Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PASD1	139135	broad.mit.edu	37	X	150828276	150828276	+	Missense_Mutation	SNP	C	C	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chrX:150828276C>G	uc004fev.4	+	9	1141	c.809C>G	c.(808-810)aCa>aGa	p.T270R		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	Homo sapiens PAS domain containing 1 (PASD1), mRNA.	270						nucleus	signal transducer activity			breast(2)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(3)|liver(1)|lung(25)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	48	Acute lymphoblastic leukemia(192;6.56e-05)					TGCTCCAGTACAGTTTTCCTG	0.403000													4	37					0	0	1	0	0
CPAMD8	27151	broad.mit.edu	37	19	17015110	17015110	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr19:17015110C>T	uc002nfb.3	-	31	4350	c.4318G>A	c.(4318-4320)Gtg>Atg	p.V1440M	CPAMD8_uc002nfd.1_5'Flank	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	Homo sapiens C3 and PZP-like, alpha-2-macroglobulin domain containing 8 (CPAMD8), mRNA.	1393						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			breast(11)|central_nervous_system(3)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(17)|lung(14)|ovary(7)|pancreas(2)|prostate(4)|skin(5)	82						GCGGCAGCCACGTCACCCAGC	0.632000													6	45					0	0	1	0	0
KRTAP4-6	81871	broad.mit.edu	37	17	39296152	39296152	+	Silent	SNP	A	A	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr17:39296152A>G	uc010cxk.2	-	0	588	c.588T>C	c.(586-588)cgT>cgC	p.R196R		NM_030976	NP_112238	Q9BYQ5	KRA46_HUMAN	Homo sapiens keratin associated protein 4-6 (KRTAP4-6), mRNA.	192						keratin filament				endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|lung(1)|prostate(1)|urinary_tract(1)	9						AGCACAAGGGACGGGGGCAGG	0.597000													4	12					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr20:29628245G>A	uc010ztl.1	+	2	189	c.157G>A	c.(157-159)Gcc>Acc	p.A53T	FRG1B_uc002wvm.1_Non-coding_Transcript|FRG1B_uc010ztj.1_Non-coding_Transcript|FRG1B_uc010gdr.1_Non-coding_Transcript|FRG1B_uc010ztk.1_Missense_Mutation_p.A5T					Homo sapiens FSHD region gene 1 family, member B (FRG1B), non-coding RNA.									p.A83T(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GGCTTTGTTGGCCTCAAATAG	0.353000													4	142					0	0	1	0	0
SPARCL1	8404	broad.mit.edu	37	4	88403694	88403694	+	Missense_Mutation	SNP	T	T	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr4:88403694T>C	uc010ikm.3	-	8	2122	c.1550A>G	c.(1549-1551)gAc>gGc	p.D517G	SPARCL1_uc011cdc.2_Missense_Mutation_p.D392G|SPARCL1_uc003hqs.4_Missense_Mutation_p.D517G|SPARCL1_uc011cdd.2_Missense_Mutation_p.D392G	NM_001128310	NP_004675	Q14515	SPRL1_HUMAN	Homo sapiens SPARC-like 1 (hevin) (SPARCL1), transcript variant 1, mRNA.	517					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			breast(1)|endometrium(2)|kidney(1)|large_intestine(5)|lung(7)|ovary(1)|skin(2)|stomach(2)	21				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		CACTTCAAAGTCCGTACAAGT	0.408000													7	38					0	0	1	0	0
UBTF	7343	broad.mit.edu	37	17	42293035	42293035	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr17:42293035G>A	uc010czs.3	-	4	757	c.461C>T	c.(460-462)cCg>cTg	p.P154L	UBTF_uc002igc.3_Missense_Mutation_p.P154L|UBTF_uc002igd.3_Missense_Mutation_p.P154L|UBTF_uc010czt.3_Missense_Mutation_p.P154L|UBTF_uc002ige.2_Missense_Mutation_p.P154L	NM_014233	NP_055048	P17480	UBF1_HUMAN	Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), transcript variant 1, mRNA.	154					positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding			breast(1)|central_nervous_system(2)|endometrium(1)|large_intestine(9)|lung(10)|ovary(1)|prostate(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	29		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		CTTCTTCTCCGGAAGCTCCTT	0.557000													14	136					0	0	1	0	0
