Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
AJAP1	55966	broad.mit.edu	37	1	4772679	4772679	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:4772679T>G	uc001alm.1	+	2	1130	c.749T>G	c.(748-750)GTT>GGT	p.V250G	AJAP1_uc001aln.2_Missense_Mutation_p.V250G	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	250	Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CCAGGTGGGGTTAGCACAACG	0.498													48	202					0	0	0.013114	0	0	
DNAJC11	55735	broad.mit.edu	37	1	6706032	6706032	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:6706032C>T	uc001aof.2	-	8	817	c.711G>A	c.(709-711)GTG>GTA	p.V237V	DNAJC11_uc010nzt.1_Silent_p.V199V|DNAJC11_uc001aog.2_Silent_p.V237V|DNAJC11_uc010nzu.1_Silent_p.V147V	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	237					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		AGTTTGTTGTCACAAAGCTGG	0.532													79	270					0	0	0.014410	0	0	
PER3	8863	broad.mit.edu	37	1	7848192	7848192	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:7848192G>C	uc001aoo.2	+	4	653	c.478G>C	c.(478-480)GAT>CAT	p.D160H	PER3_uc009vmg.1_Missense_Mutation_p.D160H|PER3_uc009vmh.1_Missense_Mutation_p.D160H|PER3_uc001aop.2_Missense_Mutation_p.D160H|PER3_uc010nzw.1_5'UTR|PER3_uc001aon.2_Missense_Mutation_p.D160H	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	160	PAS 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		TCGTAAGAAAGATGTCCTGGC	0.448													50	268					0	0	0.014410	0	0	
ENO1	2023	broad.mit.edu	37	1	8925441	8925441	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:8925441C>A	uc001apj.1	-	8	919	c.768G>T	c.(766-768)AAG>AAT	p.K256N	ENO1_uc001api.1_Missense_Mutation_p.K160N|ENO1_uc001apk.1_Missense_Mutation_p.K201N|ENO1_uc001apl.1_Missense_Mutation_p.K256N|ENO1_uc009vmi.1_Missense_Mutation_p.K213N|ENO1_uc009vmj.1_Missense_Mutation_p.K256N|ENO1_uc009vmk.1_Missense_Mutation_p.K130N|ENO1_uc009vml.1_Missense_Mutation_p.K256N	NM_001428	NP_001419	P06733	ENOA_HUMAN	enolase 1	256					gluconeogenesis|glycolysis|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|response to virus	phosphopyruvate hydratase complex|plasma membrane|sarcomere	DNA binding|magnesium ion binding|phosphopyruvate hydratase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|kidney(1)|central_nervous_system(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;2.54e-20)|all_lung(118;2.99e-06)|Lung NSC(185;6.25e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.42e-07)|COAD - Colon adenocarcinoma(227;2.78e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		CCAGGTCATACTTCCCAGACC	0.557													8	154					5.18039e-06	5.81658e-06	0.003080	1	0	
CASZ1	54897	broad.mit.edu	37	1	10713947	10713947	+	Missense_Mutation	SNP	C	A	A	rs139467760		TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:10713947C>A	uc001aro.2	-	11	2487	c.2167G>T	c.(2167-2169)GAC>TAC	p.D723Y	CASZ1_uc001arp.1_Missense_Mutation_p.D723Y|CASZ1_uc009vmx.2_Missense_Mutation_p.D747Y	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	723					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		ACAAGGTCGTCGTTGCTGGAC	0.692													135	248					6.8322e-46	8.60185e-46	0.014410	1	0	
VPS13D	55187	broad.mit.edu	37	1	12418626	12418626	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:12418626A>G	uc001atv.2	+	50	10251	c.10110A>G	c.(10108-10110)CAA>CAG	p.Q3370Q	VPS13D_uc001atw.2_Silent_p.Q3345Q|VPS13D_uc001atx.2_Silent_p.Q2557Q	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3369					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TCATCCAGCAAGGAAACCGCC	0.547													22	114					0	0	0.010504	0	0	
PRAMEF11	440560	broad.mit.edu	37	1	12887510	12887510	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:12887510T>C	uc001auk.2	-	3	543	c.347A>G	c.(346-348)AAG>AGG	p.K116R		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	116											0						AGTCCTGTTCTTGAGCCAAAG	0.483													16	754					0	0	0.012319	0	0	
SPEN	23013	broad.mit.edu	37	1	16260874	16260874	+	Silent	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:16260874C>A	uc001axk.1	+	11	8343	c.8139C>A	c.(8137-8139)GCC>GCA	p.A2713A	SPEN_uc010obp.1_Silent_p.A2672A	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2713	Interaction with RBPSUH (By similarity).				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CAGTGAACGCCACGGTGGGCA	0.592													42	133					1.06522e-23	1.29855e-23	0.013114	1	0	
NBPF1	55672	broad.mit.edu	37	1	16914255	16914255	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:16914255C>T	uc009vos.1	-	10	1419	c.531G>A	c.(529-531)GAG>GAA	p.E177E	NBPF1_uc009vot.1_5'Flank|NBPF1_uc001ayz.1_5'Flank|NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	177	NBPF 1.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTCAGCCTCCTCAACTTGAA	0.438													49	606					0	0	0.014410	0	0	
CELA3A	10136	broad.mit.edu	37	1	22329520	22329520	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:22329520C>T	uc001bfl.2	+	2	87	c.68C>T	c.(67-69)TCT>TTT	p.S23F	CELA3B_uc009vqf.2_Intron	NM_005747	NP_005738	P09093	CEL3A_HUMAN	elastase 3A, pancreatic preproprotein	23					cholesterol metabolic process|digestion|proteolysis		serine-type endopeptidase activity			haematopoietic_and_lymphoid_tissue(1)	1						CCACCTTCCTCTCACTCTTCC	0.532													61	498					0	0	0.014410	0	0	
EIF2C4	192670	broad.mit.edu	37	1	36297664	36297664	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:36297664A>C	uc001bzj.1	+	10	1313	c.1123A>C	c.(1123-1125)AGC>CGC	p.S375R		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	375					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTAGGTGAAGAGCAACAGTAT	0.423													71	235					0	0	0.014410	0	0	
B4GALT2	8704	broad.mit.edu	37	1	44450633	44450633	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:44450633G>A	uc001clg.2	+	4	1016	c.646G>A	c.(646-648)GAT>AAT	p.D216N	B4GALT2_uc001clh.2_Missense_Mutation_p.D150N|B4GALT2_uc010okl.1_Missense_Mutation_p.D245N|B4GALT2_uc001cli.2_Missense_Mutation_p.D216N	NM_003780	NP_003771	O60909	B4GT2_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	216	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			N-Acetyl-D-glucosamine(DB00141)	CATCTTCAGCGATGTGGACCT	0.592													20	72					0	0	0.012319	0	0	
GPR61	83873	broad.mit.edu	37	1	110085853	110085853	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:110085853C>T	uc001dxy.2	+	2	892	c.209C>T	c.(208-210)ACG>ATG	p.T70M		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	70	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		ATCGCCAAGACGCCTGCCCTC	0.607													47	161					0	0	0.014410	0	0	
CHI3L2	1117	broad.mit.edu	37	1	111773550	111773550	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:111773550A>G	uc001eam.2	+	3	328	c.257A>G	c.(256-258)AAC>AGC	p.N86S	CHI3L2_uc001ean.2_Missense_Mutation_p.N76S|CHI3L2_uc001eao.2_Missense_Mutation_p.N7S|CHI3L2_uc009wga.2_Missense_Mutation_p.N7S	NM_004000	NP_003991	Q15782	CH3L2_HUMAN	chitinase 3-like 2 isoform a	86					chitin catabolic process	extracellular space	cation binding|chitinase activity			central_nervous_system(1)	1		all_cancers(81;1.89e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0171)|Colorectal(144;0.0387)|all cancers(265;0.0464)|LUSC - Lung squamous cell carcinoma(189;0.0872)|Epithelial(280;0.0994)|COAD - Colon adenocarcinoma(174;0.141)		CAGACCATCAACAGTCTCAAA	0.448													14	31					0	0	0.003163	0	0	
LCE3D	84648	broad.mit.edu	37	1	152552306	152552306	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:152552306C>A	uc001fab.2	-	2	164	c.107G>T	c.(106-108)GGC>GTC	p.G36V		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	36					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		TGGGGCACAGCCAGAGGAAGC	0.662													38	188					1.49673e-21	1.81881e-21	0.006230	1	0	
RAB13	5872	broad.mit.edu	37	1	153958684	153958684	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:153958684T>G	uc001fdt.1	-	1	123	c.29A>C	c.(28-30)AAG>ACG	p.K10T	RAB13_uc001fdu.1_Missense_Mutation_p.K10T	NM_002870	NP_002861	P51153	RAB13_HUMAN	RAB13, member RAS oncogene family	10					cell adhesion|protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	cytoplasmic vesicle membrane|tight junction	GTP binding|GTPase activity				0	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CAGCAGCAACTTGAAGAGGTG	0.617													4	24					0	0	0.001984	0	0	
ASH1L	55870	broad.mit.edu	37	1	155448757	155448757	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:155448757G>A	uc009wqq.2	-	3	4384	c.3904C>T	c.(3904-3906)CGG>TGG	p.R1302W	ASH1L_uc001fkt.2_Missense_Mutation_p.R1302W|ASH1L_uc009wqr.1_Missense_Mutation_p.R1302W	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1302					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TGAGTGATCCGAATTTCACTT	0.398													52	197					0	0	0.014410	0	0	
GPATCH4	54865	broad.mit.edu	37	1	156567853	156567853	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:156567853T>G	uc001fpm.2	-	5	361	c.322A>C	c.(322-324)AAC>CAC	p.N108H	GPATCH4_uc001fpl.2_Missense_Mutation_p.N103H	NM_015590	NP_056405	Q5T3I0	GPTC4_HUMAN	G patch domain containing 4 isoform 1	103						intracellular	nucleic acid binding			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TACAGCAAGTTGGGCTTGGGA	0.463													20	303					0	0	0.004656	0	0	
FCRL4	83417	broad.mit.edu	37	1	157557239	157557239	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:157557239A>C	uc001fqw.2	-	5	810	c.674T>G	c.(673-675)CTT>CGT	p.L225R	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	225	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GTTGAAGTGAAGTGGGGTGTC	0.532													14	534					0	0	0.003163	0	0	
SPTA1	6708	broad.mit.edu	37	1	158590112	158590112	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:158590112A>T	uc001fst.1	-	44	6464	c.6265T>A	c.(6265-6267)TTG>ATG	p.L2089M		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2089	Spectrin 20.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGGGAGGCCAAGAAGTCCTCA	0.493													15	106					0	0	0.003163	0	0	
PPOX	5498	broad.mit.edu	37	1	161140706	161140706	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:161140706C>A	uc001fyj.2	+	12	1548	c.1258C>A	c.(1258-1260)CCC>ACC	p.P420T	PPOX_uc001fyn.2_Missense_Mutation_p.P128T|PPOX_uc001fyg.2_Missense_Mutation_p.P420T|PPOX_uc001fyl.2_Missense_Mutation_p.P386T|PPOX_uc001fym.2_RNA|PPOX_uc001fyk.2_Missense_Mutation_p.P258T|PPOX_uc001fyh.2_Missense_Mutation_p.P258T|PPOX_uc010pkg.1_Missense_Mutation_p.P258T|PPOX_uc009wuc.1_Missense_Mutation_p.P221T|PPOX_uc010pkh.1_Intron|PPOX_uc001fyi.2_Intron	NM_001122764	NP_001116236	P50336	PPOX_HUMAN	protoporphyrinogen oxidase	420					heme biosynthetic process	intrinsic to mitochondrial inner membrane|mitochondrial intermembrane space	flavin adenine dinucleotide binding|oxygen-dependent protoporphyrinogen oxidase activity			ovary(1)	1	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GAACTGCATTCCCCAGTATAC	0.473									Porphyria_Variegata				71	275					4.75426e-39	5.92738e-39	0.014410	1	0	
OLFML2B	25903	broad.mit.edu	37	1	161967729	161967729	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:161967729G>A	uc001gbu.2	-	6	1784	c.1360C>T	c.(1360-1362)CCC>TCC	p.P454S	OLFML2B_uc010pkq.1_Missense_Mutation_p.P455S	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	454										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			ACTGTGGTGGGAGGCACTGGG	0.617													39	168					0	0	0.009718	0	0	
BLZF1	8548	broad.mit.edu	37	1	169349731	169349731	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:169349731T>A	uc001gfx.1	+	5	1118	c.681T>A	c.(679-681)GAT>GAA	p.D227E	BLZF1_uc001gfy.2_Missense_Mutation_p.D227E|BLZF1_uc009wvp.1_Missense_Mutation_p.D204E	NM_003666	NP_003657	Q9H2G9	GO45_HUMAN	basic leucine zipper nuclear factor 1	227					cell proliferation|Golgi organization|Golgi to plasma membrane protein transport|regulation of cell growth|regulation of transcription from RNA polymerase II promoter	Golgi lumen|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding			skin(1)	1	all_hematologic(923;0.208)					TAATGGCAGATGAGTTAACCA	0.368													38	81					0	0	0.006999	0	0	
PAPPA2	60676	broad.mit.edu	37	1	176661333	176661333	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:176661333C>T	uc001gkz.2	+	6	3667	c.2503C>T	c.(2503-2505)CAG>TAG	p.Q835*	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	835					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCTAGTCTATCAGCAGTGGAC	0.502													72	300					0	0	0.014410	0	0	
FAM5C	339479	broad.mit.edu	37	1	190067498	190067498	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:190067498A>C	uc001gse.1	-	8	2183	c.1951T>G	c.(1951-1953)TTT>GTT	p.F651V	FAM5C_uc010pot.1_Missense_Mutation_p.F549V	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	651						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GGGTCAATAAACTCCAGAGGT	0.428													58	202					0	0	0.014410	0	0	
NR5A2	2494	broad.mit.edu	37	1	200008793	200008793	+	Silent	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:200008793G>C	uc001gvb.2	+	2	278	c.72G>C	c.(70-72)GGG>GGC	p.G24G	NR5A2_uc001gvc.2_Intron|NR5A2_uc009wzh.2_5'UTR|NR5A2_uc010pph.1_5'Flank|NR5A2_uc009wzg.1_RNA	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	24					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					CAGGTGCTGGGCTTCCGGACC	0.667													6	214					0	0	0.001984	0	0	
SUSD4	55061	broad.mit.edu	37	1	223438057	223438057	+	Silent	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:223438057T>C	uc001hnx.2	-	4	1273	c.639A>G	c.(637-639)GGA>GGG	p.G213G	SUSD4_uc001hny.3_Silent_p.G213G|SUSD4_uc010puw.1_Silent_p.G53G|SUSD4_uc001hnz.2_Silent_p.G213G|SUSD4_uc010pux.1_Silent_p.G142G	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	213	Sushi 3.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		CAAGTTTAAATCCGGGAAAGC	0.512													47	246					0	0	0.014410	0	0	
LBR	3930	broad.mit.edu	37	1	225594439	225594439	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:225594439G>C	uc001hoy.2	-	11	1553	c.1410C>G	c.(1408-1410)TTC>TTG	p.F470L	LBR_uc001hoz.2_Missense_Mutation_p.F470L|LBR_uc001hpa.1_Missense_Mutation_p.F470L	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	470					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		AAAAGGCTTGGAAGCTGTAAA	0.398													46	125					0	0	0.014410	0	0	
OR2T6	254879	broad.mit.edu	37	1	248551054	248551054	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:248551054A>T	uc001iei.1	+	1	145	c.145A>T	c.(145-147)ATT>TTT	p.I49F		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GATCTTCCTGATTAACATAGA	0.473													7	185					0	0	0.003080	0	0	
OR2T3	343173	broad.mit.edu	37	1	248637452	248637452	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr1:248637452G>A	uc001iel.1	+	1	801	c.801G>A	c.(799-801)CCG>CCA	p.P267P		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACATGCTCCCGAGTTCCTACC	0.547													58	836					0	0	0.014410	0	0	
CUBN	8029	broad.mit.edu	37	10	16911646	16911646	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:16911646C>T	uc001ioo.2	-	59	9495	c.9443G>A	c.(9442-9444)CGG>CAG	p.R3148Q	CUBN_uc009xjq.1_RNA|CUBN_uc009xjr.1_Missense_Mutation_p.R504Q	NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3148	CUB 23.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CAATGTCTGCCGGAAAGACAT	0.468													21	465					0	0	0.010504	0	0	
MRC1	4360	broad.mit.edu	37	10	18196558	18196558	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:18196558G>A	uc001ipm.2	+	28	4112	c.4009G>A	c.(4009-4011)GCG>ACG	p.A1337T		NM_002438	NP_002429	P22897	MRC1_HUMAN	mannose receptor C type 1 precursor	1337	Extracellular (Potential).|C-type lectin 8.				receptor-mediated endocytosis	endosome membrane|integral to plasma membrane	mannose binding|receptor activity				0						AGCTTTACATGCGTCTTCTGG	0.413													51	145					0	0	0.014410	0	0	
SLC39A12	221074	broad.mit.edu	37	10	18270258	18270258	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:18270258G>T	uc001ipo.2	+	6	1215	c.942G>T	c.(940-942)AGG>AGT	p.R314S	SLC39A12_uc001ipn.2_Missense_Mutation_p.R314S|SLC39A12_uc001ipp.2_Missense_Mutation_p.R314S|SLC39A12_uc010qck.1_Missense_Mutation_p.R180S	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	314	Cytoplasmic (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TCTCTGCTAGGCAGCTGGTGG	0.448													25	121					6.32553e-13	7.54349e-13	0.004656	1	0	
MLLT10	8028	broad.mit.edu	37	10	22002749	22002749	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:22002749C>T	uc001iqs.2	+	15	2144	c.1796C>T	c.(1795-1797)TCT>TTT	p.S599F	MLLT10_uc001iqt.2_Missense_Mutation_p.S583F|MLLT10_uc001iqv.2_RNA|MLLT10_uc001iqy.2_Missense_Mutation_p.S583F|MLLT10_uc001ira.2_Missense_Mutation_p.S40F|MLLT10_uc001irb.2_RNA	NM_004641	NP_004632	P55197	AF10_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	599	DNA-binding.				positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(1)|skin(1)	2						AATGTAGTATCTGGCTCGGGA	0.413			T	MLL|PICALM|CDK6	AL								7	288					0	0	0.003080	0	0	
ANKRD30A	91074	broad.mit.edu	37	10	37421247	37421247	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:37421247A>C	uc001iza.1	+	4	521	c.422A>C	c.(421-423)AAT>ACT	p.N141T		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	197	ANK 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAAAATGCAAATGCGAATGCA	0.299													4	100					0	0	0.009096	0	0	
ZNF37A	7587	broad.mit.edu	37	10	38407159	38407159	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:38407159T>G	uc001izk.2	+	8	1899	c.1080T>G	c.(1078-1080)TGT>TGG	p.C360W	ZNF37A_uc001izl.2_Missense_Mutation_p.C360W|ZNF37A_uc001izm.2_Missense_Mutation_p.C360W	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a	360	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						GTCATGAATGTGGGAAAACCT	0.428													30	162					0	0	0.010818	0	0	
ZNF37A	7587	broad.mit.edu	37	10	38407163	38407163	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:38407163A>G	uc001izk.2	+	8	1903	c.1084A>G	c.(1084-1086)AAA>GAA	p.K362E	ZNF37A_uc001izl.2_Missense_Mutation_p.K362E|ZNF37A_uc001izm.2_Missense_Mutation_p.K362E	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a	362	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						TGAATGTGGGAAAACCTTCTC	0.423													28	157					0	0	0.007291	0	0	
MYST4	23522	broad.mit.edu	37	10	76788893	76788893	+	Silent	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:76788893C>A	uc001jwn.1	+	18	4804	c.4311C>A	c.(4309-4311)GCC>GCA	p.A1437A	MYST4_uc001jwo.1_Silent_p.A1145A|MYST4_uc001jwp.1_Silent_p.A1254A	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1437					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TGGAGTCTGCCGAAGTGGAGA	0.507			T	CREBBP	AML								4	105					0.00024832	0.000275592	0.009096	1	0	
DLG5	9231	broad.mit.edu	37	10	79566548	79566548	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:79566548C>G	uc001jzk.2	-	26	5005	c.4935G>C	c.(4933-4935)AAG>AAC	p.K1645N	DLG5_uc001jzi.2_Missense_Mutation_p.K400N|DLG5_uc001jzj.2_Missense_Mutation_p.K1060N|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1645	SH3.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			CGCGCTGGATCTTCTGGGCAT	0.607													44	115					0	0	0.014410	0	0	
