Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABHD16B	0	genome.wustl.edu	37	20	62494080	62494080	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	20	62494080	62494080	C	T	SNP	ABHD16B	ENST00000369916	human	ensembl	69_37n	+1	known	missense	c.1187	p.A396V	0.024	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16B	HGNC	ENSG00000183260	41	0	0.00	18	11	37.93	-	-	-
ANKIB1	0	genome.wustl.edu	37	7	92027881	92027881	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	7	92027881	92027881	C	G	SNP	ANKIB1	ENST00000265742	human	ensembl	69_37n	+1	known	missense	c.2888	p.P963R	1.000	NULL	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629	57	0	0.00	16	15	48.39	-	-	-
AP1G1	0	genome.wustl.edu	37	16	71773187	71773187	+	Missense_Mutation	SNP	A	A	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	71773187	71773187	A	T	SNP	AP1G1	ENST00000433195	human	ensembl	69_37n	-1	known	missense	c.2126	p.F709Y	1.000	pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G1	HGNC	ENSG00000166747	22	0	0.00	15	7	31.82	-	-	-
AP1M1	0	genome.wustl.edu	37	19	16338376	16338376	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	16338376	16338376	G	A	SNP	AP1M1	ENST00000444449	human	ensembl	69_37n	+1	known	missense	c.727	p.V243M	0.999	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP1M1	HGNC	ENSG00000072958	34	0	0.00	19	4	17.39	-	-	-
ARAP3	0	genome.wustl.edu	37	5	141041664	141041664	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	5	141041664	141041664	G	T	SNP	ARAP3	ENST00000239440	human	ensembl	69_37n	-1	known	missense	c.2959	p.L987I	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_ArfGAP,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	59	0	0.00	19	4	17.39	-	-	-
ARF1	0	genome.wustl.edu	37	1	228285577	228285577	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	228285577	228285577	G	A	SNP	ARF1	ENST00000272102	human	ensembl	69_37n	+1	known	missense	c.409	p.A137T	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_MIRO-like,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARF1	HGNC	ENSG00000143761	36	0	0.00	43	9	17.31	-	-	-
ASH1L	0	genome.wustl.edu	37	1	155311817	155311817	+	Nonsense_Mutation	SNP	G	G	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	155311817	155311817	G	C	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	nonsense	c.8385	p.Y2795*	1.000	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	53	0	0.00	83	13	13.54	-	-	-
ATOH8	0	genome.wustl.edu	37	2	86015022	86015022	+	RNA	SNP	G	G	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	86015022	86015022	G	C	SNP	ATOH8	ENST00000469442	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ATOH8	HGNC	ENSG00000168874	54	0	0.00	25	16	39.02	-	-	-
BCORL1	0	genome.wustl.edu	37	X	129189956	129189956	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	X	129189956	129189956	G	T	SNP	BCORL1	ENST00000303743	human	ensembl	69_37n	+1	known	missense	c.5203	p.A1735S	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	54	0	0.00	36	4	10.00	-	-	-
BRCA1	0	genome.wustl.edu	37	17	41256900	41256900	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	17	41256900	41256900	C	G	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.286	p.D96H	1.000	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	19	0	0.00	4	4	50.00	-	-	-
C5orf38	0	genome.wustl.edu	37	5	2755276	2755276	+	Missense_Mutation	SNP	G	G	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	5	2755276	2755276	G	C	SNP	C5orf38	ENST00000397835	human	ensembl	69_37n	+1	putative	missense	c.467	p.R156T	0.001	NULL	NULL	-	no_errors	C5orf38	HGNC	ENSG00000186493	8	0	0.00	9	4	30.77	-	-	-
CACNA1B	0	genome.wustl.edu	37	9	140878699	140878699	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	140878699	140878699	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	69_37n	+1	known	missense	c.1769	p.T590M	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	68	0	0.00	17	17	50.00	-	-	-