ZNF480	147657	broad.mit.edu	37	19	52825756	52825756	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr19:52825756G>A	uc010ydl.2	+	4	1323	c.1253G>A	c.(1252-1254)cGa>cAa	p.R418Q	ZNF480_uc002pyv.3_Missense_Mutation_p.R341Q|ZNF480_uc010ydm.2_Missense_Mutation_p.R375Q|ZNF480_uc010epn.3_Missense_Mutation_p.R249Q|AK097759_uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	Homo sapiens zinc finger protein 480 (ZNF480), mRNA.	418					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			endometrium(2)|kidney(1)|large_intestine(3)|lung(4)|prostate(1)|upper_aerodigestive_tract(1)	12				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		GCACGACATCGAAGAATTCAT	0.373000													13	89					0	0	1	0	0
CPPED1	55313	broad.mit.edu	37	16	12875121	12875121	+	Silent	SNP	T	T	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr16:12875121T>C	uc002dca.4	-	1	321	c.210A>G	c.(208-210)caA>caG	p.Q70Q	CPPED1_uc002dcb.4_Silent_p.Q70Q	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	Homo sapiens calcineurin-like phosphoesterase domain containing 1 (CPPED1), transcript variant 1, mRNA.	70							hydrolase activity|metal ion binding			cervix(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(10)|skin(1)|urinary_tract(1)	18						CCTGGACGGCTTGCTCAGTTA	0.572000													4	38					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027375	37027375	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chrX:37027375C>T	uc004ddl.2	+	0	944	c.892C>T	c.(892-894)Cct>Tct	p.P298S		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	Homo sapiens family with sequence similarity 47, member C (FAM47C), mRNA.	298								p.P298P(1)		breast(4)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(15)|lung(63)|ovary(6)|pancreas(1)|prostate(6)|skin(8)|upper_aerodigestive_tract(4)|urinary_tract(1)	120						CCATCGGGAGCCTCCTGAGAC	0.592000													15	57					0	0	1	0	0
NR2F2	7026	broad.mit.edu	37	15	96875647	96875647	+	Missense_Mutation	SNP	C	C	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr15:96875647C>G	uc010uri.2	+	0	1537	c.313C>G	c.(313-315)Cgc>Ggc	p.R105G	NR2F2_uc002btp.3_Intron|NR2F2_uc010urj.2_5'Flank|MIR1469_uc021swi.1_5'Flank|NR2F2_uc010urk.2_5'Flank	NM_021005	NP_001138629	P24468	COT2_HUMAN	Homo sapiens nuclear receptor subfamily 2, group F, member 2 (NR2F2), transcript variant 1, mRNA.	105					lipid metabolic process|negative regulation of cyclin-dependent protein kinase activity|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment	nucleus	ligand-regulated transcription factor activity|protein homodimerization activity|retinoic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity|zinc ion binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(6)|liver(2)|lung(3)|ovary(2)|urinary_tract(1)	17	Lung NSC(78;0.0186)|Melanoma(26;0.0195)|all_lung(78;0.0297)		OV - Ovarian serous cystadenocarcinoma(32;0.0856)			CTTCTTCAAGCGCAGCGTGCG	0.612000													3	31					0	0	1	0	0
SELPLG	6404	broad.mit.edu	37	12	109017473	109017473	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:109017473G>A	uc010sxe.2	-	1	836	c.659C>T	c.(658-660)aCt>aTt	p.T220I	SELPLG_uc001tni.3_Missense_Mutation_p.T204I|SELPLG_uc021rdm.1_Missense_Mutation_p.T194I|SELPLG_uc001tnh.3_Missense_Mutation_p.T194I	NM_001206609	NP_001193538	Q14242	SELPL_HUMAN	Homo sapiens selectin P ligand (SELPLG), transcript variant 1, mRNA.	204	12 X 10 AA tandem repeats.				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(3)|prostate(3)|skin(1)	12						TGCTGGTGCAGTGGTCTGTGC	0.612000													11	42					0	0	1	0	0