MINPP1	9562	broad.mit.edu	37	10	89272968	89272968	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:89272968A>T	uc001keu.2	+	3	1373	c.923A>T	c.(922-924)GAT>GTT	p.D308V	MINPP1_uc009xtf.1_Intron|MINPP1_uc001kev.2_Intron	NM_004897	NP_004888	Q9UNW1	MINP1_HUMAN	multiple inositol polyphosphate histidine	308					bone mineralization|polyphosphate metabolic process	endoplasmic reticulum lumen	acid phosphatase activity|bisphosphoglycerate 3-phosphatase activity|multiple inositol-polyphosphate phosphatase activity|phosphohistidine phosphatase activity			urinary_tract(1)	1		Colorectal(252;0.122)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00123)		TTTGACATAGATGATGCAAAG	0.328													44	115					0	0	0.009718	0	0	
PPP1R3C	5507	broad.mit.edu	37	10	93389974	93389974	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:93389974A>G	uc001kho.2	-	2	796	c.664T>C	c.(664-666)TTA>CTA	p.L222L		NM_005398	NP_005389	Q9UQK1	PPR3C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	222	Interaction with EPM2A.|CBM21.						protein serine/threonine phosphatase activity			breast(1)	1		Colorectal(252;0.235)				ACAGGGGGTAAGTCAATGGCA	0.398													42	151					0	0	0.014410	0	0	
SLIT1	6585	broad.mit.edu	37	10	98806446	98806446	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:98806446G>A	uc001kmw.2	-	18	2070	c.1818C>T	c.(1816-1818)AGC>AGT	p.S606S	SLIT1_uc009xvh.1_Silent_p.S616S	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	606	LRR 14.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GGAACATGCCGCTCCGGATGG	0.617													16	32					0	0	0.007413	0	0	
TMEM180	79847	broad.mit.edu	37	10	104230737	104230737	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:104230737C>G	uc001kvt.2	+	5	786	c.567C>G	c.(565-567)TTC>TTG	p.F189L	TMEM180_uc001kvs.2_Intron|TMEM180_uc010qql.1_Intron|TMEM180_uc010qqm.1_Intron|TMEM180_uc001kvu.2_Missense_Mutation_p.F189L	NM_024789	NP_079065	Q14CX5	TM180_HUMAN	transmembrane protein 180	189						integral to membrane				ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		AGGAGGATTTCTCCTCCTTCC	0.622													55	179					0	0	0.014410	0	0	
TAF5	6877	broad.mit.edu	37	10	105146935	105146935	+	Silent	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:105146935C>G	uc001kwv.2	+	9	1856	c.1833C>G	c.(1831-1833)CTC>CTG	p.L611L	TAF5_uc010qqq.1_Silent_p.L556L	NM_006951	NP_008882	Q15542	TAF5_HUMAN	TBP-associated factor 5	611	WD 3.				histone acetylation|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|transcription factor TFIID complex|transcription factor TFTC complex	protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)	2		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;1.83e-09)|all cancers(201;1.4e-08)|BRCA - Breast invasive adenocarcinoma(275;0.198)		ATAAAAGGCTCTGGGCTACAG	0.353													19	78					0	0	0.012319	0	0	
ZDHHC6	64429	broad.mit.edu	37	10	114205154	114205154	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:114205154T>C	uc001kzv.2	-	2	465	c.41A>G	c.(40-42)CAA>CGA	p.Q14R	VTI1A_uc001kzy.2_5'Flank|VTI1A_uc001kzz.2_5'Flank|ZDHHC6_uc001kzw.2_Missense_Mutation_p.Q14R|ZDHHC6_uc009xya.1_Missense_Mutation_p.Q14R|VTI1A_uc001kzx.2_5'Flank	NM_022494	NP_071939	Q9H6R6	ZDHC6_HUMAN	zinc finger, DHHC-type containing 6	14						integral to membrane	acyltransferase activity|zinc ion binding				0		Colorectal(252;0.198)		Epithelial(162;0.0291)|all cancers(201;0.117)		CTTTAATTCTTGTAGATTTTC	0.393													24	136					0	0	0.003954	0	0	
TRUB1	142940	broad.mit.edu	37	10	116735016	116735016	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:116735016C>G	uc001lcd.2	+	8	989	c.928C>G	c.(928-930)CTT>GTT	p.L310V	TRUB1_uc010qsl.1_Missense_Mutation_p.L212V	NM_139169	NP_631908	Q8WWH5	TRUB1_HUMAN	TruB pseudouridine (psi) synthase homolog 1	310					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding				0		Colorectal(252;0.09)|Breast(234;0.174)|Lung NSC(174;0.245)		Epithelial(162;0.00879)|all cancers(201;0.0243)		TTGCTCATCTCTTTTCCCAGC	0.408													78	208					0	0	0.014410	0	0	
PTPRE	5791	broad.mit.edu	37	10	129868079	129868079	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr10:129868079G>A	uc001lkb.2	+	13	1410	c.1131G>A	c.(1129-1131)ATG>ATA	p.M377I	PTPRE_uc009yat.2_Missense_Mutation_p.M388I|PTPRE_uc009yau.2_Missense_Mutation_p.M377I|PTPRE_uc001lkd.2_Missense_Mutation_p.M319I|PTPRE_uc010quq.1_Missense_Mutation_p.M278I	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	377	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				GCCCTCAGATGGTTCAAACGG	0.537											OREG0020623	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	101					0	0	0.004289	0	0	
RNH1	6050	broad.mit.edu	37	11	500634	500634	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:500634G>A	uc001lpk.1	-	2	1530	c.122C>T	c.(121-123)ACG>ATG	p.T41M	RNH1_uc001lpl.1_Missense_Mutation_p.T41M|RNH1_uc001lpm.1_Missense_Mutation_p.T41M|RNH1_uc001lpn.1_Missense_Mutation_p.T41M|RNH1_uc001lpo.1_Missense_Mutation_p.T41M|RNH1_uc009ybw.1_RNA|RNH1_uc001lpp.1_Missense_Mutation_p.T41M|RNH1_uc001lpt.1_Translation_Start_Site|RNH1_uc001lpq.1_Missense_Mutation_p.T41M|RNH1_uc001lpr.1_Missense_Mutation_p.T41M|RNH1_uc001lps.1_Missense_Mutation_p.T41M|RNH1_uc009ybx.1_Missense_Mutation_p.T41M	NM_203389	NP_976323	P13489	RINI_HUMAN	ribonuclease/angiogenin inhibitor	41	LRR 1.				mRNA catabolic process|regulation of angiogenesis	angiogenin-PRI complex|cytoplasm	protein binding|ribonuclease inhibitor activity				0		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.26e-26)|Epithelial(43;1.34e-25)|OV - Ovarian serous cystadenocarcinoma(40;5.31e-20)|BRCA - Breast invasive adenocarcinoma(625;8.01e-05)|Lung(200;0.0378)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CCGTGCTTCCGTGAGGCCACA	0.627													20	43					0	0	0.003330	0	0	
OR10A2	341276	broad.mit.edu	37	11	6891165	6891165	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:6891165C>G	uc001meu.1	+	1	180	c.180C>G	c.(178-180)TTC>TTG	p.F60L		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		AGATTGGCTTCAACCTAGTCA	0.493													62	217					0	0	0.014410	0	0	
EIF4G2	1982	broad.mit.edu	37	11	10822090	10822090	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:10822090G>C	uc001mjc.2	-	17	2166	c.1749C>G	c.(1747-1749)AGC>AGG	p.S583R	EIF4G2_uc001mjb.2_Missense_Mutation_p.S377R|EIF4G2_uc009ygf.2_Missense_Mutation_p.S377R|EIF4G2_uc001mjd.2_Missense_Mutation_p.S545R	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	583	MI.				cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		TGATTACTTTGCTTAACATCT	0.383													70	233					0	0	0.014410	0	0	
NAT10	55226	broad.mit.edu	37	11	34160817	34160817	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:34160817T>C	uc001mvk.2	+	22	2535	c.2291T>C	c.(2290-2292)CTT>CCT	p.L764P	NAT10_uc010ren.1_Missense_Mutation_p.L692P	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	764	Required for localization to the nucleolus and midbody.					nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				GGAGGCTGGCTTGCAGCCTTC	0.572													6	148					0	0	0.003080	0	0	
CAT	847	broad.mit.edu	37	11	34477709	34477709	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:34477709A>G	uc001mvm.2	+	7	946	c.863A>G	c.(862-864)CAG>CGG	p.Q288R	CAT_uc009ykc.1_RNA	NM_001752	NP_001743	P04040	CATA_HUMAN	catalase	288					hydrogen peroxide catabolic process|negative regulation of apoptosis|positive regulation of cell division|protein tetramerization|purine base metabolic process|purine nucleotide catabolic process|UV protection	peroxisomal matrix|peroxisomal membrane	catalase activity|heme binding|NADP binding|protein homodimerization activity			ovary(2)|pancreas(1)	3		Lung NSC(402;2.76e-08)|Acute lymphoblastic leukemia(5;0.00143)|all_hematologic(20;0.0116)|Melanoma(852;0.027)		BRCA - Breast invasive adenocarcinoma(625;0.000995)	Fomepizole(DB01213)	ACATTTAATCAGGCAGAAACT	0.388													12	422					0	0	0.003163	0	0	
EXT2	2132	broad.mit.edu	37	11	44148397	44148397	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:44148397C>A	uc001mxz.2	+	6	1305	c.971C>A	c.(970-972)GCT>GAT	p.A324D	EXT2_uc010rfo.1_Missense_Mutation_p.A352D|EXT2_uc001mxy.2_Missense_Mutation_p.A337D|EXT2_uc009ykt.2_Missense_Mutation_p.A324D|EXT2_uc001mya.2_Missense_Mutation_p.A357D	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	324	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						CTTCGTGGAGCTCGGCTGGGC	0.478			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				56	216					6.21051e-42	7.76819e-42	0.014410	1	0	
OR5M10	390167	broad.mit.edu	37	11	56345186	56345186	+	Silent	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:56345186T>C	uc001niz.1	-	1	12	c.12A>G	c.(10-12)CCA>CCG	p.P4P		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGTGTGGTTTGGGGACAACA	0.388													25	74					0	0	0.003954	0	0	
DDB1	1642	broad.mit.edu	37	11	61097044	61097044	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:61097044G>A	uc001nrc.3	-	4	566	c.340C>T	c.(340-342)CGC>TGC	p.R114C	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.R114C|DDB1_uc010rlg.1_5'Flank|DDB1_uc001nrd.2_Missense_Mutation_p.R114C|DDB1_uc009ynl.1_Intron	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	114	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						TCTGAGGGGCGGCCAATGCGG	0.502								NER					7	20					0	0	0.008291	0	0	
SLC22A25	387601	broad.mit.edu	37	11	62933697	62933697	+	Silent	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:62933697A>C	uc001nwr.1	-	7	1104	c.1104T>G	c.(1102-1104)ACT>ACG	p.T368T	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_3'UTR	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	368	Helical; Name=7; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						GGAGGTGCAAAGTAAGGCCCC	0.448													10	48					0	0	0.008291	0	0	
SLC22A10	387775	broad.mit.edu	37	11	63058038	63058038	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:63058038A>C	uc009yor.2	+	1	609	c.401A>C	c.(400-402)AAG>ACG	p.K134T	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Missense_Mutation_p.K82T	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	134	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						ATTGTGACTAAGGTAAAGGGT	0.433													19	107					0	0	0.003330	0	0	
PCNXL3	399909	broad.mit.edu	37	11	65385537	65385537	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:65385537C>T	uc001oey.2	+	6	704	c.704C>T	c.(703-705)ACT>ATT	p.T235I		NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	235						integral to membrane					0						ATGGCTGACACTCCCATGAGC	0.647													8	10					0	0	0.003080	0	0	
PCNXL3	399909	broad.mit.edu	37	11	65385540	65385540	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:65385540C>A	uc001oey.2	+	6	707	c.707C>A	c.(706-708)CCC>CAC	p.P236H		NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	236						integral to membrane					0						GCTGACACTCCCATGAGCCCC	0.642													7	11					2.7689e-08	3.1834e-08	0.001984	1	0	
CLCF1	23529	broad.mit.edu	37	11	67132822	67132822	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:67132822C>T	uc001okq.2	-	3	659	c.463G>A	c.(463-465)GGC>AGC	p.G155S	LOC100130987_uc010rpo.1_Intron|CLCF1_uc010rpp.1_Missense_Mutation_p.G145S	NM_013246	NP_037378	Q9UBD9	CLCF1_HUMAN	cardiotrophin-like cytokine factor 1 precursor	155					B cell differentiation|cytokine-mediated signaling pathway|JAK-STAT cascade|negative regulation of neuron apoptosis|positive regulation of astrocyte differentiation|positive regulation of B cell proliferation|positive regulation of immunoglobulin production|positive regulation of isotype switching to IgE isotypes|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	ciliary neurotrophic factor receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity				0			BRCA - Breast invasive adenocarcinoma(15;2.39e-06)			AGTGGGTAGCCCAGAGCTGCC	0.667													12	11					0	0	0.004007	0	0	
ME3	10873	broad.mit.edu	37	11	86158244	86158244	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:86158244C>T	uc001pbz.2	-	11	1497	c.1243G>A	c.(1243-1245)GCT>ACT	p.A415T	ME3_uc001pca.2_Missense_Mutation_p.A415T|ME3_uc009yvk.2_Missense_Mutation_p.A415T	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	415					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	GCGATGGCAGCAACACCTACA	0.567													25	96					0	0	0.006320	0	0	
TYR	7299	broad.mit.edu	37	11	88911583	88911583	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:88911583G>A	uc001pcs.2	+	1	544	c.462G>A	c.(460-462)GGG>GGA	p.G154G		NM_000372	NP_000363	P14679	TYRO_HUMAN	tyrosinase precursor	154	Lumenal, melanosome (Potential).				eye pigment biosynthetic process|melanin biosynthetic process from tyrosine|visual perception	Golgi-associated vesicle|integral to membrane|lysosome|melanosome membrane|perinuclear region of cytoplasm	copper ion binding|monophenol monooxygenase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.0033)			Azelaic Acid(DB00548)|Mimosine(DB01055)|NADH(DB00157)	TCCCCATAGGGACCTATGGCC	0.408									Oculocutaneous_Albinism				55	274					0	0	0.014410	0	0	
DYNC2H1	79659	broad.mit.edu	37	11	103027360	103027360	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:103027360A>G	uc001pho.2	+	26	4132	c.3988A>G	c.(3988-3990)AGA>GGA	p.R1330G	DYNC2H1_uc001phn.1_Missense_Mutation_p.R1330G|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	1330	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AATTTGGGAAAGAAAACTTGC	0.353													21	53					0	0	0.010504	0	0	
AMICA1	120425	broad.mit.edu	37	11	118071269	118071269	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:118071269G>C	uc001psk.2	-	7	1005	c.831C>G	c.(829-831)ATC>ATG	p.I277M	AMICA1_uc001psg.2_Missense_Mutation_p.I87M|AMICA1_uc001psh.2_Missense_Mutation_p.I238M|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Missense_Mutation_p.I267M|AMICA1_uc001psj.2_Missense_Mutation_p.I266M|AMICA1_uc010rxw.1_Missense_Mutation_p.I238M|AMICA1_uc010rxx.1_Missense_Mutation_p.I277M|AMICA1_uc001psl.1_Missense_Mutation_p.I233M	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	277	Helical; (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		TTCCCACAATGATCACCAACT	0.512													16	151					0	0	0.004007	0	0	
FOXRED1	55572	broad.mit.edu	37	11	126147540	126147540	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:126147540C>T	uc001qdi.2	+	11	1464	c.1417C>T	c.(1417-1419)CGC>TGC	p.R473C	FOXRED1_uc010sbn.1_Missense_Mutation_p.R303C|FOXRED1_uc010sbo.1_RNA|FOXRED1_uc010sbp.1_Missense_Mutation_p.R286C|FOXRED1_uc010sbq.1_Missense_Mutation_p.R340C|FOXRED1_uc001qdj.2_Missense_Mutation_p.R262C|FOXRED1_uc010sbr.1_Missense_Mutation_p.R459C|FOXRED1_uc001qdk.2_Missense_Mutation_p.R262C	NM_017547	NP_060017	Q96CU9	FXRD1_HUMAN	FAD-dependent oxidoreductase domain containing	473						integral to membrane|mitochondrion	oxidoreductase activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0729)		CCTCTTTACCCGCTTTTACTT	0.567													30	81					0	0	0.012213	0	0	
KIRREL3	84623	broad.mit.edu	37	11	126396494	126396494	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr11:126396494G>A	uc001qea.2	-	3	583	c.222C>T	c.(220-222)TAC>TAT	p.Y74Y	KIRREL3_uc001qeb.2_Silent_p.Y74Y|KIRREL3_uc001qec.1_Silent_p.Y74Y	NM_032531	NP_115920	Q8IZU9	KIRR3_HUMAN	kin of IRRE like 3 isoform 1	74	Ig-like C2-type 1.|Extracellular (Potential).				hemopoiesis	extracellular region|integral to membrane|plasma membrane	protein binding			ovary(3)	3	all_hematologic(175;0.145)	Lung NSC(97;0.0484)|all_lung(97;0.0522)|Medulloblastoma(222;0.0523)|Breast(109;0.0949)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;6.03e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.12)		CGAAGCCATCGTATTCGGGGA	0.617													5	13					0	0	0.001984	0	0	
WNK1	65125	broad.mit.edu	37	12	994221	994221	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:994221A>G	uc001qio.3	+	19	4758	c.4251A>G	c.(4249-4251)ACA>ACG	p.T1417T	WNK1_uc001qip.3_Silent_p.T1170T|WNK1_uc001qir.3_Silent_p.T590T	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1417					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CAAGTATCACAATACCTGCAG	0.478													28	274					0	0	0.005443	0	0	
CACNA1C	775	broad.mit.edu	37	12	2558191	2558191	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:2558191T>A	uc009zdu.1	+	4	840	c.527T>A	c.(526-528)TTA>TAA	p.L176*	CACNA1C_uc009zdv.1_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkb.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkc.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qke.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkf.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qjz.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkd.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkg.2_Nonsense_Mutation_p.L176*|CACNA1C_uc009zdw.1_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkh.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkl.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkn.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qko.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkp.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkr.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qku.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkq.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qks.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qkt.2_Nonsense_Mutation_p.L176*|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_5'UTR|CACNA1C_uc001qkj.1_5'UTR|CACNA1C_uc001qkk.1_5'UTR|CACNA1C_uc001qkm.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	176	I.|Helical; Name=S2 of repeat I; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GAAGCGTTTTTAAAAGTAATC	0.398													6	33					0	0	0.001984	0	0	
IFFO1	25900	broad.mit.edu	37	12	6658964	6658964	+	Silent	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:6658964C>A	uc001qpd.1	-	4	1063	c.1029G>T	c.(1027-1029)GTG>GTT	p.V343V	IFFO1_uc001qoy.2_RNA|IFFO1_uc001qpa.1_5'Flank|IFFO1_uc001qpb.1_Silent_p.V20V|IFFO1_uc001qpe.1_RNA|IFFO1_uc010sfe.1_Silent_p.V343V|IFFO1_uc001qpf.1_Silent_p.V343V|IFFO1_uc001qoz.1_5'Flank|IFFO1_uc001qpc.1_Silent_p.V343V|IFFO1_uc001qpg.2_5'Flank	NM_080730	NP_542768	Q0D2I5	IFFO1_HUMAN	intermediate filament family orphan isoform 2	343						intermediate filament					0						GCTGCTGAGCCACATCGCAGA	0.597													12	50					1.52009e-12	1.80717e-12	0.003163	1	0	
NANOG	79923	broad.mit.edu	37	12	7945604	7945604	+	Silent	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:7945604C>G	uc009zfy.1	+	2	426	c.210C>G	c.(208-210)ACC>ACG	p.T70T		NM_024865	NP_079141	Q9H9S0	NANOG_HUMAN	Nanog homeobox	70					cell proliferation|embryo development|somatic stem cell maintenance	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				Kidney(36;0.0872)		ATTCTTCCACCAGTCCCAAAG	0.443													9	258					0	0	0.001855	0	0	
CLEC1B	51266	broad.mit.edu	37	12	10150965	10150965	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:10150965A>C	uc001qwu.2	-	2	279	c.79T>G	c.(79-81)TCC>GCC	p.S27A	CLEC1B_uc009zhd.2_Intron	NM_016509	NP_057593	Q9P126	CLC1B_HUMAN	C-type lectin domain family 1, member B isoform	27	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	protein binding|sugar binding|transmembrane receptor activity				0						CACCAGGAGGAGGATGCAGAG	0.557													8	180					0	0	0.003080	0	0	
KIAA1467	57613	broad.mit.edu	37	12	13221366	13221366	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:13221366T>G	uc001rbi.2	+	8	1294	c.1271T>G	c.(1270-1272)CTT>CGT	p.L424R	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	424						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		GCATTGAGACTTCAAGGCCTG	0.458													67	199					0	0	0.014410	0	0	
