Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACCSL	0	genome.wustl.edu	37	11	44081434	44081434	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	11	44081434	44081434	G	C	SNP	ACCSL	ENST00000378832	human	ensembl	69_37n	+1	known	missense	c.1671	p.L557F	0.000	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,prints_ACC_synthase	-	no_errors	ACCSL	HGNC	ENSG00000205126	119	0	0.00	298	75	20.11	-	-	-
ANAPC1	0	genome.wustl.edu	37	2	112619981	112619981	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	2	112619981	112619981	G	A	SNP	ANAPC1	ENST00000341068	human	ensembl	69_37n	-1	known	missense	c.1247	p.T416M	0.027	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107	19	0	0.00	58	12	17.14	-	-	-
ANKRD30BL	0	genome.wustl.edu	37	2	133015302	133015302	+	RNA	SNP	T	T	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	2	133015302	133015302	T	G	SNP	ANKRD30BL	ENST00000470729	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	15	0	0.00	29	21	42.00	-	-	-
ANKRD36C	0	genome.wustl.edu	37	2	96657310	96657311	+	Frame_Shift_Ins	INS	-	-	TTCA			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	2	96657310	96657311	-	TTCA	INS	ANKRD36C	ENST00000456556	human	ensembl	69_37n	-1	known	frame_shift_ins	c.147_146	p.K49fs	0.005:0.002	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36C	HGNC	ENSG00000174501	34	0	0.00	123	19	13.38	-	-	-
APC	0	genome.wustl.edu	37	5	112164629	112164629	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	5	112164629	112164629	G	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	+1	known	missense	c.1703	p.S568N	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	126	0	0.00	53	63	54.31	-	-	-
ATG4A	0	genome.wustl.edu	37	X	107396925	107396925	+	Nonsense_Mutation	SNP	G	G	T			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	X	107396925	107396925	G	T	SNP	ATG4A	ENST00000372232	human	ensembl	69_37n	+1	known	nonsense	c.1180	p.E394*	1.000	NULL	pfam_Peptidase_C54	-	no_errors	ATG4A	HGNC	ENSG00000101844	149	0	0.00	75	64	46.04	-	-	-
ATXN7L3	0	genome.wustl.edu	37	17	42274624	42274624	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	17	42274624	42274624	G	A	SNP	ATXN7L3	ENST00000454077	human	ensembl	69_37n	-1	known	missense	c.328	p.R110W	0.998	NULL	pfam_SAGA_su_Sgf11,pfam_SCA7_dom	-	no_errors	ATXN7L3	HGNC	ENSG00000087152	42	0	0.00	15	17	53.12	-	-	-
BCL6	0	genome.wustl.edu	37	3	187444543	187444543	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	3	187444543	187444543	C	T	SNP	BCL6	ENST00000232014	human	ensembl	69_37n	-1	known	missense	c.1684	p.A562T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	BCL6	HGNC	ENSG00000113916	89	0	0.00	53	27	27.27	-	-	-
BRWD1	0	genome.wustl.edu	37	21	40600483	40600484	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	21	40600483	40600484	CA	-	DEL	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	frame_shift_del	c.3151_3150	p.D1051fs	1.000:1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	23	0	0.00	18	10	35.71	-	-	-
CASP7	0	genome.wustl.edu	37	10	115486182	115486182	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	10	115486182	115486182	C	T	SNP	CASP7	ENST00000369321	human	ensembl	69_37n	+1	known	missense	c.770	p.S257F	1.000	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP7	HGNC	ENSG00000165806	59	0	0.00	20	16	44.44	-	-	-
CD9	0	genome.wustl.edu	37	12	6342590	6342590	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	12	6342590	6342590	C	A	SNP	CD9	ENST00000009180	human	ensembl	69_37n	+1	known	missense	c.286	p.L96I	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278	102	0	0.00	100	122	54.95	-	-	-