LCMT2	9836	broad.mit.edu	37	15	43621413	43621413	+	Silent	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr15:43621413G>A	uc001zrg.3	-	0	1408	c.1275C>T	c.(1273-1275)ctC>ctT	p.L425L	ADAL_uc001zrh.3_5'Flank|ADAL_uc010udo.2_5'Flank	NM_014793	NP_055608	O60294	LCMT2_HUMAN	Homo sapiens leucine carboxyl methyltransferase 2 (LCMT2), mRNA.	425					tRNA processing		methyltransferase activity|protein binding			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(2)|liver(1)|lung(9)|skin(1)|urinary_tract(1)	20		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.1e-07)	L-Leucine(DB00149)	GACTCTCTGAGAGTCTTGTCA	0.488000													9	86					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117977596	117977596	+	Missense_Mutation	SNP	T	T	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:117977596T>G	uc001two.2	-	9	1583	c.1528A>C	c.(1528-1530)Agt>Cgt	p.S510R		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	Homo sapiens kinase suppressor of ras 2 (KSR2), mRNA.	539	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			NS(1)|breast(3)|central_nervous_system(2)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(12)|lung(25)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	67	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGCGTGGCACTAGGAGGGAGG	0.642000													8	65					0	0	1	0	0
NEK1	4750	broad.mit.edu	37	4	170482702	170482702	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr4:170482702C>A	uc003isd.2	-	15	1773	c.1195G>T	c.(1195-1197)Gaa>Taa	p.E399*	NEK1_uc003ise.2_Nonsense_Mutation_p.E399*|NEK1_uc003isb.2_Nonsense_Mutation_p.E399*|NEK1_uc003isc.2_Nonsense_Mutation_p.E399*|NEK1_uc003isf.2_Intron|NEK1_uc003isg.1_Nonsense_Mutation_p.E320*	NM_001199397	NP_001186326	Q96PY6	NEK1_HUMAN	Homo sapiens NIMA (never in mitosis gene a)-related kinase 1 (NEK1), transcript variant 1, mRNA.	399					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(1)|breast(3)|endometrium(3)|kidney(2)|large_intestine(13)|lung(18)|ovary(2)|prostate(2)|stomach(1)	45		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		TTTATTCTTTCCAACTTTGGG	0.333000													6	43					0	0	1	0	0
RAF1	5894	broad.mit.edu	37	3	12632413	12632413	+	Silent	SNP	T	T	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr3:12632413T>G	uc003bxf.4	-	11	1669	c.1254A>C	c.(1252-1254)gcA>gcC	p.A418A	RAF1_uc011aut.2_Silent_p.A203A|RAF1_uc011auu.2_Silent_p.A336A	NM_002880	NP_002871	P04049	RAF1_HUMAN	Homo sapiens v-raf-1 murine leukemia viral oncogene homolog 1 (RAF1), mRNA.	418	Protein kinase.				Ras protein signal transduction|activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|RAF1/DAZL(2)|SRGAP3/RAF1(6)	biliary_tract(1)|endometrium(4)|kidney(3)|large_intestine(9)|liver(1)|lung(7)|ovary(1)|pancreas(1)|prostate(2)|stomach(2)|upper_aerodigestive_tract(1)	32					Sorafenib(DB00398)	GGGTCACAATTGCCAGGTTGT	0.532000			T	SRGAP3	pilocytic astrocytoma				Noonan syndrome				11	99					0	0	1	0	0
PDZRN3	23024	broad.mit.edu	37	3	73450103	73450103	+	Silent	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr3:73450103C>T	uc003dpl.1	-	4	1320	c.1224G>A	c.(1222-1224)caG>caA	p.Q408Q	PDZRN3_uc011bgh.1_Silent_p.Q65Q|PDZRN3_uc010hoe.1_Silent_p.Q106Q|PDZRN3_uc011bgf.1_Silent_p.Q125Q|PDZRN3_uc011bgg.1_Silent_p.Q128Q	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	Homo sapiens PDZ domain containing ring finger 3 (PDZRN3), mRNA.	408							ubiquitin-protein ligase activity|zinc ion binding			breast(2)|central_nervous_system(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(13)|lung(31)|ovary(4)|pancreas(2)|prostate(2)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	69		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TGTCCATCTCCTGATGGATGT	0.438000													14	98					0	0	1	0	0
