Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BCR	0	genome.wustl.edu	37	22	23523318	23523318	+	Silent	SNP	C	C	T			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	22	23523318	23523318	C	T	SNP	BCR	ENST00000305877	human	ensembl	69_37n	+1	known	silent	c.171	p.I57	1.000	pfam_Bcr-Abl_oncoprot_oligo,superfamily_Bcr-Abl_oncoprot_oligo	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_Ca-dep,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RhoGAP_dom,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716	28	0	0.00	32	14	30.43	-	-	-
CCDC27	0	genome.wustl.edu	37	1	3679228	3679228	+	Silent	SNP	C	C	G			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	1	3679228	3679228	C	G	SNP	CCDC27	ENST00000294600	human	ensembl	69_37n	+1	known	silent	c.906	p.L302	0.010	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	63	0	0.00	49	26	34.21	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862076	68862076	+	Splice_Site	SNP	G	G	A			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	16	68862076	68862076	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	splice_site	c.2165-1	e14-1	1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	131	0	0.00	83	49	37.12	-	-	-
COL9A1	0	genome.wustl.edu	37	6	70926628	70926628	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	6	70926628	70926628	C	T	SNP	COL9A1	ENST00000357250	human	ensembl	69_37n	-1	known	missense	c.2738	p.R913Q	0.993	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280	25	0	0.00	41	13	24.07	-	-	-
FAM182B	0	genome.wustl.edu	37	20	25840531	25840531	+	RNA	SNP	A	A	G			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	20	25840531	25840531	A	G	SNP	FAM182B	ENST00000584356	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	FAM182B	HGNC	ENSG00000175170	50	0	0.00	56	8	12.31	-	-	-
FLNA	0	genome.wustl.edu	37	X	153582335	153582335	+	Missense_Mutation	SNP	T	T	A			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	X	153582335	153582335	T	A	SNP	FLNA	ENST00000438732	human	ensembl	69_37n	-1	novel	missense	c.482	p.E161V	0.094	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	-	no_start_codon:pseudogene:no_stop_codon	FLNA	HGNC	ENSG00000196924	77	0	0.00	91	35	27.78	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29614296	29614297	+	RNA	INS	-	-	AGA			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	20	29614296	29614297	-	AGA	INS	FRG1B	ENST00000482423	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.998:0.997	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531	27	0	0.00	37	6	13.95	-	-	-
FXR2	0	genome.wustl.edu	37	17	7507083	7507083	+	Silent	SNP	C	C	T			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	17	7507083	7507083	C	T	SNP	FXR2	ENST00000250113	human	ensembl	69_37n	-1	known	silent	c.441	p.L147	0.995	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	50	0	0.00	73	9	10.98	-	-	-
GPR133	0	genome.wustl.edu	37	12	131616324	131616324	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	12	131616324	131616324	G	A	SNP	GPR133	ENST00000261654	human	ensembl	69_37n	+1	known	missense	c.2230	p.D744N	0.998	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452	79	0	0.00	48	35	42.17	-	-	-
IBTK	0	genome.wustl.edu	37	6	82936959	82936959	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	6	82936959	82936959	C	G	SNP	IBTK	ENST00000306270	human	ensembl	69_37n	-1	known	missense	c.604	p.G202R	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700	45	0	0.00	38	19	33.33	-	-	-
ID3	0	genome.wustl.edu	37	1	23884532	23884532	+	RNA	SNP	A	A	G			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	1	23884532	23884532	A	G	SNP	ID3	ENST00000463312	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ID3	HGNC	ENSG00000117318	48	0	0.00	49	12	19.67	-	-	-
IGLV5-45	0	genome.wustl.edu	37	22	22730821	22730821	+	Nonsense_Mutation	SNP	C	C	T			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	22	22730821	22730821	C	T	SNP	IGLV5-45	ENST00000390296	human	ensembl	69_37n	+1	known	nonsense	c.316	p.Q106*	0.237	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGLV5-45	HGNC	ENSG00000211650	47	0	0.00	81	9	10.00	-	-	-
LHX1	0	genome.wustl.edu	37	17	35298024	35298024	+	Missense_Mutation	SNP	A	A	T			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	17	35298024	35298024	A	T	SNP	LHX1	ENST00000254457	human	ensembl	69_37n	+1	known	missense	c.515	p.D172V	1.000	superfamily_Homeodomain-like	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX1	HGNC	ENSG00000132130	50	0	0.00	43	21	32.81	-	-	-