CELSR3	0	genome.wustl.edu	37	3	48677877	48677877	+	Nonsense_Mutation	SNP	G	G	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	3	48677877	48677877	G	C	SNP	CELSR3	ENST00000544264	human	ensembl	69_37n	-1	known	nonsense	c.9156	p.Y3052*	0.968	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EGF-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300	15	0	0.00	6	6	50.00	-	-	-
CHD6	0	genome.wustl.edu	37	20	40049505	40049505	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	20	40049505	40049505	G	A	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.5770	p.P1924S	0.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	114	0	0.00	40	67	62.62	-	-	-
COG3	0	genome.wustl.edu	37	13	46070345	46070345	+	Silent	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	13	46070345	46070345	G	A	SNP	COG3	ENST00000349995	human	ensembl	69_37n	+1	known	silent	c.1386	p.E462	1.000	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152	71	0	0.00	22	33	60.00	-	-	-
CRIPAK	0	genome.wustl.edu	37	4	1388693	1388693	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	4	1388693	1388693	C	G	SNP	CRIPAK	ENST00000324803	human	ensembl	69_37n	+1	known	missense	c.394	p.H132D	0.000	NULL	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	8	0	0.00	53	44	45.36	-	-	-
DHRS1	0	genome.wustl.edu	37	14	24760122	24760122	+	Silent	SNP	C	C	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	14	24760122	24760122	C	G	SNP	DHRS1	ENST00000288111	human	ensembl	69_37n	-1	known	silent	c.885	p.L295	0.972	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH	-	no_errors	DHRS1	HGNC	ENSG00000157379	61	0	0.00	40	25	38.46	-	-	-
GOLGA8DP	0	genome.wustl.edu	37	15	22706758	22706758	+	RNA	SNP	T	T	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	15	22706758	22706758	T	A	SNP	GOLGA8DP	ENST00000314246	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.928	-	-	-	no_errors	GOLGA8DP	HGNC	ENSG00000185182	29	0	0.00	43	6	12.24	-	-	-
HECTD1	0	genome.wustl.edu	37	14	31582337	31582337	+	Nonsense_Mutation	SNP	A	A	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	14	31582337	31582337	A	C	SNP	HECTD1	ENST00000554882	human	ensembl	69_37n	-1	novel	nonsense	c.1220	p.L407*	1.000	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HECTD1	HGNC	ENSG00000092148	116	0	0.00	81	82	50.31	-	-	-
HSP90AB1	0	genome.wustl.edu	37	6	44218045	44218045	+	Silent	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	6	44218045	44218045	G	A	SNP	HSP90AB1	ENST00000353801	human	ensembl	69_37n	+1	known	silent	c.666	p.E222	1.000	pfam_Hsp90,superfamily_ATPase-like_ATP-bd,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	56	0	0.00	66	39	37.14	-	-	-
IGKV4-1	0	genome.wustl.edu	37	2	89185360	89185360	+	Silent	SNP	C	C	T			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	2	89185360	89185360	C	T	SNP	IGKV4-1	ENST00000390243	human	ensembl	69_37n	+1	known	silent	c.54	p.A18	0.261	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGKV4-1	HGNC	ENSG00000211598	69	0	0.00	58	37	38.54	-	-	-
ITPR2	0	genome.wustl.edu	37	12	26640139	26640139	+	Missense_Mutation	SNP	A	A	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	12	26640139	26640139	A	C	SNP	ITPR2	ENST00000381340	human	ensembl	69_37n	-1	known	missense	c.5416	p.F1806V	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104	99	0	0.00	153	67	30.45	-	-	-
KLHL12	0	genome.wustl.edu	37	1	202862535	202862535	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	1	202862535	202862535	A	G	SNP	KLHL12	ENST00000435533	human	ensembl	69_37n	-1	known	missense	c.1526	p.L509P	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL12	HGNC	ENSG00000117153	81	0	0.00	81	47	36.72	-	-	-