ABCC9	10060	broad.mit.edu	37	12	21962818	21962818	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:21962818T>A	uc001rfi.1	-	35	4303	c.4283A>T	c.(4282-4284)AAG>ATG	p.K1428M	ABCC9_uc001rfh.2_Missense_Mutation_p.K1428M|ABCC9_uc001rfj.1_Missense_Mutation_p.K1392M|ABCC9_uc001rfg.2_5'Flank	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1428	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GACCATATTCTTCAGCTGAGC	0.333													52	161					0	0	0.014410	0	0	
ABCC9	10060	broad.mit.edu	37	12	21970208	21970208	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:21970208A>T	uc001rfi.1	-	31	3825	c.3805T>A	c.(3805-3807)TTG>ATG	p.L1269M	ABCC9_uc001rfh.2_Missense_Mutation_p.L1269M|ABCC9_uc001rfj.1_Missense_Mutation_p.L1233M	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1269	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGGTCAGCCAAGTTCCTCACA	0.383													49	179					0	0	0.014410	0	0	
Unknown	0	broad.mit.edu	37	12	24737049	24737049	+	RNA	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:24737049A>G	uc001rgb.1	-	1		c.54T>C								Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		AAAGAAAGGCAACATGGACTA	0.507													13	208					0	0	0.013537	0	0	
CNTN1	1272	broad.mit.edu	37	12	41333276	41333276	+	Silent	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:41333276C>G	uc001rmm.1	+	12	1481	c.1368C>G	c.(1366-1368)GTC>GTG	p.V456V	CNTN1_uc009zjy.1_Silent_p.V456V|CNTN1_uc001rmn.1_Silent_p.V445V|CNTN1_uc001rmo.2_Silent_p.V456V	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	456	Ig-like C2-type 5.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				AGTGGCTTGTCAATAGCAGCA	0.363													24	52					0	0	0.002780	0	0	
PDZRN4	29951	broad.mit.edu	37	12	41900462	41900462	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:41900462C>T	uc010skn.1	+	4	519	c.451C>T	c.(451-453)CGT>TGT	p.R151C	PDZRN4_uc001rmq.3_Missense_Mutation_p.R92C|PDZRN4_uc009zjz.2_Missense_Mutation_p.R90C|PDZRN4_uc001rmr.2_5'Flank	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	350							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				GGCCAAGCTTCGTCCACCTAC	0.488													9	127					0	0	0.006214	0	0	
SLC38A4	55089	broad.mit.edu	37	12	47172136	47172136	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:47172136G>C	uc001rpi.2	-	12	1408	c.1009C>G	c.(1009-1011)CCT>GCT	p.P337A	SLC38A4_uc001rpj.2_Missense_Mutation_p.P337A	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	337	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					ACTAGGATAGGAATTGCATAG	0.393													21	94					0	0	0.010504	0	0	
TMEM106C	79022	broad.mit.edu	37	12	48361948	48361948	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:48361948T>A	uc001rqp.2	+	8	804	c.689T>A	c.(688-690)ATG>AAG	p.M230K	TMEM106C_uc001rqo.2_Missense_Mutation_p.M211K|TMEM106C_uc001rqr.2_Missense_Mutation_p.M230K|TMEM106C_uc001rqq.2_Missense_Mutation_p.M211K	NM_024056	NP_076961	Q9BVX2	T106C_HUMAN	transmembrane protein 106C isoform a	230						endoplasmic reticulum membrane|integral to membrane					0		Acute lymphoblastic leukemia(13;0.11)		GBM - Glioblastoma multiforme(48;0.241)		ATTGGCCTCATGACCCAGAGC	0.413													39	358					0	0	0.014410	0	0	
KRT72	140807	broad.mit.edu	37	12	52981470	52981470	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:52981470C>T	uc001sar.2	-	7	1341	c.1255G>A	c.(1255-1257)GCC>ACC	p.A419T	KRT72_uc001saq.2_Missense_Mutation_p.A419T|KRT72_uc010sns.1_Missense_Mutation_p.A377T|KRT72_uc010snt.1_Missense_Mutation_p.A231T	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	419	Coil 2.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		ATATCCAGGGCCAGCTTCAGG	0.642													56	87					0	0	0.014410	0	0	
KRT18	3875	broad.mit.edu	37	12	53346603	53346603	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:53346603G>T	uc001sbe.2	+	8	1339	c.1270G>T	c.(1270-1272)GAC>TAC	p.D424Y	KRT18_uc009zmn.1_3'UTR|KRT18_uc001sbf.1_3'UTR|KRT18_uc001sbg.2_Missense_Mutation_p.D424Y|KRT18_uc009zmo.2_3'UTR	NM_199187	NP_954657	P05783	K1C18_HUMAN	keratin 18	424	Tail.				anatomical structure morphogenesis|cell cycle|Golgi to plasma membrane CFTR protein transport|interspecies interaction between organisms|negative regulation of apoptosis	centriolar satellite|keratin filament|perinuclear region of cytoplasm	protein binding|structural molecule activity			skin(1)	1						TGAGACCAATGACACCAAAGT	0.502													7	66					1.6384e-10	1.92989e-10	0.001984	1	0	
ERBB3	2065	broad.mit.edu	37	12	56492652	56492652	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:56492652G>C	uc001sjh.2	+	23	2995	c.2802G>C	c.(2800-2802)CAG>CAC	p.Q934H	ERBB3_uc009zoj.2_Intron|ERBB3_uc010sqb.1_Missense_Mutation_p.Q291H|ERBB3_uc010sqc.1_Missense_Mutation_p.Q875H|ERBB3_uc009zok.2_Missense_Mutation_p.Q199H|ERBB3_uc001sjk.2_Missense_Mutation_p.Q175H|ERBB3_uc001sjl.2_Missense_Mutation_p.Q54H	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	934	Cytoplasmic (Potential).|Protein kinase.				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			CACAGCCCCAGATCTGCACAA	0.453													10	181					0	0	0.006214	0	0	
C12orf12	196477	broad.mit.edu	37	12	91348107	91348107	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:91348107C>T	uc001tbj.2	-	1	847	c.413G>A	c.(412-414)GGC>GAC	p.G138D		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	138										central_nervous_system(1)|pancreas(1)	2						CTTCTTCCTGCCTGGGGGCTT	0.701													15	34					0	0	0.003163	0	0	
NUP37	79023	broad.mit.edu	37	12	102471233	102471233	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:102471233C>G	uc001tjc.2	-	6	654	c.589G>C	c.(589-591)GCC>CCC	p.A197P	NUP37_uc009zub.1_Missense_Mutation_p.A197P	NM_024057	NP_076962	Q8NFH4	NUP37_HUMAN	nucleoporin 37kDa	197	WD 3.				carbohydrate metabolic process|cell division|chromosome segregation|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	protein binding			ovary(1)	1						GCCTGTTGGGCCAAAAGATCA	0.373													5	183					0	0	0.000602	0	0	
DDX54	79039	broad.mit.edu	37	12	113617046	113617046	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:113617046C>T	uc001tup.2	-	4	494	c.466G>A	c.(466-468)GAG>AAG	p.E156K	DDX54_uc001tuq.3_Missense_Mutation_p.E156K	NM_024072	NP_076977	Q8TDD1	DDX54_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	156	Helicase ATP-binding.				estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nucleolus	ATP binding|ATP-dependent RNA helicase activity|estrogen receptor binding|RNA binding|transcription corepressor activity			skin(2)|central_nervous_system(1)	3						TTGAGCCGCTCGAACATTGGG	0.652													16	44					0	0	0.004990	0	0	
ZNF268	10795	broad.mit.edu	37	12	133780428	133780428	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr12:133780428C>A	uc010tcf.1	+	6	2486	c.2156C>A	c.(2155-2157)ACA>AAA	p.T719K	ZNF268_uc010tbv.1_Missense_Mutation_p.T558K|ZNF268_uc010tbw.1_Missense_Mutation_p.T558K|ZNF268_uc010tbx.1_Missense_Mutation_p.T579K|ZNF268_uc010tby.1_Missense_Mutation_p.T558K|ZNF268_uc010tbz.1_Missense_Mutation_p.T558K|ZNF268_uc010tca.1_Missense_Mutation_p.T558K|ZNF268_uc010tcb.1_Missense_Mutation_p.T579K|ZNF268_uc010tcc.1_Missense_Mutation_p.T558K|ZNF268_uc010tcd.1_Missense_Mutation_p.T558K|ZNF268_uc010tce.1_Missense_Mutation_p.T558K|ZNF268_uc010tcg.1_Missense_Mutation_p.T558K|ZNF268_uc010tch.1_Missense_Mutation_p.T719K	NM_003415	NP_003406	Q14587	ZN268_HUMAN	zinc finger protein 268 isoform a	719						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.000215)|all_epithelial(31;0.096)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		AGAACTCATACAGGAGAGAAA	0.418													6	7					0.00116845	0.00128932	0.001168	1	0	
MTUS2	23281	broad.mit.edu	37	13	29600629	29600629	+	Silent	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr13:29600629C>A	uc001usl.3	+	1	1882	c.1824C>A	c.(1822-1824)CCC>CCA	p.P608P		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	598						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GTGGGATCCCCAAGCCTGTCT	0.537													6	55					5.18039e-06	5.81658e-06	0.003080	1	0	
STARD13	90627	broad.mit.edu	37	13	33700296	33700296	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr13:33700296G>C	uc001uuw.2	-	7	2130	c.2004C>G	c.(2002-2004)CAC>CAG	p.H668Q	STARD13_uc001uuu.2_Missense_Mutation_p.H660Q|STARD13_uc001uuv.2_Missense_Mutation_p.H550Q|STARD13_uc001uux.2_Missense_Mutation_p.H633Q|STARD13_uc010tec.1_RNA	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	668	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		TTCTTTGGACGTGGACTATGA	0.498													104	164					0	0	0.014410	0	0	
ZC3H13	23091	broad.mit.edu	37	13	46542897	46542897	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr13:46542897C>T	uc010tfw.1	-	13	3788	c.3782G>A	c.(3781-3783)CGA>CAA	p.R1261Q	ZC3H13_uc001vaq.2_5'Flank|ZC3H13_uc001vas.1_Missense_Mutation_p.R1261Q|ZC3H13_uc001vat.1_Missense_Mutation_p.R1261Q	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	1261	Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		AGAAGTACTTCGACTGGGTTC	0.348													66	269					0	0	0.014410	0	0	
Unknown	0	broad.mit.edu	37	13	64321072	64321072	+	RNA	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr13:64321072G>A	uc010thk.1	+	1		c.113G>A								Homo sapiens hypothetical LOC647264, mRNA (cDNA clone MGC:189721 IMAGE:9057045), complete cds.																		ctatggctgtggctatggctc	0													9	28					0	0	0.010729	0	0	
LMO7	4008	broad.mit.edu	37	13	76417012	76417012	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr13:76417012A>G	uc001vjv.2	+	22	4118	c.3358A>G	c.(3358-3360)AAG>GAG	p.K1120E	LMO7_uc010thv.1_Missense_Mutation_p.K1071E|LMO7_uc001vjt.1_Missense_Mutation_p.K1019E|LMO7_uc010thw.1_Missense_Mutation_p.K997E|LMO7_uc001vjw.1_Missense_Mutation_p.K1026E	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1405						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		TGATATACCAAAGACAGAAGA	0.343													76	160					0	0	0.014410	0	0	
RNF219	79596	broad.mit.edu	37	13	79190393	79190393	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr13:79190393C>T	uc001vkw.1	-	6	1562	c.1503G>A	c.(1501-1503)GAG>GAA	p.E501E	uc001vku.1_RNA|RNF219_uc010afb.1_Silent_p.E311E|RNF219_uc010afc.2_Intron	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	501	Ser-rich.						zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		AGCCTGATTTCTCACTCAATT	0.388													11	163					0	0	0.008291	0	0	
ABCC4	10257	broad.mit.edu	37	13	95861791	95861791	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr13:95861791G>T	uc001vmd.3	-	6	801	c.682C>A	c.(682-684)CTA>ATA	p.L228I	ABCC4_uc010afk.2_Missense_Mutation_p.L228I|ABCC4_uc001vme.2_Missense_Mutation_p.L228I|ABCC4_uc010tih.1_Missense_Mutation_p.L153I|ABCC4_uc001vmf.2_Missense_Mutation_p.L185I|ABCC4_uc010afl.1_Missense_Mutation_p.L185I|ABCC4_uc010afm.1_Missense_Mutation_p.L241I	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	228	Helical; (Potential).|ABC transmembrane type-1 1.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	ATCCAGAGTAGGGCAGTCACT	0.478													14	103					1.05317e-09	1.23298e-09	0.002450	1	0	
MYO16	23026	broad.mit.edu	37	13	109753232	109753233	+	Nonsense_Mutation	DNP	GC	AG	AG			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr13:109753232_109753233GC>AG	uc001vqt.1	+	28	3495_3496	c.3369_3370GC>AG	c.(3367-3372)TGGCAG>TGAGAG	p.1123_1124WQ>*E	MYO16_uc010agk.1_Nonsense_Mutation_p.1145_1146WQ>*E|MYO16_uc010tjh.1_Nonsense_Mutation_p.635_636WQ>*E	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1123_1124	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TACAAGGCTGGCAGGTTGGTGA	0.446													20	44					0	0	0.004672	0	0	
C13orf28	122258	broad.mit.edu	37	13	113030779	113030779	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr13:113030779G>T	uc001vsd.1	+	1	111	c.80G>T	c.(79-81)AGA>ATA	p.R27I		NM_145248	NP_660291	Q96KW9	SPAC7_HUMAN	hypothetical protein LOC122258 precursor	27						extracellular region					0	all_lung(23;0.000633)|Lung NSC(43;0.0161)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0997)|Medulloblastoma(90;0.163)					CTCCGGCCGAGAACCGTGATT	0.592													7	37					0.00198382	0.00218277	0.001984	1	0	
OR4K1	79544	broad.mit.edu	37	14	20404092	20404092	+	Silent	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr14:20404092C>A	uc001vwj.1	+	1	267	c.267C>A	c.(265-267)CGC>CGA	p.R89R		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TTATTGAGCGCAAGACTATCT	0.413													38	186					3.93418e-24	4.81123e-24	0.004289	1	0	
TOX4	9878	broad.mit.edu	37	14	21960502	21960502	+	Silent	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr14:21960502A>C	uc001waz.2	+	6	961	c.858A>C	c.(856-858)GCA>GCC	p.A286A	TOX4_uc001way.2_Silent_p.A156A|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Silent_p.A263A|TOX4_uc010tlv.1_Silent_p.A156A	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	286	HMG box.					chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		ATCTGAAGGCACTGGCTGCTT	0.373													81	133					0	0	0.014410	0	0	
OR4E2	26686	broad.mit.edu	37	14	22133415	22133415	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr14:22133415C>T	uc010tmd.1	+	1	119	c.119C>T	c.(118-120)TCA>TTA	p.S40L		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CTAACGCTTTCAGGGAACATT	0.433													101	343					0	0	0.014410	0	0	
FERMT2	10979	broad.mit.edu	37	14	53360060	53360060	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr14:53360060A>G	uc001xad.2	-	4	532	c.477T>C	c.(475-477)TCT>TCC	p.S159S	FERMT2_uc001xac.2_Silent_p.S159S|FERMT2_uc001xae.2_Silent_p.S159S|FERMT2_uc001xaf.2_Silent_p.S159S	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	159					actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					CCTCATCTTCAGACTGGTCAT	0.398													6	167					0	0	0.003080	0	0	
EIF2S1	1965	broad.mit.edu	37	14	67831719	67831719	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr14:67831719G>C	uc001xjg.2	+	2	376	c.235G>C	c.(235-237)GAA>CAA	p.E79Q		NM_004094	NP_004085	P05198	IF2A_HUMAN	eukaryotic translation initiation factor 2,	79	S1 motif.					cytosol|eukaryotic translation initiation factor 2 complex|polysome|stress granule	protein binding|ribosome binding|translation initiation factor activity			ovary(1)	1				all cancers(60;0.000683)|OV - Ovarian serous cystadenocarcinoma(108;0.00579)|BRCA - Breast invasive adenocarcinoma(234;0.00937)		GGTGGACAAAGAAAAAGGTAA	0.318													26	108					0	0	0.003954	0	0	
PCNX	22990	broad.mit.edu	37	14	71495432	71495432	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr14:71495432T>A	uc001xmo.2	+	16	3928	c.3482T>A	c.(3481-3483)CTT>CAT	p.L1161H	PCNX_uc010are.1_Missense_Mutation_p.L1050H|PCNX_uc010arf.1_Missense_Mutation_p.L21H	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1161	Helical; (Potential).					integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		ACAAGCCTGCTTGCAGCACTT	0.303													12	64					0	0	0.002450	0	0	
KIAA1409	57578	broad.mit.edu	37	14	94060180	94060180	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr14:94060180G>A	uc001ybv.1	+	20	2739	c.2656G>A	c.(2656-2658)GCA>ACA	p.A886T	KIAA1409_uc001ybs.1_Missense_Mutation_p.A886T	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1063						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GAGGTTTGAAGCAGGTACCTC	0.463													37	105					0	0	0.006999	0	0	
ATG2B	55102	broad.mit.edu	37	14	96797882	96797882	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr14:96797882T>C	uc001yfi.2	-	11	1926	c.1561A>G	c.(1561-1563)ATT>GTT	p.I521V		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	521										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		AAAGGATCAATGTGAAGCACA	0.388													7	136					0	0	0.001984	0	0	
GABRB3	2562	broad.mit.edu	37	15	26793220	26793220	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr15:26793220A>T	uc001zaz.2	-	9	1284	c.1142T>A	c.(1141-1143)GTC>GAC	p.V381D	GABRB3_uc010uae.1_Missense_Mutation_p.V296D|GABRB3_uc001zba.2_Missense_Mutation_p.V381D|GABRB3_uc001zbb.2_Missense_Mutation_p.V437D	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	381	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GCCGCCTGAGACCTCATTCAT	0.473													52	200					0	0	0.014410	0	0	
RYR3	6263	broad.mit.edu	37	15	34049680	34049680	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr15:34049680T>C	uc001zhi.2	+	60	8658	c.8588T>C	c.(8587-8589)CTC>CCC	p.L2863P	RYR3_uc010bar.2_Missense_Mutation_p.L2863P	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2863	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCCCAGGTTCTCCTCCCGCTG	0.463													9	4					0	0	0.004482	0	0	
TTBK2	146057	broad.mit.edu	37	15	43045268	43045268	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr15:43045268T>C	uc001zqo.2	-	14	2615	c.2176A>G	c.(2176-2178)AGC>GGC	p.S726G	TTBK2_uc010bcy.2_Missense_Mutation_p.S657G	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	726					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		TCTGTTCTGCTTCCTCCACTA	0.458													11	242					0	0	0.010729	0	0	
SEMA6D	80031	broad.mit.edu	37	15	48062707	48062707	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr15:48062707A>G	uc010bek.2	+	19	2307	c.1947A>G	c.(1945-1947)GAA>GAG	p.E649E	SEMA6D_uc001zvw.2_Silent_p.E587E|SEMA6D_uc001zvy.2_Silent_p.E649E|SEMA6D_uc001zvz.2_Silent_p.E593E|SEMA6D_uc001zwa.2_Missense_Mutation_p.K586R|SEMA6D_uc001zwb.2_Silent_p.E587E|SEMA6D_uc001zwc.2_Silent_p.E574E	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	649	Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		TACGATGGGAAGTCCAGTCTG	0.438													45	146					0	0	0.014410	0	0	
KIAA1199	57214	broad.mit.edu	37	15	81176529	81176529	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr15:81176529A>G	uc002bfw.1	+	6	891	c.631A>G	c.(631-633)AGA>GGA	p.R211G	KIAA1199_uc010unn.1_Missense_Mutation_p.R211G	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	211										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TGACACCTATAGATCCAAGAA	0.473													102	121					0	0	0.014410	0	0	
GOLGA6L10	647042	broad.mit.edu	37	15	82635117	82635117	+	RNA	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr15:82635117T>C	uc002bgx.2	-	5		c.463A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TTTTTCAATTTCTTGACCCGC	0.383													3	24					0	0	0.004672	0	0	
ADAMTSL3	57188	broad.mit.edu	37	15	84488751	84488751	+	Silent	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr15:84488751T>G	uc002bjz.3	+	6	776	c.552T>G	c.(550-552)ACT>ACG	p.T184T	ADAMTSL3_uc002bjy.1_Silent_p.T184T|ADAMTSL3_uc010bmt.1_Silent_p.T184T|ADAMTSL3_uc010bmu.1_Silent_p.T184T	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	184						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGGATGGAACTCGTTGCAACA	0.522													14	66					0	0	0.004007	0	0	
SPATA8	145946	broad.mit.edu	37	15	97327407	97327407	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr15:97327407A>C	uc002bue.2	+	2	324	c.114A>C	c.(112-114)GAA>GAC	p.E38D	uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	38										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			ATTTCTCAGAAGCCATGACAT	0.592													5	131					0	0	0.000602	0	0	
