Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BAGE2	0	genome.wustl.edu	37	21	11060198	11060198	+	RNA	SNP	G	G	A			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	21	11060198	11060198	G	A	SNP	BAGE2	ENST00000474011	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172	10	0	0.00	9	6	40.00	-	-	-
CDH1	0	genome.wustl.edu	37	16	68847282	68847282	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	16	68847282	68847282	G	C	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	missense	c.1204	p.D402H	0.974	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	65	0	0.00	40	6	13.04	-	-	-
HTATSF1	0	genome.wustl.edu	37	X	135593757	135593757	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	X	135593757	135593757	G	C	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	+1	known	missense	c.1853	p.R618T	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	33	0	0.00	40	5	11.11	-	-	-
KIAA1429	0	genome.wustl.edu	37	8	95538749	95538749	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	8	95538749	95538749	C	G	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.1723	p.E575Q	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	63	0	0.00	52	6	10.34	-	-	-
LRRN3	0	genome.wustl.edu	37	7	110763866	110763866	+	Silent	SNP	C	C	T			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	7	110763866	110763866	C	T	SNP	LRRN3	ENST00000308478	human	ensembl	69_37n	+1	known	silent	c.1038	p.L346	0.066	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	LRRN3	HGNC	ENSG00000173114	50	0	0.00	35	4	10.26	-	-	-
SLFN14	0	genome.wustl.edu	37	17	33879870	33879870	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	17	33879870	33879870	G	C	SNP	SLFN14	ENST00000415846	human	ensembl	69_37n	-1	known	missense	c.1783	p.P595A	1.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN14	HGNC	ENSG00000236320	56	0	0.00	52	6	10.34	-	-	-
TRIM49C	0	genome.wustl.edu	37	11	89774397	89774397	+	Silent	SNP	T	T	C			TCGA-E9-A2JT-01A-22D-A18P-09	TCGA-E9-A2JT-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4a0f9f07-6b43-4b77-864a-e3c744d4d835	ef077907-6ca1-4a35-a819-15aeb2ddf7da	11	89774397	89774397	T	C	SNP	TRIM49C	ENST00000448984	human	ensembl	69_37n	+1	known	silent	c.1038	p.H346	0.074	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49C	HGNC	ENSG00000204449	14	0	0.00	18	10	35.71	-	-	-
