Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRPF18	8559	broad.mit.edu	37	10	13642288	13642288	+	Silent	SNP	T	T	C			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr10:13642288T>C	uc001imp.3	+	2	337	c.189T>C	c.(187-189)aaT>aaC	p.N63N	PRPF18_uc001imq.3_Intron	NM_003675	NP_003666	Q99633	PRP18_HUMAN	Homo sapiens PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae) (PRPF18), mRNA.	63					RNA splicing|mRNA processing	nuclear speck|spliceosomal complex		p.S62S(2)|p.S62L(1)		central_nervous_system(1)|endometrium(5)|large_intestine(5)|lung(5)|prostate(1)	17						CTTCATCGAATCCAGTGTTAG	0.338000													4	51					0	0	1	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651459	1651459	+	Missense_Mutation	SNP	G	G	T			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr11:1651459G>T	uc001lty.3	+	0	427	c.389G>T	c.(388-390)gGc>gTc	p.G130V	MOB2_uc001ltq.2_Intron	NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	Homo sapiens keratin associated protein 5-5 (KRTAP5-5), mRNA.	130	8 X 4 AA repeats of C-C-X-P.					keratin filament				endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(17)|ovary(2)|prostate(5)|urinary_tract(1)	33		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGGGGCTGTGGCTCCTGTGGG	0.692000													4	40					0	0	1	0	0
AGAP9	642517	broad.mit.edu	37	10	47207813	47207813	+	Splice_Site	SNP	T	T	C			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr10:47207813T>C	uc009xnf.2	-	4	508	c.396_splice	c.e4+1	p.H132_splice	AGAP9_uc001jei.3_Splice_Site	NM_001190810	NP_001177739	D3YTF3	D3YTF3_HUMAN	Homo sapiens ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 (AGAP9), mRNA.	132					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding	p.H228R(20)									TTTACTTACATGGTTTGTACA	0.294000													7	11					0	0	1	0	0
C17orf62	79415	broad.mit.edu	37	17	80401693	80401693	+	Silent	SNP	C	C	T	rs145920831	by1000genomes	TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr17:80401693C>T	uc002kex.3	-	1	1048	c.306G>A	c.(304-306)ccG>ccA	p.P102P	C17orf62_uc002key.3_Silent_p.P102P|C17orf62_uc021ufq.1_3'UTR|C17orf62_uc010dir.3_3'UTR|C17orf62_uc021ufr.1_Silent_p.P102P|C17orf62_uc021ufs.1_3'UTR|C17orf62_uc002kfb.4_3'UTR|C17orf62_uc002kfc.4_3'UTR|C17orf62_uc002kfd.4_Silent_p.P102P|C17orf62_uc002kfa.3_3'UTR|C17orf62_uc002kfe.4_Silent_p.P102P|C17orf62_uc021uft.1_3'UTR|C17orf62_uc021ufu.1_Silent_p.P102P			Q9BQA9	CQ062_HUMAN	Homo sapiens chromosome 17 open reading frame 62 (C17orf62), transcript variant 11, non-coding RNA.	0						integral to membrane	protein binding	p.P140P(1)		breast(2)|large_intestine(2)|skin(2)|urinary_tract(2)	8	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			GAATGTGCCACGGGTCCTGTG	0.682000													6	96					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52529474	52529474	+	Silent	SNP	C	C	T			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr3:52529474C>T	uc003dej.3	+	0	119	c.45C>T	c.(43-45)ttC>ttT	p.F15F	STAB1_uc003dei.1_Silent_p.F15F	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	Homo sapiens stabilin 1 (STAB1), mRNA.	15					cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			breast(4)|central_nervous_system(3)|endometrium(7)|kidney(2)|large_intestine(13)|liver(1)|lung(27)|ovary(1)|pancreas(1)|prostate(4)|skin(6)|upper_aerodigestive_tract(4)|urinary_tract(3)	76				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCCTGGCCTTCTGCCTGGCAG	0.692000													3	24					0	0	1	0	0
