Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCP2	84809	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	G	A	rs28392876	by1000genomes	TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr1:16946438G>A	uc010ocf.2	-	2		c.460C>T			CROCCP2_uc009vov.2_Non-coding_Transcript|CROCCP2_uc001aze.3_Non-coding_Transcript|CROCCP2_uc001azf.3_Non-coding_Transcript					Homo sapiens ciliary rootlet coiled-coil, rootletin pseudogene 2 (CROCCP2), non-coding RNA.																		GCCTTCCGCCGGGCCAGCAGC	0.672000													4	22					0	0	1	0	0
TELO2	9894	broad.mit.edu	37	16	1550606	1550606	+	Missense_Mutation	SNP	A	A	G			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr16:1550606A>G	uc002cly.3	+	8	1478	c.1187A>G	c.(1186-1188)gAc>gGc	p.D396G	TELO2_uc010uvg.1_Missense_Mutation_p.D396G	NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	Homo sapiens TEL2, telomere maintenance 2, homolog (S. cerevisiae) (TELO2), mRNA.	396						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding			NS(1)|endometrium(1)|kidney(5)|lung(9)|ovary(1)|skin(1)|urinary_tract(1)	19		Hepatocellular(780;0.219)				TGCCGCCTGGACAGTAGCCTG	0.701000													3	26					0	0	1	0	0
AGAP9	642517	broad.mit.edu	37	10	47207813	47207813	+	Splice_Site	SNP	T	T	C			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr10:47207813T>C	uc009xnf.2	-	4	508	c.396_splice	c.e4+1	p.H132_splice	AGAP9_uc001jei.3_Splice_Site	NM_001190810	NP_001177739	D3YTF3	D3YTF3_HUMAN	Homo sapiens ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 (AGAP9), mRNA.	132					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding	p.H228R(20)									TTTACTTACATGGTTTGTACA	0.294000													5	26					0	0	1	0	0
CNPY3	10695	broad.mit.edu	37	6	42897358	42897360	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr6:42897358_42897360delTGC	uc003ota.4	+	0	499_501	c.50_52delTGC	c.(49-54)ttgctg>ttg	p.17_18LL>L	CNPY3_uc003osy.2_Non-coding_Transcript|CNPY3_uc003otb.4_5'UTR	NM_006586	NP_006577	Q9BT09	CNPY3_HUMAN	Homo sapiens canopy 3 homolog (zebrafish) (CNPY3), mRNA.	17					innate immune response	endoplasmic reticulum		p.L25delL(1)		central_nervous_system(1)|endometrium(1)|lung(3)|ovary(1)	6	Colorectal(47;0.196)		all cancers(41;0.000954)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			CTTCTTCCCTtgctgctgctgct	0.695													3	6	---	---	---	---					
LMOD2	442721	broad.mit.edu	37	7	123301995	123301997	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr7:123301995_123301997delGAG	uc003vky.2	+	1	512_514	c.355_357delGAG	c.(355-357)gagdel	p.E124del		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	Homo sapiens leiomodin 2 (cardiac) (LMOD2), mRNA.	124	Glu-rich.					cytoskeleton	actin binding|tropomyosin binding										AGTGTATACAgaggaggaggagg	0.409													2	4	---	---	---	---					
AGAP6	414189	broad.mit.edu	37	10	51748528	51748529	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EJ-A46B-01A-31D-A257-08	TCGA-EJ-A46B-10A-01D-A25A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	71680fa7-bf45-4381-828f-0cc1f73a13c6	94207d64-f627-4ce4-b463-6ea128d2ad79	g.chr10:51748528_51748529insC	uc001jix.4	+	0	451_452	c.53_54insC	c.(52-54)gacfs	p.D18fs		NM_001077665	NP_001071133	C9IYN2	C9IYN2_HUMAN	Homo sapiens ArfGAP with GTPase domain, ankyrin repeat and PH domain 6 (AGAP6), mRNA.	18					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			NS(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|liver(1)|lung(8)|prostate(3)|skin(1)|stomach(2)	29						CTCGAGTTTGACCAGCAGCAGG	0.604													4	5	---	---	---	---					