KRTAP4-11	0	genome.wustl.edu	37	17	39274161	39274161	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	17	39274161	39274161	T	C	SNP	KRTAP4-11	ENST00000391413	human	ensembl	69_37n	-1	known	missense	c.407	p.H136R	0.002	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721	19	0	0.00	19	29	59.18	-	-	-
KRTAP5-5	0	genome.wustl.edu	37	11	1651229	1651229	+	Silent	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	11	1651229	1651229	G	A	SNP	KRTAP5-5	ENST00000399676	human	ensembl	69_37n	+1	known	silent	c.159	p.A53	0.325	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940	12	0	0.00	45	20	30.77	-	-	-
LRCH4	0	genome.wustl.edu	37	7	100180051	100180051	+	Silent	SNP	G	G	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	7	100180051	100180051	G	C	SNP	LRCH4	ENST00000310300	human	ensembl	69_37n	-1	known	silent	c.252	p.P84	0.005	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454	40	0	0.00	23	35	60.34	-	-	-
LRRC32	0	genome.wustl.edu	37	11	76371884	76371884	+	Silent	SNP	C	C	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	11	76371884	76371884	C	G	SNP	LRRC32	ENST00000260061	human	ensembl	69_37n	-1	known	silent	c.753	p.R251	0.990	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	42	0	0.00	39	11	22.00	-	-	-
MAGEC2	0	genome.wustl.edu	37	X	141291033	141291033	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	X	141291033	141291033	C	G	SNP	MAGEC2	ENST00000247452	human	ensembl	69_37n	-1	known	missense	c.741	p.E247D	0.004	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774	69	0	0.00	43	58	57.43	-	-	-
MAMLD1	0	genome.wustl.edu	37	X	149639325	149639327	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	X	149639325	149639327	CAG	-	DEL	MAMLD1	ENST00000432680	human	ensembl	69_37n	+1	known	in_frame_del	c.1405_1407	p.Q472in_frame_del	0.006:0.000:0.000	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619	50	0	0.00	30	4	11.76	-	-	-
MTF1	0	genome.wustl.edu	37	1	38323086	38323086	+	Missense_Mutation	SNP	T	T	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	1	38323086	38323086	T	A	SNP	MTF1	ENST00000373036	human	ensembl	69_37n	-1	known	missense	c.245	p.H82L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786	125	0	0.00	153	52	25.37	-	-	-
NOTCH2	0	genome.wustl.edu	37	1	120458147	120458147	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	1	120458147	120458147	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	nonsense	c.7198	p.R2400*	1.000	pirsf_Notch,pfam_DUF3454_notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	66	0	0.00	41	20	32.79	-	-	-
OR10G4	0	genome.wustl.edu	37	11	123886542	123886542	+	Silent	SNP	C	C	T			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	11	123886542	123886542	C	T	SNP	OR10G4	ENST00000320891	human	ensembl	69_37n	+1	known	silent	c.261	p.S87	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10G4	HGNC	ENSG00000254737	99	1	1.00	51	18	26.09	-	-	-
PCNXL2	0	genome.wustl.edu	37	1	233394715	233394715	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	1	233394715	233394715	C	G	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.893	p.R298P	0.001	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	38	0	0.00	71	17	19.32	-	-	-
PDILT	0	genome.wustl.edu	37	16	20387485	20387485	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	16	20387485	20387485	G	A	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	nonsense	c.448	p.R150*	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	68	0	0.00	50	23	31.08	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037842	10037842	+	RNA	SNP	A	A	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	Y	10037842	10037842	A	G	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	18	0	0.00	34	10	22.73	-	-	-
