Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAM29	0	genome.wustl.edu	37	4	175897897	175897899	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	4	175897897	175897899	AGG	-	DEL	ADAM29	ENST00000359240	human	ensembl	69_37n	+1	known	in_frame_del	c.1221_1223	p.G408in_frame_del	0.000:0.000:0.000	pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	92	0	0.00	36	7	16.28	-	-	-
ADAM33	0	genome.wustl.edu	37	20	3649431	3649431	+	RNA	SNP	A	A	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	20	3649431	3649431	A	G	SNP	ADAM33	ENST00000466620	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ADAM33	HGNC	ENSG00000149451	117	0	0.00	29	4	12.12	-	-	-
ANKRD20A5P	0	genome.wustl.edu	37	18	14187501	14187501	+	RNA	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	18	14187501	14187501	C	T	SNP	ANKRD20A5P	ENST00000581181	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.064	-	-	-	no_errors	ANKRD20A5P	HGNC	ENSG00000186481	8	0	0.00	6	4	40.00	-	-	-
AP3D1	0	genome.wustl.edu	37	19	2120922	2120922	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	19	2120922	2120922	G	-	DEL	AP3D1	ENST00000355272	human	ensembl	69_37n	-1	known	frame_shift_del	c.1420	p.Q474fs	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	60	0	0.00	15	2	11.76	-	-	-
ARMC9	0	genome.wustl.edu	37	2	232070952	232070952	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	232070952	232070952	A	G	SNP	ARMC9	ENST00000349938	human	ensembl	69_37n	+1	known	missense	c.1	p.M1V	0.992	NULL	superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	ARMC9	HGNC	ENSG00000135931	69	0	0.00	20	4	16.67	-	-	-
ASXL1	0	genome.wustl.edu	37	20	31023332	31023332	+	Silent	SNP	A	A	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	20	31023332	31023332	A	G	SNP	ASXL1	ENST00000375687	human	ensembl	69_37n	+1	known	silent	c.2817	p.A939	0.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456	51	0	0.00	12	11	47.83	-	-	-
C11orf92	0	genome.wustl.edu	37	11	111169268	111169268	+	RNA	SNP	T	T	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	111169268	111169268	T	A	SNP	C11orf92	ENST00000526150	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	C11orf92	HGNC	ENSG00000196167	91	0	0.00	28	12	30.00	-	-	-
C1orf87	0	genome.wustl.edu	37	1	60474375	60474375	+	Silent	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	60474375	60474375	C	T	SNP	C1orf87	ENST00000395552	human	ensembl	69_37n	-1	known	silent	c.39	p.T13	0.000	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598	59	0	0.00	20	3	13.04	-	-	-
C2orf15	0	genome.wustl.edu	37	2	99939031	99939031	+	RNA	SNP	A	A	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	99939031	99939031	A	G	SNP	C2orf15	ENST00000465095	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C2orf15	HGNC	ENSG00000241962	47	0	0.00	20	3	13.04	-	-	-
CACNA1F	0	genome.wustl.edu	37	X	49071881	49071881	+	Missense_Mutation	SNP	A	A	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	X	49071881	49071881	A	T	SNP	CACNA1F	ENST00000376265	human	ensembl	69_37n	-1	known	missense	c.3392	p.I1131N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001	100	0	0.00	18	7	28.00	-	-	-
CAMK2B	0	genome.wustl.edu	37	7	44284564	44284564	+	Silent	SNP	A	A	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	7	44284564	44284564	A	G	SNP	CAMK2B	ENST00000421607	human	ensembl	69_37n	-1	novel	silent	c.465	p.H155	0.000	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_stop_codon:bad_bp_length_for_coding_region	CAMK2B	HGNC	ENSG00000058404	72	0	0.00	32	4	11.11	-	-	-
CEACAMP10	0	genome.wustl.edu	37	19	43724248	43724248	+	RNA	SNP	C	C	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	19	43724248	43724248	C	G	SNP	CEACAMP10	ENST00000489959	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CEACAMP10	HGNC	ENSG00000241104	58	0	0.00	25	4	13.79	-	-	-