CDK12	51755	broad.mit.edu	37	17	37667841	37667841	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr17:37667841G>A	uc010cvv.3	+	7	3312	c.2726G>A	c.(2725-2727)gGa>gAa	p.G909E	CDK12_uc010wef.1_Missense_Mutation_p.G908E|CDK12_uc002hrw.4_Missense_Mutation_p.G909E	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Homo sapiens cyclin-dependent kinase 12 (CDK12), transcript variant 1, mRNA.	909	Protein kinase.				RNA splicing|mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|RNA polymerase II carboxy-terminal domain kinase activity|cyclin-dependent protein kinase activity|protein binding	p.G909R(1)		NS(4)|breast(3)|endometrium(5)|kidney(4)|large_intestine(11)|lung(23)|ovary(11)|prostate(4)|skin(2)|urinary_tract(3)	70						CTACTGCTAGGAGAGGAACGT	0.398000			"""Mis, N, F"""		serous ovarian					TCGA Ovarian(9;0.13)			8	54					0	0	1	0	0
abParts	0	broad.mit.edu	37	22	22663087	22663087	+	RNA	SNP	A	A	G	rs1054158		TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr22:22663087A>G	uc021wml.1	+	30		c.2445A>G			abParts_uc011aiq.1_Non-coding_Transcript|abParts_uc011aip.2_Non-coding_Transcript|abParts_uc010gto.3_Non-coding_Transcript					Parts of antibodies, mostly variable regions.																		GCTGCCACATAAGTTGTCCTT	0.303000													3	21					0	0	1	0	0
GPLD1	2822	broad.mit.edu	37	6	24446015	24446015	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr6:24446015C>T	uc003ned.1	-	18	1976	c.1865G>A	c.(1864-1866)gGg>gAg	p.G622E		NM_001503	NP_001494	P80108	PHLD_HUMAN	Homo sapiens glycosylphosphatidylinositol specific phospholipase D1 (GPLD1), transcript variant 1, mRNA.	622						extracellular region	glycosylphosphatidylinositol phospholipase D activity			breast(3)|endometrium(5)|kidney(1)|large_intestine(11)|lung(8)|ovary(2)|prostate(1)|urinary_tract(1)	32						ATACACCCTCCCAAGGCTCTT	0.537000													8	103					0	0	1	0	0
OR8S1	341568	broad.mit.edu	37	12	48920026	48920026	+	Silent	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:48920026C>T	uc010slu.2	+	0	612	c.612C>T	c.(610-612)ctC>ctT	p.L204L		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	Homo sapiens olfactory receptor, family 8, subfamily S, member 1 (OR8S1), mRNA.	204					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(11)|skin(4)	22						GCTCCACTCTCCTACATGGGC	0.507000													8	67					0	0	1	0	0
RPSA	3921	broad.mit.edu	37	19	24010294	24010294	+	Missense_Mutation	SNP	C	C	G			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr19:24010294C>G	uc002nrn.3	+	3	754	c.331C>G	c.(331-333)Cag>Gag	p.Q111E		NM_002295	NP_002286	P08865	RSSA_HUMAN	Homo sapiens ribosomal protein SA (RPSA), transcript variant 1, mRNA.	111	Interaction with PPP1R16B.				cell adhesion|endocrine pancreas development|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|rRNA export from nucleus|ribosomal small subunit assembly|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleus|plasma membrane	protein binding|receptor activity|ribosome binding|structural constituent of ribosome	p.Q111E(12)		endometrium(1)|large_intestine(1)|lung(3)|prostate(1)|upper_aerodigestive_tract(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.0509)|Kidney(284;0.064)		CTTCACTAACCAGATCCAGGC	0.567000													3	43					0	0	1	0	0