KIF1B	23095	broad.mit.edu	37	1	10380118	10380118	+	Silent	SNP	G	G	A			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr1:10380118G>A	uc001aqx.4	+	22	2335	c.2133G>A	c.(2131-2133)ttG>ttA	p.L711L	KIF1B_uc001aqw.4_Silent_p.L665L|KIF1B_uc001aqy.3_Silent_p.L685L|KIF1B_uc001aqz.3_Silent_p.L711L|KIF1B_uc001ara.3_Silent_p.L671L|KIF1B_uc001arb.3_Silent_p.L697L	NM_015074	NP_055889	O60333	KIF1B_HUMAN	Homo sapiens kinesin family member 1B (KIF1B), transcript variant 1, mRNA.	711					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			breast(2)|endometrium(7)|kidney(8)|large_intestine(9)|lung(29)|ovary(3)|prostate(3)|skin(5)|stomach(3)|upper_aerodigestive_tract(2)	71	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		AGAGTAAATTGCAGGCCTTGC	0.443000													8	21					0	0	1	0	0
URGCP	55665	broad.mit.edu	37	7	43917695	43917695	+	Missense_Mutation	SNP	C	C	T			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr7:43917695C>T	uc003tiw.3	-	5	1424	c.1367G>A	c.(1366-1368)cGc>cAc	p.R456H	URGCP_uc022acg.1_Intron|URGCP_uc003tiu.3_Missense_Mutation_p.R413H|URGCP_uc003tiv.3_Missense_Mutation_p.R381H|URGCP_uc003tix.3_Missense_Mutation_p.R447H|URGCP_uc003tiy.3_Missense_Mutation_p.R413H|URGCP_uc003tiz.3_Missense_Mutation_p.R413H|URGCP_uc011kbj.2_Missense_Mutation_p.R413H	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	Homo sapiens upregulator of cell proliferation (URGCP), nuclear gene encoding mitochondrial protein, transcript variant 3, mRNA.	456					cell cycle	centrosome|nucleus	GTP binding			breast(3)|endometrium(4)|kidney(2)|large_intestine(3)|liver(1)|lung(13)|ovary(2)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	34						GCCCAGTTTGCGGGCTGCGTG	0.582000													4	172					0	0	1	0	0
AP2A2	161	broad.mit.edu	37	11	1003772	1003772	+	Missense_Mutation	SNP	T	T	A			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr11:1003772T>A	uc001lst.2	+	15	2390	c.2177T>A	c.(2176-2178)aTt>aAt	p.I726N	AP2A2_uc009yco.2_Non-coding_Transcript|AP2A2_uc001lss.3_Missense_Mutation_p.I725N	NM_001242837	NP_001229766	O94973	AP2A2_HUMAN	Homo sapiens adaptor-related protein complex 2, alpha 2 subunit (AP2A2), transcript variant 1, mRNA.	725					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity			breast(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(6)|ovary(2)	21		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		CTGCTTCAAATTGGACTTAAG	0.343000													3	20					0	0	1	0	0
MYBPH	4608	broad.mit.edu	37	1	203140290	203140290	+	Missense_Mutation	SNP	C	C	T			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr1:203140290C>T	uc001gzh.1	-	5	891	c.832G>A	c.(832-834)Gtc>Atc	p.V278I		NM_004997	NP_004988	Q13203	MYBPH_HUMAN	Homo sapiens myosin binding protein H (MYBPH), mRNA.	278	Fibronectin type-III 2.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle			endometrium(5)|large_intestine(6)|lung(7)|skin(1)|urinary_tract(1)	20			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		CAGCCCCAGACGTCCAGGAGC	0.612000													4	75					0	0	1	0	0
CTBP2	1488	broad.mit.edu	37	10	126682486	126682486	+	Silent	SNP	T	T	C	rs76949963	by1000genomes	TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr10:126682486T>C	uc009yak.3	-	7	1136	c.849A>G	c.(847-849)caA>caG	p.Q283Q	CTBP2_uc009yal.3_Silent_p.Q283Q|CTBP2_uc001lif.4_Silent_p.Q283Q|CTBP2_uc001lih.4_Silent_p.Q283Q|CTBP2_uc001lid.4_Silent_p.Q351Q|CTBP2_uc001lie.4_Silent_p.Q823Q	NM_001329	NP_001320	P56545	CTBP2_HUMAN	Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 1, mRNA.	283					negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent|viral genome replication|white fat cell differentiation	cell junction|synapse|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein binding			breast(1)|central_nervous_system(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(7)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	25		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.173)		Colorectal(40;0.00572)|COAD - Colon adenocarcinoma(40;0.0127)|GBM - Glioblastoma multiforme(135;0.147)		CCTTGAGGGCTTGTGCTAAGG	0.617000													5	194					0	0	1	0	0