RNF19A	0	genome.wustl.edu	37	8	101271360	101271360	+	Silent	SNP	G	G	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	8	101271360	101271360	G	C	SNP	RNF19A	ENST00000341084	human	ensembl	69_37n	-1	known	silent	c.1941	p.G647	0.003	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF19A	HGNC	ENSG00000034677	95	0	0.00	96	40	29.41	-	-	-
SGCD	0	genome.wustl.edu	37	5	156022038	156022038	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	5	156022038	156022038	G	T	SNP	SGCD	ENST00000337851	human	ensembl	69_37n	+1	known	missense	c.479	p.G160V	1.000	pfam_Sarcoglycan	pfam_Sarcoglycan	-	no_errors	SGCD	HGNC	ENSG00000170624	70	0	0.00	41	30	42.25	-	-	-
SLC9A4	0	genome.wustl.edu	37	2	103141572	103141572	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	2	103141572	103141572	G	C	SNP	SLC9A4	ENST00000295269	human	ensembl	69_37n	+1	known	missense	c.1908	p.R636S	0.906	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251	85	0	0.00	64	94	59.49	-	-	-
SOGA2	0	genome.wustl.edu	37	18	8784556	8784556	+	Silent	SNP	G	G	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	18	8784556	8784556	G	C	SNP	SOGA2	ENST00000359865	human	ensembl	69_37n	+1	known	silent	c.1446	p.A482	0.241	NULL	pfam_DUF3166	-	no_errors	SOGA2	HGNC	ENSG00000168502	13	0	0.00	11	10	45.45	-	-	-
SYDE1	0	genome.wustl.edu	37	19	15223187	15223187	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	19	15223187	15223187	C	T	SNP	SYDE1	ENST00000342784	human	ensembl	69_37n	+1	known	missense	c.1609	p.R537C	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137	24	0	0.00	35	17	32.69	-	-	-
SYDE1	0	genome.wustl.edu	37	19	15223341	15223341	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	19	15223341	15223341	A	G	SNP	SYDE1	ENST00000342784	human	ensembl	69_37n	+1	known	missense	c.1763	p.H588R	0.998	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	SYDE1	HGNC	ENSG00000105137	12	0	0.00	19	21	52.50	-	-	-
TMEM150A	0	genome.wustl.edu	37	2	85827041	85827041	+	Silent	SNP	C	C	G			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	2	85827041	85827041	C	G	SNP	TMEM150A	ENST00000334462	human	ensembl	69_37n	-1	known	silent	c.369	p.A123	0.001	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150A	HGNC	ENSG00000168890	56	0	0.00	50	43	45.74	-	-	-
TOM1	0	genome.wustl.edu	37	22	35734720	35734720	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	22	35734720	35734720	C	T	SNP	TOM1	ENST00000411850	human	ensembl	69_37n	+1	known	missense	c.1163	p.A388V	1.000	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284	31	0	0.00	12	18	60.00	-	-	-
TUBBP5	0	genome.wustl.edu	37	9	141069885	141069885	+	RNA	SNP	A	A	C			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	9	141069885	141069885	A	C	SNP	TUBBP5	ENST00000290377	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	12	0	0.00	18	6	25.00	-	-	-
UFL1	0	genome.wustl.edu	37	6	96971168	96971168	+	Splice_Site	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	6	96971168	96971168	G	A	SNP	UFL1	ENST00000369278	human	ensembl	69_37n	+1	known	splice_site	c.223+1	e2+1	1.000	-	-	-	no_errors	UFL1	HGNC	ENSG00000014123	58	0	0.00	76	37	32.74	-	-	-
ZNF12	0	genome.wustl.edu	37	7	6731888	6731888	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	7	6731888	6731888	C	T	SNP	ZNF12	ENST00000405858	human	ensembl	69_37n	-1	known	missense	c.685	p.D229N	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631	52	0	0.00	61	28	31.46	-	-	-
ZNFX1	0	genome.wustl.edu	37	20	47886966	47886966	+	Silent	SNP	G	G	A			TCGA-EW-A1P8-01A-11D-A142-09	TCGA-EW-A1P8-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e55f338f-97e2-4394-ae23-c92606069485	45c5228f-0317-4c73-a84a-257abfbb5ae8	20	47886966	47886966	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	silent	c.1383	p.F461	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	73	0	0.00	21	24	53.33	-	-	-