CAPRIN1	0	genome.wustl.edu	37	11	34093309	34093309	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	11	34093309	34093309	G	A	SNP	CAPRIN1	ENST00000341394	human	ensembl	69_37n	+1	known	missense	c.253	p.G85R	1.000	NULL	pfam_Caprin-1_C	-	no_errors	CAPRIN1	HGNC	ENSG00000135387	118	0	0.00	135	23	14.56	-	-	-
CD36	0	genome.wustl.edu	37	7	80300444	80300444	+	Missense_Mutation	SNP	T	T	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	7	80300444	80300444	T	A	SNP	CD36	ENST00000309881	human	ensembl	69_37n	+1	known	missense	c.970	p.S324T	0.000	pfam_CD36,prints_CD36	pfam_CD36,prints_CD36_antigen,prints_CD36	-	no_errors	CD36	HGNC	ENSG00000135218	23	0	0.00	11	7	38.89	-	-	-
CHD6	0	genome.wustl.edu	37	20	40033821	40033821	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	20	40033821	40033821	C	G	SNP	CHD6	ENST00000373233	human	ensembl	69_37n	-1	known	missense	c.7560	p.M2520I	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	55	0	0.00	13	8	38.10	-	-	-
CNDP1	0	genome.wustl.edu	37	18	72245477	72245477	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	18	72245477	72245477	C	T	SNP	CNDP1	ENST00000358821	human	ensembl	69_37n	+1	known	missense	c.1082	p.T361I	0.001	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP1	HGNC	ENSG00000150656	55	0	0.00	22	4	15.38	-	-	-
COX7A2L	0	genome.wustl.edu	37	2	42578323	42578323	+	RNA	SNP	T	T	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	42578323	42578323	T	C	SNP	COX7A2L	ENST00000482463	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	COX7A2L	HGNC	ENSG00000115944	38	0	0.00	36	6	14.29	-	-	-
CPT1B	0	genome.wustl.edu	37	22	51012017	51012017	+	Silent	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	22	51012017	51012017	C	T	SNP	CPT1B	ENST00000312108	human	ensembl	69_37n	-1	known	silent	c.1098	p.R366	0.998	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1B	HGNC	ENSG00000205560	66	0	0.00	21	19	47.50	-	-	-
CRB1	0	genome.wustl.edu	37	1	197446852	197446852	+	Missense_Mutation	SNP	T	T	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	197446852	197446852	T	G	SNP	CRB1	ENST00000367400	human	ensembl	69_37n	+1	known	missense	c.4064	p.L1355W	0.932	NULL	pfam_EGF-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	25	0	0.00	13	11	45.83	-	-	-
DCLK1	0	genome.wustl.edu	37	13	36686248	36686248	+	Silent	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	13	36686248	36686248	G	T	SNP	DCLK1	ENST00000360631	human	ensembl	69_37n	-1	known	silent	c.481	p.R161	1.000	superfamily_Doublecortin_dom	pfam_Prot_kinase_cat_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083	42	0	0.00	15	3	16.67	-	-	-
DNAH1	0	genome.wustl.edu	37	3	52407038	52407038	+	Missense_Mutation	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	52407038	52407038	C	A	SNP	DNAH1	ENST00000420323	human	ensembl	69_37n	+1	known	missense	c.6954	p.D2318E	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA	-	no_errors	DNAH1	HGNC	ENSG00000114841	38	0	0.00	32	9	21.95	-	-	-
EGFEM1P	0	genome.wustl.edu	37	3	168538980	168538980	+	Splice_Site	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	168538980	168538980	G	T	SNP	EGFEM1P	ENST00000382864	human	ensembl	69_37n	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	EGFEM1P	HGNC	ENSG00000206120	54	0	0	39	18	31.58	-	-	-
EGFEM1P	0	genome.wustl.edu	37	3	168538980	168538980	+	Splice_Site	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	168538980	168538980	G	T	SNP	EGFEM1P	ENST00000382864	human	ensembl	69_37n	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	EGFEM1P	HGNC	ENSG00000206120	54	0	0.00	39	18	31.58	-	-	-
EYS	0	genome.wustl.edu	37	6	66012732	66012732	+	RNA	SNP	T	T	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	6	66012732	66012732	T	C	SNP	EYS	ENST00000370615	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.951	-	-	-	no_errors	EYS	HGNC	ENSG00000188107	30	0	0.00	17	3	15.00	-	-	-
