Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
C1orf144	26099	broad.mit.edu	37	1	16719932	16719932	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:16719932G>C	uc001aym.3	+	3	481	c.311G>C	c.(310-312)GGC>GCC	p.G104A	C1orf144_uc010ocb.1_Missense_Mutation_p.G84A|C1orf144_uc001ayi.3_Missense_Mutation_p.G85A|C1orf144_uc001ayk.3_Missense_Mutation_p.G84A	NM_001114600	NP_001108072	Q7Z422	CA144_HUMAN	putative MAPK activating protein PM20,PM21	104											0		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(227;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;4.12e-05)|Kidney(64;0.00018)|KIRC - Kidney renal clear cell carcinoma(64;0.00267)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0649)		CGGATCCTGGGCAGCGCCAGC	0.677000													4	23					0	0	0.000602	0	0	
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													5	47					0	0	0.001168	0	0	
CSMD2	114784	broad.mit.edu	37	1	34238265	34238265	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:34238265T>G	uc001bxn.1	-	13	1660	c.1631A>C	c.(1630-1632)AAG>ACG	p.K544T	CSMD2_uc001bxm.1_Missense_Mutation_p.K584T	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	544	Sushi 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCACTCAAACTTGAGTGTGTC	0.557000													23	79					0	0	0.012319	0	0	
GJA9	81025	broad.mit.edu	37	1	39341098	39341098	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:39341098A>C	uc001cct.1	-	2	954	c.673T>G	c.(673-675)TTA>GTA	p.L225V	RRAGC_uc001ccr.2_5'Flank|MYCBP_uc001ccs.2_5'Flank	NM_030772	NP_110399	P57773	CXA9_HUMAN	gap junction protein, alpha 9, 59kDa	225	Helical; (Potential).				cell communication	connexon complex|integral to membrane					0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			AGAATGTTTAAGAAAAGTGAA	0.328000													9	94					0	0	0.006214	0	0	
RLF	6018	broad.mit.edu	37	1	40704945	40704945	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:40704945A>C	uc001cfc.3	+	8	4602	c.4571A>C	c.(4570-4572)AAG>ACG	p.K1524T	RLF_uc001cfd.3_Missense_Mutation_p.K1215T	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	1524					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			ATCAAAGAAAAGAAAGCCCCA	0.433000													27	248					0	0	0.006320	0	0	
RLF	6018	broad.mit.edu	37	1	40705056	40705056	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:40705056A>C	uc001cfc.3	+	8	4713	c.4682A>C	c.(4681-4683)AAG>ACG	p.K1561T	RLF_uc001cfd.3_Missense_Mutation_p.K1252T	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	1561	C2H2-type 14.				chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			TCTGTGGTGAAGTTGGAGAGC	0.453000													24	236					0	0	0.002780	0	0	
PGM1	5236	broad.mit.edu	37	1	64097413	64097413	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:64097413G>A	uc001dbh.2	+	4	855	c.642G>A	c.(640-642)GGG>GGA	p.G214G	PGM1_uc010ooy.1_Silent_p.G17G|PGM1_uc010ooz.1_Silent_p.G232G	NM_002633	NP_002624	P36871	PGM1_HUMAN	phosphoglucomutase 1	214					cellular calcium ion homeostasis|galactose catabolic process|glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity			ovary(2)|kidney(1)	3						TACTTTCTGGGCCAAACCGAC	0.418000													4	147					0	0	0.000602	0	0	
COL24A1	255631	broad.mit.edu	37	1	86590762	86590762	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:86590762G>A	uc001dlj.2	-	3	1299	c.1257C>T	c.(1255-1257)AAC>AAT	p.N419N	COL24A1_uc010osd.1_Translation_Start_Site|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Silent_p.N419N	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	419					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		CCATGAGTTCGTTAGTGTGTA	0.363000													13	55					0	0	0.001855	0	0	
GBP4	115361	broad.mit.edu	37	1	89657186	89657186	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:89657186T>C	uc001dnb.2	-	6	790	c.674A>G	c.(673-675)AAG>AGG	p.K225R		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	225						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		TTTGGGATTCTTGCCTGTGGA	0.473000													10	40					0	0	0.013537	0	0	
CCDC18	343099	broad.mit.edu	37	1	93705450	93705450	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:93705450T>G	uc001dpq.2	+	21	3500	c.3332T>G	c.(3331-3333)CTT>CGT	p.L1111R	CCDC18_uc009wdl.1_Missense_Mutation_p.L628R	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	992	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		ACAGCTGAACTTAGGTGAGTT	0.313000													11	38					0	0	0.008291	0	0	
SPAG17	200162	broad.mit.edu	37	1	118558604	118558604	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:118558604T>C	uc001ehk.2	-	29	4339	c.4271A>G	c.(4270-4272)GAT>GGT	p.D1424G		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1424						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		ATTGACAGGATCTGTGGCCTG	0.343000													6	236					0	0	0.001168	0	0	
NBPF7	343505	broad.mit.edu	37	1	120378693	120378693	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:120378693T>G	uc010oxk.1	-	7	1674	c.1053A>C	c.(1051-1053)AAA>AAC	p.K351N		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	351	NBPF 2.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		CAGAGCAAACTTTCTGTTCAA	0.488000													19	197					0	0	0.008871	0	0	
PDE4DIP	9659	broad.mit.edu	37	1	144866714	144866714	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:144866714A>C	uc001elw.3	-	34	5819	c.5528T>G	c.(5527-5529)CTG>CGG	p.L1843R	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.L1737R|PDE4DIP_uc001elv.3_Missense_Mutation_p.L850R|PDE4DIP_uc001ema.2_Missense_Mutation_p.L30R	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1843	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTCTTCCAGCAGGTCAGCCCC	0.607000			T	PDGFRB	MPD								7	185					0	0	0.003080	0	0	
LINGO4	339398	broad.mit.edu	37	1	151774162	151774162	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:151774162T>C	uc001ezf.1	-	2	1209	c.1019A>G	c.(1018-1020)GAG>GGG	p.E340G		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	340	Extracellular (Potential).|LRR 11.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			AGCTGTTTCCTCTAGTGTCTG	0.592000													4	108					0	0	0.009096	0	0	
NES	10763	broad.mit.edu	37	1	156640713	156640713	+	Silent	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:156640713G>C	uc001fpq.2	-	4	3400	c.3267C>G	c.(3265-3267)GCC>GCG	p.A1089A		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1089	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					ACTCACCCATGGCAGGCTCTG	0.677000													7	39					0	0	0.004482	0	0	
MNDA	4332	broad.mit.edu	37	1	158815416	158815416	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:158815416A>C	uc001fsz.1	+	5	810	c.610A>C	c.(610-612)AGA>CGA	p.R204R		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	204	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					GGATGCAAGAAGAAATGTTCC	0.423000													4	56					0	0	0.000602	0	0	
FCRL6	343413	broad.mit.edu	37	1	159778997	159778997	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:159778997T>G	uc001fud.3	+	4	608	c.566T>G	c.(565-567)GTC>GGC	p.V189G	FCRL6_uc010pix.1_3'UTR|FCRL6_uc001fuc.2_Missense_Mutation_p.V196G|FCRL6_uc009wsz.1_Intron|FCRL6_uc009wta.2_Missense_Mutation_p.V189G	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	189	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GGTGGCCAGGTCCAGAAGCAG	0.657000													19	116					0	0	0.007413	0	0	
ZNF648	127665	broad.mit.edu	37	1	182025473	182025473	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:182025473T>C	uc001goz.2	-	2	1881	c.1673A>G	c.(1672-1674)AAG>AGG	p.K558R		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	558					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGGCTCCTTCTTGCAGGTGCC	0.587000													13	57					0	0	0.001855	0	0	
CRB1	23418	broad.mit.edu	37	1	197404424	197404424	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:197404424A>C	uc001gtz.2	+	9	3566	c.3431A>C	c.(3430-3432)AAC>ACC	p.N1144T	CRB1_uc010poz.1_Missense_Mutation_p.N1120T|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.N1032T|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.N625T|CRB1_uc001gub.1_Missense_Mutation_p.N793T	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1144	Extracellular (Potential).|EGF-like 15.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AATGTCTGCAACTCCAACCCC	0.423000													15	54					0	0	0.002450	0	0	
PPFIA4	8497	broad.mit.edu	37	1	203045504	203045504	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:203045504G>A	uc001gyz.2	+	17	2685	c.2092G>A	c.(2092-2094)GCC>ACC	p.A698T	PPFIA4_uc009xaj.2_Missense_Mutation_p.A1329T|PPFIA4_uc010pqf.1_Missense_Mutation_p.A911T|PPFIA4_uc001gza.2_Missense_Mutation_p.A689T|PPFIA4_uc001gzb.1_3'UTR|PPFIA4_uc001gzc.1_3'UTR	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	698					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						CATGCTCTCCGCCTTCCGGGA	0.617000													22	100					0	0	0.002780	0	0	
IL19	29949	broad.mit.edu	37	1	206972263	206972263	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:206972263G>A	uc001heo.2	+	1	49	c.24G>A	c.(22-24)CCG>CCA	p.P8P		NM_153758	NP_715639	Q9UHD0	IL19_HUMAN	interleukin 19 isoform 1 precursor	Error:Variant_position_missing_in_Q9UHD0_after_alignment					apoptosis|immune response|signal transduction	extracellular space	cytokine activity			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(75;0.211)			GAGCGTTTCCGCACAGATCTG	0.483000													15	87					0	0	0.002450	0	0	
G0S2	50486	broad.mit.edu	37	1	209849270	209849270	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:209849270C>A	uc001hhi.3	+	2	498	c.241C>A	c.(241-243)CAG>AAG	p.Q81K		NM_015714	NP_056529	P27469	G0S2_HUMAN	G0/G1switch 2	81					cell cycle						0				OV - Ovarian serous cystadenocarcinoma(81;0.041)		GCAAGCCCTGCAGGAGAAAGG	0.701000													8	30					0.000157383	0.000159653	0.003080	1	0	
TGFB2	7042	broad.mit.edu	37	1	218607431	218607431	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:218607431A>C	uc001hlm.2	+	3	1171	c.518A>C	c.(517-519)AAG>ACG	p.K173T	TGFB2_uc001hln.2_Missense_Mutation_p.K201T|TGFB2_uc010pue.1_RNA|TGFB2_uc001hlo.2_RNA	NM_003238	NP_003229	P61812	TGFB2_HUMAN	transforming growth factor, beta 2 isoform 2	173					activation of protein kinase activity|angiogenesis|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cardioblast differentiation|catagen|cell cycle arrest|cell death|cell growth|cell-cell junction organization|cell-cell signaling|collagen fibril organization|dopamine biosynthetic process|embryonic digestive tract development|eye development|glial cell migration|hair follicle morphogenesis|hemopoiesis|menstrual cycle phase|negative regulation of alkaline phosphatase activity|negative regulation of cell growth|negative regulation of epithelial cell proliferation|negative regulation of immune response|negative regulation of macrophage cytokine production|neuron development|neutrophil chemotaxis|odontogenesis|pathway-restricted SMAD protein phosphorylation|platelet activation|platelet degranulation|positive regulation of cardioblast differentiation|positive regulation of catagen|positive regulation of cell adhesion mediated by integrin|positive regulation of cell cycle|positive regulation of cell division|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of epithelial cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of heart contraction|positive regulation of immune response|positive regulation of integrin biosynthetic process|positive regulation of neuron apoptosis|positive regulation of ossification|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein secretion|positive regulation of stress-activated MAPK cascade|regulation of transforming growth factor-beta2 production|response to hypoxia|response to progesterone stimulus|salivary gland morphogenesis|SMAD protein import into nucleus|somatic stem cell division|transforming growth factor beta receptor signaling pathway	axon|extracellular matrix|extracellular space|neuronal cell body|platelet alpha granule lumen	beta-amyloid binding|cytokine activity|growth factor activity|protein heterodimerization activity|protein homodimerization activity|receptor signaling protein serine/threonine kinase activity|type II transforming growth factor beta receptor binding				0				all cancers(67;0.0459)|OV - Ovarian serous cystadenocarcinoma(81;0.049)|GBM - Glioblastoma multiforme(131;0.0776)		CAGATTCTCAAGTCCAAAGAT	0.423000													123	276					0	0	0.014410	0	0	
MIA3	375056	broad.mit.edu	37	1	222794619	222794619	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:222794619A>T	uc001hnl.2	+	2	261	c.252A>T	c.(250-252)GAA>GAT	p.E84D		NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	84	SH3.|Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		GATGGCCTGAAGTTTGGGCTG	0.363000													32	70					0	0	0.003755	0	0	
OBSCN	84033	broad.mit.edu	37	1	228462138	228462138	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:228462138C>T	uc009xez.1	+	19	5720	c.5676C>T	c.(5674-5676)ACC>ACT	p.T1892T	OBSCN_uc001hsn.2_Silent_p.T1892T	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1892	Ig-like 18.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CGCAGCTCACCGTCAGTGGTA	0.637000													22	22					0	0	0.002780	0	0	
KIAA1804	84451	broad.mit.edu	37	1	233512225	233512225	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:233512225A>C	uc001hvt.3	+	8	2137	c.1876A>C	c.(1876-1878)AAA>CAA	p.K626Q	KIAA1804_uc001hvu.3_Missense_Mutation_p.K72Q	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	626					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				TATCTTAATAAAAAATCAGAA	0.413000													10	80					0	0	0.010729	0	0	
TFB2M	64216	broad.mit.edu	37	1	246707908	246707908	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:246707908A>T	uc001ibn.2	-	7	1059	c.934T>A	c.(934-936)TTA>ATA	p.L312I		NM_022366	NP_071761	Q9H5Q4	TFB2M_HUMAN	transcription factor B2, mitochondrial	312					positive regulation of transcription, DNA-dependent|transcription initiation from mitochondrial promoter	mitochondrial nucleoid	protein binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity|transcription cofactor activity			ovary(1)	1	all_cancers(71;4.25e-05)|all_epithelial(71;4.92e-06)|Ovarian(71;0.0254)|all_lung(81;0.0272)|Breast(184;0.0318)|Lung NSC(105;0.0376)		OV - Ovarian serous cystadenocarcinoma(106;0.00358)			ATAGGTGTTAAGTTCTTGGTA	0.333000													18	68					0	0	0.006122	0	0	
OR2B11	127623	broad.mit.edu	37	1	247614782	247614782	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:247614782A>T	uc010pyx.1	-	1	503	c.503T>A	c.(502-504)GTG>GAG	p.V168E		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	168	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TGGCAATTGCACCGTCAGGAC	0.592000													4	38					0	0	0.009096	0	0	
OR2T6	254879	broad.mit.edu	37	1	248551780	248551780	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:248551780A>G	uc001iei.1	+	1	871	c.871A>G	c.(871-873)AGT>GGT	p.S291G		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	291	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCTCATCTACAGTCTGAGGAA	0.448000													47	65					0	0	0.014410	0	0	
ITIH5	80760	broad.mit.edu	37	10	7658034	7658034	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:7658034A>C	uc001ijq.2	-	7	929	c.850T>G	c.(850-852)TTT>GTT	p.F284V	ITIH5_uc001ijp.2_Missense_Mutation_p.F70V|ITIH5_uc001ijr.1_Missense_Mutation_p.F284V	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	284					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						TTAGGAGCAAAGTAGTGCACA	0.468000													12	67					0	0	0.010729	0	0	
APBB1IP	54518	broad.mit.edu	37	10	26789970	26789970	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:26789970T>A	uc001iss.2	+	5	704	c.383T>A	c.(382-384)TTA>TAA	p.L128*	APBB1IP_uc001isr.2_Nonsense_Mutation_p.L128*|APBB1IP_uc009xks.1_Nonsense_Mutation_p.L128*	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	128					blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						GAGGATGACTTACCACCTCCA	0.502000													14	98					0	0	0.001855	0	0	
SVIL	6840	broad.mit.edu	37	10	29813446	29813446	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:29813446G>A	uc001iut.1	-	14	3294	c.2541C>T	c.(2539-2541)AAC>AAT	p.N847N	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Silent_p.N421N	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	847					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				GATAGCGAGCGTTCATTCTCC	0.478000													20	89					0	0	0.008871	0	0	
ZEB1	6935	broad.mit.edu	37	10	31809813	31809813	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:31809813A>C	uc001ivs.3	+	7	1613	c.1550A>C	c.(1549-1551)GAG>GCG	p.E517A	ZEB1_uc001ivr.3_Missense_Mutation_p.E299A|ZEB1_uc010qee.1_Missense_Mutation_p.E299A|ZEB1_uc010qef.1_Missense_Mutation_p.E299A|ZEB1_uc009xlj.1_Missense_Mutation_p.E443A|ZEB1_uc010qeg.1_Missense_Mutation_p.E376A|ZEB1_uc009xlk.1_Missense_Mutation_p.E299A|ZEB1_uc001ivt.3_Missense_Mutation_p.E299A|ZEB1_uc001ivu.3_Missense_Mutation_p.E518A|ZEB1_uc001ivv.3_Missense_Mutation_p.E497A|ZEB1_uc010qeh.1_Missense_Mutation_p.E450A|ZEB1_uc009xlo.1_Missense_Mutation_p.E500A|ZEB1_uc009xlp.2_Missense_Mutation_p.E501A	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	517					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GTTAAGTCTGAGAAGGACAAA	0.363000													12	78					0	0	0.013537	0	0	
EPC1	80314	broad.mit.edu	37	10	32560982	32560982	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:32560982G>A	uc001iwg.1	-	13	2316	c.2046C>T	c.(2044-2046)ATC>ATT	p.I682I	EPC1_uc001iwi.3_Silent_p.I609I|EPC1_uc001iwh.1_Silent_p.I659I	NM_025209	NP_079485	Q9H2F5	EPC1_HUMAN	enhancer of polycomb 1	682					histone H2A acetylation|histone H4 acetylation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear membrane|Piccolo NuA4 histone acetyltransferase complex				ovary(3)|central_nervous_system(1)	4		Prostate(175;0.0199)				CATTCACCCCGATTCCAAGCA	0.388000													13	47					0	0	0.003163	0	0	
NRP1	8829	broad.mit.edu	37	10	33515169	33515169	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:33515169C>T	uc001iwx.3	-	7	1553	c.1030G>A	c.(1030-1032)GCC>ACC	p.A344T	NRP1_uc001iwv.3_Missense_Mutation_p.A344T|NRP1_uc009xlz.2_Missense_Mutation_p.A344T|NRP1_uc001iww.3_Missense_Mutation_p.A163T|NRP1_uc001iwy.3_Missense_Mutation_p.A344T|NRP1_uc001iwz.2_Missense_Mutation_p.A344T|NRP1_uc001ixa.2_Missense_Mutation_p.A344T|NRP1_uc001ixb.1_Missense_Mutation_p.A344T|NRP1_uc001ixc.1_Missense_Mutation_p.A344T	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	344	F5/8 type C 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TTTGAAATGGCGCCCTGTGTC	0.483000													13	51					0	0	0.013537	0	0	
