Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCC1	0	genome.wustl.edu	37	16	16139859	16139859	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	16	16139859	16139859	G	T	SNP	ABCC1	ENST00000399408	human	ensembl	69_37n	+1	known	missense	c.1207	p.V403F	0.974	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222	92	0	0.00	79	24	23.30	-	-	-
APC	0	genome.wustl.edu	37	5	112179735	112179735	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	5	112179735	112179735	A	G	SNP	APC	ENST00000257430	human	ensembl	69_37n	+1	known	missense	c.8444	p.K2815R	1.000	pfam_EB1-bd	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	52	0	0.00	44	6	12.00	-	-	-
CELP	0	genome.wustl.edu	37	9	135962474	135962475	+	RNA	INS	-	-	T			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	9	135962474	135962475	-	T	INS	CELP	ENST00000411440	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	12	0	0.00	4	2	33.33	-	-	-
FAM172A	0	genome.wustl.edu	37	5	93217183	93217183	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	5	93217183	93217183	T	C	SNP	FAM172A	ENST00000395965	human	ensembl	69_37n	-1	known	missense	c.779	p.Y260C	0.998	NULL	pfam_Arb2_domain	-	no_errors	FAM172A	HGNC	ENSG00000113391	174	0	0.00	107	34	24.11	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40408834	40408834	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	19	40408834	40408834	G	T	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.4005	p.D1335E	0.014	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	33	0	0.00	31	4	11.43	-	-	-
FTMT	0	genome.wustl.edu	37	5	121188158	121188158	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	5	121188158	121188158	A	G	SNP	FTMT	ENST00000321339	human	ensembl	69_37n	+1	known	missense	c.500	p.E167G	1.000	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867	12	0	0.00	19	5	20.83	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115928	8115929	+	Frame_Shift_Ins	INS	-	-	A			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	10	8115928	8115929	-	A	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1277_1278	p.S427fs	0.981:0.204	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	68	0	0.00	49	26	34.67	-	-	-
HRNR	0	genome.wustl.edu	37	1	152190761	152190761	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	1	152190761	152190761	T	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.3344	p.Y1115F	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	46	0	0.00	42	18	30.00	-	-	-
KIAA2022	0	genome.wustl.edu	37	X	73962855	73962855	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	X	73962855	73962855	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.1537	p.V513I	0.789	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	128	0	0.00	100	55	35.48	-	-	-
LCT	0	genome.wustl.edu	37	2	136567501	136567501	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	2	136567501	136567501	C	T	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	missense	c.2416	p.E806K	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	47	0	0.00	37	21	36.21	-	-	-
LRRTM2	0	genome.wustl.edu	37	5	138209483	138209483	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	5	138209483	138209483	T	C	SNP	LRRTM2	ENST00000274711	human	ensembl	69_37n	-1	known	missense	c.767	p.E256G	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM2	HGNC	ENSG00000146006	74	0	0.00	59	29	32.95	-	-	-
MDGA1	0	genome.wustl.edu	37	6	37623624	37623624	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	6	37623624	37623624	C	T	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.431	p.R144Q	0.975	smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	30	0	0.00	26	18	40.91	-	-	-
NOC2L	0	genome.wustl.edu	37	1	892292	892292	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	1	892292	892292	T	A	SNP	NOC2L	ENST00000327044	human	ensembl	69_37n	-1	known	missense	c.468	p.R156S	0.064	NULL	pfam_UPF0120,superfamily_ARM-type_fold	-	no_errors	NOC2L	HGNC	ENSG00000188976	95	0	0.00	76	32	29.63	-	-	-
NTRK3	0	genome.wustl.edu	37	15	88420205	88420205	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	15	88420205	88420205	C	A	SNP	NTRK3	ENST00000360948	human	ensembl	69_37n	-1	known	missense	c.2481	p.L827F	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538	45	0	0.00	52	17	24.64	-	-	-
OBSCN	0	genome.wustl.edu	37	1	228494729	228494729	+	Silent	SNP	C	C	A			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	1	228494729	228494729	C	A	SNP	OBSCN	ENST00000422127	human	ensembl	69_37n	+1	known	silent	c.12054	p.L4018	0.406	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	23	0	0.00	26	10	27.78	-	-	-
RBM20	0	genome.wustl.edu	37	10	112544591	112544591	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	10	112544591	112544591	G	A	SNP	RBM20	ENST00000369519	human	ensembl	69_37n	+1	known	missense	c.1471	p.A491T	1.000	NULL	smart_Znf_U1,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	RBM20	HGNC	ENSG00000203867	104	0	0.00	65	40	38.10	-	-	-
RIF1	0	genome.wustl.edu	37	2	152276813	152276813	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	2	152276813	152276813	A	G	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	+1	known	missense	c.613	p.T205A	0.987	pfam_Rif1_N,superfamily_ARM-type_fold	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	82	0	0.00	53	29	35.37	-	-	-
TCF20	0	genome.wustl.edu	37	22	42609486	42609486	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	22	42609486	42609486	G	C	SNP	TCF20	ENST00000359486	human	ensembl	69_37n	-1	known	missense	c.1826	p.S609C	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207	23	0	0.00	20	9	31.03	-	-	-
UNC13C	0	genome.wustl.edu	37	15	54847664	54847664	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	15	54847664	54847664	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	69_37n	+1	known	missense	c.5912	p.T1971M	0.995	pfam_Munc13_subgr_dom-2	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_Ca-dep,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766	62	0	0.00	38	19	33.33	-	-	-
ZNF479	0	genome.wustl.edu	37	7	57187569	57187569	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A2DM-01A-11D-A17W-09	TCGA-GM-A2DM-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d3185219-142d-415d-bb9d-16aa14b183dc	fa7da8f4-5dd2-46fd-97d1-5f43b1c34fc5	7	57187569	57187569	T	C	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	missense	c.1553	p.E518G	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	81	0	0.00	58	46	44.23	-	-	-