F5	0	genome.wustl.edu	37	1	169484771	169484771	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	169484771	169484771	C	T	SNP	F5	ENST00000367796	human	ensembl	69_37n	-1	known	missense	c.6454	p.E2152K	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	62	0	0.00	21	56	72.73	-	-	-
FAM78A	0	genome.wustl.edu	37	9	134151294	134151294	+	Silent	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	134151294	134151294	G	A	SNP	FAM78A	ENST00000372271	human	ensembl	69_37n	-1	known	silent	c.273	p.I91	0.349	NULL	NULL	-	no_errors	FAM78A	HGNC	ENSG00000126882	42	0	0.00	27	7	20.59	-	-	-
FBXW12	0	genome.wustl.edu	37	3	48419899	48419899	+	Silent	SNP	G	G	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	48419899	48419899	G	C	SNP	FBXW12	ENST00000296438	human	ensembl	69_37n	+1	known	silent	c.498	p.R166	0.000	superfamily_Quino_amine_DH_bsu	pfam_F-box_dom_cyclin-like,superfamily_Quino_amine_DH_bsu,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXW12	HGNC	ENSG00000164049	39	0	0.00	17	6	26.09	-	-	-
FCRL3	0	genome.wustl.edu	37	1	157669486	157669486	+	Silent	SNP	T	T	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	157669486	157669486	T	C	SNP	FCRL3	ENST00000368186	human	ensembl	69_37n	-1	known	silent	c.48	p.Q16	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL3	HGNC	ENSG00000160856	30	0	0.00	38	5	11.63	-	-	-
FUBP3	0	genome.wustl.edu	37	9	133470877	133470877	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	133470877	133470877	C	G	SNP	FUBP3	ENST00000319725	human	ensembl	69_37n	+1	known	missense	c.92	p.A31G	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FUBP3	HGNC	ENSG00000107164	42	0	0.00	18	7	28.00	-	-	-
GAB3	0	genome.wustl.edu	37	X	153906338	153906338	+	RNA	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	X	153906338	153906338	G	A	SNP	GAB3	ENST00000496390	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GAB3	HGNC	ENSG00000160219	17	0	0.00	11	3	21.43	-	-	-
GCFC1	0	genome.wustl.edu	37	21	34132196	34132196	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	21	34132196	34132196	G	A	SNP	GCFC1	ENST00000331923	human	ensembl	69_37n	-1	known	missense	c.1085	p.S362L	1.000	NULL	pfam_GCFC_dom	-	no_errors	GCFC1	HGNC	ENSG00000159086	36	0	0.00	43	10	18.52	-	-	-
GEMIN4	0	genome.wustl.edu	37	17	649773	649773	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	17	649773	649773	G	A	SNP	GEMIN4	ENST00000319004	human	ensembl	69_37n	-1	known	missense	c.1510	p.R504C	0.046	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409	47	0	0.00	14	16	53.33	-	-	-
GLIS3	0	genome.wustl.edu	37	9	4299661	4299661	+	RNA	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	4299661	4299661	C	A	SNP	GLIS3	ENST00000490709	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.651	-	-	-	no_errors	GLIS3	HGNC	ENSG00000107249	16	0	0.00	5	5	50.00	-	-	-
GPR144	0	genome.wustl.edu	37	9	127215772	127215772	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	127215772	127215772	C	G	SNP	GPR144	ENST00000334810	human	ensembl	69_37n	+1	known	missense	c.796	p.H266D	0.836	pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,prints_Pentaxin	pfam_GPCR_2_secretin-like,pfam_Pentaxin,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_C-type_lectin_fold,smart_Pentaxin,smart_GPS_dom,prints_Pentaxin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR144	HGNC	ENSG00000180264	9	0	0.00	0	4	100.00	-	-	-
GRIN2A	0	genome.wustl.edu	37	16	9892166	9892166	+	Missense_Mutation	SNP	A	A	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	9892166	9892166	A	G	SNP	GRIN2A	ENST00000330684	human	ensembl	69_37n	-1	known	missense	c.2324	p.I775T	0.999	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	44	0	0.00	25	9	26.47	-	-	-
GRIN3A	0	genome.wustl.edu	37	9	104432738	104432738	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	104432738	104432738	G	T	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.1956	p.S652R	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	16	0	0.00	1	6	85.71	-	-	-