FZD8	8325	broad.mit.edu	37	10	35928827	35928827	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:35928827G>A	uc001iyz.1	-	1	1536	c.1531C>T	c.(1531-1533)CGC>TGC	p.R511C		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	511	Cytoplasmic (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						ATGACCGAGCGGATGCGGAAG	0.637000													9	23					0	0	0.008291	0	0	
MARCH8	220972	broad.mit.edu	37	10	45954591	45954591	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:45954591T>C	uc001jci.1	-	6	787	c.548A>G	c.(547-549)GAG>GGG	p.E183G	MARCH8_uc001jch.2_Missense_Mutation_p.E465G|MARCH8_uc001jcj.1_Missense_Mutation_p.E183G|MARCH8_uc001jck.1_Missense_Mutation_p.E183G|uc001jcf.2_5'Flank|MARCH8_uc001jcg.1_Missense_Mutation_p.E52G	NM_001002266	NP_001002266	Q5T0T0	MARH8_HUMAN	cellular modulator of immune recognition isoform	183						cytoplasmic vesicle membrane|early endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding				0						CTGCTTGATCTCCTCAGCAGT	0.557000													14	57					0	0	0.003163	0	0	
AGAP7	653268	broad.mit.edu	37	10	51465248	51465248	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:51465248G>A	uc001jio.2	-	7	1334	c.1208C>T	c.(1207-1209)ACG>ATG	p.T403M	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	403	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CTCATATGTCGTGGCTTCAAA	0.512000													42	155					0	0	0.014410	0	0	
PRKG1	5592	broad.mit.edu	37	10	53564348	53564348	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:53564348T>G	uc001jjm.2	+	4	745	c.551T>G	c.(550-552)CTT>CGT	p.L184R	PRKG1_uc001jjn.2_Missense_Mutation_p.L199R|PRKG1_uc001jjo.2_Missense_Mutation_p.L199R	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	184	cGMP 1.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		TCTCCAGCTCTTGTAAATGTA	0.343000													6	47					0	0	0.001168	0	0	
RHOBTB1	9886	broad.mit.edu	37	10	62631271	62631271	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:62631271C>T	uc001jli.2	-	12	2498	c.2060G>A	c.(2059-2061)TGC>TAC	p.C687Y	RHOBTB1_uc001jlh.2_Missense_Mutation_p.C687Y|RHOBTB1_uc001jlj.2_Missense_Mutation_p.C687Y|RHOBTB1_uc001jlk.2_Missense_Mutation_p.C687Y|RHOBTB1_uc009xpe.1_Missense_Mutation_p.C625Y|RHOBTB1_uc009xpd.2_3'UTR|RHOBTB1_uc001jll.2_Missense_Mutation_p.C437Y	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	687					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					ATTCCAGAAGCACCACTTTCG	0.428000													6	140					0	0	0.001984	0	0	
SIRT1	23411	broad.mit.edu	37	10	69672625	69672625	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:69672625T>G	uc001jnd.2	+	8	1805	c.1752T>G	c.(1750-1752)ACT>ACG	p.T584T	SIRT1_uc010qis.1_Silent_p.T289T|SIRT1_uc009xpp.2_Silent_p.T392T|SIRT1_uc001jne.2_Silent_p.T281T	NM_012238	NP_036370	Q96EB6	SIRT1_HUMAN	sirtuin 1 isoform a	584					apoptosis|cell aging|cellular response to hydrogen peroxide|cellular response to starvation|chromatin silencing at rDNA|DNA repair|DNA replication|establishment of chromatin silencing|histone H3 deacetylation|interspecies interaction between organisms|maintenance of chromatin silencing|muscle organ development|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of fat cell differentiation|negative regulation of helicase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine acetylation|peptidyl-lysine deacetylation|positive regulation of anti-apoptosis|positive regulation of chromatin silencing|positive regulation of DNA repair|regulation of apoptosis|regulation of cell proliferation|regulation of endodeoxyribonuclease activity|regulation of protein import into nucleus, translocation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|rRNA processing|transcription, DNA-dependent|triglyceride mobilization|white fat cell differentiation	chromatin silencing complex|cytoplasm|nuclear euchromatin|nuclear heterochromatin|nuclear inner membrane|nucleolus|PML body|rDNA heterochromatin	bHLH transcription factor binding|histone binding|HLH domain binding|identical protein binding|mitogen-activated protein kinase binding|NAD+ binding|NAD-dependent histone deacetylase activity (H3-K9 specific)|p53 binding|protein C-terminus binding|transcription corepressor activity|zinc ion binding				0						AAGTACAAACTTCTAGGAATG	0.373000													9	99					0	0	0.004482	0	0	
MYPN	84665	broad.mit.edu	37	10	69882022	69882022	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:69882022G>A	uc001jnm.3	+	3	1012	c.827G>A	c.(826-828)CGG>CAG	p.R276Q	MYPN_uc001jnl.1_Missense_Mutation_p.R276Q|MYPN_uc001jnn.3_Intron|MYPN_uc001jno.3_Missense_Mutation_p.R276Q|MYPN_uc001jnp.1_Missense_Mutation_p.R276Q|MYPN_uc009xps.2_Missense_Mutation_p.R276Q|MYPN_uc009xpt.2_Missense_Mutation_p.R276Q|MYPN_uc010qit.1_5'UTR|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	276	Interaction with CARP.|Ig-like 1.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						CAAAAGTTACGGAGCAGAGAA	0.493000													12	70					0	0	0.013537	0	0	
SLC29A3	55315	broad.mit.edu	37	10	73082526	73082526	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:73082526A>C	uc001jrr.3	+	2	72	c.15A>C	c.(13-15)TCA>TCC	p.S5S	SLC29A3_uc001jrs.3_Silent_p.S5S|SLC29A3_uc010qjq.1_5'UTR|SLC29A3_uc001jrt.3_5'UTR|SLC29A3_uc001jru.3_5'UTR	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	5	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						CCGTTGTCTCAGAGGACGACT	0.572000													17	242					0	0	0.007413	0	0	
LRIT1	26103	broad.mit.edu	37	10	86001132	86001132	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:86001132A>C	uc001kcz.1	-	1	86	c.64T>G	c.(64-66)TTC>GTC	p.F22V		NM_015613	NP_056428	Q9P2V4	LRIT1_HUMAN	retina specific protein PAL	22	Lumenal (Potential).|LRRNT.					integral to endoplasmic reticulum membrane					0						GAGGGGCAGAAGCCCCGGGCC	0.662000													4	26					0	0	0.009096	0	0	
IFIT3	3437	broad.mit.edu	37	10	91098757	91098757	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:91098757T>G	uc001kgf.2	+	2	574	c.345T>G	c.(343-345)ATT>ATG	p.I115M	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron|IFIT3_uc001kgg.2_Missense_Mutation_p.I115M	NM_001549	NP_001540	O14879	IFIT3_HUMAN	interferon-induced protein with	115	TPR 2.				type I interferon-mediated signaling pathway		protein binding			central_nervous_system(1)	1						ATGCTCAGATTTATGTAGATA	0.423000													37	61					0	0	0.006230	0	0	
SORCS1	114815	broad.mit.edu	37	10	108459101	108459101	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:108459101T>G	uc001kym.2	-	9	1292	c.1284A>C	c.(1282-1284)CAA>CAC	p.Q428H	SORCS1_uc001kyl.2_Missense_Mutation_p.Q428H|SORCS1_uc009xxs.2_Missense_Mutation_p.Q428H|SORCS1_uc001kyn.1_Missense_Mutation_p.Q428H|SORCS1_uc001kyo.2_Missense_Mutation_p.Q428H	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	428	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		GGTTCCATTCTTGGACCGCTG	0.483000													3	46					0	0	0.004672	0	0	
GFRA1	2674	broad.mit.edu	37	10	117856235	117856235	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:117856235A>G	uc001lcj.2	-	7	1509	c.811T>C	c.(811-813)TCA>CCA	p.S271P	GFRA1_uc001lci.2_Missense_Mutation_p.S266P|GFRA1_uc009xyr.2_Missense_Mutation_p.S266P	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	271	3.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		ACAGACCTTGACTCTGGCTGG	0.502000													9	42					0	0	0.008291	0	0	
C10orf46	143384	broad.mit.edu	37	10	120467071	120467071	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:120467071C>A	uc001lds.1	-	4	1110	c.626G>T	c.(625-627)AGA>ATA	p.R209I	C10orf46_uc010qst.1_RNA	NM_153810	NP_722517	Q86Y37	CJ046_HUMAN	chromosome 10 open reading frame 46	209					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex	ubiquitin protein ligase binding				0		Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0131)		TATATTAAATCTTTCAATATA	0.408000													5	62					8.12818e-05	8.26529e-05	0.001984	1	0	
HTRA1	5654	broad.mit.edu	37	10	124273733	124273733	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:124273733T>C	uc001lgj.2	+	9	1429	c.1301T>C	c.(1300-1302)ATA>ACA	p.I434T		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	434	PDZ.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				AACGACGTCATAATCAGCATC	0.483000													57	240					0	0	0.014410	0	0	
CPXM2	119587	broad.mit.edu	37	10	125526505	125526505	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr10:125526505A>G	uc001lhk.1	-	10	1788	c.1463T>C	c.(1462-1464)CTG>CCG	p.L488P	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	488					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		ATTTTCCGACAGAAACCACTC	0.458000													13	55					0	0	0.004007	0	0	
OR51A7	119687	broad.mit.edu	37	11	4928674	4928674	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:4928674T>G	uc010qyq.1	+	1	75	c.75T>G	c.(73-75)ATT>ATG	p.I25M		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGCCCACATTTGGTTCTCCA	0.473000													13	78					0	0	0.013537	0	0	
LUZP2	338645	broad.mit.edu	37	11	25004695	25004695	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:25004695A>C	uc001mqs.2	+	9	855	c.621A>C	c.(619-621)AAA>AAC	p.K207N	LUZP2_uc009yif.2_Missense_Mutation_p.K121N|LUZP2_uc009yig.2_Missense_Mutation_p.K165N	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	207	Potential.					extracellular region				ovary(1)|skin(1)	2						AAGCAATGAAAGAGACTGTGC	0.418000													27	174					0	0	0.010818	0	0	
TTC17	55761	broad.mit.edu	37	11	43425686	43425686	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:43425686G>A	uc001mxi.2	+	11	1485	c.1471G>A	c.(1471-1473)GCA>ACA	p.A491T	TTC17_uc001mxh.2_Missense_Mutation_p.A491T|TTC17_uc010rfj.1_Missense_Mutation_p.A434T|TTC17_uc001mxj.2_Missense_Mutation_p.A261T	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	491							binding			ovary(5)	5						GGACTCTGATGCATATAGGGT	0.428000													23	164					0	0	0.005443	0	0	
CKAP5	9793	broad.mit.edu	37	11	46831385	46831385	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:46831385T>C	uc001ndi.1	-	6	780	c.670A>G	c.(670-672)AGT>GGT	p.S224G	CKAP5_uc009ylg.1_Missense_Mutation_p.S110G|CKAP5_uc001ndj.1_Missense_Mutation_p.S224G	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	224					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						CTAGGAGCACTTGTTGGCAGT	0.388000													15	142					0	0	0.004007	0	0	
LOC440040	440040	broad.mit.edu	37	11	49598071	49598071	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:49598071G>C	uc010rhy.1	+	2	662	c.184G>C	c.(184-186)GGC>CGC	p.G62R	LOC440040_uc009ymb.2_Missense_Mutation_p.G62R	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						CATCACACTGGGCTGTGAGAT	0.522000													5	20					0	0	0.000602	0	0	
OR4A5	81318	broad.mit.edu	37	11	51412114	51412114	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:51412114A>C	uc001nhi.1	-	1	282	c.282T>G	c.(280-282)GGT>GGG	p.G94G		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				GGCCCATGCAACCTTGGAAGG	0.448000													8	34					0	0	0.003080	0	0	
Unknown	0	broad.mit.edu	37	11	55061227	55061227	+	RNA	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:55061227T>C	uc001nhl.1	-	5		c.956A>G								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		CAGCAGAGACTCATACCTGCA	0.418000													5	25					0	0	0.000602	0	0	
OR5L1	219437	broad.mit.edu	37	11	55579495	55579495	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:55579495T>G	uc001nhw.1	+	1	553	c.553T>G	c.(553-555)TTA>GTA	p.L185V		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				ACCTCCTGTCTTAAGTCTTGC	0.433000													30	134					0	0	0.009535	0	0	
OR5T1	390155	broad.mit.edu	37	11	56043468	56043468	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:56043468T>G	uc001nio.1	+	1	354	c.354T>G	c.(352-354)ACT>ACG	p.T118T		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	118	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					TTGCTTGTACTTTTGGAACCA	0.403000													31	144					0	0	0.010818	0	0	
OR8H1	219469	broad.mit.edu	37	11	56058069	56058069	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:56058069A>C	uc010rje.1	-	1	470	c.470T>G	c.(469-471)GTC>GGC	p.V157G		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					AACCACATTGACAAAGGAGTT	0.458000													12	64					0	0	0.013537	0	0	
OR5B2	390190	broad.mit.edu	37	11	58189836	58189836	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:58189836T>C	uc010rkg.1	-	1	899	c.899A>G	c.(898-900)AAG>AGG	p.K300R		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CAACACTTTCTTGAATGCATT	0.393000													9	57					0	0	0.008291	0	0	
DTX4	23220	broad.mit.edu	37	11	58962713	58962713	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:58962713C>T	uc001nns.2	+	7	1664	c.1407C>T	c.(1405-1407)ACC>ACT	p.T469T	DTX4_uc001nnr.2_Silent_p.T363T	NM_015177	NP_055992	Q9Y2E6	DTX4_HUMAN	deltex 4 homolog	469					Notch signaling pathway	cytoplasm	zinc ion binding			lung(2)|central_nervous_system(1)	3		all_epithelial(135;0.125)				CCTGCAAGACCATTTATGGGG	0.547000													22	68					0	0	0.003954	0	0	
PGA5	5222	broad.mit.edu	37	11	61017153	61017153	+	Silent	SNP	C	T	T	rs139579497	byFrequency	TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:61017153C>T	uc001nqz.2	+	7	816	c.786C>T	c.(784-786)AAC>AAT	p.N262N		NM_014224	NP_055039	P00790	PEPA_HUMAN	pepsinogen 5, group I precursor	262					digestion|proteolysis	extracellular region	aspartic-type endopeptidase activity			skin(1)	1						TCACCATGAACGGAGAGACCA	0.587000													28	141					0	0	0.005443	0	0	
CCDC88B	283234	broad.mit.edu	37	11	64119683	64119683	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:64119683C>T	uc001nzy.2	+	19	3225	c.3181C>T	c.(3181-3183)CGG>TGG	p.R1061W	CCDC88B_uc009ypo.1_Missense_Mutation_p.R1058W|CCDC88B_uc001oaa.2_Missense_Mutation_p.R213W|CCDC88B_uc001oab.1_5'Flank|CCDC88B_uc001oac.2_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	1061	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GCGGGCGGCACGGCAGTCCCA	0.692000													10	21					0	0	0.008291	0	0	
FRMD8	83786	broad.mit.edu	37	11	65178738	65178738	+	Silent	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:65178738G>C	uc001odu.3	+	11	1494	c.1302G>C	c.(1300-1302)CCG>CCC	p.P434P	FRMD8_uc009yqj.2_Silent_p.P378P|FRMD8_uc010rof.1_Silent_p.P400P	NM_031904	NP_114110	Q9BZ67	FRMD8_HUMAN	FERM domain containing 8	434						cytoskeleton	binding			lung(1)|pancreas(1)	2						GAGTGAAGCCGAAGCGCACCA	0.672000													7	42					0	0	0.001984	0	0	
PRSS23	11098	broad.mit.edu	37	11	86519692	86519692	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:86519692T>G	uc001pcb.2	+	2	1223	c.1007T>G	c.(1006-1008)ATT>AGT	p.I336S	PRSS23_uc001pcc.1_Intron|PRSS23_uc010rts.1_Missense_Mutation_p.I304S	NM_007173	NP_009104	O95084	PRS23_HUMAN	protease, serine, 23 precursor	336					proteolysis	extracellular region|nucleus	serine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GAGCGAAAAATTATTGGCATT	0.522000													22	103					0	0	0.010504	0	0	
GRM5	2915	broad.mit.edu	37	11	88780736	88780736	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:88780736G>A	uc001pcq.2	-	1	505	c.305C>T	c.(304-306)TCG>TTG	p.S102L	GRM5_uc009yvm.2_Missense_Mutation_p.S102L|GRM5_uc009yvn.1_Missense_Mutation_p.S102L	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	102	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	GGCCACAGCCGAATGCCAGCA	0.527000													11	37					0	0	0.010729	0	0	
CCDC67	159989	broad.mit.edu	37	11	93170867	93170867	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:93170867A>C	uc001pdq.2	+	14	1897	c.1797A>C	c.(1795-1797)AAA>AAC	p.K599N		NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	599	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				CCAAGCTAAAACAAAATAGAC	0.338000													20	117					0	0	0.010504	0	0	
CNTN5	53942	broad.mit.edu	37	11	99827733	99827733	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:99827733G>A	uc001pga.2	+	8	1208	c.869G>A	c.(868-870)CGT>CAT	p.R290H	CNTN5_uc009ywv.1_Missense_Mutation_p.R290H|CNTN5_uc001pfz.2_Missense_Mutation_p.R290H|CNTN5_uc001pgb.2_Missense_Mutation_p.R216H	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	290					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTCACTCTGCGTAATGATGGT	0.398000													4	41					0	0	0.009096	0	0	
KIAA1377	57562	broad.mit.edu	37	11	101815057	101815057	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:101815057C>T	uc001pgm.2	+	3	580	c.310C>T	c.(310-312)CTT>TTT	p.L104F	KIAA1377_uc001pgn.2_Missense_Mutation_p.L60F|KIAA1377_uc009yxa.1_5'UTR	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	104	Potential.						protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AGAACAAATACTTCAACAAAG	0.373000													10	44					0	0	0.008291	0	0	
GUCY1A2	2977	broad.mit.edu	37	11	106680788	106680788	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:106680788T>G	uc001pjg.1	-	5	2013	c.1623A>C	c.(1621-1623)CAA>CAC	p.Q541H	GUCY1A2_uc010rvo.1_Missense_Mutation_p.Q562H|GUCY1A2_uc009yxn.1_Missense_Mutation_p.Q541H	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	541	Guanylate cyclase.				intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		TGCTGATTACTTGCATGGGAG	0.413000													11	66					0	0	0.008291	0	0	
USP28	57646	broad.mit.edu	37	11	113698007	113698007	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:113698007G>C	uc001poh.2	-	11	1168	c.1135C>G	c.(1135-1137)CCA>GCA	p.P379A	USP28_uc001pog.2_Missense_Mutation_p.P87A|USP28_uc010rwy.1_Missense_Mutation_p.P254A|USP28_uc001poi.2_5'UTR|USP28_uc001poj.3_Missense_Mutation_p.P379A	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	379					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		ATTTTCTCTGGCTGCCCAAGG	0.393000													13	44					0	0	0.001855	0	0	
ZBTB16	7704	broad.mit.edu	37	11	113934741	113934741	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:113934741A>G	uc001pop.2	+	2	983	c.719A>G	c.(718-720)GAG>GGG	p.E240G	ZBTB16_uc001poo.1_Missense_Mutation_p.E240G|ZBTB16_uc001poq.2_Missense_Mutation_p.E240G	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	240					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		GGGGTGGCTGAGGTGAAGACG	0.642000													4	23					0	0	0.009096	0	0	
FAM55A	120400	broad.mit.edu	37	11	114400955	114400955	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:114400955T>G	uc001ppa.2	-	3	766	c.349A>C	c.(349-351)ACC>CCC	p.T117P	FAM55A_uc010rxd.1_5'UTR|FAM55A_uc001ppb.1_Missense_Mutation_p.T259P	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	259						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		TTCCGGGTGGTCATGTAGGTC	0.443000													14	86					0	0	0.004007	0	0	