ABCA3	21	broad.mit.edu	37	16	2347452	2347452	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr16:2347452C>T	uc002cpy.1	-	17	2853	c.2141G>A	c.(2140-2142)CGC>CAC	p.R714H	ABCA3_uc010bsk.1_Missense_Mutation_p.R656H|ABCA3_uc010bsl.1_Missense_Mutation_p.R714H	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	714	ABC transporter 1.				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CACGATGGTGCGGTCACTTTT	0.632													105	128					0	0	0.014410	0	0	
CLEC16A	23274	broad.mit.edu	37	16	11114066	11114066	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr16:11114066C>T	uc002dao.2	+	12	1550	c.1320C>T	c.(1318-1320)ATC>ATT	p.I440I	CLEC16A_uc002dan.3_Silent_p.I422I	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	440								p.0?(1)		ovary(1)|central_nervous_system(1)	2						AGATGGTGATCATGGAGCGTA	0.537													17	139					0	0	0.008871	0	0	
LDHD	197257	broad.mit.edu	37	16	75148041	75148041	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr16:75148041G>A	uc002fdm.2	-	6	768	c.721C>T	c.(721-723)CTC>TTC	p.L241F	LDHD_uc002fdn.2_Missense_Mutation_p.L218F	NM_153486	NP_705690	Q86WU2	LDHD_HUMAN	D-lactate dehydrogenase isoform 1 precursor	241	FAD-binding PCMH-type.						D-lactate dehydrogenase (cytochrome) activity|flavin adenine dinucleotide binding|protein binding				0						AGCCCCGTGAGGTTGTAGCCG	0.652													16	375					0	0	0.008871	0	0	
C17orf81	23587	broad.mit.edu	37	17	7160303	7160303	+	Silent	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:7160303C>A	uc002gfg.1	+	6	692	c.585C>A	c.(583-585)GGC>GGA	p.G195G	C17orf81_uc002gfj.2_Silent_p.G195G|C17orf81_uc010cmb.2_Silent_p.G195G|C17orf81_uc002gfh.1_Silent_p.G195G|C17orf81_uc002gfi.1_Silent_p.G195G|C17orf81_uc002gfl.1_Silent_p.G195G	NM_203415	NP_981960	Q8TE02	DERP6_HUMAN	S-phase 2 protein isoform 4	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding				0						GTACCATGGGCCAGGCCTCGG	0.612													31	25					1.06801e-11	1.26579e-11	0.009535	1	0	
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	T	T	rs11540652		TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:7577538C>T	uc002gim.2	-	7	937	c.743G>A	c.(742-744)CGG>CAG	p.R248Q	TP53_uc002gig.1_Missense_Mutation_p.R248Q|TP53_uc002gih.2_Missense_Mutation_p.R248Q|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116Q|TP53_uc010cng.1_Missense_Mutation_p.R116Q|TP53_uc002gii.1_Missense_Mutation_p.R116Q|TP53_uc010cnh.1_Missense_Mutation_p.R248Q|TP53_uc010cni.1_Missense_Mutation_p.R248Q|TP53_uc002gij.2_Missense_Mutation_p.R248Q|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155Q|TP53_uc002gio.2_Missense_Mutation_p.R116Q	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	248	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		R -> W (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|NR -> KW (in sporadic cancers; somatic mutation).|R -> C (in a sporadic cancer; somatic mutation).|NR -> IP (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R248Q(523)|p.R248W(443)|p.R248L(63)|p.R248P(12)|p.R248G(11)|p.R248R(10)|p.0?(7)|p.R155Q(4)|p.N247_R248delNR(2)|p.N247_R248>KW(2)|p.M246_P250delMNRRP(2)|p.R248fs*97(2)|p.R248_P250delRRP(1)|p.N247_R249delNRR(1)|p.N247_P250delNRRP(1)|p.R249fs*96(1)|p.R248C(1)|p.G245fs*14(1)|p.N247_R248>IP(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GATGGGCCTCCGGTTCATGCC	0.572	R248Q(KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HS683_CENTRAL_NERVOUS_SYSTEM)|R248Q(NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HCC1143_BREAST)|R248Q(BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SKUT1_SOFT_TISSUE)|R248Q(HSC4_UPPER_AERODIGESTIVE_TRACT)|R248Q(HEC1A_ENDOMETRIUM)|R248Q(SF295_CENTRAL_NERVOUS_SYSTEM)|R248Q(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIN87_STOMACH)|R248Q(P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(RT112_URINARY_TRACT)|R248Q(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PANC0203_PANCREAS)|R248Q(EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NIHOVCAR3_OVARY)|R248Q(CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SW1463_LARGE_INTESTINE)|R248Q(HCC70_BREAST)|R248Q(KYSE150_OESOPHAGUS)|R248Q(NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIH211_LUNG)|R248Q(KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PC14_LUNG)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			77	38					0	0	0.014410	0	0	
DNAH9	1770	broad.mit.edu	37	17	11684396	11684396	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:11684396C>G	uc002gne.2	+	39	7691	c.7623C>G	c.(7621-7623)ATC>ATG	p.I2541M	DNAH9_uc010coo.2_Missense_Mutation_p.I1835M	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2541	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGAAACTCATCTATTTCATTG	0.552													4	49					0	0	0.000602	0	0	
NCOR1	9611	broad.mit.edu	37	17	16068476	16068476	+	Splice_Site	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:16068476C>A	uc002gpo.2	-	5	676	c.436_splice	c.e5-1	p.D146_splice	NCOR1_uc002gpn.2_Splice_Site_p.D146_splice|NCOR1_uc002gpp.1_Splice_Site_p.D37_splice|NCOR1_uc002gpr.2_Splice_Site_p.D37_splice|NCOR1_uc002gps.1_Splice_Site_p.D146_splice|NCOR1_uc010coz.1_Splice_Site|NCOR1_uc010cpb.1_Splice_Site_p.D146_splice|NCOR1_uc010cpa.1_Splice_Site_p.D146_splice|NCOR1_uc002gpu.2_Intron	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1						cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		ATGCTGGATCCTTTAGAGAAT	0.398													16	212					1.22574e-08	1.41346e-08	0.014323	1	0	
PHF12	57649	broad.mit.edu	37	17	27233875	27233875	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:27233875G>A	uc002hdg.1	-	14	3209	c.2679C>T	c.(2677-2679)ATC>ATT	p.I893I	PHF12_uc010wbb.1_Silent_p.I875I	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	893					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			CCAACTTACTGATGACACTCT	0.537													38	125					0	0	0.009718	0	0	
ADAP2	55803	broad.mit.edu	37	17	29281541	29281541	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:29281541G>C	uc002hfx.2	+	9	1129	c.850G>C	c.(850-852)GAG>CAG	p.E284Q	ADAP2_uc010csk.2_Missense_Mutation_p.E290Q|ADAP2_uc002hfy.2_Missense_Mutation_p.E283Q|ADAP2_uc010csl.2_RNA	NM_018404	NP_060874	Q9NPF8	ADAP2_HUMAN	centaurin-alpha 2 protein	284	PH 2.				heart development|regulation of ARF GTPase activity	mitochondrial envelope|plasma membrane	ARF GTPase activator activity|inositol 1,3,4,5 tetrakisphosphate binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding, bridging|zinc ion binding	p.?(1)		ovary(1)	1						GGATTGCCATGAGCGGAGGCT	0.512													80	312					0	0	0.014410	0	0	
NF1	4763	broad.mit.edu	37	17	29657378	29657378	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:29657378T>G	uc002hgg.2	+	39	6007	c.5674T>G	c.(5674-5676)TTA>GTA	p.L1892V	NF1_uc002hgh.2_Missense_Mutation_p.L1871V|NF1_uc002hgi.1_Missense_Mutation_p.L904V|NF1_uc010cso.2_Missense_Mutation_p.L80V	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1892					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CGAGGGCCAGTTACTAGAGAC	0.403			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			76	100					0	0	0.014410	0	0	
LIG3	3980	broad.mit.edu	37	17	33331399	33331399	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:33331399G>A	uc002hik.1	+	20	3012	c.2904G>A	c.(2902-2904)CAG>CAA	p.Q968Q	uc002hil.2_5'Flank	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	968	BRCT.				base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	ACCTGGTACAGGAATTTGATA	0.572								Other_BER_factors					63	62					0	0	0.014410	0	0	
CCL18	6362	broad.mit.edu	37	17	34391748	34391748	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:34391748G>T	uc002hku.2	+	1	106	c.46G>T	c.(46-48)GCC>TCC	p.A16S		NM_002988	NP_002979	P55774	CCL18_HUMAN	small inducible cytokine A18 precursor	16					cell-cell signaling|chemotaxis|immune response|inflammatory response|response to biotic stimulus|signal transduction	extracellular space	chemokine activity				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CTGCACCATGGCCCTCTGCTC	0.567													55	178					1.93748e-29	2.39226e-29	0.014410	1	0	
MED1	5469	broad.mit.edu	37	17	37564295	37564295	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:37564295G>A	uc002hrv.3	-	17	4391	c.4179C>T	c.(4177-4179)ATC>ATT	p.I1393I	MED1_uc010wee.1_Silent_p.I1221I|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	1393	Ser-rich.|Interaction with TP53.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		GCTTACTGATGATAATTTTTG	0.458										HNSCC(31;0.082)			43	408					0	0	0.009718	0	0	
PGAP3	93210	broad.mit.edu	37	17	37830295	37830295	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:37830295A>G	uc002hsj.2	-	5	551	c.508T>C	c.(508-510)TTC>CTC	p.F170L	PGAP3_uc010cvy.2_RNA|PGAP3_uc010wej.1_Missense_Mutation_p.F149L|PGAP3_uc002hsk.2_Missense_Mutation_p.F119L|PGAP3_uc010cvz.2_Intron	NM_033419	NP_219487	Q96FM1	PGAP3_HUMAN	per1-like domain containing 1 precursor	170	Helical; (Potential).				GPI anchor biosynthetic process	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	hydrolase activity, acting on ester bonds			upper_aerodigestive_tract(1)	1						GAGGCACAGAAGTAGTCCATT	0.602													42	599					0	0	0.008740	0	0	
ETV4	2118	broad.mit.edu	37	17	41610164	41610164	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:41610164T>C	uc002idw.2	-	8	817	c.689A>G	c.(688-690)CAT>CGT	p.H230R	ETV4_uc002idv.2_5'Flank|ETV4_uc010wih.1_Missense_Mutation_p.H176R|ETV4_uc010czh.2_Missense_Mutation_p.H229R|ETV4_uc010wii.1_Missense_Mutation_p.H191R|ETV4_uc002idx.2_Missense_Mutation_p.H230R|ETV4_uc010wij.1_Missense_Mutation_p.H191R	NM_001986	NP_001977	P43268	ETV4_HUMAN	ets variant gene 4 (E1A enhancer binding	230	Gln-rich.				positive regulation of transcription, DNA-dependent	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/ETV4(6)	bone(4)|soft_tissue(2)|ovary(1)	7		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0798)		CAGGGGATCATGGTATTCTTG	0.637			T	EWSR1|TMPRSS2|DDX5|KLK2|CANT1	Ewing sarcoma|Prostate carcinoma								4	102					0	0	0.009096	0	0	
FMNL1	752	broad.mit.edu	37	17	43309736	43309736	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:43309736G>T	uc002iin.2	+	3	416	c.216G>T	c.(214-216)GAG>GAT	p.E72D	FMNL1_uc002iio.2_Missense_Mutation_p.E27D|FMNL1_uc002iip.1_5'Flank	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	72	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						CTCCCCAGGAGCGGTTTCAAG	0.547													13	207					3.27435e-08	3.74212e-08	0.002450	1	0	
MAPT	4137	broad.mit.edu	37	17	44061042	44061042	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:44061042G>A	uc002ijr.3	+	6	1192	c.872G>A	c.(871-873)CGG>CAG	p.R291Q	MAPT_uc010dau.2_Missense_Mutation_p.R291Q|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	291					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				AGTGTAGGGCGGGCCAAAGGG	0.622													78	54					0	0	0.014410	0	0	
MPO	4353	broad.mit.edu	37	17	56350797	56350797	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:56350797G>A	uc002ivu.1	-	9	1776	c.1599C>T	c.(1597-1599)GCC>GCT	p.A533A		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	533					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	CCCTCCAGGAGGCAAAAAAGA	0.602													56	240					0	0	0.014410	0	0	
ABCA8	10351	broad.mit.edu	37	17	66920887	66920887	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr17:66920887G>A	uc002jhp.2	-	10	1576	c.1397C>T	c.(1396-1398)TCT>TTT	p.S466F	ABCA8_uc002jhq.2_Missense_Mutation_p.S466F|ABCA8_uc010wqq.1_Missense_Mutation_p.S466F|ABCA8_uc010wqr.1_Missense_Mutation_p.S405F|ABCA8_uc002jhr.2_Missense_Mutation_p.S466F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	466						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TTGTTCAAAAGAGTCATGAAA	0.453													34	164					0	0	0.004289	0	0	
PIAS2	9063	broad.mit.edu	37	18	44407934	44407934	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr18:44407934C>T	uc002lck.2	-	11	1654	c.1496G>A	c.(1495-1497)AGC>AAC	p.S499N	PIAS2_uc010dnp.2_Missense_Mutation_p.S197N|PIAS2_uc002lcl.2_Missense_Mutation_p.S499N|PIAS2_uc010xda.1_Missense_Mutation_p.S197N|PIAS2_uc002lcm.2_Missense_Mutation_p.S499N	NM_004671	NP_004662	O75928	PIAS2_HUMAN	protein inhibitor of activated STAT X isoform	499					androgen receptor signaling pathway|negative regulation of androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|PML body	androgen receptor binding|DNA binding|protein binding|SUMO ligase activity|transcription coactivator activity|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						TTTGGTTGGGCTGCTTTGTGT	0.368													30	135					0	0	0.004289	0	0	
PQLC1	80148	broad.mit.edu	37	18	77679186	77679186	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr18:77679186C>G	uc002lnl.2	-	5	778	c.606G>C	c.(604-606)ATG>ATC	p.M202I	PQLC1_uc010dre.2_Missense_Mutation_p.M119I|PQLC1_uc002lnk.2_Missense_Mutation_p.M184I|PQLC1_uc010xfm.1_Intron	NM_025078	NP_079354	Q8N2U9	PQLC1_HUMAN	PQ loop repeat containing 1 isoform 1	202	PQ-loop 2.					integral to membrane				large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0212)|Melanoma(33;0.2)		OV - Ovarian serous cystadenocarcinoma(15;8.2e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0258)		CGGCCTACCTCATGCCCTCCG	0.602													15	36					0	0	0.010504	0	0	
OR2Z1	284383	broad.mit.edu	37	19	8841802	8841802	+	Missense_Mutation	SNP	C	T	T	rs58741481	byFrequency	TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:8841802C>T	uc010xkg.1	+	1	412	c.412C>T	c.(412-414)CGC>TGC	p.R138C		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						ACTTATGAGACGCCAGGTATG	0.557													87	74					0	0	0.014410	0	0	
MUC16	94025	broad.mit.edu	37	19	9076652	9076652	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:9076652A>G	uc002mkp.2	-	3	10998	c.10794T>C	c.(10792-10794)ACT>ACC	p.T3598T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3599	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCAAGTTTGAAGTCATGTCTG	0.483													47	124					0	0	0.014410	0	0	
CACNA1A	773	broad.mit.edu	37	19	13346476	13346476	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:13346476C>G	uc010dze.2	-	32	5258	c.5022G>C	c.(5020-5022)CAG>CAC	p.Q1674H	CACNA1A_uc010xnd.1_Missense_Mutation_p.Q379H|CACNA1A_uc002mwx.3_Missense_Mutation_p.Q379H|CACNA1A_uc010dzc.2_Missense_Mutation_p.Q1199H|CACNA1A_uc002mwy.3_Missense_Mutation_p.Q1673H|CACNA1A_uc002mwv.3_Missense_Mutation_p.Q190H	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1674	IV.|Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TGGTGTAACCCTGACGGAGAA	0.567											OREG0025293	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	90					0	0	0.006214	0	0	
USHBP1	83878	broad.mit.edu	37	19	17370149	17370149	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:17370149A>G	uc002nfs.1	-	7	1108	c.995T>C	c.(994-996)CTA>CCA	p.L332P	USHBP1_uc002nfr.1_5'Flank|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.L268P|USHBP1_uc010eam.1_Missense_Mutation_p.L260P	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	332							PDZ domain binding			ovary(1)	1						CCGCTGGCCTAGCTGCATGCT	0.572													3	77					0	0	0.004672	0	0	
ZNF493	284443	broad.mit.edu	37	19	21606712	21606712	+	Silent	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:21606712T>C	uc002npx.2	+	2	1147	c.867T>C	c.(865-867)TCT>TCC	p.S289S	ZNF493_uc002npw.2_Silent_p.S417S|ZNF493_uc002npy.2_Silent_p.S289S	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	289	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATAAGGAGTCTTCACACCTTA	0.348													3	86					0	0	0.004672	0	0	
C19orf61	56006	broad.mit.edu	37	19	44237015	44237015	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:44237015C>T	uc002oxj.2	-	13	1822	c.1479G>A	c.(1477-1479)AAG>AAA	p.K493K	C19orf61_uc002oxk.2_Silent_p.K493K	NM_019108	NP_061981	Q9H0W8	SMG9_HUMAN	SMG9 protein	493					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	intracellular	protein binding				0		Prostate(69;0.0352)				CTTACCAGTTCTTCTCGGTGA	0.582													30	93					0	0	0.009535	0	0	
PVR	5817	broad.mit.edu	37	19	45165008	45165008	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:45165008A>T	uc002ozm.2	+	8	1483	c.1184A>T	c.(1183-1185)CAT>CTT	p.H395L	PVR_uc010xxb.1_Missense_Mutation_p.H342L|PVR_uc010xxc.1_Missense_Mutation_p.H350L|PVR_uc002ozn.2_Missense_Mutation_p.H340L	NM_006505	NP_006496	P15151	PVR_HUMAN	poliovirus receptor isoform alpha	395	Cytoplasmic (Potential).				adherens junction organization|cell adhesion|cell junction assembly|interspecies interaction between organisms|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity	cell junction|cell surface|cytoplasm|extracellular space|integral to membrane|nucleus	cell adhesion molecule binding|receptor activity				0	Lung NSC(12;0.00608)|all_lung(12;0.0148)	Medulloblastoma(540;0.0425)|Ovarian(192;0.0728)|Prostate(69;0.081)|all_neural(266;0.112)		Epithelial(262;0.000601)		CTCTTCTAGCATGTCTCCTAT	0.512													7	159					0	0	0.003080	0	0	
TRPM4	54795	broad.mit.edu	37	19	49671880	49671880	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:49671880A>T	uc002pmw.2	+	6	755	c.683A>T	c.(682-684)AAC>ATC	p.N228I	TRPM4_uc010emu.2_Missense_Mutation_p.N228I|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Missense_Mutation_p.N54I|TRPM4_uc010emv.2_Missense_Mutation_p.N113I|TRPM4_uc010yal.1_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	228	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CTGGACTACAACTACTCGGCC	0.627													4	74					0	0	0.009096	0	0	
CEACAM18	729767	broad.mit.edu	37	19	51986375	51986375	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:51986375T>G	uc002pwv.1	+	5	961	c.961T>G	c.(961-963)TTC>GTC	p.F321V		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	321	Ig-like C2-type.					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CTGCTATTCCTTCCTGGATCT	0.522													76	245					0	0	0.014410	0	0	
LHCGR	3973	broad.mit.edu	37	2	48925758	48925758	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:48925758T>C	uc002rwu.3	-	9	932	c.862A>G	c.(862-864)AAA>GAA	p.K288E	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	288	Extracellular (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	ACTTACTCTTTTGTTGGCAAG	0.423									Familial_Male-Limited_Precocious_Puberty				42	97					0	0	0.008740	0	0	
REG1A	5967	broad.mit.edu	37	2	79349196	79349196	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:79349196A>C	uc002snz.2	+	4	369	c.266A>C	c.(265-267)AAG>ACG	p.K89T	REG1A_uc010ffx.1_3'UTR|REG1A_uc010ysd.1_Missense_Mutation_p.K89T	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	89	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						TCACTGATTAAGGAGAGTGGC	0.498													26	102					0	0	0.006320	0	0	
KDM3A	55818	broad.mit.edu	37	2	86669284	86669284	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:86669284C>T	uc002sri.3	+	2	441	c.114C>T	c.(112-114)GTC>GTT	p.V38V	KDM3A_uc010ytj.1_Silent_p.V38V|KDM3A_uc010ytk.1_Silent_p.V38V	NM_018433	NP_060903	Q9Y4C1	KDM3A_HUMAN	jumonji domain containing 1A	38					androgen receptor signaling pathway|cell differentiation|formaldehyde biosynthetic process|histone H3-K9 demethylation|hormone-mediated signaling pathway|positive regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	5						TGGAGCGCGTCGCCGAGTGGC	0.642													14	48					0	0	0.012319	0	0	
FOXD4L1	200350	broad.mit.edu	37	2	114256921	114256921	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:114256921C>T	uc002tjw.3	+	1	261	c.88C>T	c.(88-90)CTG>TTG	p.L30L		NM_012184	NP_036316	Q9NU39	FX4L1_HUMAN	forkhead box D4-like 1	30					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						AATCGATGTCCTGGGAgagga	0.517													5	117					0	0	0.003163	0	0	