GRIN3B	0	genome.wustl.edu	37	19	1005215	1005215	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	1005215	1005215	C	T	SNP	GRIN3B	ENST00000234389	human	ensembl	69_37n	+1	known	missense	c.1715	p.P572L	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032	127	0	0.00	34	11	24.44	-	-	-
HKDC1	0	genome.wustl.edu	37	10	71010072	71010072	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	10	71010072	71010072	C	T	SNP	HKDC1	ENST00000354624	human	ensembl	69_37n	+1	known	missense	c.1597	p.L533F	1.000	pfam_Hexokinase_N,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510	45	0	0.00	13	10	43.48	-	-	-
HPS3	0	genome.wustl.edu	37	3	148884851	148884851	+	Splice_Site	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	148884851	148884851	G	A	SNP	HPS3	ENST00000460822	human	ensembl	69_37n	+1	known	splice_site	c.718-1	e5-1	1.000	-	-	-	no_start_codon	HPS3	HGNC	ENSG00000163755	10	0	0.00	7	4	36.36	-	-	-
HUWE1	0	genome.wustl.edu	37	X	53610743	53610743	+	Missense_Mutation	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	X	53610743	53610743	C	A	SNP	HUWE1	ENST00000262854	human	ensembl	69_37n	-1	known	missense	c.5295	p.M1765I	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/transl_elong_EF1B_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	62	0	0.00	49	16	24.62	-	-	-
IGHA1	0	genome.wustl.edu	37	14	106173708	106173708	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	14	106173708	106173708	G	T	SNP	IGHA1	ENST00000390547	human	ensembl	69_37n	-1	known	missense	c.859	p.Q287K	0.011	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon	IGHA1	HGNC	ENSG00000211895	111	0	0.00	33	5	13.16	-	-	-
IGKV1-27	0	genome.wustl.edu	37	2	89513340	89513340	+	Missense_Mutation	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	89513340	89513340	G	A	SNP	IGKV1-27	ENST00000498435	human	ensembl	69_37n	-1	known	missense	c.43	p.L15F	0.995	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGKV1-27	HGNC	ENSG00000244575	54	0	0.00	28	8	22.22	-	-	-
INO80D	0	genome.wustl.edu	37	2	206872095	206872095	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	206872095	206872095	G	T	SNP	INO80D	ENST00000403263	human	ensembl	69_37n	-1	known	missense	c.1831	p.P611T	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933	35	0	0.00	20	7	25.93	-	-	-
ITPRIP	0	genome.wustl.edu	37	10	106074852	106074852	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	10	106074852	106074852	C	G	SNP	ITPRIP	ENST00000278071	human	ensembl	69_37n	-1	known	missense	c.958	p.E320Q	1.000	NULL	NULL	-	no_errors	ITPRIP	HGNC	ENSG00000148841	45	0	0.00	16	19	54.29	-	-	-
JAK2	0	genome.wustl.edu	37	9	5073764	5073764	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	9	5073764	5073764	G	T	SNP	JAK2	ENST00000381652	human	ensembl	69_37n	+1	known	missense	c.1843	p.V615L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968	38	0	0.00	26	4	13.33	-	-	-
KCMF1	0	genome.wustl.edu	37	2	85280279	85280279	+	Missense_Mutation	SNP	A	A	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	85280279	85280279	A	C	SNP	KCMF1	ENST00000409785	human	ensembl	69_37n	+1	known	missense	c.893	p.D298A	1.000	NULL	pfam_Znf_ZZ,pfam_Di19_RING_finger_144,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2	-	no_errors	KCMF1	HGNC	ENSG00000176407	55	0	0.00	12	11	47.83	-	-	-
KIF13B	0	genome.wustl.edu	37	8	29043904	29043904	+	Silent	SNP	A	A	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	8	29043904	29043904	A	T	SNP	KIF13B	ENST00000524189	human	ensembl	69_37n	-1	known	silent	c.402	p.T134	0.804	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	25	0	0.00	11	3	21.43	-	-	-
KLHDC7B	0	genome.wustl.edu	37	22	50987927	50987927	+	Silent	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	22	50987927	50987927	G	A	SNP	KLHDC7B	ENST00000395676	human	ensembl	69_37n	+1	known	silent	c.1332	p.E444	1.000	smart_Kelch_1	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7B	HGNC	ENSG00000130487	35	0	0.00	19	14	42.42	-	-	-