FAM55B	120406	broad.mit.edu	37	11	114569142	114569142	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:114569142T>C	uc009yyy.2	+	3	606	c.508T>C	c.(508-510)TTC>CTC	p.F170L		NM_182495	NP_872301	Q96DL1	FA55B_HUMAN	hypothetical protein LOC120406	170						integral to membrane				ovary(1)	1						GGTGACTGACTTCAACAACGG	0.552000													4	25					0	0	0.009096	0	0	
C11orf63	79864	broad.mit.edu	37	11	122830032	122830032	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:122830032A>C	uc001pym.2	+	9	2513	c.2216A>C	c.(2215-2217)AAT>ACT	p.N739T		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	739										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		GAACAAAAAAATCCAACCTAT	0.408000													14	84					0	0	0.003163	0	0	
TMEM225	338661	broad.mit.edu	37	11	123755343	123755343	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:123755343T>C	uc001pzi.2	-	2	390	c.182A>G	c.(181-183)GAT>GGT	p.D61G		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	61						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						TTTCAGGTCATCTGTTGGAAA	0.428000													4	41					0	0	0.000602	0	0	
ROBO4	54538	broad.mit.edu	37	11	124766979	124766979	+	Silent	SNP	C	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr11:124766979C>A	uc001qbg.2	-	2	389	c.249G>T	c.(247-249)CTG>CTT	p.L83L	ROBO4_uc010sas.1_Intron|ROBO4_uc001qbh.2_Intron|ROBO4_uc010sat.1_5'Flank	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	83	Ig-like C2-type 1.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		TCCCATCAGGCAGGAGGTGGT	0.657000													8	48					0.00307968	0.00311661	0.003080	1	0	
TEAD4	7004	broad.mit.edu	37	12	3131176	3131176	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:3131176A>C	uc010sej.1	+	10	1164	c.887A>C	c.(886-888)AAG>ACG	p.K296T	TEAD4_uc010sek.1_Missense_Mutation_p.K253T|TEAD4_uc001qln.2_Missense_Mutation_p.K168T	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	297				K->A: Important loss of interaction with YAP1 and complete loss of transforming ability.	hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			TTTCTTGTGAAGTTCTGGGTA	0.537000													19	102					0	0	0.008871	0	0	
A2ML1	144568	broad.mit.edu	37	12	9004872	9004872	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:9004872A>C	uc001quz.3	+	20	2628	c.2530A>C	c.(2530-2532)AGT>CGT	p.S844R	A2ML1_uc001qva.1_Missense_Mutation_p.S424R|A2ML1_uc010sgm.1_Missense_Mutation_p.S344R	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	688						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TCAGACCTCCAGTTGTCTCTG	0.493000													22	182					0	0	0.012319	0	0	
KLRF1	51348	broad.mit.edu	37	12	9995000	9995000	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:9995000T>G	uc010sgw.1	+	6	619	c.555T>G	c.(553-555)ACT>ACG	p.T185T	KLRF1_uc009zgw.2_Silent_p.T136T|KLRF1_uc009zgx.2_RNA|KLRF1_uc001qwm.2_RNA|KLRF1_uc009zgy.2_RNA|KLRF1_uc009zgz.2_Intron|KLRF1_uc009zha.2_Intron	NM_016523	NP_057607	Q9NZS2	KLRF1_HUMAN	killer cell lectin-like receptor subfamily F,	186	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	MHC class I receptor activity|sugar binding			large_intestine(1)	1						TGACATGGACTTGGGTGGATG	0.373000													19	52					0	0	0.012319	0	0	
CLEC1B	51266	broad.mit.edu	37	12	10149597	10149597	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:10149597C>T	uc001qwu.2	-	4	486	c.286G>A	c.(286-288)GGT>AGT	p.G96S	CLEC1B_uc009zhd.2_Missense_Mutation_p.G63S	NM_016509	NP_057593	Q9P126	CLC1B_HUMAN	C-type lectin domain family 1, member B isoform	96	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	protein binding|sugar binding|transmembrane receptor activity				0						CATTTATGACCTTCTGGAGAA	0.408000													24	55					0	0	0.003954	0	0	
ALG10B	144245	broad.mit.edu	37	12	38714574	38714574	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:38714574G>A	uc001rln.3	+	3	1120	c.981G>A	c.(979-981)TTG>TTA	p.L327L	ALG10B_uc001rlo.3_Silent_p.L297L|ALG10B_uc010skk.1_Silent_p.L267L	NM_001013620	NP_001013642	Q5I7T1	AG10B_HUMAN	asparagine-linked glycosylation 10 homolog B	327	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|plasma membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|skin(1)	3	Esophageal squamous(101;0.187)	Lung NSC(34;0.204)|all_lung(34;0.235)				TTCTGTTTTTGGTGGTTACCT	0.318000													32	172					0	0	0.009535	0	0	
CPNE8	144402	broad.mit.edu	37	12	39233729	39233729	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:39233729A>T	uc001rls.1	-	5	403	c.319T>A	c.(319-321)TTA>ATA	p.L107I		NM_153634	NP_705898	Q86YQ8	CPNE8_HUMAN	copine VIII	107	C2 1.									pancreas(1)	1	Esophageal squamous(101;0.187)	Lung NSC(34;0.137)|Melanoma(24;0.152)|all_lung(34;0.157)				TGTTTGGATAAGTTGGGGCTC	0.239000													7	29					0	0	0.003080	0	0	
ADAMTS20	80070	broad.mit.edu	37	12	43840490	43840490	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:43840490T>G	uc010skx.1	-	15	2105	c.2105A>C	c.(2104-2106)AAC>ACC	p.N702T		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	702	Cys-rich.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GGCACTGGAGTTTAACACGTG	0.318000													11	47					0	0	0.008291	0	0	
LIMA1	51474	broad.mit.edu	37	12	50616015	50616015	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:50616015C>T	uc001rwj.3	-	4	593	c.419G>A	c.(418-420)GGT>GAT	p.G140D	LIMA1_uc001rwh.3_5'UTR|LIMA1_uc001rwi.3_5'UTR|LIMA1_uc001rwk.3_Missense_Mutation_p.G140D|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	140					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						GGGATATCGACCCTGAACGAG	0.473000													26	61					0	0	0.005443	0	0	
CALCOCO1	57658	broad.mit.edu	37	12	54108389	54108389	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:54108389T>A	uc001sef.2	-	11	1619	c.1475A>T	c.(1474-1476)GAG>GTG	p.E492V	CALCOCO1_uc001see.2_5'UTR|CALCOCO1_uc010som.1_Missense_Mutation_p.E407V|CALCOCO1_uc010son.1_Missense_Mutation_p.E369V|CALCOCO1_uc001seh.2_Missense_Mutation_p.E492V|CALCOCO1_uc009znd.2_Missense_Mutation_p.E492V|CALCOCO1_uc001seg.2_Missense_Mutation_p.E317V|CALCOCO1_uc010soo.1_Missense_Mutation_p.E485V	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform	492	Potential.				steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						CACCTGTTTCTCCTCCTGTAA	0.527000													8	45					0	0	0.003080	0	0	
KIAA0748	9840	broad.mit.edu	37	12	55356615	55356615	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:55356615G>A	uc001sgn.3	-	9	1177	c.1067C>T	c.(1066-1068)TCT>TTT	p.S356F	KIAA0748_uc001sgl.3_Missense_Mutation_p.S218F|KIAA0748_uc001sgm.3_Missense_Mutation_p.S103F|KIAA0748_uc010spb.1_Missense_Mutation_p.S103F|KIAA0748_uc010spc.1_Missense_Mutation_p.S218F|KIAA0748_uc010spd.1_Missense_Mutation_p.S356F|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	356										ovary(1)|central_nervous_system(1)	2						TGGATAGGGAGAAGTGGGCAA	0.517000													19	39					0	0	0.006122	0	0	
IKZF4	64375	broad.mit.edu	37	12	56421645	56421645	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:56421645C>G	uc001sjb.1	+	6	788	c.629C>G	c.(628-630)TCT>TGT	p.S210C	IKZF4_uc010sqa.1_Missense_Mutation_p.S163C|IKZF4_uc001sjc.1_Missense_Mutation_p.S210C|IKZF4_uc001sjd.1_Missense_Mutation_p.S108C|IKZF4_uc009zoi.1_Missense_Mutation_p.S165C|IKZF4_uc001sje.1_Missense_Mutation_p.S169C	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	210					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			AAGCTGCACTCTGGGGAGAAG	0.562000													7	24					0	0	0.001984	0	0	
TMEM19	55266	broad.mit.edu	37	12	72083376	72083376	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:72083376T>C	uc001sws.2	+	2	719	c.136T>C	c.(136-138)TTA>CTA	p.L46L	TMEM19_uc001swr.1_Silent_p.L32L|TMEM19_uc009zru.1_RNA	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19	46						integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		TTCAGGTAACTTACGACCTAT	0.398000													21	134					0	0	0.010504	0	0	
TRHDE	29953	broad.mit.edu	37	12	73056901	73056901	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:73056901G>A	uc001sxa.2	+	19	3031	c.3001G>A	c.(3001-3003)GAA>AAA	p.E1001K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	1001	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GGAAACTGTCGAAGCCAATGT	0.373000													10	77					0	0	0.008291	0	0	
OSBPL8	114882	broad.mit.edu	37	12	76784288	76784288	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:76784288C>T	uc001sye.1	-	11	1559	c.1079G>A	c.(1078-1080)AGA>AAA	p.R360K	OSBPL8_uc001syf.1_Missense_Mutation_p.R318K|OSBPL8_uc001syg.1_Missense_Mutation_p.R318K|OSBPL8_uc001syh.1_Missense_Mutation_p.R335K	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	360					lipid transport		lipid binding			ovary(1)	1						GTCATCTTGTCTTTCTGATGT	0.388000													27	121					0	0	0.005443	0	0	
NAV3	89795	broad.mit.edu	37	12	78444768	78444768	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:78444768G>A	uc001syp.2	+	11	2530	c.2357G>A	c.(2356-2358)CGT>CAT	p.R786H	NAV3_uc001syo.2_Missense_Mutation_p.R786H|NAV3_uc010sub.1_Missense_Mutation_p.R286H	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	786						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ACGCCTCTCCGTCGAGCTGCT	0.557000										HNSCC(70;0.22)			6	38					0	0	0.001168	0	0	
NAV3	89795	broad.mit.edu	37	12	78573437	78573437	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:78573437T>G	uc001syp.2	+	29	5665	c.5492T>G	c.(5491-5493)ATC>AGC	p.I1831S	NAV3_uc001syo.2_Missense_Mutation_p.I1809S|NAV3_uc010sub.1_Missense_Mutation_p.I1288S|NAV3_uc009zsf.2_Missense_Mutation_p.I640S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1831	Potential.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CTTGATCAGATCCGGGAAGCC	0.433000										HNSCC(70;0.22)			16	90					0	0	0.007413	0	0	
PPFIA2	8499	broad.mit.edu	37	12	81719631	81719631	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:81719631T>G	uc001szo.1	-	22	2728	c.2567A>C	c.(2566-2568)GAA>GCA	p.E856A	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	782										ovary(3)|lung(2)|pancreas(1)	6						AGCTGCAGCTTCAGTCTCCAT	0.423000													6	45					0	0	0.003080	0	0	
FGD6	55785	broad.mit.edu	37	12	95566467	95566467	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:95566467G>C	uc001tdp.3	-	3	2719	c.2495C>G	c.(2494-2496)TCT>TGT	p.S832C	FGD6_uc009zsx.2_5'UTR	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	832				S -> P (in Ref. 3; CAD98096).	actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CTCCTCATCAGAGGGAAGGTC	0.433000													32	200					0	0	0.009535	0	0	
SCYL2	55681	broad.mit.edu	37	12	100685289	100685289	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:100685289A>C	uc001thn.2	+	3	236	c.186A>C	c.(184-186)GCA>GCC	p.A62A	SCYL2_uc009ztw.1_5'UTR|SCYL2_uc001thm.1_Silent_p.A62A	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	62	Protein kinase.				endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						AGGAAGTGGCAGTTTTTGTCT	0.279000													8	58					0	0	0.003080	0	0	
WSCD2	9671	broad.mit.edu	37	12	108634185	108634185	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:108634185C>T	uc001tms.2	+	8	1953	c.1209C>T	c.(1207-1209)AGC>AGT	p.S403S	WSCD2_uc001tmt.2_Silent_p.S403S|WSCD2_uc001tmu.2_Silent_p.S151S	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	403						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						CGCACGAAAGCGGCCAGAAAG	0.607000													5	186					0	0	0.001168	0	0	
NAA25	80018	broad.mit.edu	37	12	112471065	112471065	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:112471065A>G	uc001ttm.2	-	23	2788	c.2768T>C	c.(2767-2769)CTT>CCT	p.L923P	NAA25_uc001ttn.3_RNA	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	923						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						TTCTAAAATAAGTTCTTCAAG	0.373000													15	65					0	0	0.004007	0	0	
DNAH10	196385	broad.mit.edu	37	12	124414973	124414973	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr12:124414973G>A	uc001uft.3	+	72	12308	c.12283G>A	c.(12283-12285)GAC>AAC	p.D4095N	DNAH10_uc001ufu.3_Missense_Mutation_p.D8N	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	4095	TPR 5.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ACGGGCCATCGACAGCTTTGA	0.557000													8	25					0	0	0.003080	0	0	
SACS	26278	broad.mit.edu	37	13	23908520	23908520	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr13:23908520A>C	uc001uon.2	-	10	10084	c.9495T>G	c.(9493-9495)ACT>ACG	p.T3165T	SACS_uc001uoo.2_Silent_p.T3018T|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3165					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TTGCATCAAAAGTTTGCAAAA	0.318000													7	38					0	0	0.004482	0	0	
RNF17	56163	broad.mit.edu	37	13	25399903	25399903	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr13:25399903A>C	uc001upr.2	+	16	2279	c.2238A>C	c.(2236-2238)AAA>AAC	p.K746N	RNF17_uc010tdd.1_Missense_Mutation_p.K605N|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.K746N|RNF17_uc001ups.2_Missense_Mutation_p.K685N	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	746	Tudor 1.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ACCGAGCAAAAGTTATCGGTA	0.368000													17	63					0	0	0.006122	0	0	
EEF1DP3	196549	broad.mit.edu	37	13	32527262	32527262	+	RNA	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr13:32527262T>G	uc001utu.2	+	4		c.1020T>G			EEF1DP3_uc010tdv.1_Intron|uc001utv.2_RNA					Homo sapiens similar to hypothetical protein FLJ20897, mRNA (cDNA clone IMAGE:5267252).												0						CCTGCTGGACTTCAAGCCTTG	0.652000													3	26					0	0	0.004672	0	0	
SPG20	23111	broad.mit.edu	37	13	36888405	36888405	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr13:36888405T>G	uc001uvn.2	-	7	1712	c.1442A>C	c.(1441-1443)AAG>ACG	p.K481T	SPG20_uc010ten.1_Missense_Mutation_p.K471T|SPG20_uc001uvm.2_Missense_Mutation_p.K481T|SPG20_uc001uvo.2_Missense_Mutation_p.K481T|SPG20_uc001uvq.2_Missense_Mutation_p.K481T	NM_001142296	NP_001135768	Q8N0X7	SPG20_HUMAN	spartin	481					cell death	cytoplasm	ubiquitin protein ligase binding				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;2.42e-08)|Epithelial(112;1.58e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00128)|BRCA - Breast invasive adenocarcinoma(63;0.0125)|GBM - Glioblastoma multiforme(144;0.026)		TGTAGCTTGCTTCGCTATATA	0.393000													17	107					0	0	0.014323	0	0	
SUCLA2	8803	broad.mit.edu	37	13	48562750	48562750	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr13:48562750G>C	uc001vbs.2	-	4	517	c.460C>G	c.(460-462)CAA>GAA	p.Q154E	SUCLA2_uc010tgb.1_Missense_Mutation_p.Q94E|SUCLA2_uc010tgc.1_Missense_Mutation_p.Q20E|SUCLA2_uc010tgd.1_Missense_Mutation_p.Q94E|SUCLA2_uc001vbt.1_RNA|SUCLA2_uc001vbu.1_Missense_Mutation_p.Q154E	NM_003850	NP_003841	Q9P2R7	SUCB1_HUMAN	succinate-CoA ligase, ADP-forming, beta subunit	154	ATP-grasp.				succinyl-CoA pathway|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			central_nervous_system(1)	1		all_cancers(8;1.13e-24)|all_epithelial(8;1.78e-13)|all_lung(13;2.85e-06)|Breast(56;0.000141)|Lung NSC(96;0.000226)|all_hematologic(8;0.000885)|Prostate(109;0.00132)|Acute lymphoblastic leukemia(8;0.0167)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;2.1e-06)	Succinic acid(DB00139)	ACCAATACTTGATTGCATATT	0.353000													3	96					0	0	0.009096	0	0	
BTF3L1	690	broad.mit.edu	37	13	77502648	77502648	+	RNA	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr13:77502648A>C	uc001vkb.3	+	1		c.64A>C				NR_026983				Homo sapiens basic transcription factor 3, like 1, mRNA (cDNA clone IMAGE:40013884).												0						TTAGGGGTAAACAATATCCCT	0.279000													4	15					0	0	0.009096	0	0	
GPC5	2262	broad.mit.edu	37	13	92560224	92560224	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr13:92560224A>C	uc010tif.1	+	6	1680	c.1314A>C	c.(1312-1314)AAA>AAC	p.K438N		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	438						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				ATGGAATCAAAGCCCAGTCTG	0.393000													12	66					0	0	0.001855	0	0	
MYO16	23026	broad.mit.edu	37	13	109859011	109859011	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr13:109859011T>G	uc001vqt.1	+	35	5530	c.5404T>G	c.(5404-5406)TTG>GTG	p.L1802V	MYO16_uc010agk.1_Missense_Mutation_p.L1824V	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1802					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			GCAGGAACTCTTGGACTGGAG	0.552000													11	63					0	0	0.010729	0	0	
CHD8	57680	broad.mit.edu	37	14	21859686	21859686	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr14:21859686C>T	uc001was.1	-	36	6258	c.6164G>A	c.(6163-6165)CGG>CAG	p.R2055Q	CHD8_uc001war.1_Missense_Mutation_p.R1951Q	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	2334					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CAGTTCAGCCCGGCGAGGGGC	0.527000													5	17					0	0	0.001168	0	0	
SLC35F4	341880	broad.mit.edu	37	14	58063439	58063439	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr14:58063439T>G	uc001xdb.1	-	1	177	c.177A>C	c.(175-177)ACA>ACC	p.T59T	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Intron	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						AGCGAGCAAGTGTTGAATGTA	0.378000													9	31					0	0	0.006214	0	0	
DACT1	51339	broad.mit.edu	37	14	59112838	59112838	+	Missense_Mutation	SNP	G	C	C	rs145184753		TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr14:59112838G>C	uc001xdw.2	+	4	1661	c.1497G>C	c.(1495-1497)GAG>GAC	p.E499D	DACT1_uc010trv.1_Missense_Mutation_p.E218D|DACT1_uc001xdx.2_Missense_Mutation_p.E462D|DACT1_uc010trw.1_Missense_Mutation_p.E218D	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	499					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						CGCCGCAGGAGAACAAAGTTG	0.607000													16	79					0	0	0.008871	0	0	
KCNH5	27133	broad.mit.edu	37	14	63416924	63416924	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr14:63416924G>A	uc001xfx.2	-	7	1347	c.1296C>T	c.(1294-1296)ACC>ACT	p.T432T	KCNH5_uc001xfy.2_Silent_p.T432T|KCNH5_uc001xfz.1_Silent_p.T374T|KCNH5_uc001xga.2_Silent_p.T374T	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	432	Selectivity filter (By similarity).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CAAATCCTATGGTTGTAAGGC	0.418000													18	41					0	0	0.006122	0	0	
KCNK10	54207	broad.mit.edu	37	14	88707082	88707082	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr14:88707082G>A	uc001xwo.2	-	3	927	c.470C>T	c.(469-471)GCC>GTC	p.A157V	KCNK10_uc001xwm.2_Missense_Mutation_p.A162V|KCNK10_uc001xwn.2_Missense_Mutation_p.A162V	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	157					signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						AAAGAAAAAGGCACTGCCGAG	0.478000													31	109					0	0	0.007291	0	0	