CNTNAP3	0	genome.wustl.edu	37	9	39287976	39287976	+	Splice_Site	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	9	39287976	39287976	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	splice_site	c.85+1	e1+1	0.729	-	-	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	80	0	0.00	25	4	13.79	-	-	-
CR1L	0	genome.wustl.edu	37	1	207884105	207884105	+	RNA	SNP	C	C	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	207884105	207884105	C	A	SNP	CR1L	ENST00000530905	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.051	-	-	-	no_errors	CR1L	HGNC	ENSG00000197721	112	1	0.88	45	10	18.18	-	-	-
CR1L	0	genome.wustl.edu	37	1	207884107	207884107	+	RNA	SNP	G	G	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	207884107	207884107	G	A	SNP	CR1L	ENST00000530905	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CR1L	HGNC	ENSG00000197721	109	1	0.91	44	9	16.98	-	-	-
CROCC	0	genome.wustl.edu	37	1	17264939	17264939	+	Silent	SNP	T	T	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	17264939	17264939	T	C	SNP	CROCC	ENST00000375541	human	ensembl	69_37n	+1	known	silent	c.1335	p.D445	0.001	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453	150	1	0.66	82	10	10.87	-	-	-
CXADRP3	0	genome.wustl.edu	37	18	14478229	14478229	+	RNA	SNP	T	T	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	18	14478229	14478229	T	C	SNP	CXADRP3	ENST00000581457	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766	74	0	0.00	37	6	13.95	-	-	-
CXorf24	0	genome.wustl.edu	37	X	47343254	47343254	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	X	47343254	47343254	C	T	SNP	CXorf24	ENST00000357412	human	ensembl	69_37n	+1	known	missense	c.251	p.T84I	0.002	NULL	NULL	-	no_errors	CXorf24	HGNC	ENSG00000196741	106	0	0.00	36	4	10.00	-	-	-
DDHD2	0	genome.wustl.edu	37	8	38111111	38111111	+	Missense_Mutation	SNP	A	A	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	8	38111111	38111111	A	C	SNP	DDHD2	ENST00000397166	human	ensembl	69_37n	+1	known	missense	c.1929	p.E643D	0.465	pfam_DDHD,pfscan_DDHD	pfam_DDHD,pfam_WWE-dom,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD,pfscan_WWE-dom	-	no_errors	DDHD2	HGNC	ENSG00000085788	144	0	0.00	47	16	25.40	-	-	-
DOK3	0	genome.wustl.edu	37	5	176936654	176936654	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	5	176936654	176936654	G	C	SNP	DOK3	ENST00000357198	human	ensembl	69_37n	-1	known	missense	c.56	p.S19C	0.996	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK3	HGNC	ENSG00000146094	78	0	0.00	17	11	39.29	-	-	-
EBLN2	0	genome.wustl.edu	37	3	73111481	73111482	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	3	73111481	73111482	-	A	INS	EBLN2	ENST00000533473	human	ensembl	69_37n	+1	known	frame_shift_ins	c.249_250	p.R83fs	0.006:0.006	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	-	no_errors	EBLN2	HGNC	ENSG00000255423	45	0	0.00	23	3	11.54	-	-	-
ECRP	0	genome.wustl.edu	37	14	21388266	21388266	+	RNA	SNP	G	G	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	14	21388266	21388266	G	C	SNP	ECRP	ENST00000258817	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.867	-	-	-	no_errors	RP11-84C10.2	Clone_based_vega_gene	ENSG00000136315	118	0	0.00	50	8	13.79	-	-	-
EIF1	0	genome.wustl.edu	37	17	39847716	39847716	+	RNA	SNP	A	A	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	39847716	39847716	A	G	SNP	EIF1	ENST00000310837	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EIF1	HGNC	ENSG00000173812	53	0	0.00	15	6	28.57	-	-	-
ELF1	0	genome.wustl.edu	37	13	41515071	41515071	+	Silent	SNP	G	G	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	13	41515071	41515071	G	C	SNP	ELF1	ENST00000239882	human	ensembl	69_37n	-1	known	silent	c.1242	p.S414	0.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ELF1	HGNC	ENSG00000120690	149	0	0.00	47	28	37.33	-	-	-
FAM75A6	0	genome.wustl.edu	37	9	43626820	43626820	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	9	43626820	43626820	G	C	SNP	FAM75A6	ENST00000332857	human	ensembl	69_37n	-1	known	missense	c.1867	p.R623G	0.003	NULL	NULL	-	no_errors	FAM75A6	HGNC	ENSG00000185775	33	0	0.00	12	8	40.00	-	-	-