KLHL23	0	genome.wustl.edu	37	2	170592537	170592537	+	Missense_Mutation	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	170592537	170592537	C	A	SNP	KLHL23	ENST00000272797	human	ensembl	69_37n	+1	known	missense	c.1013	p.T338K	0.998	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160	59	0	0.00	29	5	14.71	-	-	-
KRTAP10-11	0	genome.wustl.edu	37	21	46067173	46067173	+	Silent	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	21	46067173	46067173	C	T	SNP	KRTAP10-11	ENST00000334670	human	ensembl	69_37n	+1	known	silent	c.798	p.S266	0.997	NULL	NULL	-	no_errors	KRTAP10-11	HGNC	ENSG00000243489	112	0	0.00	71	43	37.72	-	-	-
LIG1	0	genome.wustl.edu	37	19	48640923	48640923	+	Missense_Mutation	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	48640923	48640923	C	A	SNP	LIG1	ENST00000542460	human	ensembl	69_37n	-1	known	missense	c.1085	p.G362V	0.998	NULL	pfam_DNA_ligase_ATP-dep_N,superfamily_DNA_ligase_ATP-dep_N	-	no_errors	LIG1	HGNC	ENSG00000105486	130	0	0.00	147	24	14.04	-	-	-
MAGI1	0	genome.wustl.edu	37	3	65425633	65425633	+	Missense_Mutation	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	65425633	65425633	C	A	SNP	MAGI1	ENST00000402939	human	ensembl	69_37n	-1	known	missense	c.1191	p.K397N	1.000	NULL	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI1	HGNC	ENSG00000151276	58	0	0.00	20	16	44.44	-	-	-
MIR152	0	genome.wustl.edu	37	17	46114548	46114548	+	RNA	SNP	T	T	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	17	46114548	46114548	T	C	SNP	MIR152	ENST00000385212	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR152	HGNC	ENSG00000207947	90	0	0.00	14	35	71.43	-	-	-
MMP15	0	genome.wustl.edu	37	16	58076179	58076179	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	58076179	58076179	C	G	SNP	MMP15	ENST00000219271	human	ensembl	69_37n	+1	known	missense	c.1209	p.N403K	1.000	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP15	HGNC	ENSG00000102996	77	0	0.00	26	20	43.48	-	-	-
MYRIP	0	genome.wustl.edu	37	3	40204291	40204291	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	40204291	40204291	G	T	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	+1	known	missense	c.540	p.R180S	0.999	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	51	0	0.00	20	20	50.00	-	-	-
NFATC1	0	genome.wustl.edu	37	18	77193711	77193711	+	Silent	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	18	77193711	77193711	G	A	SNP	NFATC1	ENST00000427363	human	ensembl	69_37n	+1	known	silent	c.1359	p.A453	0.027	pfam_RHD,superfamily_p53-like_TF_DNA-bd,prints_NFAT,pfscan_RHD	pfam_RHD,pfam_IPT_TIG_rcpt,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT_TIG_rcpt,prints_NFAT,pfscan_RHD	-	no_errors	NFATC1	HGNC	ENSG00000131196	84	0	0.00	38	7	15.56	-	-	-
NLRP5	0	genome.wustl.edu	37	19	56515220	56515220	+	Nonsense_Mutation	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	56515220	56515220	G	A	SNP	NLRP5	ENST00000390649	human	ensembl	69_37n	+1	known	nonsense	c.201	p.W67*	0.145	pfam_DAPIN,superfamily_DEATH-like	pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	41	0	0.00	29	4	12.12	-	-	-
NPAS1	0	genome.wustl.edu	37	19	47544277	47544277	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	47544277	47544277	C	G	SNP	NPAS1	ENST00000449844	human	ensembl	69_37n	+1	known	missense	c.1111	p.L371V	1.000	pfam_PAS_fold_3	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NPAS1	HGNC	ENSG00000130751	146	0	0.00	79	63	44.37	-	-	-
NWD1	0	genome.wustl.edu	37	19	16860392	16860392	+	Nonsense_Mutation	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	16860392	16860392	C	A	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	+1	known	nonsense	c.939	p.C313*	0.245	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	28	0	0.00	7	8	53.33	-	-	-