ATG2B	55102	broad.mit.edu	37	14	96777946	96777946	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr14:96777946C>T	uc001yfi.2	-	27	4288	c.3923G>A	c.(3922-3924)CGT>CAT	p.R1308H		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1308										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		ATCCATCACACGAACATAATC	0.313000													8	50					0	0	0.004482	0	0	
RASGRP1	10125	broad.mit.edu	37	15	38805039	38805039	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:38805039C>T	uc001zke.3	-	7	972	c.794G>A	c.(793-795)CGC>CAC	p.R265H	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Missense_Mutation_p.R127H|RASGRP1_uc010bbg.2_Missense_Mutation_p.R127H|RASGRP1_uc001zkd.3_Missense_Mutation_p.R265H	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	265	Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		CGGCGTGGGGCGGCTGAGAAC	0.502000													7	41					0	0	0.001984	0	0	
CATSPER2	117155	broad.mit.edu	37	15	43924471	43924471	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:43924471A>T	uc001zsh.2	-	12	1702	c.1487T>A	c.(1486-1488)CTC>CAC	p.L496H	STRC_uc010udz.1_RNA|CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Missense_Mutation_p.L494H|CATSPER2_uc001zsj.2_Missense_Mutation_p.L494H	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	496	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		ATATCGGAAGAGTGAGTCTCT	0.483000													11	95					0	0	0.010729	0	0	
Unknown	0	broad.mit.edu	37	15	44020938	44020938	+	RNA	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:44020938A>T	uc010uec.1	-	1		c.11T>A								Homo sapiens cDNA FLJ16411 fis, clone BRACE2016362.																		ATATCGGAAGAGTGAGTCTCT	0.468000													4	26					0	0	0.000602	0	0	
SEMA6D	80031	broad.mit.edu	37	15	48062707	48062707	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:48062707A>C	uc010bek.2	+	19	2307	c.1947A>C	c.(1945-1947)GAA>GAC	p.E649D	SEMA6D_uc001zvw.2_Missense_Mutation_p.E587D|SEMA6D_uc001zvy.2_Missense_Mutation_p.E649D|SEMA6D_uc001zvz.2_Missense_Mutation_p.E593D|SEMA6D_uc001zwa.2_Missense_Mutation_p.K586T|SEMA6D_uc001zwb.2_Missense_Mutation_p.E587D|SEMA6D_uc001zwc.2_Missense_Mutation_p.E574D	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	649	Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		TACGATGGGAAGTCCAGTCTG	0.438000													18	121					0	0	0.012319	0	0	
ADAM10	102	broad.mit.edu	37	15	58913755	58913755	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:58913755T>C	uc002afd.1	-	11	1870	c.1426A>G	c.(1426-1428)AGT>GGT	p.S476G	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Missense_Mutation_p.S175G|ADAM10_uc002afe.1_Intron|ADAM10_uc002aff.1_Missense_Mutation_p.S13G	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	476	Extracellular (Potential).|Disintegrin.				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		CACTGGTCACTATAGCCACAA	0.403000													43	76					0	0	0.008740	0	0	
FOXB1	27023	broad.mit.edu	37	15	60297500	60297500	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:60297500A>C	uc002agj.1	+	2	817	c.338A>C	c.(337-339)AAG>ACG	p.K113T	FOXB1_uc010bgh.1_Intron	NM_012182	NP_036314	Q99853	FOXB1_HUMAN	forkhead box B1	113					axon target recognition|cell migration in diencephalon|epithelial cell differentiation involved in mammary gland alveolus development|floor plate development|hypothalamus cell migration|inferior colliculus development|lactation|mammillothalamic axonal tract development|negative regulation of neuron apoptosis|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|telencephalon cell migration|visual learning	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|central_nervous_system(1)	2						AAGGTGCTTAAGTCCGACCAC	0.697000													4	30					0	0	0.009096	0	0	
NOX5	79400	broad.mit.edu	37	15	69327747	69327747	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:69327747A>C	uc002ars.1	+	6	929	c.909A>C	c.(907-909)CAA>CAC	p.Q303H	NOX5_uc002arp.1_Missense_Mutation_p.Q285H|NOX5_uc002arq.1_Missense_Mutation_p.Q257H|NOX5_uc010bid.1_Missense_Mutation_p.Q268H|NOX5_uc002arr.1_Missense_Mutation_p.Q275H|NOX5_uc010bie.1_Missense_Mutation_p.Q103H|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	303	Ferric oxidoreductase.|Cytoplasmic (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GGCTGGCTCAAGTCCTACCAC	0.617000													5	37					0	0	0.001168	0	0	
CCDC33	80125	broad.mit.edu	37	15	74572359	74572359	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:74572359T>C	uc002axo.2	+	8	1209	c.815T>C	c.(814-816)TTC>TCC	p.F272S	CCDC33_uc002axp.2_Missense_Mutation_p.F94S	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	475							protein binding			ovary(3)|skin(2)	5						TCCTTCCTCTTCCAAGGCCGA	0.612000													8	35					0	0	0.006214	0	0	
WHAMM	123720	broad.mit.edu	37	15	83499800	83499800	+	Silent	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:83499800A>G	uc002bje.2	+	9	2597	c.2091A>G	c.(2089-2091)CCA>CCG	p.P697P		NM_001080435	NP_001073904	Q8TF30	WHAMM_HUMAN	WAS protein homolog associated with actin, golgi	697						cytoplasmic vesicle membrane|ER-Golgi intermediate compartment|Golgi apparatus	actin binding				0						CTGAGCGACCACGTGACTCCT	0.498000													37	212					0	0	0.007835	0	0	
ACAN	176	broad.mit.edu	37	15	89391183	89391183	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:89391183A>C	uc010upo.1	+	9	2020	c.1646A>C	c.(1645-1647)AAG>ACG	p.K549T	ACAN_uc002bmx.2_Missense_Mutation_p.K549T|ACAN_uc010upp.1_Missense_Mutation_p.K549T|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	549					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GTGGGTGACAAGGACAGCAGC	0.572000													16	115					0	0	0.004007	0	0	
ADAMTS17	170691	broad.mit.edu	37	15	100649236	100649236	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr15:100649236G>A	uc002bvv.1	-	14	2053	c.1974C>T	c.(1972-1974)TGC>TGT	p.C658C	ADAMTS17_uc002bvx.1_Silent_p.C415C	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	658	Cys-rich.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		CGTAGGGCCCGCAGGGTGTAC	0.617000													12	37					0	0	0.001855	0	0	
TSC2	7249	broad.mit.edu	37	16	2106669	2106669	+	Missense_Mutation	SNP	G	A	A	rs142919353		TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr16:2106669G>A	uc002con.2	+	8	779	c.673G>A	c.(673-675)GTG>ATG	p.V225M	TSC2_uc010bsd.2_Missense_Mutation_p.V225M|TSC2_uc002coo.2_Missense_Mutation_p.V225M|TSC2_uc010uvv.1_Missense_Mutation_p.V188M|TSC2_uc010uvw.1_Missense_Mutation_p.V176M|TSC2_uc002cop.2_Missense_Mutation_p.V25M	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	225	Required for interaction with TSC1.				cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				GCTGGACGCCGTGGTCTGCTA	0.637000			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				10	35					0	0	0.008291	0	0	
OR2C1	4993	broad.mit.edu	37	16	3406818	3406818	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr16:3406818G>A	uc002cuw.1	+	1	930	c.878G>A	c.(877-879)CGG>CAG	p.R293Q		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TACACGCTGCGGAACATGGAA	0.512000													17	29					0	0	0.004007	0	0	
C16orf62	57020	broad.mit.edu	37	16	19603148	19603148	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr16:19603148T>G	uc002dgn.1	+	8	688	c.676T>G	c.(676-678)TTC>GTC	p.F226V	C16orf62_uc002dgo.1_Missense_Mutation_p.F226V|C16orf62_uc002dgp.1_Intron|C16orf62_uc010vas.1_Missense_Mutation_p.F100V|C16orf62_uc002dgm.1_Missense_Mutation_p.F226V	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	226						integral to membrane				ovary(1)	1						TGTTATTCAGTTCTACCCAAG	0.378000													23	82					0	0	0.003954	0	0	
GPRC5B	51704	broad.mit.edu	37	16	19883494	19883494	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr16:19883494T>C	uc002dgt.2	-	2	782	c.674A>G	c.(673-675)AAG>AGG	p.K225R	GPRC5B_uc010vav.1_Missense_Mutation_p.K251R	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	225	Cytoplasmic (Potential).									lung(1)|breast(1)|skin(1)	3						CCTCTTGAACTTGCCGCACAG	0.582000													17	55					0	0	0.004007	0	0	
DCTN5	84516	broad.mit.edu	37	16	23678440	23678440	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr16:23678440A>C	uc002dly.1	+	6	581	c.524A>C	c.(523-525)AAG>ACG	p.K175T		NM_032486	NP_115875	Q9BTE1	DCTN5_HUMAN	dynactin 5	175						centrosome	transferase activity			upper_aerodigestive_tract(1)	1				GBM - Glioblastoma multiforme(48;0.0156)		TACTACCAGAAGTTTTTGCCC	0.522000													11	58					0	0	0.001855	0	0	
SEZ6L2	26470	broad.mit.edu	37	16	29897033	29897033	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr16:29897033C>T	uc002duq.3	-	8	1486	c.1246G>A	c.(1246-1248)GTG>ATG	p.V416M	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Missense_Mutation_p.V346M|SEZ6L2_uc002dur.3_Missense_Mutation_p.V346M|SEZ6L2_uc002dus.3_Missense_Mutation_p.V302M|SEZ6L2_uc010vec.1_Missense_Mutation_p.V416M|SEZ6L2_uc010ved.1_Missense_Mutation_p.V372M	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	416	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						TCATAGATCACGGGGGATAGG	0.612000													22	32					0	0	0.012319	0	0	
GABARAPL2	11345	broad.mit.edu	37	16	75602021	75602021	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr16:75602021G>A	uc002fen.2	+	3	313	c.177G>A	c.(175-177)CAG>CAA	p.Q59Q	GABARAPL2_uc010cgy.2_Intron	NM_007285	NP_009216	P60520	GBRL2_HUMAN	GABA(A) receptor-associated protein-like 2	59	Interaction with GABRG2 (Potential).				autophagy|intra-Golgi vesicle-mediated transport|positive regulation of ATPase activity|protein transport	autophagic vacuole membrane|cytosol|Golgi membrane|membrane fraction	ATPase binding|beta-tubulin binding|GABA receptor binding|microtubule binding|SNARE binding			ovary(1)	1						CTGTGGCTCAGTTCATGTGGA	0.453000													36	146					0	0	0.003271	0	0	
TP53	7157	broad.mit.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	T	T	rs28934576	by1000genomes	TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr17:7577120C>T	uc002gim.2	-	8	1012	c.818G>A	c.(817-819)CGT>CAT	p.R273H	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273H|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141H|TP53_uc010cng.1_Missense_Mutation_p.R141H|TP53_uc002gii.1_Missense_Mutation_p.R141H|TP53_uc010cnh.1_Missense_Mutation_p.R273H|TP53_uc010cni.1_Missense_Mutation_p.R273H|TP53_uc002gij.2_Missense_Mutation_p.R273H	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	273	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> S (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R273H(469)|p.R273C(394)|p.R273L(83)|p.R273P(24)|p.R273S(11)|p.R273G(9)|p.0?(7)|p.R273fs*72(3)|p.?(2)|p.R273fs*33(2)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.R273R(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGCACAAACACGCACCTCAAA	0.542000	R273H(NCIH1793_LUNG)|R273H(MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(PANC1_PANCREAS)|R273H(NCIH508_LARGE_INTESTINE)|R273H(NCIH1975_LUNG)|R273H(U251MG_CENTRAL_NERVOUS_SYSTEM)|R273H(SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273H(NCIH2405_LUNG)|R273H(HEC59_ENDOMETRIUM)|R273H(NCIH1155_LUNG)|R273H(HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(EN_ENDOMETRIUM)|R273H(SNB19_CENTRAL_NERVOUS_SYSTEM)|R273H(MDAMB468_BREAST)|R273H(SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(SW620_LARGE_INTESTINE)|R273H(SUIT2_PANCREAS)|R273H(SW480_LARGE_INTESTINE)|R273H(SKMEL30_SKIN)|R273H(OC314_OVARY)|R273H(HEC6_ENDOMETRIUM)|R273H(HT29_LARGE_INTESTINE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			13	8					0	0	0.013537	0	0	
DNAH2	146754	broad.mit.edu	37	17	7684068	7684068	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr17:7684068C>T	uc002giu.1	+	37	5985	c.5971C>T	c.(5971-5973)CGC>TGC	p.R1991C		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1991					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGGCAAGAAGCGCCGCCTACA	0.557000													23	54					0	0	0.014323	0	0	
MYH2	4620	broad.mit.edu	37	17	10428647	10428647	+	Missense_Mutation	SNP	G	A	A	rs138796340		TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr17:10428647G>A	uc010coi.2	-	33	4684	c.4556C>T	c.(4555-4557)ACG>ATG	p.T1519M	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.T1519M|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1519	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AATCTGTTCCGTGAGGTCAGA	0.383000													13	46					0	0	0.013537	0	0	
EFCAB5	374786	broad.mit.edu	37	17	28417521	28417521	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr17:28417521C>T	uc002het.2	+	20	3958	c.3766C>T	c.(3766-3768)CGT>TGT	p.R1256C	EFCAB5_uc010cse.2_Missense_Mutation_p.R1011C|EFCAB5_uc010csf.2_Intron	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	1256							calcium ion binding			ovary(1)|skin(1)	2						AGTTCCACTTCGTGAGAGAAC	0.393000													25	101					0	0	0.004656	0	0	
CCL8	6355	broad.mit.edu	37	17	32647919	32647919	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr17:32647919A>C	uc002hib.2	+	3	748	c.293A>C	c.(292-294)AAG>ACG	p.K98T		NM_005623	NP_005614	P80075	CCL8_HUMAN	small inducible cytokine A8 precursor	98					calcium ion transport|cell-cell signaling|chemotaxis|exocytosis|immune response|inflammatory response|response to virus	extracellular space	chemokine activity|heparin binding|signal transducer activity				0		Ovarian(249;0.0443)|Breast(31;0.151)				CAAAATCTGAAGCCATGAGCC	0.453000													9	20					0	0	0.006214	0	0	
SOCS7	30837	broad.mit.edu	37	17	36508871	36508871	+	Silent	SNP	G	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr17:36508871G>T	uc002hqa.2	+	1	867	c.744G>T	c.(742-744)CTG>CTT	p.L248L	SOCS7_uc010cvl.2_Silent_p.L248L|SOCS7_uc002hqb.2_RNA	NM_014598	NP_055413	O14512	SOCS7_HUMAN	suppressor of cytokine signaling 7	248	Mediates interaction with SORBS3.				intracellular signal transduction|negative regulation of signal transduction|regulation of growth	cytoplasm|nucleus|plasma membrane	protein binding|SH3 domain binding			skin(1)	1	Breast(7;3.47e-17)					CTGCGAGCCTGACAGACATGG	0.647000													4	23					1.23904e-05	1.26911e-05	0.000602	1	0	
KRTAP4-8	728224	broad.mit.edu	37	17	39254021	39254021	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr17:39254021C>T	uc010wfo.1	-	1	355	c.316G>A	c.(316-318)GTG>ATG	p.V106M		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	106	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|17.					keratin filament					0						cagctggacacacagcagctg	0.204000													3	22					0	0	0.004672	0	0	
ABCA8	10351	broad.mit.edu	37	17	66898948	66898948	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr17:66898948A>C	uc002jhp.2	-	19	2729	c.2550T>G	c.(2548-2550)AGT>AGG	p.S850R	ABCA8_uc002jhq.2_Missense_Mutation_p.S890R|ABCA8_uc010wqq.1_Missense_Mutation_p.S890R|ABCA8_uc010wqr.1_Missense_Mutation_p.S829R|ABCA8_uc002jhr.2_Missense_Mutation_p.S890R	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	850						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					CCCAGGTGTAACTGTTTTGAT	0.373000													14	61					0	0	0.001855	0	0	
KIAA0802	23255	broad.mit.edu	37	18	8783803	8783803	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr18:8783803G>A	uc002knr.2	+	6	835	c.693G>A	c.(691-693)GAG>GAA	p.E231E	KIAA0802_uc002knq.2_Silent_p.E231E|KIAA0802_uc010dkw.1_Silent_p.E69E	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	582	Potential.										0						TGGAGGTGGAGAACCGTGGCC	0.672000													5	22					0	0	0.000602	0	0	
ZNF521	25925	broad.mit.edu	37	18	22806982	22806982	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr18:22806982C>T	uc002kvk.2	-	4	1147	c.900G>A	c.(898-900)ATG>ATA	p.M300I	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.M300I|ZNF521_uc002kvl.2_Missense_Mutation_p.M80I	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	300	C2H2-type 7.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					GCACCTGCTCCATGTGGTTCA	0.552000			T	PAX5	ALL								5	60					0	0	0.000602	0	0	
SLC39A6	25800	broad.mit.edu	37	18	33706542	33706542	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr18:33706542T>G	uc010dmy.2	-	2	719	c.429A>C	c.(427-429)AAA>AAC	p.K143N	SLC39A6_uc002kzj.2_Intron	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	143	Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						GGCAAAGAGCTTTTCGCTTAT	0.303000													18	60					0	0	0.006122	0	0	
MC4R	4160	broad.mit.edu	37	18	58039273	58039273	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr18:58039273T>C	uc002lie.1	-	1	729	c.310A>G	c.(310-312)ATC>GTC	p.I104V		NM_005912	NP_005903	P32245	MC4R_HUMAN	melanocortin 4 receptor	104	Helical; Name=2; (Potential).				feeding behavior|G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of bone resorption|positive regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|ubiquitin protein ligase binding			lung(1)	1		Colorectal(73;0.0946)				AATAGGGTGATGACAATGGTT	0.423000													4	77					0	0	0.009096	0	0	
CDH7	1005	broad.mit.edu	37	18	63481784	63481784	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr18:63481784G>C	uc002ljz.2	+	4	894	c.569G>C	c.(568-570)AGA>ACA	p.R190T	CDH7_uc002lka.2_Missense_Mutation_p.R190T|CDH7_uc002lkb.2_Missense_Mutation_p.R190T	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	190	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				AACAGTGCCAGAGTGGTCTAC	0.428000													22	65					0	0	0.012319	0	0	
MADCAM1	8174	broad.mit.edu	37	19	501749	501749	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:501749G>A	uc002los.2	+	4	758	c.748G>A	c.(748-750)GAC>AAC	p.D250N	MADCAM1_uc002lot.2_Intron|MADCAM1_uc010drq.2_Intron	NM_130760	NP_570116	Q13477	MADCA_HUMAN	mucosal vascular addressin cell adhesion	250	Mucin-like.|Extracellular (Potential).|5.5 X 8 AA tandem repeats of [PS]-P-D-T- T-S-[QP]-E.|4.				cell adhesion|immune response|regulation of immune response|signal transduction	integral to membrane|membrane fraction|plasma membrane					0		all_cancers(10;4.25e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAGTCTCCCGACACCACCTC	0.706000													3	16					0	0	0.000602	0	0	
MUC16	94025	broad.mit.edu	37	19	9058990	9058990	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:9058990T>G	uc002mkp.2	-	3	28660	c.28456A>C	c.(28456-28458)ACC>CCC	p.T9486P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9488	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTGAAGTGGTCTCAGGTTCC	0.478000													27	136					0	0	0.008361	0	0	
ZNF317	57693	broad.mit.edu	37	19	9271459	9271459	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:9271459C>T	uc002mku.2	+	7	1413	c.1138C>T	c.(1138-1140)CAC>TAC	p.H380Y	ZNF317_uc002mkv.2_Missense_Mutation_p.H239Y|ZNF317_uc002mkw.2_Missense_Mutation_p.H348Y|ZNF317_uc002mkx.2_Missense_Mutation_p.H295Y|ZNF317_uc002mky.2_Missense_Mutation_p.H263Y	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	380	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTTAATTTGCACAAGAAGAA	0.522000													13	22					0	0	0.003163	0	0	