FOXK2	0	genome.wustl.edu	37	17	80545148	80545148	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	80545148	80545148	G	-	DEL	FOXK2	ENST00000335255	human	ensembl	69_37n	+1	known	frame_shift_del	c.1786	p.A596fs	0.980	NULL	pfam_TF_fork_head,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_TF_fork_head,prints_TF_fork_head,pfscan_FHA_dom,pfscan_TF_fork_head	-	no_errors	FOXK2	HGNC	ENSG00000141568	32	0	0.00	9	2	18.18	-	-	-
GAST	0	genome.wustl.edu	37	17	39871711	39871711	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	39871711	39871711	T	C	SNP	GAST	ENST00000329402	human	ensembl	69_37n	+1	known	missense	c.23	p.V8A	0.001	pfam_Gastrin	pfam_Gastrin,smart_Gastrin	-	no_errors	GAST	HGNC	ENSG00000184502	75	0	0.00	27	14	34.15	-	-	-
GKAP1	0	genome.wustl.edu	37	9	86354511	86354511	+	RNA	SNP	G	G	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	9	86354511	86354511	G	C	SNP	GKAP1	ENST00000376362	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GKAP1	HGNC	ENSG00000165113	86	0	0.00	27	4	12.90	-	-	-
GVINP1	0	genome.wustl.edu	37	11	6738952	6738952	+	RNA	SNP	G	G	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	6738952	6738952	G	T	SNP	GVINP1	ENST00000526769	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GVINP1	HGNC	ENSG00000254838	33	0	0.00	20	4	16.67	-	-	-
HIP1	0	genome.wustl.edu	37	7	75221831	75221831	+	Silent	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	7	75221831	75221831	C	T	SNP	HIP1	ENST00000336926	human	ensembl	69_37n	-1	known	silent	c.186	p.T62	0.048	pfam_ANTH,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH,pfam_ILWEQ,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ,pfscan_Epsin-like_N,pfscan_ILWEQ	-	no_errors	HIP1	HGNC	ENSG00000127946	40	0	0.00	18	8	30.77	-	-	-
IQCG	0	genome.wustl.edu	37	3	197639381	197639381	+	RNA	SNP	A	A	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	3	197639381	197639381	A	G	SNP	IQCG	ENST00000469822	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.104	-	-	-	no_errors	IQCG	HGNC	ENSG00000114473	33	0	0.00	16	6	27.27	-	-	-
ITGB6	0	genome.wustl.edu	37	2	160958145	160958145	+	RNA	SNP	T	T	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	160958145	160958145	T	C	SNP	ITGB6	ENST00000475438	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	ITGB6	HGNC	ENSG00000115221	35	0	0.00	13	3	18.75	-	-	-
KBTBD4	0	genome.wustl.edu	37	11	47597215	47597215	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	47597215	47597215	A	G	SNP	KBTBD4	ENST00000430070	human	ensembl	69_37n	-1	known	missense	c.674	p.I225T	1.000	pfam_BACK,smart_BACK	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	KBTBD4	HGNC	ENSG00000123444	43	0	0.00	22	8	26.67	-	-	-
KPTN	0	genome.wustl.edu	37	19	47979891	47979891	+	Silent	SNP	C	C	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	19	47979891	47979891	C	A	SNP	KPTN	ENST00000338134	human	ensembl	69_37n	-1	known	silent	c.1080	p.R360	0.934	NULL	NULL	-	no_errors	KPTN	HGNC	ENSG00000118162	72	0	0.00	17	7	29.17	-	-	-
KRT17P2	0	genome.wustl.edu	37	17	18333915	18333915	+	RNA	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	18333915	18333915	C	T	SNP	KRT17P2	ENST00000326333	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KRT17P2	HGNC	ENSG00000186831	77	0	0.00	35	4	10.26	-	-	-
KRT42P	0	genome.wustl.edu	37	17	39785011	39785011	+	RNA	DEL	G	G	-			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	39785011	39785011	G	-	DEL	KRT42P	ENST00000438131	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KRT42P	HGNC	ENSG00000214514	132	0	0.00	47	18	26.87	-	-	-
LPHN2	0	genome.wustl.edu	37	1	82432213	82432213	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	82432213	82432213	G	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	+1	known	missense	c.2257	p.V753I	1.000	pfam_DUF3497	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	49	0	0.00	24	9	27.27	-	-	-