NWD1	0	genome.wustl.edu	37	19	16861091	16861091	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	16861091	16861091	G	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	+1	known	missense	c.1638	p.W546C	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	40	0	0.00	12	7	36.84	-	-	-
PLD4	0	genome.wustl.edu	37	14	105395685	105395685	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	14	105395685	105395685	G	T	SNP	PLD4	ENST00000392593	human	ensembl	69_37n	+1	known	missense	c.510	p.R170S	0.782	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428	88	0	0.00	26	32	54.24	-	-	-
POMP	0	genome.wustl.edu	37	13	29252266	29252266	+	RNA	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	13	29252266	29252266	G	T	SNP	POMP	ENST00000460403	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	POMP	HGNC	ENSG00000132963	52	0	0.00	27	4	12.90	-	-	-
PON1	0	genome.wustl.edu	37	7	94931605	94931605	+	Missense_Mutation	SNP	T	T	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	7	94931605	94931605	T	A	SNP	PON1	ENST00000222381	human	ensembl	69_37n	-1	known	missense	c.821	p.D274V	1.000	pfam_SGL,prints_Arylesterase	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase1	-	no_errors	PON1	HGNC	ENSG00000005421	30	0	0.00	22	5	18.52	-	-	-
PPP2R5A	0	genome.wustl.edu	37	1	212515539	212515539	+	Nonsense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	212515539	212515539	G	T	SNP	PPP2R5A	ENST00000261461	human	ensembl	69_37n	+1	known	nonsense	c.490	p.E164*	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5A	HGNC	ENSG00000066027	54	0	0.00	15	9	37.50	-	-	-
PSMC4	0	genome.wustl.edu	37	19	40485743	40485743	+	Silent	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	40485743	40485743	G	T	SNP	PSMC4	ENST00000157812	human	ensembl	69_37n	+1	known	silent	c.693	p.V231	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	38	0	0.00	44	11	20.00	-	-	-
PSMC4	0	genome.wustl.edu	37	19	40486244	40486244	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	40486244	40486244	C	T	SNP	PSMC4	ENST00000157812	human	ensembl	69_37n	+1	known	missense	c.970	p.P324S	1.000	pfam_ATPase_AAA_core,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC4	HGNC	ENSG00000013275	22	0	0.00	19	12	38.71	-	-	-
PSME4	0	genome.wustl.edu	37	2	54092150	54092150	+	RNA	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	54092150	54092150	C	T	SNP	PSME4	ENST00000476586	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	PSME4	HGNC	ENSG00000068878	43	0	0.00	14	7	33.33	-	-	-
PTEN	0	genome.wustl.edu	37	10	89692893	89692893	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	10	89692893	89692893	C	G	SNP	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	missense	c.377	p.A126G	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	83	0	0.00	31	28	47.46	-	-	-
RHD	0	genome.wustl.edu	37	1	25655578	25655578	+	Missense_Mutation	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	25655578	25655578	C	A	SNP	RHD	ENST00000342055	human	ensembl	69_37n	+1	putative	missense	c.1433	p.S478Y	0.609	NULL	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHD	HGNC	ENSG00000187010	23	0	0.00	5	13	72.22	-	-	-
RPL13P5	0	genome.wustl.edu	37	12	6993532	6993532	+	RNA	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	12	6993532	6993532	C	A	SNP	RPL13P5	ENST00000412023	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL13P5	HGNC	ENSG00000240370	65	0	0.00	21	8	27.59	-	-	-
SCN3A	0	genome.wustl.edu	37	2	165952042	165952042	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	165952042	165952042	G	T	SNP	SCN3A	ENST00000283254	human	ensembl	69_37n	-1	known	missense	c.4410	p.N1470K	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN3A	HGNC	ENSG00000153253	35	0	0.00	25	3	10.71	-	-	-
SLC25A41	0	genome.wustl.edu	37	19	6432215	6432215	+	Missense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	6432215	6432215	C	G	SNP	SLC25A41	ENST00000321510	human	ensembl	69_37n	-1	known	missense	c.208	p.V70L	0.999	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240	40	0	0.00	22	8	26.67	-	-	-
