Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACE	0	genome.wustl.edu	37	17	61562349	61562349	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	17	61562349	61562349	A	G	SNP	ACE	ENST00000490216	human	ensembl	69_37n	+1	known	missense	c.121	p.T41A	0.000	NULL	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	61	0	0.00	94	14	12.84	-	-	-
CCDC80	0	genome.wustl.edu	37	3	112358410	112358410	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	3	112358410	112358410	G	A	SNP	CCDC80	ENST00000206423	human	ensembl	69_37n	-1	known	missense	c.343	p.R115C	0.003	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	42	0	0.00	42	6	12.50	-	-	-
CEP250	0	genome.wustl.edu	37	20	34057761	34057761	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	20	34057761	34057761	G	T	SNP	CEP250	ENST00000397527	human	ensembl	69_37n	+1	known	nonsense	c.898	p.E300*	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	34	0	0.00	63	10	13.51	-	-	-
CHD4	0	genome.wustl.edu	37	12	6697097	6697097	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	12	6697097	6697097	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.3484	p.R1162W	1.000	pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,smart_Helicase_C,pfscan_Helicase_C	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	46	0	0.00	53	11	17.19	-	-	-
CLCA1	0	genome.wustl.edu	37	1	86942163	86942163	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	1	86942163	86942163	C	T	SNP	CLCA1	ENST00000234701	human	ensembl	69_37n	+1	known	nonsense	c.484	p.R162*	0.664	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490	92	0	0.00	108	22	16.92	-	-	-
CNTNAP2	0	genome.wustl.edu	37	7	146536957	146536957	+	Silent	SNP	G	G	T			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	7	146536957	146536957	G	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	69_37n	+1	known	silent	c.363	p.G121	0.950	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EGF-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	39	0	0.00	70	9	11.39	-	-	-
CSRNP3	0	genome.wustl.edu	37	2	166535936	166535936	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	2	166535936	166535936	C	A	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	+1	known	missense	c.1431	p.F477L	0.620	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	33	0	0.00	41	7	14.58	-	-	-
EFCAB5	0	genome.wustl.edu	37	17	28417634	28417634	+	Silent	SNP	G	G	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	17	28417634	28417634	G	A	SNP	EFCAB5	ENST00000394835	human	ensembl	69_37n	+1	known	silent	c.3879	p.V1293	0.353	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	62	0	0.00	98	20	16.95	-	-	-
HEPH	0	genome.wustl.edu	37	X	65420445	65420445	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	X	65420445	65420445	C	T	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	+1	known	missense	c.2090	p.A697V	0.998	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	92	0	0.00	201	52	20.55	-	-	-
KIAA0182	0	genome.wustl.edu	37	16	85701854	85701854	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	16	85701854	85701854	A	G	SNP	KIAA0182	ENST00000253458	human	ensembl	69_37n	+1	known	missense	c.3239	p.N1080S	0.993	NULL	pfam_DUF3736	-	no_errors	KIAA0182	HGNC	ENSG00000131149	71	0	0.00	82	21	20.39	-	-	-
KIF13B	0	genome.wustl.edu	37	8	28989832	28989832	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	8	28989832	28989832	G	A	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	missense	c.2935	p.R979W	0.998	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	62	0	0.00	83	12	12.63	-	-	-
KRAS	0	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	12	25398284	25398284	C	A	SNP	KRAS	ENST00000256078	human	ensembl	69_37n	-1	known	missense	c.35	p.G12V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703	76	0	0.00	139	24	14.72	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	96	0	0.00	88	16	15.38	-	-	-
RNA5SP284	0	genome.wustl.edu	37	9	68409027	68409028	+	RNA	INS	-	-	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	9	68409027	68409028	-	A	INS	RNA5SP284	ENST00000384547	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.105:0.101	-	-	-	no_errors	RNA5SP284	HGNC	ENSG00000207277	11	0	0.00	4	3	42.86	-	-	-
RNA5SP284	0	genome.wustl.edu	37	9	68409033	68409033	+	RNA	DEL	C	C	-			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	9	68409033	68409033	C	-	DEL	RNA5SP284	ENST00000384547	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.066	-	-	-	no_errors	RNA5SP284	HGNC	ENSG00000207277	10	0	0.00	3	3	50.00	-	-	-
SETD1B	0	genome.wustl.edu	37	12	122242717	122242717	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	12	122242717	122242717	G	A	SNP	SETD1B	ENST00000267197	human	ensembl	69_37n	+1	known	missense	c.74	p.R25K	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1B	HGNC	ENSG00000139718	40	0	0.00	22	8	26.67	-	-	-
SLC19A1	0	genome.wustl.edu	37	21	46951916	46951918	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	21	46951916	46951918	CAG	-	DEL	SLC19A1	ENST00000311124	human	ensembl	69_37n	-1	known	in_frame_del	c.336_334	p.L112in_frame_del	0.002:0.005:0.002	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638	10	0	0.00	6	3	33.33	-	-	-
SLC44A3	0	genome.wustl.edu	37	1	95311008	95311008	+	Silent	SNP	C	C	T			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	1	95311008	95311008	C	T	SNP	SLC44A3	ENST00000271227	human	ensembl	69_37n	+1	known	silent	c.1060	p.L354	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A3	HGNC	ENSG00000143036	59	0	0.00	98	24	19.51	-	-	-
SPTA1	0	genome.wustl.edu	37	1	158584095	158584095	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	1	158584095	158584095	C	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.6790	p.D2264Y	0.995	NULL	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	43	0	0.00	46	9	16.36	-	-	-
USP24	0	genome.wustl.edu	37	1	55637338	55637338	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A1NG-01A-21D-A14K-09	TCGA-E9-A1NG-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1cbf389d-1ec8-4543-880f-4ef64c55a44b	238a0594-90ba-45e5-9936-7a24e49f65cf	1	55637338	55637338	T	C	SNP	USP24	ENST00000294383	human	ensembl	69_37n	-1	known	missense	c.716	p.D239G	1.000	NULL	pfam_Peptidase_C19,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19	-	no_errors	USP24	HGNC	ENSG00000162402	47	0	0.00	61	11	15.28	-	-	-