ZEB2	9839	broad.mit.edu	37	2	145157322	145157322	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:145157322A>C	uc002tvu.2	-	8	1912	c.1432T>G	c.(1432-1434)TGC>GGC	p.C478G	ZEB2_uc002tvv.2_Missense_Mutation_p.C472G|ZEB2_uc010zbm.1_Missense_Mutation_p.C449G|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.C507G	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	478	SMAD-MH2 binding domain (By similarity).					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		TCAGCCTTGCAGTCCATTTTT	0.408													82	132					0	0	0.014410	0	0	
LY75	4065	broad.mit.edu	37	2	160708776	160708776	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:160708776T>G	uc002ubc.3	-	21	2888	c.2819A>C	c.(2818-2820)AAA>ACA	p.K940T	LY75_uc002ubb.3_Missense_Mutation_p.K940T|LY75_uc010fos.2_Missense_Mutation_p.K940T	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	940	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TGGGCTGTATTTCTCTAACGA	0.363													29	134					0	0	0.008361	0	0	
XIRP2	129446	broad.mit.edu	37	2	168096364	168096364	+	Splice_Site	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:168096364G>T	uc002udx.2	+	5	877	c.859_splice	c.e5-1	p.E287_splice	XIRP2_uc010fpn.2_Splice_Site_p.E320_splice|XIRP2_uc010fpo.2_Splice_Site_p.E287_splice|XIRP2_uc010fpp.2_Splice_Site_p.E287_splice|XIRP2_uc002udy.2_Splice_Site_p.E112_splice|XIRP2_uc010fpq.2_Splice_Site_p.E65_splice|XIRP2_uc010fpr.2_Splice_Site_p.E65_splice	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1						actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGTGCTTTCAGGAGGCAATTC	0.363													12	84					2.80697e-09	3.25643e-09	0.010729	1	0	
XIRP2	129446	broad.mit.edu	37	2	168105231	168105231	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:168105231A>C	uc002udx.2	+	8	7347	c.7329A>C	c.(7327-7329)AAA>AAC	p.K2443N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.K2268N|XIRP2_uc010fpq.2_Missense_Mutation_p.K2221N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2268					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TTTCCCCCAAAGTTGAACTGG	0.413													45	186					0	0	0.014410	0	0	
DHRS9	10170	broad.mit.edu	37	2	169938295	169938295	+	Silent	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:169938295T>C	uc002uep.2	+	5	1708	c.204T>C	c.(202-204)GCT>GCC	p.A68A	DHRS9_uc002ueq.2_Silent_p.A68A|DHRS9_uc010zdc.1_Silent_p.A128A|DHRS9_uc002uer.1_Silent_p.A68A|DHRS9_uc010zdd.1_Silent_p.A68A|DHRS9_uc010zde.1_Silent_p.A68A	NM_005771	NP_005762	Q9BPW9	DHRS9_HUMAN	NADP-dependent retinol dehydrogenase/reductase	68					9-cis-retinoic acid biosynthetic process|androgen metabolic process|epithelial cell differentiation|progesterone metabolic process|retinol metabolic process	integral to endoplasmic reticulum membrane|microsome	alcohol dehydrogenase (NAD) activity|binding|racemase and epimerase activity|retinol dehydrogenase activity|testosterone dehydrogenase (NAD+) activity				0						GATCAACAGCTTTAAAGGCAG	0.478													14	165					0	0	0.003163	0	0	
TTN	7273	broad.mit.edu	37	2	179403391	179403391	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:179403391G>T	uc010zfg.1	-	303	91685	c.91461C>A	c.(91459-91461)GAC>GAA	p.D30487E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D24182E|TTN_uc010zfi.1_Missense_Mutation_p.D24115E|TTN_uc010zfj.1_Missense_Mutation_p.D23990E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31414							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAATTGCTTGTCCTTAATAC	0.438													82	349					3.77845e-26	4.63554e-26	0.014410	1	0	
TTN	7273	broad.mit.edu	37	2	179435132	179435132	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:179435132C>G	uc010zfg.1	-	275	68247	c.68023G>C	c.(68023-68025)GAA>CAA	p.E22675Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E16370Q|TTN_uc010zfi.1_Missense_Mutation_p.E16303Q|TTN_uc010zfj.1_Missense_Mutation_p.E16178Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23602							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCTCCTTTCCACAATATAA	0.443													17	50					0	0	0.004990	0	0	
TTN	7273	broad.mit.edu	37	2	179577811	179577811	+	Splice_Site	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:179577811C>A	uc010zfg.1	-	90	23541	c.23317_splice	c.e90+1	p.E7773_splice	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Splice_Site_p.E4434_splice	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A								ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTAAACTGACCTCTCACAGT	0.348													3	78					0.004672	0.00512585	0.004672	1	0	
TTN	7273	broad.mit.edu	37	2	179578671	179578671	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:179578671T>G	uc010zfg.1	-	89	23206	c.22982A>C	c.(22981-22983)CAG>CCG	p.Q7661P	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.Q4322P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8588							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACAGGGTTCTGCACCTCAAA	0.413													16	61					0	0	0.004990	0	0	
ZNF804A	91752	broad.mit.edu	37	2	185800895	185800895	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:185800895C>A	uc002uph.2	+	4	1366	c.772C>A	c.(772-774)CAT>AAT	p.H258N		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	258						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CAGTGCTTGTCATCTTCAACA	0.433													42	216					4.14194e-30	5.14726e-30	0.011902	1	0	
BARD1	580	broad.mit.edu	37	2	215593709	215593709	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:215593709G>A	uc002veu.2	-	11	2160	c.2025C>T	c.(2023-2025)TGC>TGT	p.C675C	BARD1_uc010zjm.1_Missense_Mutation_p.A530V	NM_000465	NP_000456	Q99728	BARD1_HUMAN	BRCA1 associated RING domain 1	675	BRCT 2.				cell cycle arrest|DNA repair|negative regulation of apoptosis|negative regulation of mRNA 3'-end processing|negative regulation of protein export from nucleus|positive regulation of apoptosis|positive regulation of protein catabolic process|protein K6-linked ubiquitination|regulation of phosphorylation|tissue homeostasis	BRCA1-A complex|BRCA1-BARD1 complex|cytoplasm	kinase binding|protein heterodimerization activity|protein homodimerization activity|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2		Renal(323;0.0243)		Epithelial(149;3.2e-06)|all cancers(144;0.000461)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AATAGAAGTAGCATCCATCAA	0.403									Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				27	51					0	0	0.008361	0	0	
CXCR1	3577	broad.mit.edu	37	2	219029003	219029003	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:219029003T>G	uc002vhc.2	-	2	1051	c.932A>C	c.(931-933)AAT>ACT	p.N311T		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	311	Cytoplasmic (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						ATGGCGAAAATTTTGGCCGAT	0.542													7	136					0	0	0.003080	0	0	
PAX3	5077	broad.mit.edu	37	2	223066852	223066852	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:223066852C>T	uc010fwo.2	-	8	1597	c.1231G>A	c.(1231-1233)GCG>ACG	p.A411T	PAX3_uc002vmt.1_Missense_Mutation_p.A411T|PAX3_uc002vmy.1_Missense_Mutation_p.A410T|PAX3_uc002vmv.1_Missense_Mutation_p.A411T|PAX3_uc002vmw.1_Intron|PAX3_uc002vmx.1_Intron	NM_181457	NP_852122	P23760	PAX3_HUMAN	paired box 3 isoform PAX3	411					apoptosis|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX3/FOXO1(749)|PAX3/NCOA1(8)|PAX3/NCOA2(4)	soft_tissue(761)|ovary(4)|skin(1)	766		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;1.85e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGGAGAGCGCGTAATCAGTC	0.547			T	FOXO1A|NCOA1	alveolar rhabdomyosarcoma		Waardenburg syndrome; craniofacial-deafness-hand syndrome						6	24					0	0	0.001984	0	0	
PID1	55022	broad.mit.edu	37	2	229890734	229890734	+	Missense_Mutation	SNP	T	C	C	rs138008399	byFrequency	TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:229890734T>C	uc002vpr.3	-	3	405	c.367A>G	c.(367-369)ACG>GCG	p.T123A	PID1_uc002vps.3_Missense_Mutation_p.T121A|PID1_uc002vpt.3_Missense_Mutation_p.T90A|PID1_uc002vpu.3_Missense_Mutation_p.T41A	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	123	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		CGGGCTAGCGTGTGCTTCTTC	0.547													12	109					0	0	0.013537	0	0	
RBM44	375316	broad.mit.edu	37	2	238725997	238725997	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:238725997T>A	uc002vxi.3	+	3	570	c.438T>A	c.(436-438)TTT>TTA	p.F146L		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	145							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		AGGTTTTTTTTAATATTTTGG	0.318													6	20					0	0	0.001984	0	0	
PER2	8864	broad.mit.edu	37	2	239176732	239176732	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr2:239176732A>C	uc002vyc.2	-	8	1169	c.932T>G	c.(931-933)CTT>CGT	p.L311R	PER2_uc010znv.1_Missense_Mutation_p.L311R|PER2_uc010znw.1_Missense_Mutation_p.L311R|PER2_uc010fyx.1_Missense_Mutation_p.L311R	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	311					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		TGCCAGCAGAAGGCAGCAAAG	0.567													7	47					0	0	0.003080	0	0	
TMC2	117532	broad.mit.edu	37	20	2621798	2621798	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:2621798C>T	uc002wgf.1	+	20	2537	c.2522C>T	c.(2521-2523)GCC>GTC	p.A841V	TMC2_uc002wgg.1_Missense_Mutation_p.A825V	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	841	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CCTCCCTCTGCCAGCCAAAGC	0.567													106	183					0	0	0.014410	0	0	
PLCB4	5332	broad.mit.edu	37	20	9459579	9459579	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:9459579G>A	uc002wnf.2	+	37	3607	c.3471G>A	c.(3469-3471)ATG>ATA	p.M1157I	PLCB4_uc010gbx.2_Missense_Mutation_p.M1169I|PLCB4_uc002wne.2_Missense_Mutation_p.A1170T|PLCB4_uc002wnh.2_Missense_Mutation_p.M1004I	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1157					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CGAAGGAGATGCAGCAGATGG	0.453													11	41					0	0	0.002450	0	0	
TMEM90B	79953	broad.mit.edu	37	20	24523880	24523880	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:24523880G>A	uc002wtw.1	+	2	780	c.147G>A	c.(145-147)CAG>CAA	p.Q49Q		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	49	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CCCAGTACCAGAGCCACCGGG	0.597													11	151					0	0	0.008291	0	0	
PXMP4	11264	broad.mit.edu	37	20	32295542	32295542	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:32295542G>A	uc002wzv.2	-	4	732	c.609C>T	c.(607-609)CTC>CTT	p.L203L	PXMP4_uc002wzw.2_3'UTR|PXMP4_uc010zuh.1_3'UTR	NM_007238	NP_009169	Q9Y6I8	PXMP4_HUMAN	peroxisomal membrane protein 4 isoform a	203						integral to membrane|membrane fraction|mitochondrial inner membrane|peroxisomal membrane	protein transporter activity				0						TGTTATAGACGAGGAAGTCTG	0.537													8	244					0	0	0.004482	0	0	
NCOA6	23054	broad.mit.edu	37	20	33330312	33330312	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:33330312C>A	uc002xav.2	-	12	6319	c.3748G>T	c.(3748-3750)GGA>TGA	p.G1250*	NCOA6_uc002xaw.2_Nonsense_Mutation_p.G1250*	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1250	NCOA1-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						GGGAAGAGTCCTGCTATGGAG	0.473													18	403					7.07596e-05	7.87585e-05	0.006122	1	0	
RALGAPB	57148	broad.mit.edu	37	20	37121694	37121694	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:37121694C>G	uc002xiw.2	+	3	565	c.308C>G	c.(307-309)TCT>TGT	p.S103C	RALGAPB_uc010zvz.1_Missense_Mutation_p.S103C|RALGAPB_uc002xix.2_Missense_Mutation_p.S103C|RALGAPB_uc002xiy.1_Missense_Mutation_p.S103C|RALGAPB_uc002xiz.2_5'UTR	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	103					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						CCAAAAGATTCTATTCCATTG	0.353													49	200					0	0	0.014410	0	0	
PPP1R16B	26051	broad.mit.edu	37	20	37529251	37529251	+	Silent	SNP	G	A	A	rs34142152	byFrequency	TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:37529251G>A	uc002xje.2	+	5	684	c.495G>A	c.(493-495)TCG>TCA	p.S165S	PPP1R16B_uc010ggc.2_Silent_p.S165S	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	165					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CTGTCAACTCGGATGGGAACA	0.587													30	133					0	0	0.012213	0	0	
TOP1	7150	broad.mit.edu	37	20	39750719	39750719	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:39750719G>C	uc002xjl.2	+	20	2365	c.2119G>C	c.(2119-2121)GAC>CAC	p.D707H	uc002xjn.1_Intron	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	707					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	TCAAGCCACAGACCGAGAGGA	0.468			T	NUP98	AML*								7	155					0	0	0.001984	0	0	
PTPRT	11122	broad.mit.edu	37	20	41514542	41514542	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:41514542T>C	uc002xkg.2	-	2	303	c.119A>G	c.(118-120)AAC>AGC	p.N40S	PTPRT_uc010ggj.2_Missense_Mutation_p.N40S	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	40	Extracellular (Potential).|MAM.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ATAACCACAGTTGCTGTAGTG	0.498													14	177					0	0	0.004007	0	0	
JPH2	57158	broad.mit.edu	37	20	42788489	42788489	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:42788489C>T	uc002xli.1	-	2	1811	c.938G>A	c.(937-939)CGC>CAC	p.R313H		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	313	MORN 7.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GCCCTCGTAGCGGAGGCCACT	0.667													28	22					0	0	0.014410	0	0	
SEMG2	6407	broad.mit.edu	37	20	43850999	43850999	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:43850999T>A	uc010ggz.2	+	2	783	c.726T>A	c.(724-726)CAT>CAA	p.H242Q	SEMG2_uc002xnk.2_Missense_Mutation_p.H242Q|SEMG2_uc002xnl.2_Missense_Mutation_p.H242Q	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	242	2-2.|Repeat-rich region.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				ATCCTGCACATCAAGACAGAC	0.378													212	265					0	0	0.014410	0	0	
SYS1-DBNDD2	767557	broad.mit.edu	37	20	44037244	44037244	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:44037244G>C	uc002xnx.2	+	4	633	c.137G>C	c.(136-138)AGA>ACA	p.R46T	DBNDD2_uc002xnz.2_Missense_Mutation_p.R46T|DBNDD2_uc002xoa.2_Missense_Mutation_p.R46T|DBNDD2_uc002xob.2_Missense_Mutation_p.R46T|DBNDD2_uc002xoc.2_Missense_Mutation_p.R46T|DBNDD2_uc002xod.2_Missense_Mutation_p.R46T|DBNDD2_uc002xoe.2_Missense_Mutation_p.R46T|DBNDD2_uc002xof.2_Missense_Mutation_p.R46T|DBNDD2_uc002xog.2_Missense_Mutation_p.R46T	NM_001048225	NP_001041690			SCF apoptosis response protein 1 isoform a												0						GAGTCGCAGAGACGTAAGTCC	0.537													4	210					0	0	0.000602	0	0	
KCNB1	3745	broad.mit.edu	37	20	47989743	47989743	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:47989743T>C	uc002xur.1	-	2	2518	c.2354A>G	c.(2353-2355)AAG>AGG	p.K785R	KCNB1_uc002xus.1_Missense_Mutation_p.K785R	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	785	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CGTGCTGAACTTCGGACTGGT	0.527													12	900					0	0	0.003080	0	0	
KCNB1	3745	broad.mit.edu	37	20	47989961	47989961	+	Silent	SNP	C	T	T	rs139458439		TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:47989961C>T	uc002xur.1	-	2	2300	c.2136G>A	c.(2134-2136)ACG>ACA	p.T712T	KCNB1_uc002xus.1_Silent_p.T712T	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	712	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TGTCCAAAAGCGTGGCACACT	0.597													20	180					0	0	0.012319	0	0	
KCNQ2	3785	broad.mit.edu	37	20	62070073	62070073	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr20:62070073C>T	uc002yey.1	-	7	1105	c.928G>A	c.(928-930)GGC>AGC	p.G310S	KCNQ2_uc002yez.1_Missense_Mutation_p.G310S|KCNQ2_uc002yfa.1_Missense_Mutation_p.G310S|KCNQ2_uc002yfb.1_Missense_Mutation_p.G310S|KCNQ2_uc011aax.1_Missense_Mutation_p.G310S|KCNQ2_uc002yfc.1_Missense_Mutation_p.G310S	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	310	Helical; Name=Segment S6; (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CCCAAGATGCCCTGCAATTCA	0.607													93	30					0	0	0.014410	0	0	
SAMSN1	64092	broad.mit.edu	37	21	15889299	15889299	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr21:15889299C>T	uc002yju.1	-	3	275	c.193G>A	c.(193-195)GGT>AGT	p.G65S	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Missense_Mutation_p.G133S	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	65					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		TTACCCAAACCGCCTCCATTA	0.338													24	29					0	0	0.002780	0	0	
DSCR9	257203	broad.mit.edu	37	21	38593929	38593929	+	RNA	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr21:38593929C>T	uc010gnk.2	+	1		c.1041C>T								Homo sapiens mRNA, complete cds.												0						CTGCATGAAGCCCTGGGCTTT	0.502													14	37					0	0	0.001855	0	0	
TIMP3	7078	broad.mit.edu	37	22	33245467	33245467	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr22:33245467G>C	uc003anb.2	+	2	1336	c.150G>C	c.(148-150)AAG>AAC	p.K50N	SYN3_uc003amx.2_Intron|SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Intron	NM_000362	NP_000353	P35625	TIMP3_HUMAN	tissue inhibitor of metalloproteinase 3	50	NTR.				negative regulation of membrane protein ectodomain proteolysis|visual perception		metal ion binding|metalloendopeptidase inhibitor activity|protein binding			lung(1)	1						TGGGGAAGAAGCTGGTAAAGG	0.542													14	28					0	0	0.003163	0	0	
SCN5A	6331	broad.mit.edu	37	3	38597190	38597190	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:38597190T>G	uc003cio.2	-	26	4693	c.4499A>C	c.(4498-4500)AAG>ACG	p.K1500T	SCN5A_uc003cin.2_Missense_Mutation_p.K1499T|SCN5A_uc003cil.3_Missense_Mutation_p.K1500T|SCN5A_uc010hhi.2_Missense_Mutation_p.K1482T|SCN5A_uc010hhk.2_Missense_Mutation_p.K1499T|SCN5A_uc011ayr.1_Missense_Mutation_p.K1446T	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1500			K -> N.|Missing (in BRS1).		blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGAGCCCAGCTTCTTCATGGC	0.567													10	112					0	0	0.010729	0	0	
CELSR3	1951	broad.mit.edu	37	3	48697355	48697355	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:48697355G>A	uc003cul.2	-	1	2994	c.2713C>T	c.(2713-2715)CGC>TGC	p.R905C	CELSR3_uc003cuf.1_Missense_Mutation_p.R975C	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	905	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCATCAATGCGGAACTGGGGC	0.423													22	91					0	0	0.012319	0	0	
WDR6	11180	broad.mit.edu	37	3	49044890	49044890	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:49044890G>A	uc003cvj.2	+	1	254	c.116G>A	c.(115-117)TGG>TAG	p.W39*	WDR6_uc011bbx.1_Nonsense_Mutation_p.W39*|WDR6_uc011bby.1_Nonsense_Mutation_p.W39*|WDR6_uc010hkn.2_5'UTR|WDR6_uc011bbz.1_5'Flank	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	9					cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		GACTACGTTTGGCCGCGGGCA	0.642													10	38					0	0	0.010729	0	0	
CAMKV	79012	broad.mit.edu	37	3	49897278	49897278	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:49897278G>A	uc003cxt.1	-	11	1172	c.979C>T	c.(979-981)CGG>TGG	p.R327W	CAMKV_uc011bcy.1_Missense_Mutation_p.R252W|CAMKV_uc003cxv.1_Missense_Mutation_p.R299W|CAMKV_uc003cxw.1_Missense_Mutation_p.R159W|CAMKV_uc003cxx.1_Missense_Mutation_p.R159W|CAMKV_uc003cxu.2_Missense_Mutation_p.R327W|CAMKV_uc011bcz.1_Missense_Mutation_p.R290W|CAMKV_uc011bda.1_Missense_Mutation_p.R284W	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	327						cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		TCTGGTGCCCGGAGCCGTTTC	0.637													11	33					0	0	0.013537	0	0	
