	0	genome.wustl.edu	37	16	53706824	53706824	+	Silent	SNP	T	T	C			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	16	53706824	53706824	T	C	SNP	RPGRIP1L	ENST00000379925	human	ensembl	69_37n	-1	known	silent	c.987	p.K329	0.921	NULL	pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	78	0	0.00	82	21	20.39	-	-	-
SETD2	0	genome.wustl.edu	37	3	47058736	47058737	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	3	47058736	47058737	-	T	INS	SETD2	ENST00000409792	human	ensembl	69_37n	-1	known	frame_shift_ins	c.7542_7541	p.H2514fs	0.914:1.000	pfam_SRI	pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP	-	no_errors	SETD2	HGNC	ENSG00000181555	131	0	0.00	179	20	10.05	-	-	-
SLC9A1	0	genome.wustl.edu	37	1	27427750	27427750	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	1	27427750	27427750	G	T	SNP	SLC9A1	ENST00000263980	human	ensembl	69_37n	-1	known	missense	c.2054	p.T685K	1.000	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	31	0	0.00	31	4	11.43	-	-	-
ZDHHC11	0	genome.wustl.edu	37	5	843815	843815	+	Silent	SNP	C	C	T			TCGA-E2-A1IK-01A-11D-A17G-09	TCGA-E2-A1IK-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	8577ac01-1274-4bd5-ab04-380eaa78d95b	867338db-8269-4f32-b4f2-1c4b9d2566f2	5	843815	843815	C	T	SNP	ZDHHC11	ENST00000283441	human	ensembl	69_37n	-1	known	silent	c.528	p.S176	0.590	pfam_Znf_DHHC_palmitoyltrfase	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818	15	0	0.00	34	12	26.09	-	-	-