HLA-G	3135	broad.mit.edu	37	6	29855805	29855805	+	Silent	SNP	C	C	G			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr6:29855805C>G	uc010jro.3	+	1	299	c.153C>G	c.(151-153)gtC>gtG	p.V51V	HLA-G_uc021ytw.1_Intron|HLA-G_uc011dmb.2_Intron|HLA-J_uc021yty.1_5'Flank|HLA-G_uc021ytv.1_Intron|HLA-J_uc021ytx.1_5'Flank			P17693	HLAG_HUMAN	Homo sapiens major histocompatibility complex, class I, H (pseudogene) (HLA-H), non-coding RNA.	49	Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	MHC class I protein complex|integral to membrane	MHC class I receptor activity			central_nervous_system(1)|endometrium(1)|large_intestine(5)|lung(4)|ovary(3)|pancreas(1)|prostate(5)|skin(1)	21						TCATCTCCGTCGGCTACGTGG	0.682000													5	22					0	0	1	0	0
CCBL1	883	broad.mit.edu	37	9	131599993	131599993	+	Missense_Mutation	SNP	G	G	C			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr9:131599993G>C	uc004bwh.3	-	5	723	c.538C>G	c.(538-540)Ctc>Gtc	p.L180V	CCBL1_uc004bwg.3_Non-coding_Transcript|CCBL1_uc010myn.3_Missense_Mutation_p.L180V|CCBL1_uc004bwj.3_Missense_Mutation_p.L130V|CCBL1_uc004bwi.3_Non-coding_Transcript|CCBL1_uc011mbl.2_Missense_Mutation_p.L274V	NM_004059	NP_004050	Q16773	KAT1_HUMAN	Homo sapiens cysteine conjugate-beta lyase, cytoplasmic (CCBL1), transcript variant 1, mRNA.	180					L-phenylalanine catabolic process|kynurenine metabolic process|tryptophan catabolic process	cytosol|nucleus	1-aminocyclopropane-1-carboxylate synthase activity|L-glutamine:pyruvate aminotransferase activity|L-phenylalanine:pyruvate aminotransferase activity|cysteine-S-conjugate beta-lyase activity|glutamine-phenylpyruvate transaminase activity|kynurenine-oxoglutarate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(10)|ovary(1)|prostate(1)|skin(1)	18					L-Glutamine(DB00130)|Pyridoxal Phosphate(DB00114)	GGGGTGTTGAGGACCAGGGCT	0.607000													4	68					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38949966	38949966	+	Missense_Mutation	SNP	C	C	T			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr19:38949966C>T	uc002oit.3	+	18	2478	c.2348C>T	c.(2347-2349)tCg>tTg	p.S783L	RYR1_uc002oiu.3_Missense_Mutation_p.S783L	NM_000540	NP_000531	P21817	RYR1_HUMAN	Homo sapiens ryanodine receptor 1 (skeletal) (RYR1), transcript variant 1, mRNA.	783	B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	I band|cell cortex|cytosol|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(4)|autonomic_ganglia(2)|breast(3)|central_nervous_system(5)|endometrium(26)|haematopoietic_and_lymphoid_tissue(3)|kidney(34)|large_intestine(42)|liver(1)|lung(106)|ovary(11)|pancreas(5)|prostate(9)|skin(12)|stomach(11)|upper_aerodigestive_tract(4)|urinary_tract(7)	285	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GTCAGCTTCTCGGCTGGTGTC	0.607000													3	33					0	0	1	0	0
HRCT1	646962	broad.mit.edu	37	9	35906559	35906559	+	Missense_Mutation	SNP	A	A	C			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr9:35906559A>C	uc003zyr.1	+	0	371	c.275A>C	c.(274-276)cAc>cCc	p.H92P	LOC158376_uc003zys.1_5'Flank	NM_001039792	NP_001034881	Q6UXD1	HRCT1_HUMAN	Homo sapiens histidine rich carboxyl terminus 1 (HRCT1), mRNA.	92	His-rich.					integral to membrane		p.H92P(2)		NS(1)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|prostate(1)	4						caccaccaccacccccgccac	0.682000													10	14					0	0	1	0	0