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	T	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr20:29628243T>C	uc010ztl.1	+	2	187	c.155T>C	c.(154-156)tTg>tCg	p.L52S	FRG1B_uc002wvm.1_Non-coding_Transcript|FRG1B_uc010ztj.1_Non-coding_Transcript|FRG1B_uc010gdr.1_Non-coding_Transcript|FRG1B_uc010ztk.1_Missense_Mutation_p.L4S					Homo sapiens FSHD region gene 1 family, member B (FRG1B), non-coding RNA.									p.L82S(2)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGGCTTTGTTGGCCTCAAAT	0.363000													4	141					0	0	1	0	0
LPPR4	9890	broad.mit.edu	37	1	99772408	99772408	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr1:99772408G>A	uc001dse.3	+	6	2292	c.2134G>A	c.(2134-2136)Gaa>Aaa	p.E712K	LPPR4_uc010oue.2_Missense_Mutation_p.E654K	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	Homo sapiens lipid phosphate phosphatase-related protein type 4 (LPPR4), transcript variant 1, mRNA.	712							phosphatidate phosphatase activity	p.S711R(2)		endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(17)|lung(39)|ovary(3)|prostate(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	72		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		AGAGGGCAGCGAAATTGGCTC	0.522000													4	37					0	0	1	0	0
OR4C13	283092	broad.mit.edu	37	11	49974801	49974801	+	Missense_Mutation	SNP	T	T	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr11:49974801T>A	uc010rhz.2	+	0	859	c.827T>A	c.(826-828)aTa>aAa	p.I276K		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	Homo sapiens olfactory receptor, family 4, subfamily C, member 13 (OR4C13), mRNA.	276					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.M275I(1)		autonomic_ganglia(1)|endometrium(1)|kidney(1)|large_intestine(5)|lung(24)|ovary(2)|prostate(2)|skin(6)|upper_aerodigestive_tract(1)	43						TACACTATGATAACTTCTATG	0.358000													8	69					0	0	1	0	0
X97876	0	broad.mit.edu	37	9	66499904	66499904	+	Silent	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr9:66499904C>T	uc004aee.1	+	0	714	c.714C>T	c.(712-714)ggC>ggT	p.G238G	X97876_uc004aed.1_Non-coding_Transcript					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).																		ACATGAAGGGCGGGTAACCTG	0.542000													4	18					0	0	1	0	0
AK5	26289	broad.mit.edu	37	1	77763264	77763264	+	Missense_Mutation	SNP	G	G	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr1:77763264G>C	uc001dhn.3	+	3	773	c.436G>C	c.(436-438)Ggt>Cgt	p.G146R	AK5_uc001dho.3_Missense_Mutation_p.G120R|AK5_uc001dhm.2_Missense_Mutation_p.G122R	NM_174858	NP_036225	Q9Y6K8	KAD5_HUMAN	Homo sapiens adenylate kinase 5 (AK5), transcript variant 1, mRNA.	146					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	ATP binding|adenylate kinase activity|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(27)|prostate(1)|skin(2)|stomach(1)	40						AAGTGGAAAGGGTACTCAGAG	0.388000													17	101					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117723067	117723067	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:117723067G>A	uc001twn.2	-	6	2072	c.1361C>T	c.(1360-1362)gCc>gTc	p.A454V	NOS1_uc021ren.1_Missense_Mutation_p.A118V|NOS1_uc021reo.1_Missense_Mutation_p.A118V|NOS1_uc001twm.2_Missense_Mutation_p.A454V	NM_001204218	NP_001191147	P29475	NOS1_HUMAN	Homo sapiens nitric oxide synthase 1 (neuronal) (NOS1), transcript variant 2, mRNA.	454					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	FMN binding|NADP binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|heme binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			NS(1)|breast(1)|central_nervous_system(3)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(17)|large_intestine(21)|lung(43)|ovary(3)|pancreas(1)|prostate(6)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	117	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TTTGTTGGTGGCATACTTGAC	0.552000													3	32					0	0	1	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73205333	73205333	+	Missense_Mutation	SNP	G	G	A			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr4:73205333G>A	uc003hgk.2	-	4	776	c.739C>T	c.