MAP4K1	0	genome.wustl.edu	37	19	39104522	39104522	+	Nonsense_Mutation	SNP	G	G	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	19	39104522	39104522	G	C	SNP	MAP4K1	ENST00000591517	human	ensembl	69_37n	-1	known	nonsense	c.531	p.Y177*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP4K1	HGNC	ENSG00000104814	55	0	0.00	9	4	30.77	-	-	-
MATN1-AS1	0	genome.wustl.edu	37	1	31192304	31192304	+	RNA	SNP	G	G	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	31192304	31192304	G	T	SNP	MATN1-AS1	ENST00000414532	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MATN1-AS1	HGNC	ENSG00000186056	125	1	0.79	43	7	14.00	-	-	-
MDN1	0	genome.wustl.edu	37	6	90385864	90385864	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	6	90385864	90385864	G	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.12602	p.A4201V	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	36	0	0.00	22	4	15.38	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1271321	1271321	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	1271321	1271321	C	G	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.13220	p.A4407G	0.042	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	130	0	0.00	39	7	15.22	-	-	-
NAGA	0	genome.wustl.edu	37	22	42428727	42428727	+	Missense_Mutation	SNP	A	A	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	22	42428727	42428727	A	T	SNP	NAGA	ENST00000481068	human	ensembl	69_37n	-1	putative	missense	c.631	p.S211T	0.033	NULL	superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_27	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NAGA	HGNC	ENSG00000198951	36	0	0.00	14	4	22.22	-	-	-
NBPF12	0	genome.wustl.edu	37	1	146420082	146420082	+	Missense_Mutation	SNP	T	T	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	146420082	146420082	T	G	SNP	NBPF12	ENST00000446760	human	ensembl	69_37n	+1	known	missense	c.1836	p.C612W	0.000	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF12	HGNC	ENSG00000186275	79	0	0.00	26	3	10.34	-	-	-
NCOA6	0	genome.wustl.edu	37	20	33337587	33337587	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	20	33337587	33337587	G	-	DEL	NCOA6	ENST00000359003	human	ensembl	69_37n	-1	known	frame_shift_del	c.2411	p.P804fs	1.000	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	77	0	0.00	36	5	12.20	-	-	-
NCSTN	0	genome.wustl.edu	37	1	160326465	160326465	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	160326465	160326465	C	T	SNP	NCSTN	ENST00000435149	human	ensembl	69_37n	+1	known	nonsense	c.745	p.Q249*	1.000	NULL	pfam_Nicastrin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NCSTN	HGNC	ENSG00000162736	166	0	0.00	90	30	25.00	-	-	-
NFAT5	0	genome.wustl.edu	37	16	69687152	69687152	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	16	69687152	69687152	C	G	SNP	NFAT5	ENST00000432919	human	ensembl	69_37n	+1	known	missense	c.826	p.Q276E	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,pfscan_RHD,prints_NFAT	-	no_errors	NFAT5	HGNC	ENSG00000102908	54	0	0.00	14	14	50.00	-	-	-
OR6C68	0	genome.wustl.edu	37	12	55886699	55886699	+	Silent	SNP	T	T	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	12	55886699	55886699	T	C	SNP	OR6C68	ENST00000379662	human	ensembl	69_37n	+1	known	silent	c.553	p.L185	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C68	HGNC	ENSG00000205327	80	0	0.00	30	11	26.83	-	-	-
PAQR3	0	genome.wustl.edu	37	4	79838944	79838944	+	RNA	SNP	G	G	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	4	79838944	79838944	G	A	SNP	PAQR3	ENST00000503343	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PAQR3	HGNC	ENSG00000163291	22	0	0.00	8	4	33.33	-	-	-
PDE10A	0	genome.wustl.edu	37	6	165801900	165801900	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	6	165801900	165801900	G	A	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	missense	c.1699	p.H567Y	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	70	0	0.00	23	9	28.12	-	-	-