SEMA3B	7869	broad.mit.edu	37	3	50311057	50311057	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:50311057A>G	uc003cyu.2	+	10	1144	c.902A>G	c.(901-903)GAC>GGC	p.D301G	SEMA3B_uc003cyt.2_Missense_Mutation_p.D301G|SEMA3B_uc003cyv.2_Missense_Mutation_p.D188G|SEMA3B_uc003cyw.2_5'UTR|SEMA3B_uc010hli.2_Missense_Mutation_p.D188G|SEMA3B_uc003cyx.2_Missense_Mutation_p.D188G|SEMA3B_uc003cyy.2_5'UTR|SEMA3B_uc011bdo.1_5'UTR	NM_004636	NP_004627	Q13214	SEM3B_HUMAN	semaphorin 3B isoform 1 precursor	301	Sema.				axon guidance|cell-cell signaling	endoplasmic reticulum|extracellular region|membrane	receptor activity			lung(2)|central_nervous_system(2)|kidney(1)|skin(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GTCGAGGGCGACACCCACTTC	0.716											OREG0015583	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	66					0	0	0.007291	0	0	
PXK	54899	broad.mit.edu	37	3	58376310	58376310	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:58376310G>T	uc003djz.1	+	5	489	c.390G>T	c.(388-390)GAG>GAT	p.E130D	PXK_uc003djx.1_Missense_Mutation_p.E130D|PXK_uc003djy.1_Missense_Mutation_p.E113D|PXK_uc003dka.1_Missense_Mutation_p.E130D|PXK_uc003dkb.1_Missense_Mutation_p.E47D|PXK_uc003dkc.1_Missense_Mutation_p.E113D|PXK_uc011bfe.1_Missense_Mutation_p.E97D|PXK_uc010hnj.1_Missense_Mutation_p.E97D|PXK_uc003dkd.1_5'UTR|PXK_uc010hnk.1_Intron	NM_017771	NP_060241	Q7Z7A4	PXK_HUMAN	PX domain containing serine/threonine kinase	130	Protein kinase.				cell communication|inflammatory response|negative regulation of ATPase activity|negative regulation of ion transport|regulation of synaptic transmission	centrosome|cytoplasm|nucleus|plasma membrane	actin binding|ATP binding|phosphatidylinositol binding|phosphatidylinositol binding|protein C-terminus binding|protein kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000249)|KIRC - Kidney renal clear cell carcinoma(10;0.00346)|Kidney(10;0.00368)|OV - Ovarian serous cystadenocarcinoma(275;0.22)		TCTTTGCAGAGATTGCCTTGC	0.413													9	52					1.58986e-06	1.80091e-06	0.008291	1	0	
ROBO2	6092	broad.mit.edu	37	3	77657104	77657104	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:77657104G>T	uc003dpy.3	+	21	3935	c.3292G>T	c.(3292-3294)GGC>TGC	p.G1098C	ROBO2_uc003dpz.2_Missense_Mutation_p.G1102C|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.G1102C|ROBO2_uc003dqa.2_Missense_Mutation_p.G225C	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1098	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		ACAAGAAAATGGGTAAAGATA	0.478													16	44					3.52763e-06	3.98415e-06	0.004990	1	0	
PARP14	54625	broad.mit.edu	37	3	122422676	122422676	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:122422676G>C	uc003efq.3	+	7	3228	c.3169G>C	c.(3169-3171)GAG>CAG	p.E1057Q	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.E774Q|PARP14_uc003efs.1_Missense_Mutation_p.E774Q	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	1057	Macro 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		AGCTGGACCAGAGCTCCAGGA	0.507													25	86					0	0	0.003954	0	0	
TMEM22	80723	broad.mit.edu	37	3	136573735	136573735	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:136573735G>T	uc003erf.3	+	2	647	c.433G>T	c.(433-435)GTC>TTC	p.V145F	TMEM22_uc003erg.3_Missense_Mutation_p.V145F|TMEM22_uc010hub.2_Missense_Mutation_p.V145F	NM_001097600	NP_001091069	Q8TBE7	TMM22_HUMAN	transmembrane protein 22	145	DUF6 1.|Helical; (Potential).					Golgi apparatus|integral to membrane				ovary(1)	1						TGTTTTTCAGGTCTTATCTGT	0.413													103	321					1.7666e-45	2.21691e-45	0.014410	1	0	
PRR23B	389151	broad.mit.edu	37	3	138739163	138739163	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:138739163G>A	uc003esy.1	-	1	606	c.341C>T	c.(340-342)GCG>GTG	p.A114V		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	114										breast(1)	1						GTCGTGCTGCGCTCCTGAGCG	0.632													138	104					0	0	0.014410	0	0	
XRN1	54464	broad.mit.edu	37	3	142102207	142102207	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:142102207C>T	uc003eus.2	-	22	2618	c.2551G>A	c.(2551-2553)GAT>AAT	p.D851N	XRN1_uc010huu.2_Missense_Mutation_p.D317N|XRN1_uc003eut.2_Missense_Mutation_p.D851N|XRN1_uc003euu.2_Missense_Mutation_p.D851N|XRN1_uc003euv.1_Missense_Mutation_p.D712N	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	851					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						GGAAACAAATCATCCAATGTT	0.348													30	141					0	0	0.003755	0	0	
AHSG	197	broad.mit.edu	37	3	186335007	186335007	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr3:186335007A>G	uc003fqk.3	+	4	522	c.441A>G	c.(439-441)CAA>CAG	p.Q147Q	AHSG_uc003fqj.2_Silent_p.Q147Q|AHSG_uc003fql.3_Silent_p.Q148Q|AHSG_uc003fqm.3_Silent_p.Q146Q|AHSG_uc010hyp.2_Silent_p.Q110Q	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	147	Cystatin fetuin-A-type 2.				acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		AGGTGTGCCAAGACTGCCCCC	0.637											OREG0015968	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	151					0	0	0.003330	0	0	
STK32B	55351	broad.mit.edu	37	4	5468493	5468493	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:5468493C>A	uc003gih.1	+	10	1037	c.973C>A	c.(973-975)CTT>ATT	p.L325I	STK32B_uc010ida.1_Missense_Mutation_p.L278I	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	325							ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						ATCCAAGCCACTTCACAAAAA	0.498													16	41					6.44725e-10	7.57108e-10	0.014323	1	0	
DRD5	1816	broad.mit.edu	37	4	9784423	9784423	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:9784423G>A	uc003gmb.3	+	1	1166	c.770G>A	c.(769-771)CGC>CAC	p.R257H		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	257	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GTGCAGATCCGCAGGATTTCC	0.632													13	30					0	0	0.002450	0	0	
SLC34A2	10568	broad.mit.edu	37	4	25678198	25678198	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:25678198G>C	uc003grr.2	+	13	1981	c.1900G>C	c.(1900-1902)GGC>CGC	p.G634R	SLC34A2_uc003grs.2_Missense_Mutation_p.D633H|SLC34A2_uc010iev.2_Missense_Mutation_p.D633H	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	634	Cys-rich.|Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				cttgctgtgtgactgccccaa	0.343													11	21					0	0	0.003163	0	0	
COX18	285521	broad.mit.edu	37	4	73927606	73927606	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:73927606C>T	uc003hgm.1	-	5	858	c.752G>A	c.(751-753)CGT>CAT	p.R251H	COX18_uc003hgn.1_Missense_Mutation_p.R100H|COX18_uc011cbc.1_Missense_Mutation_p.R252H|COX18_uc010iih.1_Missense_Mutation_p.R251H	NM_173827	NP_776188	Q8N8Q8	COX18_HUMAN	mitochondrial COX18 precursor	251					protein insertion into mitochondrial membrane|respiratory chain complex IV assembly	integral to mitochondrial inner membrane	protein transporter activity				0	Breast(15;0.00096)		Epithelial(6;1.26e-06)|OV - Ovarian serous cystadenocarcinoma(6;9.45e-06)|all cancers(17;2.05e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CGTCTGAAAACGAGACATTCC	0.368													12	48					0	0	0.013537	0	0	
UNC5C	8633	broad.mit.edu	37	4	96091445	96091445	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:96091445C>T	uc003htp.1	-	15	2644	c.2490G>A	c.(2488-2490)GCG>GCA	p.A830A	uc003hto.2_5'Flank	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	830	Cytoplasmic (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TGATGGTGTTCGCAGGATCCA	0.552													26	328					0	0	0.006320	0	0	
C4orf21	55345	broad.mit.edu	37	4	113539455	113539455	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:113539455A>G	uc003iau.2	-	6	1954	c.1743T>C	c.(1741-1743)TGT>TGC	p.C581C	C4orf21_uc003iaw.2_Silent_p.C581C	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		CAATCTCTTCACAGTTTGTAT	0.378													49	138					0	0	0.014410	0	0	
LRBA	987	broad.mit.edu	37	4	151836777	151836777	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:151836777A>C	uc010ipj.2	-	8	1471	c.997T>G	c.(997-999)TTT>GTT	p.F333V	LRBA_uc003ilu.3_Missense_Mutation_p.F333V|LRBA_uc010ipk.1_Missense_Mutation_p.F252V	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	333						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					GTGTTGACAAACCATGTTATC	0.338													8	61					0	0	0.003080	0	0	
FGB	2244	broad.mit.edu	37	4	155487704	155487704	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:155487704A>G	uc003ioa.3	+	3	409	c.370A>G	c.(370-372)AGA>GGA	p.R124G	FGB_uc010ipu.1_RNA|FGB_uc003iob.3_Missense_Mutation_p.R121G|FGB_uc010ipv.2_Missense_Mutation_p.R62G|FGB_uc010ipw.2_Missense_Mutation_p.R121G|FGB_uc003ioc.3_Intron	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	124					platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	AAGGCCAATCAGAAATAGTGT	0.413													12	199					0	0	0.002450	0	0	
FNIP2	57600	broad.mit.edu	37	4	159825674	159825674	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:159825674A>T	uc003iqe.3	+	17	3506	c.3323A>T	c.(3322-3324)TAT>TTT	p.Y1108F	C4orf45_uc003iqf.1_Intron|C4orf45_uc010iqt.1_Intron	NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	1108					DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		CATTCTCCTTATGTGGCTCAA	0.368													14	207					0	0	0.004990	0	0	
FSTL5	56884	broad.mit.edu	37	4	162307171	162307171	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:162307171C>T	uc003iqh.2	-	16	2708	c.2272G>A	c.(2272-2274)GGT>AGT	p.G758S	FSTL5_uc003iqi.2_Missense_Mutation_p.G757S|FSTL5_uc010iqv.2_Missense_Mutation_p.G748S|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	758						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CTTGAACTACCGTAGATGTTA	0.418													29	114					0	0	0.008361	0	0	
UFSP2	55325	broad.mit.edu	37	4	186336377	186336377	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:186336377T>A	uc003ixo.2	-	6	733	c.616A>T	c.(616-618)AAA>TAA	p.K206*	UFSP2_uc003ixn.2_Nonsense_Mutation_p.K96*|UFSP2_uc003ixq.2_Nonsense_Mutation_p.K96*|UFSP2_uc003ixp.2_RNA	NM_018359	NP_060829	Q9NUQ7	UFSP2_HUMAN	UFM1-specific peptidase 2	206						endoplasmic reticulum|nucleus	small conjugating protein-specific protease activity				0		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;0.00109)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;3.4e-25)|Epithelial(43;2.23e-22)|OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;8.1e-05)|GBM - Glioblastoma multiforme(59;0.000148)|STAD - Stomach adenocarcinoma(60;0.000782)|LUSC - Lung squamous cell carcinoma(40;0.00939)|COAD - Colon adenocarcinoma(29;0.0108)|READ - Rectum adenocarcinoma(43;0.166)		AGATTTTTTTTCCCTGGTAAT	0.343													26	73					0	0	0.006320	0	0	
PDLIM3	27295	broad.mit.edu	37	4	186423589	186423589	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr4:186423589G>A	uc003ixw.3	-	8	1078	c.954C>T	c.(952-954)TTC>TTT	p.F318F	PDLIM3_uc003ixx.3_Silent_p.F270F|PDLIM3_uc010isi.2_RNA	NM_014476	NP_055291	Q53GG5	PDLI3_HUMAN	PDZ and LIM domain protein 3 isoform a	318	LIM zinc-binding.					sarcomere	zinc ion binding			ovary(2)	2		all_lung(41;1.03e-13)|Lung NSC(41;2.49e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.00996)|Colorectal(36;0.0161)|all_hematologic(60;0.0592)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.4e-10)|BRCA - Breast invasive adenocarcinoma(30;8.64e-05)|GBM - Glioblastoma multiforme(59;0.000167)|STAD - Stomach adenocarcinoma(60;0.000828)|LUSC - Lung squamous cell carcinoma(40;0.00984)|COAD - Colon adenocarcinoma(29;0.0115)|READ - Rectum adenocarcinoma(43;0.171)		CGGCACACACGAAGCACTCAG	0.532													48	143					0	0	0.014410	0	0	
ADCY2	108	broad.mit.edu	37	5	7707834	7707834	+	Silent	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:7707834T>C	uc003jdz.1	+	9	1351	c.1284T>C	c.(1282-1284)TCT>TCC	p.S428S	ADCY2_uc011cmo.1_Silent_p.S248S	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	428	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						TTCACATTTCTTCTGTCACCC	0.388													79	169					0	0	0.014410	0	0	
SEMA5A	9037	broad.mit.edu	37	5	9066581	9066581	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:9066581C>T	uc003jek.2	-	17	2963	c.2251G>A	c.(2251-2253)GAA>AAA	p.E751K		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	751	TSP type-1 4.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						TACCGCATTTCGATTCTCTGT	0.542													75	272					0	0	0.014410	0	0	
DNAH5	1767	broad.mit.edu	37	5	13708305	13708305	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:13708305A>G	uc003jfd.2	-	76	13307	c.13265T>C	c.(13264-13266)ATC>ACC	p.I4422T	DNAH5_uc003jfc.2_Missense_Mutation_p.I590T	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4422					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTCATGATGATGGTGCCATC	0.453									Kartagener_syndrome				177	229					0	0	0.014410	0	0	
FBXL7	23194	broad.mit.edu	37	5	15936809	15936809	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:15936809C>T	uc003jfn.1	+	4	1471	c.990C>T	c.(988-990)AGC>AGT	p.S330S		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	330	LRR 6.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						AGGAGCTGAGCGTCAGCGACT	0.677													4	12					0	0	0.000602	0	0	
C5orf23	79614	broad.mit.edu	37	5	32789806	32789806	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:32789806T>G	uc003jhw.1	+	1	862	c.299T>G	c.(298-300)GTT>GGT	p.V100G		NM_024563	NP_078839			hypothetical protein LOC79614												0						TTCCTTTTAGTTATGGCTGAT	0.413													41	151					0	0	0.011902	0	0	
AGXT2	64902	broad.mit.edu	37	5	34998853	34998853	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:34998853T>G	uc003jjf.2	-	14	1595	c.1516A>C	c.(1516-1518)ACC>CCC	p.T506P	AGXT2_uc003jje.1_Missense_Mutation_p.T159P|AGXT2_uc011com.1_Missense_Mutation_p.T431P	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	506					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	ATGTGTTGGGTTAAGGCAGAA	0.378													49	73					0	0	0.014410	0	0	
AGXT2	64902	broad.mit.edu	37	5	35035336	35035336	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:35035336A>T	uc003jjf.2	-	5	651	c.572T>A	c.(571-573)ATT>AAT	p.I191N	AGXT2_uc011com.1_Missense_Mutation_p.I191N|AGXT2_uc011con.1_Missense_Mutation_p.I99N	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	191					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	CCTGAAAGAAATGATGTCTAT	0.448													41	169					0	0	0.009718	0	0	
IL7R	3575	broad.mit.edu	37	5	35861002	35861002	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:35861002G>T	uc003jjs.2	+	2	220	c.131G>T	c.(130-132)AGC>ATC	p.S44I	IL7R_uc011coo.1_Missense_Mutation_p.S44I|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	44	Extracellular (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TCATGCTATAGCCAGTTGGAA	0.438													86	210					1.52795e-29	1.89268e-29	0.014410	1	0	
NIPBL	25836	broad.mit.edu	37	5	36984938	36984938	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:36984938C>T	uc003jkl.3	+	10	2155	c.1656C>T	c.(1654-1656)GAC>GAT	p.D552D	NIPBL_uc003jkk.3_Silent_p.D552D|NIPBL_uc003jkm.1_Silent_p.D431D	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	552					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			GAAGAGTGGACTCTCAGGCTT	0.433													368	413					0	0	0.014410	0	0	
VCAN	1462	broad.mit.edu	37	5	82816513	82816513	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:82816513A>T	uc003kii.3	+	7	2744	c.2388A>T	c.(2386-2388)GAA>GAT	p.E796D	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.E796D|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	796	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TAAGTGTTGAAGCAGCCACTG	0.403													6	113					0	0	0.003080	0	0	
MCTP1	79772	broad.mit.edu	37	5	94114844	94114844	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:94114844C>T	uc003kkx.2	-	19	2581	c.2581G>A	c.(2581-2583)GAG>AAG	p.E861K	MCTP1_uc003kkv.2_Missense_Mutation_p.E640K|MCTP1_uc003kkw.2_Missense_Mutation_p.E554K|MCTP1_uc003kku.2_Missense_Mutation_p.E377K	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	861					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		TCTTCTTCCTCGTCCTCTAGC	0.423													6	114					0	0	0.001168	0	0	
DMXL1	1657	broad.mit.edu	37	5	118484729	118484729	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:118484729A>G	uc003ksd.2	+	18	3388	c.3207A>G	c.(3205-3207)AGA>AGG	p.R1069R	DMXL1_uc010jcl.1_Silent_p.R1069R	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1069										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		CTAATAGTAGATCTTCCCAGG	0.398													169	187					0	0	0.014410	0	0	
FTMT	94033	broad.mit.edu	37	5	121188128	121188128	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:121188128T>G	uc003kss.2	+	1	479	c.470T>G	c.(469-471)CTG>CGG	p.L157R		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	157	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		GAAAGCGGGCTGCATGCCATG	0.572													7	158					0	0	0.003080	0	0	
FBN2	2201	broad.mit.edu	37	5	127607789	127607789	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:127607789T>G	uc003kuu.2	-	62	8301	c.7862A>C	c.(7861-7863)AAC>ACC	p.N2621T		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2621	EGF-like 45; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GCACCTGTGGTTCCCATCACA	0.498													37	91					0	0	0.007835	0	0	
PCDHA6	56142	broad.mit.edu	37	5	140209209	140209209	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:140209209C>T	uc003lho.2	+	1	1560	c.1533C>T	c.(1531-1533)CAC>CAT	p.H511H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.H511H|PCDHA6_uc011dab.1_Silent_p.H511H	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	511	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTCGGTGCACGCGGAGAGCG	0.701													85	98					0	0	0.014410	0	0	
PCDHAC1	56135	broad.mit.edu	37	5	140308755	140308755	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:140308755C>G	uc003lih.2	+	1	2454	c.2278C>G	c.(2278-2280)CTG>GTG	p.L760V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.L760V	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	760	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGGGCCTCTCTGGGACTTGG	0.463													5	153					0	0	0.000602	0	0	
PCDHGA4	56111	broad.mit.edu	37	5	140734941	140734941	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:140734941G>A	uc003ljq.1	+	1	174	c.174G>A	c.(172-174)GAG>GAA	p.E58E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Silent_p.E58E	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	58	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCCCCGGGAGCTGGCGGAGC	0.627													14	121					0	0	0.004990	0	0	
PCDHGB3	56102	broad.mit.edu	37	5	140752271	140752271	+	Silent	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:140752271A>C	uc003ljw.1	+	1	2310	c.2310A>C	c.(2308-2310)ATA>ATC	p.I770I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.I770I|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	770	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTCAATATAAAGGCTGAAA	0.423													41	35					0	0	0.009718	0	0	