MAST1	22983	broad.mit.edu	37	19	12969369	12969369	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:12969369C>T	uc002mvm.2	+	12	1310	c.1182C>T	c.(1180-1182)CGC>CGT	p.R394R	MAST1_uc002mvk.2_Silent_p.R390R	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	394	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						TGCGGCACCGCGACACGCGGC	0.647000													7	37					0	0	0.003080	0	0	
CALR	811	broad.mit.edu	37	19	13051267	13051267	+	Splice_Site	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:13051267G>A	uc002mvu.2	+	5	782	c.702_splice	c.e5+1	p.E234_splice		NM_004343	NP_004334	P27797	CALR_HUMAN	calreticulin precursor						cell cycle arrest|cellular senescence|glucocorticoid receptor signaling pathway|negative regulation of neuron differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of steroid hormone receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of translation|peptide antigen assembly with MHC class I protein complex|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of phagocytosis|post-translational protein modification|protein export from nucleus|protein maturation by protein folding|protein N-linked glycosylation via asparagine|protein stabilization|regulation of apoptosis|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|extracellular space|MHC class I peptide loading complex|nucleus|perinuclear region of cytoplasm|polysome|proteinaceous extracellular matrix	androgen receptor binding|calcium ion binding|chaperone binding|complement component C1q binding|DNA binding|integrin binding|mRNA binding|protein binding involved in protein folding|sugar binding|ubiquitin protein ligase binding|unfolded protein binding|zinc ion binding			ovary(1)	1					Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAAGCCTGAGGTTGGTGTTTG	0.552000													11	26					0	0	0.010729	0	0	
OR7A17	26333	broad.mit.edu	37	19	14991857	14991857	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:14991857A>T	uc010xob.1	-	1	311	c.311T>A	c.(310-312)TTT>TAT	p.F104Y		NM_030901	NP_112163	O14581	OR7AH_HUMAN	olfactory receptor, family 7, subfamily A,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					AAAAAGTACAAAAAAGCACAT	0.463000													16	59					0	0	0.004990	0	0	
TM6SF2	53345	broad.mit.edu	37	19	19381881	19381881	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:19381881G>A	uc002nmd.1	-	2	199	c.149C>T	c.(148-150)GCG>GTG	p.A50V	HAPLN4_uc002nmc.2_5'UTR	NM_001001524	NP_001001524	Q9BZW4	TM6S2_HUMAN	transmembrane 6 superfamily member 2	50	Helical; (Potential).					integral to membrane					0			Epithelial(12;0.0151)			GCTGTAGACCGCCACGAAAAG	0.607000													19	56					0	0	0.007413	0	0	
ZNF43	7594	broad.mit.edu	37	19	21992308	21992308	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:21992308T>A	uc002nqj.2	-	4	661	c.531A>T	c.(529-531)AAA>AAT	p.K177N	ZNF43_uc010ecv.2_Missense_Mutation_p.K171N|ZNF43_uc002nql.2_Missense_Mutation_p.K171N|ZNF43_uc002nqm.2_Missense_Mutation_p.K171N|ZNF43_uc002nqk.2_Missense_Mutation_p.K107N	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	177	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TGCCACATTCTTTGCATTTGA	0.289000													7	25					0	0	0.001984	0	0	
ZNF99	7652	broad.mit.edu	37	19	22951153	22951153	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:22951153T>C	uc010xrh.1	-	3	243	c.243A>G	c.(241-243)AAA>AAG	p.K81K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCCAAGGCTCTTTCCCTTGCT	0.368000													7	23					0	0	0.004482	0	0	
TSHZ3	57616	broad.mit.edu	37	19	31769734	31769734	+	Missense_Mutation	SNP	T	A	A	rs146913156		TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:31769734T>A	uc002nsy.3	-	2	1030	c.965A>T	c.(964-966)AAG>ATG	p.K322M		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	322					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					GGAAGCTTTCTTCCGAGTGGC	0.522000													11	111					0	0	0.001855	0	0	
MLL4	9757	broad.mit.edu	37	19	36218419	36218419	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:36218419C>T	uc010eei.2	+	17	4198	c.4198C>T	c.(4198-4200)CGC>TGC	p.R1400C		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1400					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCGCAGCCCCGCTGGCGAGA	0.667000													23	126					0	0	0.012319	0	0	
EGLN2	112398	broad.mit.edu	37	19	41307126	41307126	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:41307126G>A	uc010ehd.2	+	8	1650	c.649G>A	c.(649-651)GGG>AGG	p.G217R	EGLN2_uc002opg.3_Missense_Mutation_p.G217R|EGLN2_uc002oph.2_Missense_Mutation_p.G217R|EGLN2_uc002opi.2_Missense_Mutation_p.G217R	NM_080732	NP_542770	Q96KS0	EGLN2_HUMAN	EGL nine (C.elegans) homolog 2	217					cell redox homeostasis|estrogen receptor signaling pathway|positive regulation of protein catabolic process|regulation of cell growth|response to hypoxia	cytoplasm|nucleus	ferrous iron binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|oxygen sensor activity			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Vitamin C(DB00126)	CAAACGGGGTGGGCGCCTGCG	0.687000													44	79					0	0	0.008740	0	0	
PSG2	5670	broad.mit.edu	37	19	43570731	43570731	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:43570731A>G	uc002ovr.2	-	5	1079	c.986T>C	c.(985-987)CTT>CCT	p.L329P	PSG10_uc002ouv.1_RNA|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.L329P|PSG2_uc010eiq.1_Intron|PSG2_uc002ovs.3_Missense_Mutation_p.L329P|PSG2_uc002ovt.3_Missense_Mutation_p.L329P	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	329					cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				AAGGAGAGGAAGAAGTCCTAT	0.418000													21	127					0	0	0.010504	0	0	
ZNF404	342908	broad.mit.edu	37	19	44377328	44377328	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:44377328C>A	uc002oxs.3	-	2	1038	c.1029G>T	c.(1027-1029)AAG>AAT	p.K343N		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	346	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TATGAATTCTCTTATGTTTAA	0.393000													13	87					1.36491e-13	1.42926e-13	0.001855	1	0	
ZNF285	26974	broad.mit.edu	37	19	44891483	44891483	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:44891483T>G	uc002ozd.3	-	4	1011	c.924A>C	c.(922-924)AAA>AAC	p.K308N	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.K315N	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	308					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						CTGAGGAGACTTTCTGATATC	0.483000													25	169					0	0	0.003330	0	0	
PRKD2	25865	broad.mit.edu	37	19	47192802	47192802	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:47192802T>C	uc002pfh.2	-	15	2305	c.1963A>G	c.(1963-1965)ATC>GTC	p.I655V	PRKD2_uc002pfd.2_Missense_Mutation_p.I29V|PRKD2_uc010eks.2_Missense_Mutation_p.I58V|PRKD2_uc010ekt.2_5'UTR|PRKD2_uc002pfe.2_Missense_Mutation_p.I175V|PRKD2_uc002pff.2_Missense_Mutation_p.I175V|PRKD2_uc002pfg.2_Missense_Mutation_p.I498V|PRKD2_uc002pfi.2_Missense_Mutation_p.I655V|PRKD2_uc002pfj.2_Missense_Mutation_p.I655V|PRKD2_uc010xye.1_Missense_Mutation_p.I655V|PRKD2_uc002pfk.2_Missense_Mutation_p.I498V	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	655	Protein kinase.				cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		ACCTGGGTGATGAGGAACTTG	0.607000													12	21					0	0	0.010729	0	0	
FKRP	79147	broad.mit.edu	37	19	47259669	47259669	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:47259669C>T	uc002pfn.2	+	4	1259	c.962C>T	c.(961-963)GCG>GTG	p.A321V	FKRP_uc002pfp.2_Missense_Mutation_p.A321V	NM_024301	NP_077277	Q9H9S5	FKRP_HUMAN	fukutin-related protein	321						extracellular space|Golgi apparatus|rough endoplasmic reticulum|sarcolemma	transferase activity			pancreas(1)	1		all_epithelial(76;5.08e-05)|Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000541)|all cancers(93;0.00128)|Epithelial(262;0.0207)|GBM - Glioblastoma multiforme(486;0.0336)		TGCCTGCGCGCGCTGCGCGAG	0.741000													3	9					0	0	0.009096	0	0	
NPAS1	4861	broad.mit.edu	37	19	47542709	47542709	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:47542709T>C	uc002pfw.2	+	8	1045	c.849T>C	c.(847-849)CTT>CTC	p.L283L	NPAS1_uc002pfx.2_Silent_p.L108L|NPAS1_uc002pfy.2_Silent_p.L283L|NPAS1_uc010xyj.1_Silent_p.L107L	NM_002517	NP_002508	Q99742	NPAS1_HUMAN	neuronal PAS domain protein 1	283					central nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0		all_cancers(25;4.31e-08)|all_epithelial(76;2.96e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.102)		all cancers(93;6.02e-05)|OV - Ovarian serous cystadenocarcinoma(262;7.35e-05)|Epithelial(262;0.00389)|GBM - Glioblastoma multiforme(486;0.0252)		CCCTGGGCCTTGTGGCCCTCG	0.677000													10	51					0	0	0.008291	0	0	
SIGLEC16	400709	broad.mit.edu	37	19	50473221	50473221	+	RNA	SNP	T	C	C	rs117072442	by1000genomes	TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:50473221T>C	uc002prf.2	+	2		c.240T>C			SIGLEC16_uc010ybj.1_5'Flank|uc010ybk.1_5'Flank	NR_002825				Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.												0						GTTCAAAGGATGGACCAGCCC	0.602000													5	48					0	0	0.000602	0	0	
ZNF613	79898	broad.mit.edu	37	19	52448445	52448445	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:52448445T>G	uc002pxz.1	+	6	1732	c.1309T>G	c.(1309-1311)TTC>GTC	p.F437V	ZNF613_uc002pya.1_Missense_Mutation_p.F401V	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	437	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		TGGGAAAGGCTTCAGCCAGAA	0.438000													11	70					0	0	0.008291	0	0	
LILRA4	23547	broad.mit.edu	37	19	54849465	54849465	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr19:54849465C>T	uc002qfj.2	-	4	454	c.397G>A	c.(397-399)GTG>ATG	p.V133M	LILRA4_uc002qfi.2_Missense_Mutation_p.V67M	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	133	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CCTGAGGTCACCACAGGGCTT	0.582000													11	63					0	0	0.001855	0	0	
PXDN	7837	broad.mit.edu	37	2	1647273	1647273	+	Silent	SNP	G	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:1647273G>T	uc002qxa.2	-	19	3883	c.3819C>A	c.(3817-3819)ATC>ATA	p.I1273I		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1273					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TGTCGCATAGGATCCTGGCCA	0.612000													9	65					5.68852e-11	5.89818e-11	0.004482	1	0	
PXDN	7837	broad.mit.edu	37	2	1652724	1652724	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:1652724C>T	uc002qxa.2	-	17	2892	c.2828G>A	c.(2827-2829)CGG>CAG	p.R943Q		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	943					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CTTCCCGGACCGCTGCACGAT	0.711000													3	27					0	0	0.004672	0	0	
COLEC11	78989	broad.mit.edu	37	2	3691528	3691528	+	Silent	SNP	C	T	T	rs141570591	by1000genomes	TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:3691528C>T	uc002qya.2	+	7	784	c.636C>T	c.(634-636)GGC>GGT	p.G212G	COLEC11_uc002qxz.2_Silent_p.G209G|COLEC11_uc002qyb.2_Silent_p.G188G|COLEC11_uc002qyc.2_Silent_p.G188G|COLEC11_uc010ewo.2_Silent_p.G164G|COLEC11_uc010ewp.2_Silent_p.G186G|COLEC11_uc010ewq.2_Silent_p.G162G|COLEC11_uc010ewr.2_Silent_p.G162G|COLEC11_uc010ews.2_Silent_p.G138G	NM_024027	NP_076932	Q9BWP8	COL11_HUMAN	collectin sub-family member 11 isoform a	212	C-type lectin.					collagen	mannose binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.127)		AGAAGGAGGGCGCCTTCGTGT	0.632000													11	21					0	0	0.008291	0	0	
NT5C1B	93034	broad.mit.edu	37	2	18765460	18765460	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:18765460T>C	uc002rcz.2	-	6	1069	c.965A>G	c.(964-966)GAC>GGC	p.D322G	NT5C1B_uc002rcy.2_Missense_Mutation_p.D322G|NT5C1B_uc010exr.2_Missense_Mutation_p.D264G|NT5C1B_uc010yju.1_Missense_Mutation_p.D262G|NT5C1B_uc002rda.2_Missense_Mutation_p.D262G|NT5C1B_uc010yjv.1_Missense_Mutation_p.D339G|NT5C1B_uc010yjw.1_Missense_Mutation_p.D305G|NT5C1B_uc010exs.2_Missense_Mutation_p.D324G|NT5C1B_uc002rdb.1_Missense_Mutation_p.D114G	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	322					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TTTCCTGCCGTCCACCATGTT	0.557000													23	110					0	0	0.003954	0	0	
APOB	338	broad.mit.edu	37	2	21256384	21256384	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:21256384T>C	uc002red.2	-	9	1039	c.911A>G	c.(910-912)AAG>AGG	p.K304R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	304	Vitellogenin.|Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GCCCATCTTCTTAGTACCTGG	0.443000													20	113					0	0	0.012319	0	0	
ITSN2	50618	broad.mit.edu	37	2	24507636	24507636	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:24507636A>C	uc002rfe.2	-	17	2198	c.1940T>G	c.(1939-1941)CTT>CGT	p.L647R	ITSN2_uc002rff.2_Intron|ITSN2_uc002rfg.2_Missense_Mutation_p.L647R	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	647	Potential.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AATAACCTTAAGTAAGAGGAA	0.338000													28	93					0	0	0.006320	0	0	
PRKD3	23683	broad.mit.edu	37	2	37483980	37483980	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:37483980T>G	uc002rqd.2	-	16	2793	c.2238A>C	c.(2236-2238)GAA>GAC	p.E746D	PRKD3_uc002rqe.1_Missense_Mutation_p.E346D	NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	746	Protein kinase.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				TCCGGAGAACTTCAGGGGCTA	0.458000													32	105					0	0	0.008361	0	0	
FSHR	2492	broad.mit.edu	37	2	49190889	49190889	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:49190889T>C	uc002rww.2	-	10	1145	c.1071A>G	c.(1069-1071)GAA>GAG	p.E357E	FSHR_uc002rwx.2_Silent_p.E295E|FSHR_uc010fbn.2_Silent_p.E331E	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	357	Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	CCATGATATCTTCACATGGGT	0.463000									Gonadal_Dysgenesis_46_XX				25	89					0	0	0.003954	0	0	
ATP6V1B1	525	broad.mit.edu	37	2	71192185	71192185	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:71192185C>T	uc002shj.2	+	14	1563	c.1476C>T	c.(1474-1476)GCC>GCT	p.A492A	ATP6V1B1_uc010fdv.2_Silent_p.A475A|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Silent_p.A450A	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	492					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						TTCCGCAGGCCGTGATCGACG	0.672000											OREG0014686	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	73					0	0	0.002450	0	0	
ALMS1	7840	broad.mit.edu	37	2	73835667	73835667	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:73835667A>C	uc002sje.1	+	24	12542	c.12431A>C	c.(12430-12432)AAG>ACG	p.K4144T	ALMS1_uc002sjf.1_Missense_Mutation_p.K4100T	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	4142					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TCAGAATATAAGTCATACCGG	0.428000													17	50					0	0	0.006122	0	0	
Unknown	0	broad.mit.edu	37	2	90249247	90249247	+	RNA	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:90249247T>C	uc010fhm.2	+	28		c.3790T>C								Parts of antibodies, mostly variable regions.																		GCCCCTAAGCTCTTCATCTAT	0.507000													33	186					0	0	0.012213	0	0	
FER1L5	90342	broad.mit.edu	37	2	97370410	97370410	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:97370410T>G	uc010fia.2	+	52	6263	c.6263T>G	c.(6262-6264)CTT>CGT	p.L2088R	FER1L5_uc002sws.3_Missense_Mutation_p.L797R|FER1L5_uc002swt.3_Missense_Mutation_p.L797R|FER1L5_uc010yus.1_Missense_Mutation_p.L796R	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	2088						integral to membrane				ovary(1)	1						TTCCCAGAACTTCCAGCCCCA	0.507000													7	139					0	0	0.001984	0	0	
CNGA3	1261	broad.mit.edu	37	2	99013210	99013210	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:99013210A>C	uc002syt.2	+	8	1994	c.1577A>C	c.(1576-1578)AAG>ACG	p.K526T	CNGA3_uc002syu.2_Missense_Mutation_p.K508T|CNGA3_uc010fij.2_Missense_Mutation_p.K530T	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	526	cGMP.				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						AACGAGGGCAAGCTGGCCGTG	0.552000													15	171					0	0	0.003163	0	0	
AFF3	3899	broad.mit.edu	37	2	100203726	100203726	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:100203726G>A	uc002tag.2	-	15	2717	c.2481C>T	c.(2479-2481)GAC>GAT	p.D827D	AFF3_uc002taf.2_Silent_p.D852D|AFF3_uc010fiq.1_Silent_p.D827D|AFF3_uc010yvr.1_Silent_p.D980D|AFF3_uc002tah.1_Silent_p.D852D	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	827					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CCCTGTAGTCGTCTTCGTTGT	0.473000													23	234					0	0	0.002780	0	0	
IL1F5	26525	broad.mit.edu	37	2	113820164	113820164	+	Silent	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:113820164A>G	uc002tis.2	+	5	511	c.378A>G	c.(376-378)GAA>GAG	p.E126E	IL1F5_uc002tit.2_Silent_p.E126E	NM_173170	NP_775262	Q9UBH0	I36RA_HUMAN	interleukin 1 family, member 5	126						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						CGGTGCCTGAAGCCGATCAGC	0.602000													8	59					0	0	0.003080	0	0	
ZEB2	9839	broad.mit.edu	37	2	145157299	145157299	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:145157299C>G	uc002tvu.2	-	8	1935	c.1455G>C	c.(1453-1455)AAG>AAC	p.K485N	ZEB2_uc002tvv.2_Missense_Mutation_p.K479N|ZEB2_uc010zbm.1_Missense_Mutation_p.K456N|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.K514N	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	485	SMAD-MH2 binding domain (By similarity).					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		AACCTTTCAACTTTGAAATTT	0.408000													12	69					0	0	0.001855	0	0	
ZEB2	9839	broad.mit.edu	37	2	145157311	145157311	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:145157311T>C	uc002tvu.2	-	8	1923	c.1443A>G	c.(1441-1443)GAA>GAG	p.E481E	ZEB2_uc002tvv.2_Silent_p.E475E|ZEB2_uc010zbm.1_Silent_p.E452E|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Silent_p.E510E	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	481	SMAD-MH2 binding domain (By similarity).					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		TTGAAATTTCTTCAGCCTTGC	0.418000													17	70					0	0	0.007413	0	0	
NEB	4703	broad.mit.edu	37	2	152470950	152470950	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:152470950T>A	uc010fnx.2	-	73	10903	c.10712A>T	c.(10711-10713)AAG>ATG	p.K3571M		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3571					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GCTGCTGAACTTGGTCTTCCA	0.517000													70	231					0	0	0.014410	0	0	