PEX5L	0	genome.wustl.edu	37	3	179597794	179597794	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	3	179597794	179597794	C	A	SNP	PEX5L	ENST00000467460	human	ensembl	69_37n	-1	known	missense	c.428	p.G143V	0.997	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	89	0	0.00	33	20	37.74	-	-	-
PHF8	0	genome.wustl.edu	37	X	54020225	54020225	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	X	54020225	54020225	T	C	SNP	PHF8	ENST00000357988	human	ensembl	69_37n	-1	known	missense	c.1543	p.M515V	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF8	HGNC	ENSG00000172943	130	0	0.00	53	7	11.67	-	-	-
PILRB	0	genome.wustl.edu	37	7	99950006	99950006	+	RNA	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	7	99950006	99950006	C	T	SNP	PILRB	ENST00000470714	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PILRB	HGNC	ENSG00000121716	87	0	0.00	32	4	11.11	-	-	-
POP1	0	genome.wustl.edu	37	8	99146855	99146855	+	Silent	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	8	99146855	99146855	C	T	SNP	POP1	ENST00000349693	human	ensembl	69_37n	+1	known	silent	c.979	p.L327	0.906	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	99	0	0.00	28	16	35.56	-	-	-
PPM1A	0	genome.wustl.edu	37	14	60749615	60749615	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	14	60749615	60749615	C	G	SNP	PPM1A	ENST00000325642	human	ensembl	69_37n	+1	known	missense	c.413	p.S138C	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,pfam_PP2C_C,superfamily_PP2C-like,superfamily_PP2C_C,smart_PP2C-like	-	no_errors	PPM1A	HGNC	ENSG00000100614	244	0	0.00	105	33	23.91	-	-	-
PTPRJ	0	genome.wustl.edu	37	11	48142578	48142578	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	48142578	48142578	A	-	DEL	PTPRJ	ENST00000418331	human	ensembl	69_37n	+1	known	frame_shift_del	c.376	p.A127fs	0.545	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRJ	HGNC	ENSG00000149177	30	0	0.00	8	2	20.00	-	-	-
PYGO1	0	genome.wustl.edu	37	15	55839191	55839191	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	15	55839191	55839191	C	T	SNP	PYGO1	ENST00000302000	human	ensembl	69_37n	-1	known	missense	c.290	p.G97D	0.999	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO1	HGNC	ENSG00000171016	56	0	0.00	19	4	17.39	-	-	-
RBP3	0	genome.wustl.edu	37	10	48382254	48382254	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	10	48382254	48382254	C	A	SNP	RBP3	ENST00000224600	human	ensembl	69_37n	-1	known	missense	c.3395	p.R1132L	1.000	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	41	0	0.00	14	4	22.22	-	-	-
REXO1	0	genome.wustl.edu	37	19	1827021	1827023	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	19	1827021	1827023	GGA	-	DEL	REXO1	ENST00000170168	human	ensembl	69_37n	-1	known	in_frame_del	c.1767_1765	p.S589in_frame_del	0.247:0.228:0.208	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313	25	0	0.00	14	3	17.65	-	-	-
RYR2	0	genome.wustl.edu	37	1	237993724	237993724	+	RNA	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	237993724	237993724	C	T	SNP	RYR2	ENST00000462585	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RYR2	HGNC	ENSG00000198626	120	0	0.00	59	10	14.49	-	-	-
SDR16C6P	0	genome.wustl.edu	37	8	57294501	57294501	+	RNA	SNP	T	T	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	8	57294501	57294501	T	C	SNP	SDR16C6P	ENST00000517787	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SDR16C6P	HGNC	ENSG00000253542	47	0	0.00	33	5	13.16	-	-	-
SIRPB2	0	genome.wustl.edu	37	20	1456906	1456906	+	Missense_Mutation	SNP	G	G	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	20	1456906	1456906	G	T	SNP	SIRPB2	ENST00000359801	human	ensembl	69_37n	-1	known	missense	c.935	p.A312D	0.221	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIRPB2	HGNC	ENSG00000196209	52	0	0.00	23	12	34.29	-	-	-