LARS	51520	broad.mit.edu	37	5	145529216	145529216	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:145529216T>C	uc003lnx.1	-	15	1710	c.1472A>G	c.(1471-1473)AAG>AGG	p.K491R	LARS_uc011dbq.1_Missense_Mutation_p.K445R|LARS_uc011dbr.1_Missense_Mutation_p.K437R|LARS_uc011dbs.1_Missense_Mutation_p.K464R	NM_020117	NP_064502	Q9P2J5	SYLC_HUMAN	leucyl-tRNA synthetase	491	Editing domain.				leucyl-tRNA aminoacylation	cytosol	ATP binding|leucine-tRNA ligase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Leucine(DB00149)	AATAGTCTTCTTTACATCTTG	0.373													142	172					0	0	0.014410	0	0	
TCERG1	10915	broad.mit.edu	37	5	145859463	145859463	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:145859463C>G	uc003lob.2	+	11	1848	c.1808C>G	c.(1807-1809)TCT>TGT	p.S603C	TCERG1_uc003loc.2_Missense_Mutation_p.S582C|TCERG1_uc011dbt.1_Missense_Mutation_p.S582C	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	603					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGCAATTCTCTATGAGTGCA	0.363													17	52					0	0	0.006122	0	0	
TTC1	7265	broad.mit.edu	37	5	159478161	159478161	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:159478161G>T	uc003lxu.2	+	7	766	c.716G>T	c.(715-717)CGT>CTT	p.R239L		NM_003314	NP_003305	Q99614	TTC1_HUMAN	tetratricopeptide repeat domain 1	239					protein folding		unfolded protein binding			skin(1)	1	Renal(175;0.00196)	all_hematologic(541;0.00014)|Breast(839;0.0101)|all_neural(177;0.0281)|Medulloblastoma(196;0.0425)|Lung NSC(249;0.119)|all_lung(500;0.163)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	Epithelial(171;8.37e-05)|all cancers(165;0.000694)|OV - Ovarian serous cystadenocarcinoma(192;0.0402)		ATTGAAGAACGTAATGAAAGA	0.348													9	149					1.12685e-05	1.26155e-05	0.004482	1	0	
MAML1	9794	broad.mit.edu	37	5	179193287	179193287	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:179193287C>A	uc003mkm.2	+	2	1539	c.1276C>A	c.(1276-1278)CAG>AAG	p.Q426K	MAML1_uc003mkn.1_Missense_Mutation_p.Q426K	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	426					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGCCCCGGGCCAGATGTCCAC	0.632													30	243					9.62906e-15	1.15189e-14	0.006230	1	0	
BTNL9	153579	broad.mit.edu	37	5	180477150	180477150	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr5:180477150C>T	uc003mmt.2	+	4	748	c.517C>T	c.(517-519)CTC>TTC	p.L173F	BTNL9_uc011dhi.1_Missense_Mutation_p.L104F	NM_152547	NP_689760	Q6UXG8	BTNL9_HUMAN	butyrophilin-like 9 precursor	173	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(89;2.45e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCAGCTGAGGCTCAGATCCAG	0.597													64	46					0	0	0.014410	0	0	
HIST1H2AD	3013	broad.mit.edu	37	6	26199112	26199112	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:26199112C>G	uc003ngw.2	-	1	360	c.360G>C	c.(358-360)AAG>AAC	p.K120N	HIST1H3D_uc003ngv.2_5'UTR|HIST1H2BF_uc003ngx.2_5'Flank	NM_021065	NP_066409	P20671	H2A1D_HUMAN	histone cluster 1, H2ad	120					nucleosome assembly	nucleosome|nucleus	DNA binding				0		all_hematologic(11;0.196)				GACTCTCAGTCTTCTTGGGGA	0.493													26	104					0	0	0.006320	0	0	
ABT1	29777	broad.mit.edu	37	6	26598628	26598628	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:26598628G>A	uc003nii.2	+	3	605	c.574G>A	c.(574-576)GGA>AGA	p.G192R		NM_013375	NP_037507	Q9ULW3	ABT1_HUMAN	activator of basal transcription 1	192					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleolus	DNA binding|nucleotide binding|protein binding|RNA binding|transcription coactivator activity			ovary(1)	1						TGTGGAACGGGGACAACGCTT	0.612													22	78					0	0	0.003330	0	0	
CYP21A2	1589	broad.mit.edu	37	6	32007956	32007956	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:32007956G>A	uc003nze.1	+	7	1031	c.913G>A	c.(913-915)GTG>ATG	p.V305M	CYP21A2_uc003nzf.1_Missense_Mutation_p.V275M	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	304			V -> M (in hyperandrogenism; due to 21- hydroxylase deficiency; non-classic type; residual activity of 46% for conversion of 17-hydroxyprogesterone and 26% for conversion of progesterone compared with the normal enzyme).		glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						CTCCTGGGCCGTGGTTTTTTT	0.617													167	282					0	0	0.014410	0	0	
NOTCH4	4855	broad.mit.edu	37	6	32168997	32168997	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:32168997G>A	uc003obb.2	-	22	4175	c.4036C>T	c.(4036-4038)CGG>TGG	p.R1346W	NOTCH4_uc003oba.2_Missense_Mutation_p.R9W|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1346	Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						TCTTCAGCCCGGGCCCCAGGA	0.622													8	151					0	0	0.004482	0	0	
DNAH8	1769	broad.mit.edu	37	6	38850763	38850763	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:38850763T>G	uc003ooe.1	+	52	7885	c.7285T>G	c.(7285-7287)TTG>GTG	p.L2429V		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTCATCAATTTTGGTTCCAAA	0.289													8	226					0	0	0.003080	0	0	
CDC5L	988	broad.mit.edu	37	6	44371709	44371709	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:44371709C>G	uc003oxl.2	+	6	962	c.703C>G	c.(703-705)CTT>GTT	p.L235V		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	235	Potential.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CTACCAAGCTCTTGACGCAGA	0.388													110	100					0	0	0.014410	0	0	
DEFB112	245915	broad.mit.edu	37	6	50016282	50016282	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:50016282T>G	uc011dws.1	-	1	83	c.83A>C	c.(82-84)AAG>ACG	p.K28T		NM_001037498	NP_001032587	Q30KQ8	DB112_HUMAN	beta-defensin 112 precursor	28					defense response to bacterium	extracellular region				central_nervous_system(1)	1	Lung NSC(77;0.042)					ATGTCGGGCCTTTTCAAATAT	0.323													12	98					0	0	0.004007	0	0	
DST	667	broad.mit.edu	37	6	56417119	56417119	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:56417119T>C	uc003pdf.2	-	55	10142	c.10114A>G	c.(10114-10116)ATT>GTT	p.I3372V	DST_uc003pcz.3_Missense_Mutation_p.I3194V|DST_uc011dxj.1_Missense_Mutation_p.I3223V|DST_uc011dxk.1_Missense_Mutation_p.I3234V|DST_uc003pcy.3_Missense_Mutation_p.I2868V	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	5280					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AGGCGCTTAATTGTCCCTTCA	0.438													31	88					0	0	0.004289	0	0	
FAM135A	57579	broad.mit.edu	37	6	71185403	71185403	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:71185403C>T	uc003pfj.2	+	5	468	c.335C>T	c.(334-336)TCC>TTC	p.S112F	FAM135A_uc003pfi.2_Missense_Mutation_p.S112F|FAM135A_uc003pfh.2_Missense_Mutation_p.S69F|FAM135A_uc003pfk.2_Missense_Mutation_p.S112F|FAM135A_uc003pfl.2_5'UTR	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	112										central_nervous_system(1)	1						TTTCTATTATCCTTGGATCTA	0.284													29	41					0	0	0.003755	0	0	
AIM1	202	broad.mit.edu	37	6	106987348	106987348	+	Silent	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:106987348T>C	uc003prh.2	+	7	4052	c.3565T>C	c.(3565-3567)TTG>CTG	p.L1189L	AIM1_uc003pri.2_5'Flank	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1189	Beta/gamma crystallin 'Greek key' 4.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		ATACCCTGACTTGTCCTTCTG	0.443													8	222					0	0	0.004482	0	0	
LAMA4	3910	broad.mit.edu	37	6	112441542	112441542	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:112441542G>A	uc003pvu.2	-	33	4918	c.4609C>T	c.(4609-4611)CAC>TAC	p.H1537Y	LAMA4_uc003pvv.2_Missense_Mutation_p.H1530Y|LAMA4_uc003pvt.2_Missense_Mutation_p.H1530Y	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	1537	Laminin G-like 4.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		AGTTTTTTGTGACCAACATTA	0.418													15	141					0	0	0.004990	0	0	
RBM16	22828	broad.mit.edu	37	6	155153435	155153435	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:155153435T>G	uc003qqa.2	+	21	2954	c.2722T>G	c.(2722-2724)TTA>GTA	p.L908V	TIAM2_uc003qqb.2_5'Flank|RBM16_uc011efj.1_Missense_Mutation_p.L974V|RBM16_uc011efk.1_Missense_Mutation_p.L953V|RBM16_uc003qpz.2_Missense_Mutation_p.L908V|RBM16_uc010kji.2_Intron	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	908	Pro-rich.				mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		ACCTCAAAACTTACCCCCTTT	0.463													12	500					0	0	0.013537	0	0	
AGPAT4	56895	broad.mit.edu	37	6	161653179	161653179	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr6:161653179C>A	uc003qtr.1	-	2	294	c.67G>T	c.(67-69)GCC>TCC	p.A23S	AGPAT4_uc003qts.1_5'UTR|AGPAT4_uc011egb.1_Missense_Mutation_p.A23S|AGPAT4_uc003qtt.1_RNA|AGPAT4_uc011egc.1_Missense_Mutation_p.A23S|AGPAT4_uc011egd.1_Intron|AGPAT4_uc011ege.1_Missense_Mutation_p.A23S	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	23	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		AGCCCTGAGGCAATAAAGACG	0.493													46	76					2.64894e-19	3.20881e-19	0.014410	1	0	
SDK1	221935	broad.mit.edu	37	7	3678640	3678640	+	Missense_Mutation	SNP	A	G	G	rs150477138		TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:3678640A>G	uc003smx.2	+	3	602	c.463A>G	c.(463-465)ATT>GTT	p.I155V		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	155	Ig-like C2-type 1.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CAACAGGTACATTATTCCATC	0.413													3	27					0	0	0.004672	0	0	
ITGB8	3696	broad.mit.edu	37	7	20438557	20438557	+	Silent	SNP	T	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:20438557T>C	uc003suu.2	+	9	1926	c.1221T>C	c.(1219-1221)TGT>TGC	p.C407C	ITGB8_uc011jyh.1_Silent_p.C272C|ITGB8_uc003sut.2_Silent_p.C407C	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	407	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						CCGCCATCTGTCCAGATGGGT	0.403													3	87					0	0	0.004672	0	0	
CCDC129	223075	broad.mit.edu	37	7	31611789	31611789	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:31611789A>C	uc003tcj.1	+	6	1375	c.382A>C	c.(382-384)AGT>CGT	p.S128R	CCDC129_uc011kad.1_Missense_Mutation_p.S138R|CCDC129_uc003tci.1_Missense_Mutation_p.S127R|CCDC129_uc011kae.1_Missense_Mutation_p.S154R|CCDC129_uc003tck.1_Missense_Mutation_p.S36R	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	128											0						TTCTACTGCAAGTGTACCACA	0.373													8	21					0	0	0.003080	0	0	
TXNDC3	51314	broad.mit.edu	37	7	37890302	37890302	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:37890302G>T	uc003tfn.2	+	5	535	c.163G>T	c.(163-165)GAA>TAA	p.E55*		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	55	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						ATTGAAAAATGAACTGAACGA	0.318									Kartagener_syndrome				27	60					3.65163e-15	4.38195e-15	0.006320	1	0	
TXNDC3	51314	broad.mit.edu	37	7	37890313	37890313	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:37890313A>G	uc003tfn.2	+	5	546	c.174A>G	c.(172-174)GAA>GAG	p.E58E		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	58	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AACTGAACGAAGACGAAATTC	0.318									Kartagener_syndrome				25	53					0	0	0.003954	0	0	
TXNDC3	51314	broad.mit.edu	37	7	37936592	37936592	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:37936592G>T	uc003tfn.2	+	17	2037	c.1665G>T	c.(1663-1665)CAG>CAT	p.Q555H		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	555	NDK 3.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TCCGAGCCCAGTTTGGAATAA	0.433									Kartagener_syndrome				46	68					1.35964e-18	1.64183e-18	0.014410	1	0	
HECW1	23072	broad.mit.edu	37	7	43477736	43477736	+	Silent	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:43477736C>T	uc003tid.1	+	9	1541	c.936C>T	c.(934-936)CAC>CAT	p.H312H	HECW1_uc011kbi.1_Silent_p.H312H|HECW1_uc003tie.1_Silent_p.H344H	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	312					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TGGAGAGACACGCCATAGGGT	0.512													16	73					0	0	0.007413	0	0	
ZNF479	90827	broad.mit.edu	37	7	57188491	57188492	+	Missense_Mutation	DNP	TC	GA	GA			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:57188491_57188492TC>GA	uc010kzo.2	-	5	901_902	c.630_631GA>TC	c.(628-633)GAGAAG>GATCAG	p.210_211EK>DQ		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	210_211	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTGTAGGACTTCTCCCTAGTAT	0.332													19	22					0	0	0.004672	0	0	
ZNF107	51427	broad.mit.edu	37	7	64167982	64167982	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:64167982C>A	uc003ttd.2	+	7	2086	c.1300C>A	c.(1300-1302)CAT>AAT	p.H434N	ZNF107_uc003tte.2_Missense_Mutation_p.H434N	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	434	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TAAGAAAATTCATACTGGAGA	0.353													5	66					0.000602214	0.000666427	0.000602	1	0	
AUTS2	26053	broad.mit.edu	37	7	69364285	69364285	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:69364285T>G	uc003tvw.3	+	2	1066	c.323T>G	c.(322-324)CTT>CGT	p.L108R	AUTS2_uc003tvv.3_Missense_Mutation_p.L108R|AUTS2_uc003tvx.3_Missense_Mutation_p.L108R	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	108										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		GATGTAGCACTTAAGCCTCAG	0.443													36	93					0	0	0.003271	0	0	
ABCB4	5244	broad.mit.edu	37	7	87035760	87035760	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:87035760A>G	uc003uiv.1	-	26	3427	c.3351T>C	c.(3349-3351)GCT>GCC	p.A1117A	ABCB4_uc003uiw.1_Silent_p.A1110A|ABCB4_uc003uix.1_Silent_p.A1063A	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1117	ABC transporter 2.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TTCCGAGTTGAGCTCTGAGCC	0.428													22	82					0	0	0.014323	0	0	
ZNF804B	219578	broad.mit.edu	37	7	88964302	88964302	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:88964302A>T	uc011khi.1	+	4	2544	c.2006A>T	c.(2005-2007)CAT>CTT	p.H669L		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	669						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CACAGTGACCATGGGAAAGAC	0.428										HNSCC(36;0.09)			30	99					0	0	0.008361	0	0	
STEAP1	26872	broad.mit.edu	37	7	89790313	89790313	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:89790313A>C	uc003ujx.2	+	3	479	c.279A>C	c.(277-279)GAA>GAC	p.E93D	STEAP1_uc010lem.2_Missense_Mutation_p.E93D	NM_012449	NP_036581	Q9UHE8	STEA1_HUMAN	six transmembrane epithelial antigen of the	93					electron transport chain|ion transport|iron ion homeostasis	cell-cell junction|endosome membrane|integral to plasma membrane	channel activity|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	all_hematologic(106;0.112)					TTCTGAGGGAAGTAATTCACC	0.388													19	194					0	0	0.010504	0	0	
GATS	352954	broad.mit.edu	37	7	99831243	99831243	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:99831243A>G	uc003uua.3	-	2	450	c.201T>C	c.(199-201)GAT>GAC	p.D67D	GATS_uc003uty.3_RNA|GATS_uc003utz.3_RNA|GATS_uc010lgt.2_RNA|GATS_uc010lgu.2_RNA	NM_178831	NP_849153	Q8NAP1	GATS_HUMAN	GATS, stromal antigen 3 opposite strand	67											0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ATCCTTCCTCATCGACAATGA	0.517													83	154					0	0	0.014410	0	0	
PLOD3	8985	broad.mit.edu	37	7	100853950	100853950	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:100853950C>T	uc003uyd.2	-	13	1819	c.1363G>A	c.(1363-1365)GTG>ATG	p.V455M	PLOD3_uc010lhs.2_Missense_Mutation_p.V20M	NM_001084	NP_001075	O60568	PLOD3_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	455					protein modification process	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2	Lung NSC(181;0.168)|all_lung(186;0.215)				Succinic acid(DB00139)|Vitamin C(DB00126)	ACATTCCACACACCCCTGGAG	0.607													23	65					0	0	0.005443	0	0	
ARMC10	83787	broad.mit.edu	37	7	102715814	102715814	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:102715814G>C	uc003vaw.1	+	1	487	c.95G>C	c.(94-96)CGG>CCG	p.R32P	FBXL13_uc003vaq.2_5'Flank|FBXL13_uc010lir.1_5'Flank|FBXL13_uc003var.2_5'Flank|FBXL13_uc003vas.2_5'Flank|FBXL13_uc003vav.2_5'Flank|ARMC10_uc003vay.1_Missense_Mutation_p.R32P|ARMC10_uc003vax.1_Missense_Mutation_p.R32P|ARMC10_uc003vbb.1_Missense_Mutation_p.R32P|ARMC10_uc011kli.1_Missense_Mutation_p.R32P|ARMC10_uc010lis.1_Missense_Mutation_p.R32P|ARMC10_uc003vba.1_RNA|ARMC10_uc003vaz.1_5'UTR	NM_031905	NP_114111	Q8N2F6	ARM10_HUMAN	SVH protein isoform a	32					regulation of growth	endoplasmic reticulum membrane|integral to membrane	binding			ovary(1)	1						CGGGGTCGGCGGCGGGGCGAC	0.766													2	5					0	0	0.004672	0	0	
PRKAR2B	5577	broad.mit.edu	37	7	106786820	106786820	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:106786820G>T	uc003vdx.2	+	6	830	c.655G>T	c.(655-657)GGG>TGG	p.G219W		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	219	cAMP 1.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						TGATAATCGTGGGAGTTTCGG	0.423													50	87					8.72198e-27	1.07347e-26	0.014410	1	0	
SLC35B4	84912	broad.mit.edu	37	7	133994182	133994182	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:133994182T>A	uc003vrn.2	-	2	451	c.127A>T	c.(127-129)ATT>TTT	p.I43F	SLC35B4_uc010lmk.2_5'UTR|SLC35B4_uc010lml.1_5'UTR|SLC35B4_uc003vro.3_Missense_Mutation_p.I43F	NM_032826	NP_116215	Q969S0	S35B4_HUMAN	solute carrier family 35, member B4	43	Helical; (Potential).					Golgi membrane|integral to membrane	UDP-N-acetylglucosamine transmembrane transporter activity|UDP-xylose transmembrane transporter activity			skin(1)	1						TCCACAGCAATAAATAAAAAT	0.398													7	61					0	0	0.004482	0	0	
DGKI	9162	broad.mit.edu	37	7	137257570	137257570	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr7:137257570A>G	uc003vtt.2	-	18	1777	c.1776T>C	c.(1774-1776)GAT>GAC	p.D592D	DGKI_uc003vtu.2_Silent_p.D292D	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	592					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						TTGGGGTGAGATCTGTTCCAT	0.363													5	139					0	0	0.001168	0	0	
DLC1	10395	broad.mit.edu	37	8	12957933	12957933	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:12957933C>T	uc003wwm.2	-	9	2357	c.1913G>A	c.(1912-1914)GGC>GAC	p.G638D	DLC1_uc003wwk.1_Missense_Mutation_p.G201D|DLC1_uc003wwl.1_Missense_Mutation_p.G235D|DLC1_uc011kxx.1_Missense_Mutation_p.G127D	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	638					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GGGCAGGCTGCCGAAAGAGTC	0.592													39	130					0	0	0.013114	0	0	
DLC1	10395	broad.mit.edu	37	8	12958076	12958076	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:12958076C>A	uc003wwm.2	-	9	2214	c.1770G>T	c.(1768-1770)GAG>GAT	p.E590D	DLC1_uc003wwk.1_Missense_Mutation_p.E153D|DLC1_uc003wwl.1_Missense_Mutation_p.E187D|DLC1_uc011kxx.1_Missense_Mutation_p.E79D	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	590					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						CGGAAGACACCTCCTGGCGCT	0.692													15	70					5.35356e-11	6.32543e-11	0.002780	1	0	
NRG1	3084	broad.mit.edu	37	8	32621751	32621751	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:32621751A>G	uc003xiv.2	+	12	2271	c.1754A>G	c.(1753-1755)GAT>GGT	p.D585G	NRG1_uc010lvo.2_3'UTR|NRG1_uc003xiu.2_Missense_Mutation_p.D590G|NRG1_uc003xiw.2_Missense_Mutation_p.D582G|NRG1_uc003xit.2_3'UTR|NRG1_uc010lvr.2_Missense_Mutation_p.D327G|NRG1_uc010lvs.2_Missense_Mutation_p.D327G|NRG1_uc010lvp.2_Missense_Mutation_p.D539G|NRG1_uc010lvq.2_Missense_Mutation_p.D522G|NRG1_uc011lbg.1_3'UTR|NRG1_uc011lbh.1_Missense_Mutation_p.D428G|NRG1_uc003xja.2_Missense_Mutation_p.D396G	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	585	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		GTAGGTGAAGATACGCCTTTC	0.542													7	73					0	0	0.001984	0	0	