(739-741)Cgc>Tgc	p.R247C		NM_014243	NP_055058	O15072	ATS3_HUMAN	Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 3 (ADAMTS3), mRNA.	247	Poly-Arg.				collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding	p.R247C(2)		NS(1)|breast(2)|cervix(1)|endometrium(5)|kidney(6)|large_intestine(21)|lung(33)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	76			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGTCTGCGGCGTCTCATTGTT	0.483000													24	197					0	0	1	0	0
LOC100233156	100233156	broad.mit.edu	37	GL000218.1	39913	39913	+	Missense_Mutation	SNP	C	C	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chrGL000218.1:39913C>T	uc011mfn.2	-	3	493	c.404G>A	c.(403-405)cGg>cAg	p.R135Q	LOC100233156_uc003jah.2_Missense_Mutation_p.R135Q					Homo sapiens tektin 4 pseudogene (LOC100233156), transcript variant 1, non-coding RNA.																		CATGTTGGGCCGGTGTGAGAG	0.622000													18	37					0	0	1	0	0
CDK12	51755	broad.mit.edu	37	17	37618973	37618973	+	Nonsense_Mutation	SNP	A	A	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr17:37618973A>T	uc010cvv.3	+	0	1235	c.649A>T	c.(649-651)Aaa>Taa	p.K217*	CDK12_uc010wef.1_Nonsense_Mutation_p.K217*|CDK12_uc002hrw.4_Nonsense_Mutation_p.K217*	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Homo sapiens cyclin-dependent kinase 12 (CDK12), transcript variant 1, mRNA.	217					RNA splicing|mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|RNA polymerase II carboxy-terminal domain kinase activity|cyclin-dependent protein kinase activity|protein binding			NS(4)|breast(3)|endometrium(5)|kidney(4)|large_intestine(11)|lung(23)|ovary(11)|prostate(4)|skin(2)|urinary_tract(3)	70						GGACAGCCCAAAACGGAGATC	0.502000			"""Mis, N, F"""		serous ovarian					TCGA Ovarian(9;0.13)			11	98					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027275	37027275	+	Missense_Mutation	SNP	G	G	T			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chrX:37027275G>T	uc004ddl.2	+	0	844	c.792G>T	c.(790-792)gaG>gaT	p.E264D		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	Homo sapiens family with sequence similarity 47, member C (FAM47C), mRNA.	264										breast(4)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(15)|lung(63)|ovary(6)|pancreas(1)|prostate(6)|skin(8)|upper_aerodigestive_tract(4)|urinary_tract(1)	120						AGCCTCCCGAGACTGGAGTGT	0.612000													9	58					0	0	1	0	0
ZSCAN30	100101467	broad.mit.edu	37	18	32833679	32833679	+	Missense_Mutation	SNP	T	T	C			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr18:32833679T>C	uc002kyl.3	-	4	1676	c.1220A>G	c.(1219-1221)cAc>cGc	p.H407R	ZNF397_uc002kyj.3_Intron|ZNF397_uc010dmq.3_Intron|ZNF397_uc010dmr.3_Intron|ZSCAN30_uc002kym.3_Missense_Mutation_p.H407R	NM_001166012	NP_001159484	Q86W11	ZSC30_HUMAN	Homo sapiens zinc finger and SCAN domain containing 30 (ZSCAN30), mRNA.	407					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(5)|lung(3)|urinary_tract(1)	9						ATCTCCAGTGTGAATTTTCTT	0.433000													3	67					0	0	1	0	0
ESPN	83715	broad.mit.edu	37	1	6500486	6500486	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr1:6500486delG	uc001amy.3	+	2	829	c.661delG	c.(661-663)gtcfs	p.V221fs		NM_031475	NP_113663	B1AK53	ESPN_HUMAN	Homo sapiens espin (ESPN), mRNA.	221					sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	SH3 domain binding|actin filament binding			NS(1)|breast(2)|cervix(1)|kidney(1)|large_intestine(2)|lung(7)|ovary(1)|prostate(1)|skin(1)	17	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		CCACAGCCCAGTCATCGTGTG	0.756													2	4	---	---	---	---					