GALNT13	114805	broad.mit.edu	37	2	155295112	155295112	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:155295112T>G	uc002tyr.3	+	12	1971	c.1404T>G	c.(1402-1404)TCT>TCG	p.S468S	GALNT13_uc002tyt.3_Silent_p.S468S|GALNT13_uc010fod.2_Intron|uc002tyu.1_Intron	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	468	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding	p.S468Y(1)		ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						AGGTATTTTCTTACACTGCTG	0.313000													19	70					0	0	0.008871	0	0	
KCNH7	90134	broad.mit.edu	37	2	163693107	163693107	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:163693107C>A	uc002uch.1	-	2	459	c.247G>T	c.(247-249)GCC>TCC	p.A83S	KCNH7_uc002uci.2_Missense_Mutation_p.A83S	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	83	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AATGCCTGGGCAATTTGGGCA	0.468000													16	47					3.52763e-06	3.63088e-06	0.004990	1	0	
PHOSPHO2	493911	broad.mit.edu	37	2	170557595	170557595	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:170557595T>G	uc002ufg.2	+	4	502	c.114T>G	c.(112-114)TCT>TCG	p.S38S	KLHL23_uc002ufh.1_Intron	NM_001008489	NP_001008489	Q8TCD6	PHOP2_HUMAN	phosphatase, orphan 2	38							metal ion binding|pyridoxal phosphatase activity			skin(1)	1						TACGTGATTCTTATCGAAAAG	0.353000													16	85					0	0	0.004007	0	0	
HOXD10	3236	broad.mit.edu	37	2	176983956	176983956	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:176983956T>G	uc002ukj.2	+	2	1090	c.1020T>G	c.(1018-1020)TCT>TCG	p.S340S		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	340						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		TCACGTTTTCTTAggtctgag	0.448000													10	15					0	0	0.008291	0	0	
ITGAV	3685	broad.mit.edu	37	2	187521058	187521058	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:187521058G>A	uc002upq.2	+	17	1925	c.1649G>A	c.(1648-1650)AGT>AAT	p.S550N	ITGAV_uc010frs.2_Missense_Mutation_p.S514N|ITGAV_uc010zfv.1_Missense_Mutation_p.S504N	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	550	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		AGGTCCCCAAGTCACTCCAAG	0.453000													28	115					0	0	0.008361	0	0	
MFSD6	54842	broad.mit.edu	37	2	191301390	191301390	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:191301390T>G	uc002urz.2	+	3	959	c.635T>G	c.(634-636)GTT>GGT	p.V212G		NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	212					transmembrane transport	integral to membrane				ovary(2)	2						TCAGACACCGTTACTTTGCCA	0.438000													12	65					0	0	0.013537	0	0	
ALS2CR4	65062	broad.mit.edu	37	2	202489002	202489002	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:202489002C>G	uc002uyh.1	-	14	1304	c.1203G>C	c.(1201-1203)GAG>GAC	p.E401D	ALS2CR4_uc002uyg.1_Missense_Mutation_p.E393D|ALS2CR4_uc010zho.1_Missense_Mutation_p.E196D	NM_001044385	NP_001037850	Q96Q45	TM237_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	425						integral to membrane	protein binding				0						TGATTTCTTTCTCTTTATCAG	0.343000													12	47					0	0	0.001855	0	0	
DYTN	391475	broad.mit.edu	37	2	207527659	207527659	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:207527659A>G	uc002vbr.1	-	11	1718	c.1601T>C	c.(1600-1602)CTT>CCT	p.L534P		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	534	Potential.					plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		GGCATCCATAAGTTTTGACAA	0.438000													47	173					0	0	0.014410	0	0	
KIAA1486	57624	broad.mit.edu	37	2	226446694	226446694	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:226446694C>T	uc002voe.2	+	4	736	c.561C>T	c.(559-561)TCC>TCT	p.S187S	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	187										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		ATGAATATTCCAAGAAGATTC	0.423000													8	182					0	0	0.006214	0	0	
COL6A3	1293	broad.mit.edu	37	2	238283329	238283329	+	Silent	SNP	C	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:238283329C>G	uc002vwl.2	-	8	3690	c.3405G>C	c.(3403-3405)CTG>CTC	p.L1135L	COL6A3_uc002vwo.2_Silent_p.L929L|COL6A3_uc010znj.1_Silent_p.L528L|COL6A3_uc002vwq.2_Silent_p.L929L|COL6A3_uc002vwr.2_Silent_p.L728L	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1135	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGACGATCAGCAGCTGGGGCA	0.642000													7	61					0	0	0.001984	0	0	
SNED1	25992	broad.mit.edu	37	2	241969917	241969917	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr2:241969917T>G	uc002wah.1	+	2	430	c.430T>G	c.(430-432)TTC>GTC	p.F144V		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	144	NIDO.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		GCTCCTGGACTTCAATGCCAC	0.632000													5	33					0	0	0.000602	0	0	
VPS16	64601	broad.mit.edu	37	20	2845684	2845684	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:2845684A>C	uc002whe.2	+	20	2035	c.1987A>C	c.(1987-1989)AAT>CAT	p.N663H	VPS16_uc002whh.2_RNA|PTPRA_uc002whj.2_5'UTR|VPS16_uc002whf.2_Missense_Mutation_p.N519H|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Missense_Mutation_p.N349H|VPS16_uc002whi.2_Missense_Mutation_p.N147H	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	663					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						CAAGGCCAAGAATGAGTTTGC	0.542000													16	129					0	0	0.008871	0	0	
HAO1	54363	broad.mit.edu	37	20	7920962	7920962	+	Silent	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:7920962A>G	uc002wmw.1	-	1	132	c.108T>C	c.(106-108)ACT>ACC	p.T36T	HAO1_uc010gbu.2_Silent_p.T36T	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	36	FMN hydroxy acid dehydrogenase.				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						TATCAGCCAAAGTTTCTTCAT	0.318000													12	75					0	0	0.013537	0	0	
NINL	22981	broad.mit.edu	37	20	25459831	25459831	+	Silent	SNP	G	A	A	rs148406486	by1000genomes	TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:25459831G>A	uc002wux.1	-	16	2003	c.1929C>T	c.(1927-1929)TAC>TAT	p.Y643Y	NINL_uc010gdn.1_Silent_p.Y643Y|NINL_uc010gdo.1_Silent_p.Y426Y	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	643	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TTTCCCTTTCGTAGTAATTTA	0.527000													19	143					0	0	0.010504	0	0	
DNMT3B	1789	broad.mit.edu	37	20	31386384	31386384	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:31386384C>T	uc002wyc.2	+	15	1930	c.1609C>T	c.(1609-1611)CGG>TGG	p.R537W	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Missense_Mutation_p.R517W|DNMT3B_uc002wye.2_Missense_Mutation_p.R517W|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.R475W|DNMT3B_uc010zua.1_Missense_Mutation_p.R441W|DNMT3B_uc002wyf.2_Missense_Mutation_p.R529W|DNMT3B_uc002wyg.2_Missense_Mutation_p.R236W|DNMT3B_uc010geg.2_5'Flank|DNMT3B_uc010geh.2_5'Flank	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	537	ADD.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						TGGCGTCCTGCGGCGCCGGAA	0.637000													23	77					0	0	0.003330	0	0	
BPIL1	80341	broad.mit.edu	37	20	31601629	31601629	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:31601629C>T	uc002wyj.2	+	5	516	c.322C>T	c.(322-324)CTG>TTG	p.L108L		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	108						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						CCCAGAGCCCCTGGAGCTGAC	0.612000													6	80					0	0	0.001168	0	0	
RPN2	6185	broad.mit.edu	37	20	35862467	35862467	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:35862467T>C	uc002xgp.2	+	15	2026	c.1722T>C	c.(1720-1722)CCT>CCC	p.P574P	RPN2_uc002xgq.2_Silent_p.P542P	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	574	Helical; (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CTTTTGCTCCTAGCACGATTA	0.458000													4	76					0	0	0.000602	0	0	
SLC32A1	140679	broad.mit.edu	37	20	37357171	37357171	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:37357171A>C	uc002xjc.2	+	2	1730	c.1467A>C	c.(1465-1467)CAA>CAC	p.Q489H		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	489	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	TGTGGCACCAAGTCTTCTTCG	0.642000													5	48					0	0	0.000602	0	0	
DDX27	55661	broad.mit.edu	37	20	47851592	47851592	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:47851592A>C	uc002xuh.2	+	12	1548	c.1487A>C	c.(1486-1488)AAC>ACC	p.N496T		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	496	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CTCCATGGCAACTTGTCACAG	0.597000													10	61					0	0	0.008291	0	0	
KCNG1	3755	broad.mit.edu	37	20	49620993	49620993	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:49620993G>A	uc002xwa.3	-	3	1420	c.1125C>T	c.(1123-1125)CGC>CGT	p.R375R		NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	375	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GCCCGAACTCGCGGGTGCAGC	0.701000													7	15					0	0	0.001984	0	0	
SALL4	57167	broad.mit.edu	37	20	50406871	50406871	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:50406871C>T	uc002xwh.3	-	2	2252	c.2151G>A	c.(2149-2151)TCG>TCA	p.S717S	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	717					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TGGGTGATGCCGAGTGGATGC	0.577000													18	47					0	0	0.007413	0	0	
ARFGAP1	55738	broad.mit.edu	37	20	61910326	61910326	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr20:61910326C>T	uc002yem.2	+	7	718	c.606C>T	c.(604-606)AAC>AAT	p.N202N	ARFGAP1_uc011aas.1_Silent_p.N149N|ARFGAP1_uc011aat.1_Silent_p.N89N|ARFGAP1_uc002yel.2_Silent_p.N202N|ARFGAP1_uc002yen.2_Silent_p.N202N	NM_018209	NP_060679	Q8N6T3	ARFG1_HUMAN	ADP-ribosylation factor GTPase activating	202					COPI coating of Golgi vesicle|protein transport|regulation of ARF GTPase activity|retrograde vesicle-mediated transport, Golgi to ER	cytosol|Golgi-associated vesicle membrane	ARF GTPase activator activity|zinc ion binding			pancreas(1)	1	all_cancers(38;1.59e-09)					TCCTCAACAACGCCATGTCCT	0.607000													16	43					0	0	0.008871	0	0	
TPTE	7179	broad.mit.edu	37	21	10906985	10906985	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr21:10906985T>G	uc002yip.1	-	24	1944	c.1576A>C	c.(1576-1578)ATT>CTT	p.I526L	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.I508L|TPTE_uc002yir.1_Missense_Mutation_p.I488L|TPTE_uc010gkv.1_Missense_Mutation_p.I388L	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	526	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GATGGATAAATTCTCCGTGCT	0.363000													7	70					0	0	0.001984	0	0	
TIAM1	7074	broad.mit.edu	37	21	32554938	32554938	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr21:32554938A>G	uc002yow.1	-	16	3159	c.2687T>C	c.(2686-2688)CTT>CCT	p.L896P	TIAM1_uc011adk.1_Missense_Mutation_p.L896P|TIAM1_uc011adl.1_Missense_Mutation_p.L836P	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	896	PDZ.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ATTGATCTCAAGAATCTCATC	0.473000													5	46					0	0	0.001984	0	0	
ADRBK2	157	broad.mit.edu	37	22	26110408	26110408	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr22:26110408T>G	uc003abx.3	+	18	1672	c.1525T>G	c.(1525-1527)TTC>GTC	p.F509V	ADRBK2_uc003abw.2_Missense_Mutation_p.F396V|ADRBK2_uc003aby.3_RNA	NM_005160	NP_005151	P35626	ARBK2_HUMAN	beta-adrenergic receptor kinase 2	509	AGC-kinase C-terminal.						ATP binding|beta-adrenergic receptor kinase activity|signal transducer activity			lung(3)|ovary(2)|stomach(1)|central_nervous_system(1)	7					Adenosine triphosphate(DB00171)	CTACAAGAACTTCCCTTTGGT	0.408000													16	56					0	0	0.010504	0	0	
CRYBA4	1413	broad.mit.edu	37	22	27024279	27024279	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr22:27024279T>G	uc003acz.3	+	5	363	c.328T>G	c.(328-330)TTC>GTC	p.F110V		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	110	Beta/gamma crystallin 'Greek key' 3.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						GCTGACAATCTTCGAGCAAGA	0.562000													18	81					0	0	0.008871	0	0	
SYNGR1	9145	broad.mit.edu	37	22	39772142	39772142	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr22:39772142C>T	uc003axq.3	+	3	485	c.423C>T	c.(421-423)AAC>AAT	p.N141N	SYNGR1_uc003axo.3_Silent_p.N141N|SYNGR1_uc003axp.3_Nonsense_Mutation_p.R108*|TAB1_uc003axr.2_Silent_p.N67N|SYNGR1_uc003axs.3_Silent_p.N142N	NM_004711	NP_004702	O43759	SNG1_HUMAN	synaptogyrin 1 isoform 1a	141	MARVEL.				regulation of long-term neuronal synaptic plasticity|regulation of short-term neuronal synaptic plasticity	cell junction|integral to plasma membrane|melanosome					0	Melanoma(58;0.04)					ACCCACTGAACGAAGGGACGG	0.632000													19	85					0	0	0.008871	0	0	
EFCAB6	64800	broad.mit.edu	37	22	44062988	44062988	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr22:44062988T>G	uc003bdy.1	-	17	2194	c.1979A>C	c.(1978-1980)AAG>ACG	p.K660T	EFCAB6_uc003bdz.1_Missense_Mutation_p.K508T|EFCAB6_uc010gzi.1_Missense_Mutation_p.K508T|EFCAB6_uc010gzj.1_5'UTR|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	660	EF-hand 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TCCTACCTTCTTAAAGTCATG	0.388000													16	45					0	0	0.006122	0	0	
FBLN2	2199	broad.mit.edu	37	3	13655628	13655628	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:13655628C>T	uc011avb.1	+	5	1818	c.1693C>T	c.(1693-1695)CGC>TGC	p.R565C	FBLN2_uc011auz.1_Missense_Mutation_p.R591C|FBLN2_uc011ava.1_Missense_Mutation_p.R565C|FBLN2_uc011avc.1_Missense_Mutation_p.R565C|uc003byc.1_5'Flank	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	565						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			ACCTGAGGTTCGCCGACCTCC	0.597000													10	36					0	0	0.008291	0	0	
TBC1D5	9779	broad.mit.edu	37	3	17279755	17279755	+	Silent	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:17279755A>G	uc003cbf.2	-	17	3153	c.1488T>C	c.(1486-1488)CCT>CCC	p.P496P	TBC1D5_uc010heu.2_Silent_p.P83P|TBC1D5_uc010hev.2_Silent_p.P496P|TBC1D5_uc003cbe.2_Silent_p.P496P|TBC1D5_uc010hew.1_Silent_p.P448P	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	496						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						AGGTCCTGGTAGGAATTACAA	0.517000													7	33					0	0	0.001984	0	0	
CYP8B1	1582	broad.mit.edu	37	3	42916035	42916035	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:42916035T>G	uc003cmh.2	-	1	1599	c.1274A>C	c.(1273-1275)AAG>ACG	p.K425T	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.K425T	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	425					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		GTGGTGGATCTTCTTGCCTGT	0.542000													26	87					0	0	0.010818	0	0	
RBM5	10181	broad.mit.edu	37	3	50153411	50153411	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:50153411G>A	uc003cyg.2	+	22	2240	c.2092G>A	c.(2092-2094)GAG>AAG	p.E698K	RBM5_uc011bdj.1_Missense_Mutation_p.E642K|RBM5_uc011bdk.1_Missense_Mutation_p.E526K|RBM5_uc003cyh.2_Missense_Mutation_p.E155K	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	698	Required for interaction with U2AF2.				apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AAGGGAGAGAGAGGTGAATGG	0.468000													11	44					0	0	0.013537	0	0	
WNT5A	7474	broad.mit.edu	37	3	55504415	55504415	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:55504415T>C	uc003dhn.2	-	5	1166	c.848A>G	c.(847-849)AAG>AGG	p.K283R	WNT5A_uc003dhm.2_Missense_Mutation_p.K268R|WNT5A_uc010hmw.2_Missense_Mutation_p.K268R|WNT5A_uc010hmx.2_Missense_Mutation_p.K194R	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	283					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		CTGTACCAACTTGCCCCGGCT	0.617000													6	18					0	0	0.001984	0	0	
GABRR3	200959	broad.mit.edu	37	3	97705706	97705706	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:97705706T>C	uc011bgr.1	-	9	1225	c.1225A>G	c.(1225-1227)AGA>GGA	p.R409G		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	409	Cytoplasmic (Potential).|Interaction with SQSTM1 (By similarity).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						ATCGATTTTCTTCTCATGAAG	0.438000													19	18					0	0	0.010504	0	0	
OR5AC2	81050	broad.mit.edu	37	3	97806150	97806150	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:97806150T>G	uc011bgs.1	+	1	134	c.134T>G	c.(133-135)CTT>CGT	p.L45R		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTGGGCAACCTTGGACTGATA	0.448000													44	216					0	0	0.013114	0	0	
OR5K2	402135	broad.mit.edu	37	3	98216669	98216669	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:98216669A>C	uc011bgx.1	+	1	145	c.145A>C	c.(145-147)ATA>CTA	p.I49L		NM_001004737	NP_001004737	Q8NHB8	OR5K2_HUMAN	olfactory receptor, family 5, subfamily K,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						GGTGGCACTGATATTTACACA	0.453000													49	269					0	0	0.014410	0	0	
ABI3BP	25890	broad.mit.edu	37	3	100523678	100523678	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:100523678G>A	uc003dun.2	-	20	1790	c.1705C>T	c.(1705-1707)CCA>TCA	p.P569S	ABI3BP_uc003duj.2_Missense_Mutation_p.P124S|ABI3BP_uc003duk.2_Missense_Mutation_p.P253S|ABI3BP_uc003dul.2_Missense_Mutation_p.P374S|ABI3BP_uc011bhd.1_Missense_Mutation_p.P523S|ABI3BP_uc003dum.2_5'UTR	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	569	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						GACGTTTTTGGTTTTGCAGTA	0.413000													15	80					0	0	0.004990	0	0	
KTELC1	56983	broad.mit.edu	37	3	119205779	119205779	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:119205779A>C	uc003ecm.2	+	7	822	c.738A>C	c.(736-738)AAA>AAC	p.K246N	KTELC1_uc011biz.1_RNA|KTELC1_uc011bja.1_Missense_Mutation_p.K87N	NM_152305	NP_689518	Q8NBL1	PGLT1_HUMAN	KTEL (Lys-Tyr-Glu-Leu) containing 1 precursor	246						endoplasmic reticulum lumen	UDP-glucosyltransferase activity				0				GBM - Glioblastoma multiforme(114;0.233)		AATCTATGAAAGTAATCACCA	0.428000													18	86					0	0	0.004990	0	0	
HGD	3081	broad.mit.edu	37	3	120352085	120352085	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:120352085C>A	uc003edw.2	-	13	1467	c.1097G>T	c.(1096-1098)AGC>ATC	p.S366I	HGD_uc003edv.2_Missense_Mutation_p.S225I	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	366					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		GGTCATTGTGCTGTGTAGACT	0.557000													16	106					1.52009e-12	1.58e-12	0.003163	1	0	
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:126707544T>G	uc003ejg.2	+	1	43	c.39T>G	c.(37-39)GGT>GGG	p.G13G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	36	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.567000													9	30					0	0	0.002450	0	0	
PLXNA1	5361	broad.mit.edu	37	3	126736735	126736735	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:126736735G>A	uc003ejg.2	+	18	3595	c.3591G>A	c.(3589-3591)ACG>ACA	p.T1197T		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1220	Extracellular (Potential).|IPT/TIG 4.				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		ACAAGGTCACGGTGCGTCTGT	0.657000													11	25					0	0	0.013537	0	0	