PRDM14	63978	broad.mit.edu	37	8	70981815	70981815	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:70981815C>T	uc003xym.2	-	2	483	c.281G>A	c.(280-282)TGG>TAG	p.W94*		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	94					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			CTTGCTGTACCAGGGCAGATC	0.667													5	15					0	0	0.000602	0	0	
RUNX1T1	862	broad.mit.edu	37	8	93004118	93004118	+	Splice_Site	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:93004118C>T	uc003yfd.2	-	6	825	c.741_splice	c.e6-1	p.R247_splice	RUNX1T1_uc003yfc.1_Splice_Site_p.R220_splice|RUNX1T1_uc003yfe.1_Splice_Site_p.R210_splice|RUNX1T1_uc010mao.2_Splice_Site_p.R220_splice|RUNX1T1_uc011lgi.1_Splice_Site_p.R258_splice|RUNX1T1_uc010man.1_Splice_Site|RUNX1T1_uc003yfb.1_Splice_Site_p.R210_splice	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1						generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TTCTTTGGTTCTAAAGGGGGA	0.403													30	68					0	0	0.009535	0	0	
RUNX1T1	862	broad.mit.edu	37	8	93023265	93023265	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:93023265A>C	uc003yfd.2	-	4	607	c.523T>G	c.(523-525)TTC>GTC	p.F175V	RUNX1T1_uc003yfc.1_Missense_Mutation_p.F148V|RUNX1T1_uc003yfe.1_Missense_Mutation_p.F138V|RUNX1T1_uc010mao.2_Missense_Mutation_p.F148V|RUNX1T1_uc011lgi.1_Missense_Mutation_p.F186V|RUNX1T1_uc003yfh.1_Missense_Mutation_p.F138V|RUNX1T1_uc003yfb.1_Missense_Mutation_p.F138V|RUNX1T1_uc003yff.1_Missense_Mutation_p.F138V|RUNX1T1_uc003yfg.1_Missense_Mutation_p.F138V	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	175	TAFH.			F->A: Abolishes interaction with corepressor.	generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			CTCAGTGGGAAGTTAGTAGCT	0.348													37	109					0	0	0.007835	0	0	
POP1	10940	broad.mit.edu	37	8	99139913	99139913	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:99139913A>G	uc003yij.3	+	3	333	c.233A>G	c.(232-234)AAA>AGA	p.K78R	POP1_uc011lgv.1_Missense_Mutation_p.K78R|POP1_uc003yik.2_Missense_Mutation_p.K78R	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	78					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			TCTTCCTCCAAAGGGATGTTT	0.498													53	263					0	0	0.014410	0	0	
YWHAZ	7534	broad.mit.edu	37	8	101932970	101932970	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:101932970G>A	uc011lhe.1	-	6	866	c.689C>T	c.(688-690)TCG>TTG	p.S230L	YWHAZ_uc003yjv.2_Missense_Mutation_p.S230L|YWHAZ_uc011lhf.1_Missense_Mutation_p.S230L|YWHAZ_uc003yjw.2_Missense_Mutation_p.S230L|YWHAZ_uc010mbq.2_Missense_Mutation_p.S153L|YWHAZ_uc011lhg.1_Missense_Mutation_p.S110L|YWHAZ_uc010mbr.2_Missense_Mutation_p.S230L|YWHAZ_uc003yjx.2_Missense_Mutation_p.S230L	NM_001135702	NP_001129174	P63104	1433Z_HUMAN	tyrosine 3/tryptophan 5 -monooxygenase	230					anti-apoptosis|mRNA metabolic process|platelet activation|signal transduction	cytosol|melanosome	transcription factor binding				0	all_cancers(14;7.43e-06)|all_epithelial(15;2.77e-08)|Lung NSC(17;6.08e-05)|all_lung(17;0.000197)		Epithelial(11;2.79e-11)|all cancers(13;5.45e-09)|OV - Ovarian serous cystadenocarcinoma(57;4.75e-05)		Ginkgo biloba(DB01381)	TTGGGTATCCGATGTCCACAA	0.458													42	156					0	0	0.014410	0	0	
PKHD1L1	93035	broad.mit.edu	37	8	110424511	110424511	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:110424511G>A	uc003yne.2	+	20	2207	c.2103G>A	c.(2101-2103)GGG>GGA	p.G701G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	701	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTAACAGAGGGCAGAAGACAG	0.413										HNSCC(38;0.096)			10	129					0	0	0.002450	0	0	
PKHD1L1	93035	broad.mit.edu	37	8	110527434	110527434	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:110527434A>C	uc003yne.2	+	72	11693	c.11589A>C	c.(11587-11589)CAA>CAC	p.Q3863H		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3863	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CCACACTTCAACGTTTGGATG	0.318										HNSCC(38;0.096)			4	27					0	0	0.009096	0	0	
CSMD3	114788	broad.mit.edu	37	8	113529404	113529404	+	Silent	SNP	G	T	T	rs149308903		TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:113529404G>T	uc003ynu.2	-	28	4774	c.4615C>A	c.(4615-4617)CGA>AGA	p.R1539R	CSMD3_uc003yns.2_Silent_p.R811R|CSMD3_uc003ynt.2_Silent_p.R1499R|CSMD3_uc011lhx.1_Silent_p.R1435R	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1539	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCCCCATTTCGAGTCCCATTC	0.438										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			16	116					9.16793e-09	1.06039e-08	0.004990	1	0	
TRPS1	7227	broad.mit.edu	37	8	116617098	116617098	+	Silent	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:116617098A>G	uc003ynz.2	-	3	1518	c.1059T>C	c.(1057-1059)CAT>CAC	p.H353H	TRPS1_uc011lhy.1_Silent_p.H357H|TRPS1_uc003yny.2_Silent_p.H366H|TRPS1_uc010mcy.2_Silent_p.H353H	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	353	C2H2-type 2; atypical.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			TCTGAAGAAAATGTTGTTCTA	0.423									Langer-Giedion_syndrome				5	236					0	0	0.001984	0	0	
TMEM65	157378	broad.mit.edu	37	8	125334366	125334366	+	Silent	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:125334366C>A	uc010mdl.2	-	5	1037	c.495G>T	c.(493-495)GTG>GTT	p.V165V		NM_194291	NP_919267	Q6PI78	TMM65_HUMAN	transmembrane protein 65	165	Helical; (Potential).					integral to membrane					0	Lung NSC(37;1.18e-11)|Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			CTAGATCTGACACAAGATTTC	0.294													19	168					1.40151e-16	1.68708e-16	0.010504	1	0	
ADCY8	114	broad.mit.edu	37	8	131916177	131916177	+	Silent	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:131916177A>C	uc003ytd.3	-	7	2008	c.1752T>G	c.(1750-1752)ACT>ACG	p.T584T	ADCY8_uc010mds.2_Silent_p.T584T	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	584	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TAATTAAGTAAGTTTCGATAT	0.483										HNSCC(32;0.087)			7	394					0	0	0.003080	0	0	
EFR3A	23167	broad.mit.edu	37	8	132962265	132962265	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:132962265G>T	uc003yte.2	+	5	617	c.416G>T	c.(415-417)CGT>CTT	p.R139L		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	139						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			TATCACAGACGTTATGACTTT	0.328													7	45					1.26484e-09	1.47629e-09	0.003080	1	0	
PLEC	5339	broad.mit.edu	37	8	144993129	144993129	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:144993129G>C	uc003zaf.1	-	32	11441	c.11271C>G	c.(11269-11271)ATC>ATG	p.I3757M	PLEC_uc003zab.1_Missense_Mutation_p.I3620M|PLEC_uc003zac.1_Missense_Mutation_p.I3624M|PLEC_uc003zad.2_Missense_Mutation_p.I3620M|PLEC_uc003zae.1_Missense_Mutation_p.I3588M|PLEC_uc003zag.1_Missense_Mutation_p.I3598M|PLEC_uc003zah.2_Missense_Mutation_p.I3606M|PLEC_uc003zaj.2_Missense_Mutation_p.I3647M	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3757	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CGATGATGATGATGATCATGC	0.617													23	232					0	0	0.006320	0	0	
PLEC	5339	broad.mit.edu	37	8	144993332	144993332	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr8:144993332C>G	uc003zaf.1	-	32	11238	c.11068G>C	c.(11068-11070)GAG>CAG	p.E3690Q	PLEC_uc003zab.1_Missense_Mutation_p.E3553Q|PLEC_uc003zac.1_Missense_Mutation_p.E3557Q|PLEC_uc003zad.2_Missense_Mutation_p.E3553Q|PLEC_uc003zae.1_Missense_Mutation_p.E3521Q|PLEC_uc003zag.1_Missense_Mutation_p.E3531Q|PLEC_uc003zah.2_Missense_Mutation_p.E3539Q|PLEC_uc003zaj.2_Missense_Mutation_p.E3580Q	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3690	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TGCGTGGTCTCCACCACCTCA	0.632													24	481					0	0	0.007291	0	0	
KCNV2	169522	broad.mit.edu	37	9	2718317	2718317	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:2718317A>G	uc003zho.1	+	1	792	c.578A>G	c.(577-579)AAG>AGG	p.K193R		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	193	Extracellular (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		GTGCGGCTCAAGTACACGCCA	0.672													9	20					0	0	0.008291	0	0	
MPDZ	8777	broad.mit.edu	37	9	13217225	13217225	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:13217225T>G	uc010mia.1	-	8	1212	c.1155A>C	c.(1153-1155)CAA>CAC	p.Q385H	MPDZ_uc010mhy.2_Missense_Mutation_p.Q385H|MPDZ_uc010mhz.2_Missense_Mutation_p.Q385H|MPDZ_uc011lmn.1_Missense_Mutation_p.Q385H|MPDZ_uc003zlb.3_Missense_Mutation_p.Q385H	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	385	PDZ 3.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		TTCCTAATCCTTGGACATTTT	0.294													4	12					0	0	0.009096	0	0	
HEMGN	55363	broad.mit.edu	37	9	100692752	100692752	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:100692752C>A	uc004axy.2	-	3	1033	c.925G>T	c.(925-927)GAC>TAC	p.D309Y	HEMGN_uc004axz.2_Missense_Mutation_p.D309Y	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	309					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GTAGAAAGGTCTTTAGGCTCA	0.383													10	416					1.58986e-06	1.80091e-06	0.008291	1	0	
OR13C2	392376	broad.mit.edu	37	9	107367876	107367876	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:107367876T>A	uc011lvq.1	-	1	33	c.33A>T	c.(31-33)GAA>GAT	p.E11D		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCAGAAAAAATTCCACCAGAA	0.373													19	110					0	0	0.005443	0	0	
PTGR1	22949	broad.mit.edu	37	9	114325440	114325440	+	Silent	SNP	C	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:114325440C>G	uc004bfh.2	-	10	1054	c.951G>C	c.(949-951)CTG>CTC	p.L317L	ZNF483_uc004bfg.2_Intron|PTGR1_uc011lwr.1_Intron|PTGR1_uc004bfi.3_Silent_p.L317L|PTGR1_uc004bfj.3_3'UTR	NM_012212	NP_036344	Q14914	PTGR1_HUMAN	prostaglandin reductase 1 isoform 1	317					leukotriene metabolic process	cytoplasm	15-oxoprostaglandin 13-oxidase activity|2-alkenal reductase activity|alcohol dehydrogenase (NAD) activity|zinc ion binding				0						TATCTCCTTTCAGCATTCCCA	0.343													26	81					0	0	0.007291	0	0	
COL27A1	85301	broad.mit.edu	37	9	116930585	116930585	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:116930585C>A	uc011lxl.1	+	3	750	c.750C>A	c.(748-750)TTC>TTA	p.F250L	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.F100L	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	250					cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GACCTCTCTTCTCCCAAGACT	0.587													15	116					1.3612e-06	1.55104e-06	0.003163	1	0	
HSPA5	3309	broad.mit.edu	37	9	127999057	127999057	+	Silent	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:127999057G>C	uc004bpn.2	-	8	2035	c.1779C>G	c.(1777-1779)ACC>ACG	p.T593T		NM_005347	NP_005338	P11021	GRP78_HUMAN	heat shock 70kDa protein 5	593					anti-apoptosis|cellular response to glucose starvation|ER-associated protein catabolic process|platelet activation|platelet degranulation|regulation of protein folding in endoplasmic reticulum	cell surface|endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|integral to endoplasmic reticulum membrane|melanosome|midbody|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|calcium ion binding|caspase inhibitor activity|chaperone binding|misfolded protein binding|protein binding, bridging|protein domain specific binding|ubiquitin protein ligase binding|unfolded protein binding			ovary(3)|skin(1)	4					Antihemophilic Factor(DB00025)	CTTTTTCCATGGTCTCCTTAT	0.383										Prostate(1;0.17)			42	252					0	0	0.011902	0	0	
C9orf119	375757	broad.mit.edu	37	9	131038446	131038446	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:131038446G>A	uc004bup.2	+	1	22	c.22G>A	c.(22-24)GAC>AAC	p.D8N	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.D8N	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	8					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						TGGCCAGAGGGACCTGTGGCG	0.642													22	153					0	0	0.002780	0	0	
TTF1	7270	broad.mit.edu	37	9	135278082	135278082	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:135278082C>A	uc004cbl.2	-	2	179	c.127G>T	c.(127-129)GTG>TTG	p.V43L	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Intron	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	43	N-terminal region (NRD) (By similarity).				negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		TGTTCATTCACCAGGGAGGAG	0.373													27	129					1.7881e-09	2.0807e-09	0.008361	1	0	
EHMT1	79813	broad.mit.edu	37	9	140711934	140711934	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr9:140711934G>A	uc011mfc.1	+	24	3455	c.3418G>A	c.(3418-3420)GTG>ATG	p.V1140M	EHMT1_uc004coe.2_Missense_Mutation_p.V45M	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	1140	SET.				DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		GGGCTGGGGCGTGCGGTCCCT	0.612													28	94					0	0	0.003271	0	0	
WWC3	55841	broad.mit.edu	37	X	10046905	10046905	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:10046905G>A	uc004csx.3	+	4	485	c.287G>A	c.(286-288)CGT>CAT	p.R96H	WWC3_uc010nds.2_5'UTR|WWC3_uc010ndt.2_5'Flank	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	96	Potential.									ovary(4)	4						ATAGCAAGTCGTCGGGATAGG	0.413													134	93					0	0	0.014410	0	0	
FANCB	2187	broad.mit.edu	37	X	14862735	14862735	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:14862735G>C	uc004cwg.1	-	9	2323	c.2055C>G	c.(2053-2055)ATC>ATG	p.I685M	FANCB_uc004cwh.1_Missense_Mutation_p.I685M	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	685					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					GAAATTCTTTGATTATTTCAC	0.378								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				71	43					0	0	0.014410	0	0	
DMD	1756	broad.mit.edu	37	X	32429933	32429933	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:32429933T>A	uc004dda.1	-	30	4413	c.4169A>T	c.(4168-4170)GAC>GTC	p.D1390V	DMD_uc004dcw.2_Missense_Mutation_p.D46V|DMD_uc004dcx.2_Missense_Mutation_p.D49V|DMD_uc004dcz.2_Missense_Mutation_p.D1267V|DMD_uc004dcy.1_Missense_Mutation_p.D1386V|DMD_uc004ddb.1_Missense_Mutation_p.D1382V|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1390					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				CAACTGCTTGTCAATGAATGT	0.473													20	22					0	0	0.012319	0	0	
ZNF630	57232	broad.mit.edu	37	X	47919190	47919190	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:47919190T>G	uc004div.3	-	5	893	c.641A>C	c.(640-642)AAG>ACG	p.K214T	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Missense_Mutation_p.K90T	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	214					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						AGCATTATACTTAGGTGGTCT	0.393													6	135					0	0	0.001984	0	0	
HUWE1	10075	broad.mit.edu	37	X	53655775	53655775	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:53655775C>T	uc004dsp.2	-	14	1444	c.1042G>A	c.(1042-1044)GAC>AAC	p.D348N		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	348					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						CCAGTACAGTCAATAATACTG	0.393													32	52					0	0	0.009535	0	0	
TRMT2B	79979	broad.mit.edu	37	X	100278521	100278521	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:100278521G>A	uc004egq.2	-	7	993	c.694C>T	c.(694-696)CGC>TGC	p.R232C	TRMT2B_uc004egp.2_RNA|TRMT2B_uc004egr.2_Missense_Mutation_p.R232C|TRMT2B_uc004egs.2_Missense_Mutation_p.R232C|TRMT2B_uc004egt.2_Missense_Mutation_p.R232C|TRMT2B_uc004egu.2_Missense_Mutation_p.R113C|TRMT2B_uc004egv.2_Missense_Mutation_p.R187C	NM_024917	NP_079193	Q96GJ1	TRM2_HUMAN	TRM2 tRNA methyltransferase 2 homolog B	232							tRNA (uracil-5-)-methyltransferase activity			ovary(1)	1						CTATTGGTGCGGACTGTGAGC	0.463													63	123					0	0	0.014410	0	0	
NRK	203447	broad.mit.edu	37	X	105142676	105142676	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:105142676A>G	uc004emd.2	+	8	983	c.680A>G	c.(679-681)GAT>GGT	p.D227G	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	227	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						ATTGACTGTGATGAGGACCCA	0.408										HNSCC(51;0.14)			10	15					0	0	0.008291	0	0	
NRK	203447	broad.mit.edu	37	X	105193615	105193615	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:105193615T>A	uc004emd.2	+	27	4705	c.4402T>A	c.(4402-4404)TTG>ATG	p.L1468M	NRK_uc011msi.1_Missense_Mutation_p.L49M	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1468	CNH.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						ACCTGATTGCTTGGGAATTGG	0.373										HNSCC(51;0.14)			23	60					0	0	0.004656	0	0	
RGAG1	57529	broad.mit.edu	37	X	109696362	109696362	+	Silent	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:109696362T>G	uc004eor.1	+	3	2763	c.2517T>G	c.(2515-2517)GCT>GCG	p.A839A	RGAG1_uc011msr.1_Silent_p.A839A	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	839										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						AAGTGAAGGCTCCCATCTCTG	0.537													12	249					0	0	0.001855	0	0	
RGAG1	57529	broad.mit.edu	37	X	109697340	109697340	+	Silent	SNP	G	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:109697340G>A	uc004eor.1	+	3	3741	c.3495G>A	c.(3493-3495)GAG>GAA	p.E1165E	RGAG1_uc011msr.1_Silent_p.E1165E	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	1165										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GCTCTGTGGAGGAAGAGATGG	0.507													41	84					0	0	0.006230	0	0	
PAK3	5063	broad.mit.edu	37	X	110435361	110435361	+	Silent	SNP	A	C	C			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:110435361A>C	uc004epa.2	+	9	909	c.882A>C	c.(880-882)TCA>TCC	p.S294S	PAK3_uc010npt.1_Silent_p.S279S|PAK3_uc010npu.1_Silent_p.S279S|PAK3_uc004eoy.1_Silent_p.S34S|PAK3_uc004eoz.2_Silent_p.S279S|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Silent_p.S315S|PAK3_uc010npw.1_Silent_p.S300S	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	294	ATP (By similarity).|Protein kinase.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						ACAGGGCATCAGGTACTGTTT	0.308										TSP Lung(19;0.15)			94	72					0	0	0.014410	0	0	
GPR112	139378	broad.mit.edu	37	X	135430266	135430266	+	Silent	SNP	T	G	G			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:135430266T>G	uc004ezu.1	+	6	4692	c.4401T>G	c.(4399-4401)TCT>TCG	p.S1467S	GPR112_uc010nsb.1_Silent_p.S1262S|GPR112_uc010nsc.1_Silent_p.S1234S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1467	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGTCCTTGTCTCTTTCCACAG	0.433													6	133					0	0	0.001984	0	0	
SPRY3	10251	broad.mit.edu	37	X	155004392	155004392	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chrX:155004392T>A	uc004fnq.1	+	2	1313	c.859T>A	c.(859-861)TCT>ACT	p.S287T	SPRY3_uc010nvl.1_Missense_Mutation_p.S188T	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	287					multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CCAGGAAAAGTCTGTATGACC	0.542													50	90					0	0	0.014410	0	0	
ZNF284	342909	broad.mit.edu	37	19	44590983	44590984	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-BR-4357-01A-01D-1158-08	TCGA-BR-4357-11A-01D-1158-08									Somatic	Phase_I	Capture				Illumina GAIIx	bec6b643-3173-415d-8d12-b585c869018c	ec09774d-f21b-4b96-b757-f534d4e4375c	g.chr19:44590983_44590984delGA	uc002oyg.1	+	5	1568_1569	c.1352_1353delGA	c.(1351-1353)GGAfs	p.G451fs	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	451					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				GTCCACACGGGAGAGAGACCTT	0.421													72	121	---	---	---	---						.