LILRA6	0	genome.wustl.edu	37	19	54745497	54745497	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	19	54745497	54745497	G	A	SNP	LILRA6	ENST00000270464	human	ensembl	69_37n	-1	known	missense	c.613	p.R205W	0.022	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRA6	HGNC	ENSG00000244482	26	0	0.00	34	5	12.82	-	-	-
LPIN1	0	genome.wustl.edu	37	2	11922610	11922610	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	2	11922610	11922610	C	T	SNP	LPIN1	ENST00000449576	human	ensembl	69_37n	+1	known	missense	c.1388	p.T463M	0.924	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324	19	0	0.00	18	8	30.77	-	-	-
MKNK2	0	genome.wustl.edu	37	19	2042015	2042015	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	19	2042015	2042015	T	C	SNP	MKNK2	ENST00000250896	human	ensembl	69_37n	-1	known	missense	c.769	p.M257V	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MKNK2	HGNC	ENSG00000099875	14	0	0.00	11	5	31.25	-	-	-
NBN	0	genome.wustl.edu	37	8	90965699	90965699	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	8	90965699	90965699	G	A	SNP	NBN	ENST00000265433	human	ensembl	69_37n	-1	known	missense	c.1618	p.H540Y	0.000	pirsf_Nibrin_met	pfam_DNA-repair_Nbs1_C,pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_BRCT_dom,smart_FHA_dom,pirsf_Nibrin_met,pfscan_FHA_dom	-	no_errors	NBN	HGNC	ENSG00000104320	53	0	0.00	64	33	34.02	-	-	-
PACSIN3	0	genome.wustl.edu	37	11	47200771	47200771	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	11	47200771	47200771	T	C	SNP	PACSIN3	ENST00000298838	human	ensembl	69_37n	-1	known	missense	c.839	p.D280G	1.000	NULL	pfam_FCH,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,prints_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	PACSIN3	HGNC	ENSG00000165912	39	0	0.00	29	10	25.64	-	-	-
PCDHB13	0	genome.wustl.edu	37	5	140594909	140594909	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	5	140594909	140594909	C	T	SNP	PCDHB13	ENST00000341948	human	ensembl	69_37n	+1	known	missense	c.1214	p.T405M	0.034	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372	61	0	0.00	76	11	12.64	-	-	-
PLA2G4D	0	genome.wustl.edu	37	15	42361019	42361019	+	Missense_Mutation	SNP	A	A	G			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	15	42361019	42361019	A	G	SNP	PLA2G4D	ENST00000290472	human	ensembl	69_37n	-1	known	missense	c.2351	p.L784P	0.951	superfamily_Acyl_Trfase/lysoPLipase,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4D	HGNC	ENSG00000159337	47	0	0.00	40	22	35.48	-	-	-
PTEN	0	genome.wustl.edu	37	10	89692792	89692792	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	10	89692792	89692792	C	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	missense	c.276	p.D92E	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	43	0	0.00	42	26	38.24	-	-	-
ROCK1	0	genome.wustl.edu	37	18	18546962	18546962	+	Silent	SNP	A	A	G			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	18	18546962	18546962	A	G	SNP	ROCK1	ENST00000399799	human	ensembl	69_37n	-1	known	silent	c.3268	p.L1090	0.943	pirsf_Rho-assoc_coiled-coil_kinase	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900	25	0	0.00	31	13	29.55	-	-	-
SEC23IP	0	genome.wustl.edu	37	10	121685689	121685689	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	10	121685689	121685689	G	T	SNP	SEC23IP	ENST00000369075	human	ensembl	69_37n	+1	known	missense	c.2263	p.V755L	0.522	NULL	pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD	-	no_errors	SEC23IP	HGNC	ENSG00000107651	47	0	0.00	61	21	25.61	-	-	-
SOX6	0	genome.wustl.edu	37	11	16068116	16068116	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	11	16068116	16068116	C	T	SNP	SOX6	ENST00000352083	human	ensembl	69_37n	-1	known	missense	c.1567	p.D523N	1.000	NULL	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX6	HGNC	ENSG00000110693	49	0	0.00	59	21	26.25	-	-	-
VAPB	0	genome.wustl.edu	37	20	57020778	57020778	+	RNA	SNP	A	A	G			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	20	57020778	57020778	A	G	SNP	VAPB	ENST00000265619	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	VAPB	HGNC	ENSG00000124164	8	0	0.00	12	7	36.84	-	-	-
ZNF498	0	genome.wustl.edu	37	7	99227520	99227520	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A5PV-01A-11D-A28B-09	TCGA-GM-A5PV-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c57857aa-d6e1-49a2-9dac-582b21271cb2	d5e127a9-672f-4833-94ec-63393bcc0079	7	99227520	99227520	C	G	SNP	ZNF498	ENST00000334715	human	ensembl	69_37n	+1	known	missense	c.1512	p.H504Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF498	HGNC	ENSG00000197037	87	0	0.00	67	35	34.31	-	-	-