RPTN	126638	broad.mit.edu	37	1	152128169	152128172	+	Frame_Shift_Del	DEL	TGTC	TGTC	-			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr1:152128169_152128172delTGTC	uc001ezs.1	-	2	1468_1471	c.1403_1406delGACA	c.(1402-1407)agacaafs	p.R468fs		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	Homo sapiens repetin (RPTN), mRNA.	468	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding			breast(2)|central_nervous_system(1)|endometrium(14)|kidney(2)|large_intestine(1)|lung(32)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	59						ACTCTGGCCTTGTCTGTCTGTCTG	0.500													8	1029	---	---	---	---					
FNBP4	23360	broad.mit.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	GGTGGT	-	rs59413596		TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr11:47788664_47788669delGGTGGT	uc009ylv.3	-	0	325_330	c.172_177delACCACC	c.(172-177)accaccdel	p.TT58del	FNBP4_uc001ngj.3_5'UTR|FNBP4_uc001ngl.2_Non-coding_Transcript	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	Homo sapiens formin binding protein 4 (FNBP4), mRNA.	58								p.T58_T59delTT(6)		NS(1)|breast(2)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(6)|lung(12)|ovary(3)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	44						CAGTCACCGCGGTGGTGGTGGTCGTC	0.748													3	5	---	---	---	---					
CHD4	1108	broad.mit.edu	37	12	6711145	6711147	+	In_Frame_Del	DEL	TCC	TCC	-	rs71584865	byFrequency	TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr12:6711145_6711147delTCC	uc001qpo.3	-	3	581_583	c.417_419delGGA	c.(415-420)gaggat>gat	p.E139del	CHD4_uc001qpn.3_In_Frame_Del_p.E132del|CHD4_uc001qpp.3_In_Frame_Del_p.E136del	NM_001273	NP_001264	Q14839	CHD4_HUMAN	Homo sapiens chromodomain helicase DNA binding protein 4 (CHD4), mRNA.	139	Poly-Asp.		E -> D (in dbSNP:rs1639122).		chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	NuRD complex|microtubule organizing center	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ATCATCATCAtcctcctcctcct	0.453													7	57	---	---	---	---					
RNASEH2B	79621	broad.mit.edu	37	13	51530586	51530587	+	Frame_Shift_Ins	INS	-	-	A	rs75254367		TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr13:51530586_51530587insA	uc001vfa.4	+	10	1314_1315	c.915_916insA	c.(913-918)aataaafs	p.N305fs	RNASEH2B_uc001vfb.4_Intron	NM_024570	NP_078846	Q5TBB1	RNH2B_HUMAN	Homo sapiens ribonuclease H2, subunit B (RNASEH2B), transcript variant 1, mRNA.	305					RNA catabolic process	nucleus|ribonuclease H2 complex				endometrium(2)|liver(1)|lung(1)|upper_aerodigestive_tract(1)	5		Acute lymphoblastic leukemia(7;1.03e-07)|Breast(56;0.00122)|Lung NSC(96;0.00143)|Prostate(109;0.0047)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;9e-08)		GGGTAAAAAATAAAAAAAAAAT	0.297													4	8	---	---	---	---					
ZIC5	85416	broad.mit.edu	37	13	100623637	100623637	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HC-A6HX-01A-11D-A31L-08	TCGA-HC-A6HX-10A-01D-A31J-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c58837d2-3931-4d77-87bd-24dbb7517c19	7c56bd41-657a-4710-a03e-7fd4e035847b	g.chr13:100623637delT	uc001vom.1	-	0	542	c.293delA	c.(292-294)cagfs	p.Q98fs		NM_033132	NP_149123	Q96T25	ZIC5_HUMAN	Homo sapiens Zic family member 5 (ZIC5), mRNA.	98					cell differentiation	nucleus	DNA binding|zinc ion binding			endometrium(3)|kidney(1)|lung(2)|prostate(1)|skin(2)	9	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CGTGCTCGCCTGGGCCATGTG	0.771													2	4	---	---	---	---					