SLC6A10P	0	genome.wustl.edu	37	16	32890616	32890616	+	RNA	SNP	G	G	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	16	32890616	32890616	G	C	SNP	SLC6A10P	ENST00000330048	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617	99	0	0.00	27	7	20.59	-	-	-
SPINT3	0	genome.wustl.edu	37	20	44141331	44141331	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	20	44141331	44141331	A	G	SNP	SPINT3	ENST00000217428	human	ensembl	69_37n	-1	known	missense	c.230	p.L77S	0.000	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m	-	no_errors	SPINT3	HGNC	ENSG00000101446	91	0	0.00	43	5	10.42	-	-	-
SSH2	0	genome.wustl.edu	37	17	27993928	27993928	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	17	27993928	27993928	C	T	SNP	SSH2	ENST00000269033	human	ensembl	69_37n	-1	known	missense	c.908	p.G303D	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298	85	0	0.00	32	8	20.00	-	-	-
TPTE2P6	0	genome.wustl.edu	37	13	25144717	25144717	+	RNA	SNP	C	C	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	13	25144717	25144717	C	A	SNP	TPTE2P6	ENST00000453498	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.958	-	-	-	no_errors	TPTE2P6	HGNC	ENSG00000205822	108	0	0.00	32	5	13.51	-	-	-
TPTEP1	0	genome.wustl.edu	37	22	17178601	17178601	+	RNA	SNP	G	G	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	22	17178601	17178601	G	A	SNP	TPTEP1	ENST00000558085	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.543	-	-	-	no_errors	TPTEP1	HGNC	ENSG00000100181	69	0	0.00	35	5	12.50	-	-	-
TRAPPC3	0	genome.wustl.edu	37	1	36614713	36614713	+	RNA	SNP	C	C	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	36614713	36614713	C	G	SNP	TRAPPC3	ENST00000497251	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TRAPPC3	HGNC	ENSG00000054116	77	0	0.00	19	4	17.39	-	-	-
TRIM66	0	genome.wustl.edu	37	11	8693405	8693405	+	RNA	SNP	G	G	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	11	8693405	8693405	G	A	SNP	TRIM66	ENST00000531498	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TRIM66	HGNC	ENSG00000166436	68	0	0.00	33	7	17.50	-	-	-
UGGT1	0	genome.wustl.edu	37	2	128939819	128939819	+	Nonsense_Mutation	SNP	C	C	G			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	128939819	128939819	C	G	SNP	UGGT1	ENST00000259253	human	ensembl	69_37n	+1	known	nonsense	c.4199	p.S1400*	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	85	0	0.00	39	15	27.78	-	-	-
UHMK1	0	genome.wustl.edu	37	1	162493009	162493009	+	RNA	SNP	C	C	T			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	1	162493009	162493009	C	T	SNP	UHMK1	ENST00000282169	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.340	-	-	-	no_errors	UHMK1	HGNC	ENSG00000152332	91	0	0.00	42	6	12.50	-	-	-
ULBP2	0	genome.wustl.edu	37	6	150267527	150267527	+	Silent	SNP	A	A	C			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	6	150267527	150267527	A	C	SNP	ULBP2	ENST00000367351	human	ensembl	69_37n	+1	known	silent	c.369	p.A123	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	ULBP2	HGNC	ENSG00000131015	137	1	0.72	51	7	12.07	-	-	-
USP34	0	genome.wustl.edu	37	2	61622358	61622359	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	2	61622358	61622359	GT	-	DEL	USP34	ENST00000398571	human	ensembl	69_37n	-1	known	frame_shift_del	c.563_562	p.T188fs	1.000:1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP34	HGNC	ENSG00000115464	87	0	0.00	38	11	21.57	-	-	-
WBP11P1	0	genome.wustl.edu	37	18	30092327	30092327	+	RNA	SNP	G	G	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	18	30092327	30092327	G	A	SNP	WBP11P1	ENST00000567636	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389	27	0	0.00	13	5	27.78	-	-	-
ZNF292	0	genome.wustl.edu	37	6	87865299	87865299	+	RNA	SNP	G	G	A			TCGA-E9-A3Q9-01A-11D-A21Q-09	TCGA-E9-A3Q9-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d053c0fd-c2fe-4f49-a333-da17c45d75c9	b1cc02ca-7fca-4132-9a9b-a14a9056bf37	6	87865299	87865299	G	A	SNP	ZNF292	ENST00000369578	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF292	HGNC	ENSG00000188994	100	0	0.00	29	13	30.95	-	-	-