SETD2	29072	broad.mit.edu	37	3	47103828	47103828	+	Nonsense_Mutation	SNP	G	G	A			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr3:47103828G>A	uc003cqv.3	-	14	6405	c.6319C>T	c.(6319-6321)Cga>Tga	p.R2107*	SETD2_uc003cqs.3_Nonsense_Mutation_p.R2040*|SETD2_uc003cqt.1_Non-coding_Transcript	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	Homo sapiens SET domain containing 2 (SETD2), mRNA.	2040					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			breast(6)|central_nervous_system(5)|endometrium(4)|kidney(63)|large_intestine(18)|lung(26)|ovary(6)|prostate(2)|skin(3)|soft_tissue(1)|stomach(2)|urinary_tract(5)	141		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		TCCCTTCCTCGTTCAGTTGCT	0.388000			"""N, F, S, Mis"""		clear cell renal carcinoma								10	215					0	0	1	0	0
CTBP2	1488	broad.mit.edu	37	10	126682516	126682516	+	Silent	SNP	G	G	A			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr10:126682516G>A	uc009yak.3	-	7	1106	c.819C>T	c.(817-819)ggC>ggT	p.G273G	CTBP2_uc009yal.3_Silent_p.G273G|CTBP2_uc001lif.4_Silent_p.G273G|CTBP2_uc001lih.4_Silent_p.G273G|CTBP2_uc001lid.4_Silent_p.G341G|CTBP2_uc001lie.4_Silent_p.G813G	NM_001329	NP_001320	P56545	CTBP2_HUMAN	Homo sapiens C-terminal binding protein 2 (CTBP2), transcript variant 1, mRNA.	273					negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent|viral genome replication|white fat cell differentiation	cell junction|synapse|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein binding			breast(1)|central_nervous_system(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(7)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	25		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.173)		Colorectal(40;0.00572)|COAD - Colon adenocarcinoma(40;0.0127)|GBM - Glioblastoma multiforme(135;0.147)		CCACCAGGCCGCCACGGGCTG	0.582000													5	167					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414340	20414340	+	Silent	SNP	G	G	A			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr9:20414340G>A	uc003zoe.2	-	4	763	c.504C>T	c.(502-504)agC>agT	p.S168S	MLLT3_uc011lne.1_Silent_p.S136S|MLLT3_uc011lnf.1_Silent_p.S165S|MLLT3_uc003zof.3_5'UTR	NM_004529	NP_004520	P42568	AF9_HUMAN	Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (MLLT3), mRNA.	168	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding	p.S167S(19)|p.S168S(10)		central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(6)|lung(24)|ovary(1)|prostate(4)|skin(1)|urinary_tract(7)	66				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctgctactgctgc	0.537000			T	MLL	ALL								5	48					0	0	1	0	0
DNAJB8	165721	broad.mit.edu	37	3	128181414	128181414	+	Missense_Mutation	SNP	C	C	A			TCGA-H9-A6BX-01A-31D-A30X-08	TCGA-H9-A6BX-10A-01D-A30X-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	30eed465-db39-4e44-8663-e25e7d2dfe01	59d383d8-c1ee-4cf7-b802-0a75b257e576	g.chr3:128181414C>A	uc003ekk.1	-	2	2336	c.675G>T	c.(673-675)caG>caT	p.Q225H	DNAJB8-AS1_uc003ekl.1_5'Flank|DNAJB8_uc021xdk.1_Missense_Mutation_p.Q225H	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 8 (DNAJB8), mRNA.	225					protein folding		heat shock protein binding|unfolded protein binding			kidney(1)|large_intestine(4)|lung(4)|prostate(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.177)		TCCATTTGAGCTGCTCCTTGC	0.632000													6	141					0	0	1	0	0