SLC43A3	0	genome.wustl.edu	37	11	57182476	57182476	+	Missense_Mutation	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	11	57182476	57182476	C	A	SNP	SLC43A3	ENST00000352187	human	ensembl	69_37n	-1	known	missense	c.873	p.L291F	0.997	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A3	HGNC	ENSG00000134802	53	0	0.00	37	5	11.90	-	-	-
SLC7A5	0	genome.wustl.edu	37	16	87902747	87902747	+	Silent	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	87902747	87902747	G	A	SNP	SLC7A5	ENST00000261622	human	ensembl	69_37n	-1	known	silent	c.282	p.V94	1.000	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A5	HGNC	ENSG00000103257	115	0	0.00	50	13	20.63	-	-	-
SLC8A3	0	genome.wustl.edu	37	14	70634857	70634857	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	14	70634857	70634857	C	T	SNP	SLC8A3	ENST00000381269	human	ensembl	69_37n	-1	known	missense	c.283	p.A95T	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	55	0	0.00	24	7	22.58	-	-	-
SNORD114-17	0	genome.wustl.edu	37	14	101441215	101441215	+	RNA	SNP	C	C	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	14	101441215	101441215	C	A	SNP	SNORD114-17	ENST00000364699	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	SNORD114-17	HGNC	ENSG00000201569	16	0	0.00	3	6	66.67	-	-	-
SNORD18B	0	genome.wustl.edu	37	15	66794392	66794392	+	RNA	SNP	G	G	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	15	66794392	66794392	G	C	SNP	SNORD18B	ENST00000365659	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD18B	HGNC	ENSG00000202529	35	0	0.00	4	10	71.43	-	-	-
SPAG9	0	genome.wustl.edu	37	17	49197891	49197891	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	17	49197891	49197891	C	T	SNP	SPAG9	ENST00000262013	human	ensembl	69_37n	-1	known	missense	c.127	p.D43N	1.000	pfam_JNK/Rab-associated_protein-1_N	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	SPAG9	HGNC	ENSG00000008294	70	0	0.00	17	29	63.04	-	-	-
SUV39H1	0	genome.wustl.edu	37	X	48557406	48557406	+	Missense_Mutation	SNP	G	G	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	X	48557406	48557406	G	T	SNP	SUV39H1	ENST00000337852	human	ensembl	69_37n	+1	known	missense	c.166	p.V56F	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pirsf_Histone_H3-K9_MeTrfase,pfscan_Chromo_domain/shadow	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H1	HGNC	ENSG00000101945	54	0	0.00	41	5	10.87	-	-	-
TAS1R2	0	genome.wustl.edu	37	1	19186013	19186013	+	Missense_Mutation	SNP	T	T	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	19186013	19186013	T	C	SNP	TAS1R2	ENST00000375371	human	ensembl	69_37n	-1	novel	missense	c.142	p.I48V	0.029	NULL	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002	46	0	0.00	15	16	51.61	-	-	-
TCFL5	0	genome.wustl.edu	37	20	61492866	61492866	+	Frame_Shift_Del	DEL	C	C	-			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	20	61492866	61492866	C	-	DEL	TCFL5	ENST00000335351	human	ensembl	69_37n	-1	known	frame_shift_del	c.157	p.E53fs	0.994	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	TCFL5	HGNC	ENSG00000101190	10	0	0.00	2	2	50.00	-	-	-
TMED10	0	genome.wustl.edu	37	14	75602565	75602565	+	Missense_Mutation	SNP	G	G	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	14	75602565	75602565	G	C	SNP	TMED10	ENST00000303575	human	ensembl	69_37n	-1	known	missense	c.436	p.P146A	1.000	pfam_GOLD,pfscan_GOLD	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED10	HGNC	ENSG00000170348	34	0	0.00	13	10	43.48	-	-	-
TMEM229A	0	genome.wustl.edu	37	7	123672212	123672212	+	Silent	SNP	A	A	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	7	123672212	123672212	A	G	SNP	TMEM229A	ENST00000455783	human	ensembl	69_37n	-1	known	silent	c.846	p.F282	0.104	NULL	NULL	-	no_errors	TMEM229A	HGNC	ENSG00000234224	33	0	0.00	12	16	57.14	-	-	-
TNR	0	genome.wustl.edu	37	1	175334320	175334320	+	Missense_Mutation	SNP	T	T	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	175334320	175334320	T	G	SNP	TNR	ENST00000263525	human	ensembl	69_37n	-1	known	missense	c.2413	p.I805L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147	47	0	0.00	29	9	23.68	-	-	-
