Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKRD20A4	0	genome.wustl.edu	37	9	69390020	69390020	+	Missense_Mutation	SNP	T	T	A			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	9	69390020	69390020	T	A	SNP	ANKRD20A4	ENST00000357336	human	ensembl	69_37n	+1	known	missense	c.574	p.S192T	0.002	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014	27	0	0.00	10	7	41.18	-	-	-
CFHR5	0	genome.wustl.edu	37	1	196973889	196973889	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	1	196973889	196973889	C	T	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	+1	known	missense	c.1501	p.R501C	0.006	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	41	0	0.00	30	9	23.08	-	-	-
FAM135B	0	genome.wustl.edu	37	8	139164616	139164616	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	8	139164616	139164616	C	T	SNP	FAM135B	ENST00000395297	human	ensembl	69_37n	-1	known	missense	c.2102	p.R701Q	0.863	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	23	0	0.00	9	5	35.71	-	-	-
FST	0	genome.wustl.edu	37	5	52781027	52781028	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	5	52781027	52781028	-	T	INS	FST	ENST00000256759	human	ensembl	69_37n	+1	known	frame_shift_ins	c.922_923	p.E309fs	0.993:1.000	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal	pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,pfam_Follistatin/Osteonectin_EGF,superfamily_TB_dom,smart_Fol_N,smart_Prot_inh_Kazal	-	no_errors	FST	HGNC	ENSG00000134363	30	0	0.00	44	7	13.73	-	-	-
IL22RA1	0	genome.wustl.edu	37	1	24465129	24465129	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	1	24465129	24465129	G	A	SNP	IL22RA1	ENST00000270800	human	ensembl	69_37n	-1	known	missense	c.119	p.T40M	0.992	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL22RA1	HGNC	ENSG00000142677	42	0	0.00	32	7	17.95	-	-	-
INTS6	0	genome.wustl.edu	37	13	51950260	51950260	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	13	51950260	51950260	A	T	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.1653	p.N551K	1.000	NULL	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	52	0	0.00	14	12	46.15	-	-	-
MYH1	0	genome.wustl.edu	37	17	10415212	10415212	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	17	10415212	10415212	G	T	SNP	MYH1	ENST00000226207	human	ensembl	69_37n	-1	known	missense	c.1360	p.Q454K	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061	125	0	0.00	61	17	21.79	-	-	-
PCDHB15	0	genome.wustl.edu	37	5	140626431	140626431	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	5	140626431	140626431	C	A	SNP	PCDHB15	ENST00000231173	human	ensembl	69_37n	+1	known	missense	c.1285	p.P429T	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248	50	0	0.00	12	5	29.41	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	45	0	0.00	29	8	21.62	-	-	-
SCGB1D4	0	genome.wustl.edu	37	11	62065069	62065069	+	Silent	SNP	G	G	A			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	11	62065069	62065069	G	A	SNP	SCGB1D4	ENST00000358585	human	ensembl	69_37n	-1	known	silent	c.117	p.D39	0.000	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	pfam_Uteroglobin-like_superfam,superfamily_Secretoglobin	-	no_errors	SCGB1D4	HGNC	ENSG00000197745	50	0	0.00	42	5	10.64	-	-	-
TP53	0	genome.wustl.edu	37	17	7578278	7578279	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	17	7578278	7578279	-	A	INS	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.571_570	p.P190fs	0.997:0.935	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	51	0	0.00	18	6	25.00	-	-	-
TPTE2	0	genome.wustl.edu	37	13	19999927	19999927	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	13	19999927	19999927	T	G	SNP	TPTE2	ENST00000462409	human	ensembl	69_37n	-1	known	missense	c.956	p.Q319P	0.137	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	-	no_errors	TPTE2	HGNC	ENSG00000132958	33	0	0.00	8	5	38.46	-	-	-
U2AF1	0	genome.wustl.edu	37	21	44514780	44514780	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	21	44514780	44514780	C	T	SNP	U2AF1	ENST00000291552	human	ensembl	69_37n	-1	known	missense	c.467	p.R156H	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_U2_small	-	no_errors	U2AF1	HGNC	ENSG00000160201	14	0	0.00	12	5	29.41	-	-	-
ZNF207	0	genome.wustl.edu	37	17	30690005	30690005	+	Splice_Site	SNP	T	T	C			TCGA-E2-A1IO-01A-11D-A142-09	TCGA-E2-A1IO-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	986e9b9f-ae15-4743-a150-d6ee11f3c077	f06efd07-1873-4b4b-b323-9a39e0081241	17	30690005	30690005	T	C	SNP	ZNF207	ENST00000394670	human	ensembl	69_37n	+1	known	splice_site	c.670+2	e7+2	1.000	-	-	-	no_errors	ZNF207	HGNC	ENSG00000010244	37	0	0.00	35	4	10.26	-	-	-