TOPBP1	11073	broad.mit.edu	37	3	133379947	133379947	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:133379947A>C	uc003eps.2	-	2	157	c.25T>G	c.(25-27)TTT>GTT	p.F9V		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	9					DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						TTCACAAAAAACGGTTCTTTG	0.308000								Other_conserved_DNA_damage_response_genes					10	11					0	0	0.006214	0	0	
PCOLCE2	26577	broad.mit.edu	37	3	142567080	142567080	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:142567080C>T	uc003evd.2	-	3	623	c.427G>A	c.(427-429)GCT>ACT	p.A143T		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	143	CUB 1.					extracellular region	collagen binding|heparin binding|peptidase activator activity			ovary(2)|skin(1)	3						GGTTCAGCAGCGGAGAACATG	0.458000													7	54					0	0	0.003080	0	0	
GNB4	59345	broad.mit.edu	37	3	179132727	179132727	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:179132727A>T	uc003fjv.3	-	6	656	c.376T>A	c.(376-378)TTA>ATA	p.L126I	GNB4_uc003fju.3_Missense_Mutation_p.L37I	NM_021629	NP_067642	Q9HAV0	GBB4_HUMAN	guanine nucleotide-binding protein, beta-4	126	WD 2.				cellular response to glucagon stimulus|energy reserve metabolic process	plasma membrane	signal transducer activity			skin(2)	2	all_cancers(143;2.01e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.237)			CTGGTCTTTAAGTTATATATA	0.468000													49	243					0	0	0.014410	0	0	
IL1RAP	3556	broad.mit.edu	37	3	190366162	190366162	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:190366162A>C	uc003fsm.1	+	12	1587	c.1381A>C	c.(1381-1383)AGC>CGC	p.S461R	IL1RAP_uc010hzg.1_Missense_Mutation_p.S461R|IL1RAP_uc003fsn.1_RNA|IL1RAP_uc003fso.1_Missense_Mutation_p.S461R|IL1RAP_uc003fsp.1_RNA|IL1RAP_uc003fsq.2_Intron	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	461	Cytoplasmic (Potential).|TIR.				inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		CATTCAGAAAAGCAGACGCCT	0.512000													41	210					0	0	0.007835	0	0	
APOD	347	broad.mit.edu	37	3	195300808	195300808	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:195300808G>T	uc003fur.2	-	3	520	c.158C>A	c.(157-159)CCA>CAA	p.P53Q	APOD_uc011bsx.1_Missense_Mutation_p.P53Q	NM_001647	NP_001638	P05090	APOD_HUMAN	apolipoprotein D precursor	53					lipid metabolic process	extracellular space	lipid binding|lipid transporter activity|protein binding			ovary(2)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		AAAGGTTGTTGGGATCTTCTC	0.478000													10	66					2.80697e-09	2.90329e-09	0.010729	1	0	
MUC4	4585	broad.mit.edu	37	3	195495955	195495955	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr3:195495955G>A	uc011bto.1	-	8	13543	c.13083C>T	c.(13081-13083)AGC>AGT	p.S4361S	MUC4_uc003fuz.2_Missense_Mutation_p.A117V|MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_Missense_Mutation_p.A35V|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.A35V|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Silent_p.S53S|MUC4_uc011bti.1_Silent_p.S53S|MUC4_uc011btj.1_Silent_p.S230S|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_5'UTR|MUC4_uc011btm.1_Silent_p.S178S|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Silent_p.S253S|MUC4_uc003fvp.2_Silent_p.S202S|MUC4_uc010hzu.1_Silent_p.S1101S	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1246	NIDO.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GCATCCCACCGCTCTGGTAGA	0.612000													17	12					0	0	0.004007	0	0	
CYTL1	54360	broad.mit.edu	37	4	5018891	5018891	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:5018891A>T	uc003gig.2	-	2	194	c.169T>A	c.(169-171)TAC>AAC	p.Y57N		NM_018659	NP_061129	Q9NRR1	CYTL1_HUMAN	cytokine-like 1 precursor	57					signal transduction	extracellular space|soluble fraction	receptor binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.164)		CTGGGCAGGTATCTCACACAT	0.582000													5	55					0	0	0.000602	0	0	
LGI2	55203	broad.mit.edu	37	4	25030161	25030161	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:25030161T>G	uc003grf.2	-	2	336	c.237A>C	c.(235-237)CGA>CGC	p.R79R		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	79						extracellular region					0		Breast(46;0.173)				GGGAAAACATTCGGTCCTTGA	0.522000													6	27					0	0	0.001168	0	0	
TLR6	10333	broad.mit.edu	37	4	38830380	38830380	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:38830380T>C	uc003gtm.2	-	1	781	c.715A>G	c.(715-717)ATT>GTT	p.I239V	TLR6_uc010ifg.1_Missense_Mutation_p.I239V	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	239	Extracellular (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						AAAAATTTAATGAAAACTTGA	0.338000													12	46					0	0	0.013537	0	0	
N4BP2	55728	broad.mit.edu	37	4	40115104	40115104	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:40115104A>C	uc003guy.3	+	7	1978	c.1640A>C	c.(1639-1641)AAG>ACG	p.K547T	N4BP2_uc010ifq.2_Missense_Mutation_p.K467T|N4BP2_uc010ifr.2_Missense_Mutation_p.K467T	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	547						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						ACATGGTGGAAGTTTAAACCA	0.363000													38	172					0	0	0.007835	0	0	
ATP8A1	10396	broad.mit.edu	37	4	42583692	42583692	+	Silent	SNP	T	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:42583692T>A	uc003gwr.2	-	10	1012	c.780A>T	c.(778-780)ACA>ACT	p.T260T	ATP8A1_uc003gws.2_Silent_p.T260T|ATP8A1_uc011byz.1_Silent_p.T260T	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	260	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	GAACCCACTGTGTATTTCTCA	0.413000													20	115					0	0	0.012319	0	0	
UGT2A1	10941	broad.mit.edu	37	4	70513235	70513235	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:70513235A>C	uc003hem.3	-	1	191	c.128T>G	c.(127-129)CTC>CGC	p.L43R	UGT2A1_uc011caq.1_Missense_Mutation_p.L43R|UGT2A1_uc010ihu.2_Missense_Mutation_p.L43R|UGT2A1_uc010iht.2_Missense_Mutation_p.L43R	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	43	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						CTTTTTAATGAGCTCATCTAT	0.393000													12	44					0	0	0.010729	0	0	
MEPE	56955	broad.mit.edu	37	4	88766376	88766376	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:88766376A>C	uc003hqy.2	+	4	395	c.356A>C	c.(355-357)AAG>ACG	p.K119T	MEPE_uc010ikn.2_Missense_Mutation_p.K6T	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	119					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		ATTTATCCTAAGTCAACTGGG	0.363000													10	30					0	0	0.008291	0	0	
FAM13A	10144	broad.mit.edu	37	4	89950685	89950685	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:89950685A>C	uc003hse.1	-	2	351	c.143T>G	c.(142-144)CTT>CGT	p.L48R	FAM13A_uc003hsf.1_5'UTR|FAM13A_uc003hsh.1_5'UTR|FAM13A_uc003hsi.2_Missense_Mutation_p.L48R|FAM13A_uc003hsj.2_Missense_Mutation_p.L48R	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	48	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						CTGCCGTTCAAGTTCTTGGAG	0.428000													36	135					0	0	0.005524	0	0	
C4orf37	285555	broad.mit.edu	37	4	98902359	98902359	+	Silent	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:98902359A>T	uc003htt.1	-	6	813	c.723T>A	c.(721-723)GGT>GGA	p.G241G		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	241											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		CAGCACTTTGACCAAATGGAA	0.388000													28	116					0	0	0.007291	0	0	
EIF4E	1977	broad.mit.edu	37	4	99823081	99823081	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:99823081G>C	uc003hue.2	-	2	1594	c.71C>G	c.(70-72)TCT>TGT	p.S24C	EIF4E_uc011cea.1_Missense_Mutation_p.S44C|EIF4E_uc011ceb.1_Missense_Mutation_p.S24C|EIF4E_uc011cec.1_Missense_Mutation_p.S24C	NM_001968	NP_001959	P06730	IF4E_HUMAN	eukaryotic translation initiation factor 4E	24					G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|interspecies interaction between organisms|mRNA export from nucleus|nuclear-transcribed mRNA poly(A) tail shortening|positive regulation of mitotic cell cycle|regulation of translation	cytoplasmic mRNA processing body|cytosol|eukaryotic translation initiation factor 4F complex|mRNA cap binding complex|RNA-induced silencing complex	protein binding|RNA cap binding|translation initiation factor activity			lung(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)|LUSC - Lung squamous cell carcinoma(721;0.00227)		CTCCTGATTAGATTCCGTTTT	0.378000													53	160					0	0	0.014410	0	0	
NDST3	9348	broad.mit.edu	37	4	119163259	119163259	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:119163259A>C	uc003ibx.2	+	12	2757	c.2354A>C	c.(2353-2355)AAG>ACG	p.K785T		NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	785	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						GAAGTACAGAAGTTTCTAGGA	0.299000													22	106					0	0	0.002780	0	0	
ADAD1	132612	broad.mit.edu	37	4	123332388	123332388	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:123332388G>A	uc003ieo.2	+	9	1092	c.860G>A	c.(859-861)AGA>AAA	p.R287K	ADAD1_uc003iep.2_Intron|ADAD1_uc003ieq.2_Missense_Mutation_p.R269K	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	287	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TACTTTTATAGACAACTTCTG	0.289000													7	32					0	0	0.001984	0	0	
FAT4	79633	broad.mit.edu	37	4	126389829	126389829	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:126389829A>T	uc003ifj.3	+	11	12062	c.12062A>T	c.(12061-12063)GAC>GTC	p.D4021V	FAT4_uc011cgp.1_Missense_Mutation_p.D2284V|FAT4_uc003ifi.1_Missense_Mutation_p.D1499V	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4021	Laminin G-like 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGACAGGCGACCGGGCTGAG	0.403000													15	53					0	0	0.004007	0	0	
FAT4	79633	broad.mit.edu	37	4	126411383	126411383	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:126411383T>A	uc003ifj.3	+	17	13406	c.13406T>A	c.(13405-13407)CTT>CAT	p.L4469H	FAT4_uc011cgp.1_Missense_Mutation_p.L2710H|FAT4_uc003ifi.1_Missense_Mutation_p.L1946H	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4469	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTGGCCTGTCTTGGCGTCCTC	0.602000													14	57					0	0	0.002450	0	0	
DCHS2	54798	broad.mit.edu	37	4	155287504	155287504	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:155287504C>T	uc003inw.2	-	5	552	c.552G>A	c.(550-552)ACG>ACA	p.T184T	DCHS2_uc003inx.2_Silent_p.T778T	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	184	Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CACTGATGCTCGTCACATAGG	0.502000													12	38					0	0	0.013537	0	0	
GRIA2	2891	broad.mit.edu	37	4	158254090	158254090	+	Silent	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr4:158254090A>G	uc003ipm.3	+	7	1461	c.1002A>G	c.(1000-1002)CCA>CCG	p.P334P	GRIA2_uc011cit.1_Silent_p.P287P|GRIA2_uc003ipl.3_Silent_p.P334P|GRIA2_uc003ipk.3_Silent_p.P287P|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	334	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TGGCAAACCCAGCAGTGCCCT	0.458000													9	57					0	0	0.006214	0	0	
CTNND2	1501	broad.mit.edu	37	5	11364952	11364952	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:11364952A>C	uc003jfa.1	-	8	1373	c.1228T>G	c.(1228-1230)TTG>GTG	p.L410V	CTNND2_uc010itt.2_Missense_Mutation_p.L319V|CTNND2_uc011cmy.1_Missense_Mutation_p.L73V|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	410	ARM 1.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGGGCCCGCAACTCTGGGCCC	0.572000													18	98					0	0	0.014323	0	0	
DNAH5	1767	broad.mit.edu	37	5	13729648	13729648	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:13729648T>G	uc003jfd.2	-	69	11825	c.11783A>C	c.(11782-11784)AAA>ACA	p.K3928T	DNAH5_uc003jfc.2_Missense_Mutation_p.K96T	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3928					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGGACAAGCTTTAAGGTCTAA	0.333000									Kartagener_syndrome				7	45					0	0	0.001984	0	0	
DNAH5	1767	broad.mit.edu	37	5	13751364	13751364	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:13751364T>G	uc003jfd.2	-	65	11076	c.11034A>C	c.(11032-11034)AAA>AAC	p.K3678N	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3678	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGTCACCAACTTTCACCtttt	0.328000									Kartagener_syndrome				13	33					0	0	0.013537	0	0	
BRIX1	55299	broad.mit.edu	37	5	34915867	34915867	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:34915867G>A	uc003jja.2	+	1	48	c.24G>A	c.(22-24)CGG>CGA	p.R8R	RAD1_uc003jiw.2_5'Flank|RAD1_uc003jix.2_5'Flank|RAD1_uc003jiy.2_Intron|BRIX1_uc003jiz.2_Silent_p.R8R|BRIX1_uc011col.1_Silent_p.R8R	NM_018321	NP_060791	Q8TDN6	BRX1_HUMAN	BRIX	8					ribosome biogenesis|translation	nucleolus	aminoacyl-tRNA ligase activity|ATP binding|protein binding				0						AGAGGAAACGGCGTGGAGGCT	0.607000													5	7					0	0	0.001984	0	0	
SPEF2	79925	broad.mit.edu	37	5	35727819	35727819	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:35727819A>G	uc003jjo.2	+	21	3068	c.2957A>G	c.(2956-2958)AAG>AGG	p.K986R	SPEF2_uc003jjp.1_Missense_Mutation_p.K472R	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	986					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GTACCAGTAAAGAAATCACCT	0.398000													14	55					0	0	0.001855	0	0	
SPEF2	79925	broad.mit.edu	37	5	35814620	35814620	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:35814620A>C	uc003jjo.2	+	37	5545	c.5434A>C	c.(5434-5436)AGA>CGA	p.R1812R	SPEF2_uc003jjr.2_Silent_p.R867R	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1812					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGATGGAGAGAGATCACCTTC	0.308000													10	51					0	0	0.010729	0	0	
HSPB3	8988	broad.mit.edu	37	5	53752045	53752045	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:53752045A>C	uc003jph.1	+	1	601	c.426A>C	c.(424-426)GAA>GAC	p.E142D		NM_006308	NP_006299	Q12988	HSPB3_HUMAN	heat shock 27kDa protein 3	142					cell death|response to heat|response to unfolded protein	cytoplasm|nucleus					0		Lung NSC(810;0.00104)				TGGTGGTGGAAGTAAAGGATC	0.443000													13	59					0	0	0.013537	0	0	
NAIP	4671	broad.mit.edu	37	5	70405051	70405051	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:70405051A>G	uc003kat.1	-	1	2813	c.1547T>C	c.(1546-1548)TTC>TCC	p.F516S		NM_022892	NP_075043	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	904					anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		TGGGTGGTCGAAAAAGTACTG	0.428000													38	258					0	0	0.010771	0	0	
RASGRF2	5924	broad.mit.edu	37	5	80390141	80390141	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:80390141C>A	uc003kha.1	+	11	1578	c.1578C>A	c.(1576-1578)GAC>GAA	p.D526E	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	526	PH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CTCTAATAGACTGCACATTGA	0.438000													3	27					0.004672	0.00471671	0.004672	1	0	
SLCO4C1	353189	broad.mit.edu	37	5	101631706	101631706	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:101631706A>C	uc003knm.2	-	1	548	c.261T>G	c.(259-261)TCT>TCG	p.S87S		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	87	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		TCCAGCCGTAAGACCCCTCCT	0.572000													13	38					0	0	0.001855	0	0	
KCNN2	3781	broad.mit.edu	37	5	113822854	113822854	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:113822854A>C	uc003kqo.2	+	6	1819	c.1362A>C	c.(1360-1362)AAA>AAC	p.K454N	KCNN2_uc003kqp.2_Missense_Mutation_p.K106N|KCNN2_uc010jcg.2_RNA|uc003kqr.1_Intron	NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	454	Calmodulin-binding (By similarity).					integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		ATCAACGAAAATTCCTGCAAG	0.323000													9	44					0	0	0.008291	0	0	
ACSL6	23305	broad.mit.edu	37	5	131307262	131307262	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:131307262C>T	uc010jdo.1	-	14	1423	c.1340G>A	c.(1339-1341)CGG>CAG	p.R447Q	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.R472Q|ACSL6_uc003kvy.1_Missense_Mutation_p.R472Q|ACSL6_uc003kwb.2_Missense_Mutation_p.R437Q|ACSL6_uc003kvz.1_Missense_Mutation_p.R372Q|ACSL6_uc003kwa.1_Missense_Mutation_p.R458Q|ACSL6_uc003kvw.1_Missense_Mutation_p.R93Q|ACSL6_uc010jdn.1_Missense_Mutation_p.R462Q	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	447	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TAGAGCTGCCCGGAGAAATCC	0.532000													7	18					0	0	0.001984	0	0	
PCDHA6	56142	broad.mit.edu	37	5	140209285	140209285	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:140209285G>A	uc003lho.2	+	1	1636	c.1609G>A	c.(1609-1611)GCG>ACG	p.A537T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Missense_Mutation_p.A537T	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	537	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGGTGAGCGCGCGCGACGC	0.677000													34	120					0	0	0.012213	0	0	
PCDHA8	56140	broad.mit.edu	37	5	140222313	140222313	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:140222313G>A	uc003lhs.2	+	1	1407	c.1407G>A	c.(1405-1407)CCG>CCA	p.P469P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.P469P	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	469	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAACAACCCGCCGGGCTGCC	0.672000													20	48					0	0	0.010504	0	0	
PCDHB12	56124	broad.mit.edu	37	5	140589755	140589755	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:140589755T>A	uc003liz.2	+	1	1465	c.1276T>A	c.(1276-1278)TTG>ATG	p.L426M	PCDHB12_uc011dak.1_Missense_Mutation_p.L89M	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	426	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGTCACCGACTTGGGGACCCC	0.522000													14	63					0	0	0.003163	0	0	
PCDHGB2	56103	broad.mit.edu	37	5	140741903	140741903	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:140741903A>C	uc003ljs.1	+	1	2201	c.2201A>C	c.(2200-2202)AAG>ACG	p.K734T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Missense_Mutation_p.K734T|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	734	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCAGCTCCAAGCCTGGACCT	0.527000													27	125					0	0	0.005443	0	0	
KCTD16	57528	broad.mit.edu	37	5	143853664	143853664	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:143853664A>C	uc003lnm.1	+	4	1903	c.1274A>C	c.(1273-1275)AAG>ACG	p.K425T	KCTD16_uc003lnn.1_Missense_Mutation_p.K425T	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	425						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			CTTTTAAGGAAGTATCATCTA	0.358000													10	73					0	0	0.006214	0	0	