TNRC6A	0	genome.wustl.edu	37	16	24788394	24788394	+	Nonsense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	16	24788394	24788394	C	T	SNP	TNRC6A	ENST00000395799	human	ensembl	69_37n	+1	known	nonsense	c.304	p.Q102*	0.897	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	68	0	0.00	32	13	28.89	-	-	-
TNS1	0	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	218712887	218712889	GCT	-	DEL	TNS1	ENST00000171887	human	ensembl	69_37n	-1	known	in_frame_del	c.1978_1976	p.Q659in_frame_del	1.000:1.000:0.994	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308	32	0	0.00	17	3	14.29	-	-	-
TP53	0	genome.wustl.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	17	7577099	7577099	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.839	p.R280K	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	45	0	0.00	11	19	63.33	-	-	-
TRRAP	0	genome.wustl.edu	37	7	98493397	98493397	+	Missense_Mutation	SNP	T	T	C			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	7	98493397	98493397	T	C	SNP	TRRAP	ENST00000359863	human	ensembl	69_37n	+1	known	missense	c.461	p.F154S	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	63	0	0.00	59	14	19.18	-	-	-
TTC24	0	genome.wustl.edu	37	1	156551235	156551235	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	156551235	156551235	A	T	SNP	TTC24	ENST00000368236	human	ensembl	69_37n	+1	known	nonsense	c.79	p.R27*	0.001	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC24	HGNC	ENSG00000187862	22	0	0.00	24	15	38.46	-	-	-
UBAP2L	0	genome.wustl.edu	37	1	154231333	154231333	+	RNA	SNP	G	G	A			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	154231333	154231333	G	A	SNP	UBAP2L	ENST00000484696	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBAP2L	HGNC	ENSG00000143569	118	0	0.00	65	65	50.00	-	-	-
UNC80	0	genome.wustl.edu	37	2	210705293	210705293	+	Nonsense_Mutation	SNP	C	C	G			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	210705293	210705293	C	G	SNP	UNC80	ENST00000439458	human	ensembl	69_37n	+1	known	nonsense	c.3284	p.S1095*	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406	38	0	0.00	25	4	13.33	-	-	-
USP34	0	genome.wustl.edu	37	2	61441300	61441300	+	Missense_Mutation	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	2	61441300	61441300	C	T	SNP	USP34	ENST00000411912	human	ensembl	69_37n	-1	novel	missense	c.1855	p.A619T	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	USP34	HGNC	ENSG00000115464	65	0	0.00	45	10	18.18	-	-	-
WASH3P	0	genome.wustl.edu	37	15	102514187	102514187	+	RNA	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	15	102514187	102514187	C	T	SNP	WASH3P	ENST00000557932	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596	178	0	0.00	54	12	18.18	-	-	-
ZBTB40	0	genome.wustl.edu	37	1	22852823	22852823	+	Silent	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	1	22852823	22852823	C	T	SNP	ZBTB40	ENST00000375647	human	ensembl	69_37n	+1	known	silent	c.3654	p.L1218	0.745	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677	126	0	0.00	40	6	13.04	-	-	-
ZNF586	0	genome.wustl.edu	37	19	58290715	58290715	+	Nonsense_Mutation	SNP	A	A	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	19	58290715	58290715	A	T	SNP	ZNF586	ENST00000396154	human	ensembl	69_37n	+1	known	nonsense	c.760	p.R254*	0.140	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF586	HGNC	ENSG00000083828	43	0	0.00	22	16	42.11	-	-	-
ZNF589	0	genome.wustl.edu	37	3	48298422	48298422	+	RNA	SNP	C	C	T			TCGA-LL-A5YP-01A-21D-A28B-09	TCGA-LL-A5YP-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a6206343-6d41-485a-8992-3a466df43286	fe144218-875d-423c-80d7-05de5b2e1496	3	48298422	48298422	C	T	SNP	ZNF589	ENST00000454212	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	ZNF589	HGNC	ENSG00000164048	31	0	0.00	8	10	55.56	-	-	-