SH3TC2	79628	broad.mit.edu	37	5	148424152	148424152	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:148424152A>G	uc003lpu.2	-	4	481	c.329T>C	c.(328-330)CTC>CCC	p.L110P	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc003lps.2_5'Flank|SH3TC2_uc003lpt.2_5'UTR|SH3TC2_uc010jgx.2_Missense_Mutation_p.L110P|SH3TC2_uc003lpv.1_5'UTR|SH3TC2_uc011dbz.1_5'UTR|SH3TC2_uc003lpw.1_3'UTR	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	110							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGGTGATGAGAAACTGGGC	0.483000													10	46					0	0	0.010729	0	0	
GRIA1	2890	broad.mit.edu	37	5	153149735	153149735	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:153149735A>C	uc003lva.3	+	13	2395	c.2030A>C	c.(2029-2031)AAA>ACA	p.K677T	GRIA1_uc003luy.3_Missense_Mutation_p.K677T|GRIA1_uc003luz.3_Missense_Mutation_p.K582T|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.K597T|GRIA1_uc011dcx.1_Missense_Mutation_p.K608T|GRIA1_uc011dcy.1_Missense_Mutation_p.K687T|GRIA1_uc011dcz.1_Missense_Mutation_p.K687T	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	677	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CAGAGGTCTAAAATTGCTGTG	0.468000													22	89					0	0	0.014323	0	0	
ITK	3702	broad.mit.edu	37	5	156649893	156649893	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:156649893A>C	uc003lwo.1	+	6	598	c.516A>C	c.(514-516)GAA>GAC	p.E172D		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	172	SH3.			PE -> GS (in Ref. 6; AA sequence).	cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGGAACCTGAAGAAACTGTGG	0.488000			T	SYK	peripheral T-cell lymphoma								9	56					0	0	0.010729	0	0	
SLIT3	6586	broad.mit.edu	37	5	168671766	168671766	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr5:168671766T>C	uc003mab.2	-	3	704	c.284A>G	c.(283-285)AAC>AGC	p.N95S	SLIT3_uc010jjg.2_Missense_Mutation_p.N95S|SLIT3_uc010jji.2_Missense_Mutation_p.N95S	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	95	LRR 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCTGACCTGGTTGTCTTCCAG	0.498000													11	40					0	0	0.013537	0	0	
CCHCR1	54535	broad.mit.edu	37	6	31116191	31116191	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:31116191G>A	uc003nsr.3	-	10	1427	c.1304C>T	c.(1303-1305)GCT>GTT	p.A435V	CCHCR1_uc011dne.1_Missense_Mutation_p.A435V|CCHCR1_uc003nsq.3_Missense_Mutation_p.A488V|CCHCR1_uc003nsp.3_Missense_Mutation_p.A524V|CCHCR1_uc010jsk.1_Missense_Mutation_p.A435V	NM_019052	NP_061925	Q8TD31	CCHCR_HUMAN	coiled-coil alpha-helical rod protein 1 isoform	435	Potential.				cell differentiation|multicellular organismal development	cytoplasm|nucleus	protein binding			skin(1)	1						CCTGCTGACAGCATTGACCAC	0.627000													4	93					0	0	0.000602	0	0	
PBX2	5089	broad.mit.edu	37	6	32156083	32156083	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:32156083A>C	uc003oav.1	-	3	765	c.494T>G	c.(493-495)CTT>CGT	p.L165R	PBX2_uc003oaw.2_Missense_Mutation_p.L165R	NM_002586	NP_002577	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2	165							transcription factor binding			ovary(1)	1						GATCTGGGCAAGTTTGCTGCG	0.592000													23	74					0	0	0.002780	0	0	
USP49	25862	broad.mit.edu	37	6	41766457	41766457	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:41766457C>T	uc003ori.2	-	7	2103	c.1881G>A	c.(1879-1881)GCG>GCA	p.A627A		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	Error:Variant_position_missing_in_Q70CQ1_after_alignment					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GTAAAGCGCACGCACCTCCCT	0.493000													31	127					0	0	0.008361	0	0	
PRPH2	5961	broad.mit.edu	37	6	42690053	42690053	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:42690053T>G	uc003osk.2	-	1	306	c.20A>C	c.(19-21)AAG>ACG	p.K7T		NM_000322	NP_000313	P23942	PRPH2_HUMAN	peripherin 2	7	Cytoplasmic (Potential).				cell adhesion|visual perception	integral to membrane				ovary(4)|central_nervous_system(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.00178)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0904)			CTGGTCAAACTTGACTTTCAG	0.552000													15	55					0	0	0.003163	0	0	
RUNX2	860	broad.mit.edu	37	6	45514961	45514961	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:45514961C>T	uc011dvx.1	+	9	1695	c.1485C>T	c.(1483-1485)GAC>GAT	p.D495D	RUNX2_uc011dvy.1_Silent_p.D473D|RUNX2_uc003oxt.2_Silent_p.D481D	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	495	Pro/Ser/Thr-rich.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						ATGGTGTTGACGCTGATGGAA	0.493000													30	120					0	0	0.008361	0	0	
PKHD1	5314	broad.mit.edu	37	6	51612651	51612651	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:51612651A>G	uc003pah.1	-	58	10039	c.9763T>C	c.(9763-9765)TGG>CGG	p.W3255R	PKHD1_uc010jzn.1_Missense_Mutation_p.W1238R|PKHD1_uc003pai.2_Missense_Mutation_p.W3255R	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3255	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TCCTGAGGCCACTGATTTGGT	0.443000													19	115					0	0	0.007413	0	0	
BMP5	653	broad.mit.edu	37	6	55659183	55659183	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:55659183A>C	uc003pcq.2	-	3	1438	c.726T>G	c.(724-726)GCT>GCG	p.A242A	BMP5_uc011dxf.1_Silent_p.A242A	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	242					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			CCACATCTAAAGCTTGGGCCT	0.383000													15	131					0	0	0.004007	0	0	
ZNF451	26036	broad.mit.edu	37	6	57013172	57013172	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:57013172G>A	uc003pdm.1	+	10	2513	c.2289G>A	c.(2287-2289)CAG>CAA	p.Q763Q	ZNF451_uc003pdl.2_Silent_p.Q763Q|ZNF451_uc003pdn.1_Silent_p.Q763Q|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Silent_p.Q763Q	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	763	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			CAACAGCACAGAATTTAACCG	0.418000													3	20					0	0	0.004672	0	0	
COL12A1	1303	broad.mit.edu	37	6	75844528	75844528	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:75844528A>C	uc003phs.2	-	32	5604	c.5438T>G	c.(5437-5439)CTG>CGG	p.L1813R	COL12A1_uc003pht.2_Missense_Mutation_p.L649R	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1813	Fibronectin type-III 13.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						GTCTGGCTTCAGTTTCTGCAG	0.493000													18	83					0	0	0.006122	0	0	
GPRC6A	222545	broad.mit.edu	37	6	117130660	117130660	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:117130660T>G	uc003pxj.1	-	2	337	c.315A>C	c.(313-315)GAA>GAC	p.E105D	GPRC6A_uc003pxk.1_Missense_Mutation_p.E105D|GPRC6A_uc003pxl.1_Missense_Mutation_p.E105D	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	105	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CCACTGTGACTTCTGTACAAG	0.418000													12	59					0	0	0.010729	0	0	
SLC35F1	222553	broad.mit.edu	37	6	118635300	118635300	+	Missense_Mutation	SNP	G	A	A	rs138680595	byFrequency	TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:118635300G>A	uc003pxx.3	+	8	1313	c.1112G>A	c.(1111-1113)CGC>CAC	p.R371H	SLC35F1_uc003pxy.1_Missense_Mutation_p.R176H	NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	371					transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		AAGCAGTTCCGCAATCCTTCA	0.557000													14	132					0	0	0.004007	0	0	
C6orf174	387104	broad.mit.edu	37	6	127834069	127834069	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:127834069T>C	uc003qbd.2	-	4	2317	c.1452A>G	c.(1450-1452)CAA>CAG	p.Q484Q		NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	484	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		TCTGTAAAGCTTGCTTTGCAA	0.328000													5	38					0	0	0.000602	0	0	
UTRN	7402	broad.mit.edu	37	6	144768817	144768817	+	Missense_Mutation	SNP	T	G	G	rs116045799	by1000genomes	TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:144768817T>G	uc003qkt.2	+	15	1894	c.1802T>G	c.(1801-1803)CTT>CGT	p.L601R	UTRN_uc010khq.1_Missense_Mutation_p.L601R	NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	601	Interaction with SYNM.|Spectrin 4.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GGACAATTACTTGATAATTCC	0.398000													13	87					0	0	0.002450	0	0	
UTRN	7402	broad.mit.edu	37	6	144801062	144801062	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:144801062C>T	uc003qkt.2	+	25	3543	c.3451C>T	c.(3451-3453)CGG>TGG	p.R1151W	UTRN_uc010khq.1_Missense_Mutation_p.R1151W	NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1151	Spectrin 8.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		ATATTTGGAGCGGGATTTTGA	0.507000													31	59					0	0	0.010818	0	0	
UTRN	7402	broad.mit.edu	37	6	144832238	144832238	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:144832238A>C	uc003qkt.2	+	34	5015	c.4923A>C	c.(4921-4923)GAA>GAC	p.E1641D		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1641	Interaction with SYNM.|Spectrin 11.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		CCTGGACTGAAGATTGGTGCA	0.418000													21	80					0	0	0.010504	0	0	
FBXO30	84085	broad.mit.edu	37	6	146125620	146125620	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:146125620T>A	uc003qla.2	-	2	2121	c.1922A>T	c.(1921-1923)AAG>ATG	p.K641M	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	641							ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		CCTCATTAACTTGGATACACA	0.463000													40	96					0	0	0.007835	0	0	
SYNE1	23345	broad.mit.edu	37	6	152590341	152590341	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:152590341T>C	uc010kiw.2	-	99	19256	c.18654A>G	c.(18652-18654)CAA>CAG	p.Q6218Q	SYNE1_uc010kiv.2_Silent_p.Q742Q|SYNE1_uc003qos.3_Silent_p.Q742Q|SYNE1_uc003qot.3_Silent_p.Q6147Q|SYNE1_uc003qou.3_Silent_p.Q6218Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6218	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGGTGCGAGCTTGGGCCAGCC	0.557000										HNSCC(10;0.0054)			35	82					0	0	0.004289	0	0	
RGS17	26575	broad.mit.edu	37	6	153332885	153332885	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:153332885A>T	uc003qpm.2	-	5	613	c.457T>A	c.(457-459)TCT>ACT	p.S153T		NM_012419	NP_036551	Q9UGC6	RGS17_HUMAN	regulator of G-protein signalling 17	153	RGS.				negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			pancreas(1)	1		Ovarian(120;0.126)		OV - Ovarian serous cystadenocarcinoma(155;1.09e-09)|BRCA - Breast invasive adenocarcinoma(81;0.0429)		CTAACTCGAGAATCAAGACTG	0.328000									Lung_Cancer_Familial_Clustering_of				9	42					0	0	0.004482	0	0	
T	6862	broad.mit.edu	37	6	166571913	166571913	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr6:166571913G>T	uc003quu.1	-	9	1691	c.1198C>A	c.(1198-1200)CTG>ATG	p.L400M	T_uc003qut.1_Missense_Mutation_p.L401M|T_uc003quv.1_Missense_Mutation_p.L342M	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	400					anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		CCTTCGTACAGTGGGGATCCC	0.692000									Chordoma_Familial_Clustering_of				20	79					2.37509e-13	2.48091e-13	0.010504	1	0	
DNAH11	8701	broad.mit.edu	37	7	21603831	21603831	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:21603831T>G	uc003svc.2	+	6	1041	c.1010T>G	c.(1009-1011)CTT>CGT	p.L337R		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	337	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GATGTGGAACTTTACCTGAGA	0.408000									Kartagener_syndrome				15	86					0	0	0.003163	0	0	
DNAH11	8701	broad.mit.edu	37	7	21630894	21630894	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:21630894T>G	uc003svc.2	+	14	2397	c.2366T>G	c.(2365-2367)CTG>CGG	p.L789R		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	789	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GAAGATGAGCTGAGGGCTATT	0.512000									Kartagener_syndrome				10	92					0	0	0.006214	0	0	
HOXA11	3207	broad.mit.edu	37	7	27224672	27224672	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:27224672G>A	uc003syx.2	-	1	164	c.92C>T	c.(91-93)CCT>CTT	p.P31L	HOXA11_uc003syy.2_Intron|HOXA11AS_uc003syz.1_5'Flank	NM_005523	NP_005514	P31270	HXA11_HUMAN	homeobox A11	31					branching involved in ureteric bud morphogenesis|cartilage development involved in endochondral bone morphogenesis|developmental growth|dorsal/ventral pattern formation|mesodermal cell fate specification|positive regulation of cell development|positive regulation of chondrocyte differentiation	protein-DNA complex|transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)	2						CAGAAAAGAAGGGAGGCTGGA	0.537000			T	NUP98	CML						OREG0003747	type=REGULATORY REGION|Gene=BC025338|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	18	150					0	0	0.007413	0	0	
HOXA11	3207	broad.mit.edu	37	7	27224674	27224674	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:27224674G>A	uc003syx.2	-	1	162	c.90C>T	c.(88-90)CTC>CTT	p.L30L	HOXA11_uc003syy.2_Intron|HOXA11AS_uc003syz.1_5'Flank	NM_005523	NP_005514	P31270	HXA11_HUMAN	homeobox A11	30					branching involved in ureteric bud morphogenesis|cartilage development involved in endochondral bone morphogenesis|developmental growth|dorsal/ventral pattern formation|mesodermal cell fate specification|positive regulation of cell development|positive regulation of chondrocyte differentiation	protein-DNA complex|transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)	2						GAAAAGAAGGGAGGCTGGAGA	0.537000			T	NUP98	CML						OREG0003747	type=REGULATORY REGION|Gene=BC025338|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	17	149					0	0	0.006122	0	0	
CCM2	83605	broad.mit.edu	37	7	45078002	45078002	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:45078002G>A	uc003tmo.2	+	2	327	c.181G>A	c.(181-183)GAC>AAC	p.D61N	CCM2_uc003tmn.2_RNA|CCM2_uc003tmp.2_Intron|CCM2_uc003tmq.2_RNA|CCM2_uc003tmr.2_Missense_Mutation_p.D61N|CCM2_uc011kcb.1_Intron|CCM2_uc011kcc.1_Missense_Mutation_p.D82N|CCM2_uc003tms.2_Missense_Mutation_p.D82N	NM_031443	NP_113631	Q9BSQ5	CCM2_HUMAN	cerebral cavernous malformation 2 isoform 2	61	PID.				endothelial tube morphogenesis|integrin-mediated signaling pathway|stress-activated MAPK cascade|vasculogenesis	cytoplasm	protein binding				0						ACTGCTGAGCGACTATATTGA	0.532000									Familial_Cerebral_Cavernous_Angioma				7	152					0	0	0.003080	0	0	
AUTS2	26053	broad.mit.edu	37	7	69364348	69364348	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:69364348T>G	uc003tvw.3	+	2	1129	c.386T>G	c.(385-387)CTT>CGT	p.L129R	AUTS2_uc003tvv.3_Missense_Mutation_p.L129R|AUTS2_uc003tvx.3_Missense_Mutation_p.L129R	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	129										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CGAGAAGCACTTACCAATGGC	0.483000													18	101					0	0	0.008871	0	0	
WBSCR17	64409	broad.mit.edu	37	7	70886007	70886007	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:70886007A>G	uc003tvy.2	+	5	878	c.878A>G	c.(877-879)CAC>CGC	p.H293R	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	293	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				AACTCGGCCCACGGGTACAGC	0.582000													14	163					0	0	0.001855	0	0	
WBSCR17	64409	broad.mit.edu	37	7	70886090	70886090	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:70886090A>G	uc003tvy.2	+	5	961	c.961A>G	c.(961-963)AGG>GGG	p.R321G	WBSCR17_uc003tvz.2_Missense_Mutation_p.R20G	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	321	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TCTCCCCATCAGGTCTGTGGC	0.607000													6	49					0	0	0.001984	0	0	
SPDYE7P	441251	broad.mit.edu	37	7	72339511	72339511	+	RNA	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:72339511A>C	uc010lal.1	-	1		c.145T>G				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CCACCACTCCATCTTCCTTTT	0.582000													3	62					0	0	0.009096	0	0	
PCLO	27445	broad.mit.edu	37	7	82387919	82387919	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:82387919A>G	uc003uhx.2	-	25	15690	c.15401T>C	c.(15400-15402)CTT>CCT	p.L5134P		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	5057					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTGACCAAAAGTTTGTGCCA	0.388000													45	742					0	0	0.014410	0	0	
PCLO	27445	broad.mit.edu	37	7	82545548	82545548	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:82545548T>C	uc003uhx.2	-	7	12043	c.11754A>G	c.(11752-11754)CAA>CAG	p.Q3918Q	PCLO_uc003uhv.2_Silent_p.Q3918Q|PCLO_uc010lec.2_Silent_p.Q883Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3849	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAGGTGAAACTTGCTGATGGT	0.463000													57	852					0	0	0.014410	0	0	
PCLO	27445	broad.mit.edu	37	7	82545671	82545671	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:82545671T>G	uc003uhx.2	-	7	11920	c.11631A>C	c.(11629-11631)CAA>CAC	p.Q3877H	PCLO_uc003uhv.2_Missense_Mutation_p.Q3877H|PCLO_uc010lec.2_Missense_Mutation_p.Q842H	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3808	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAGGAACTAGTTGAGATTCTG	0.473000													50	852					0	0	0.014410	0	0	
AKAP9	10142	broad.mit.edu	37	7	91708757	91708757	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:91708757G>A	uc003ulg.2	+	31	7535	c.7310G>A	c.(7309-7311)CGT>CAT	p.R2437H	AKAP9_uc003ulf.2_Missense_Mutation_p.R2429H|AKAP9_uc003uli.2_Missense_Mutation_p.R2060H|AKAP9_uc003ulj.2_Missense_Mutation_p.R207H	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2449	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AAGAGAGAACGTGAAAGTGTG	0.348000			T	BRAF	papillary thyroid								8	299					0	0	0.003080	0	0	
CDK6	1021	broad.mit.edu	37	7	92355004	92355004	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:92355004T>A	uc011khw.1	-	4	885	c.473A>T	c.(472-474)CAA>CTA	p.Q158L	CDK6_uc010lez.2_Missense_Mutation_p.Q158L	NM_001259	NP_001250	Q00534	CDK6_HUMAN	cyclin-dependent kinase 6	158	Protein kinase.				cell dedifferentiation|cell division|G1 phase of mitotic cell cycle|gliogenesis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|negative regulation of osteoblast differentiation|positive regulation of cell-matrix adhesion|positive regulation of fibroblast proliferation|regulation of erythrocyte differentiation|regulation of gene expression|response to virus	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleus|ruffle	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			central_nervous_system(1)|skin(1)	2	all_cancers(62;8.72e-12)|all_epithelial(64;3.65e-10)|Breast(17;0.000675)|all_lung(186;0.0392)|Lung NSC(181;0.053)|all_neural(327;0.219)|all_hematologic(106;0.237)		STAD - Stomach adenocarcinoma(4;6.16e-07)|GBM - Glioblastoma multiforme(5;1.2e-06)|all cancers(6;3.1e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			GAGTTTTATTTGTCCGCTGCT	0.463000			T	MLLT10	ALL								21	823					0	0	0.010504	0	0	
PPP1R9A	55607	broad.mit.edu	37	7	94540772	94540772	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:94540772A>C	uc003unp.2	+	2	1629	c.1347A>C	c.(1345-1347)GAA>GAC	p.E449D	PPP1R9A_uc010lfj.2_Missense_Mutation_p.E449D|PPP1R9A_uc011kif.1_Missense_Mutation_p.E449D|PPP1R9A_uc003unq.2_Missense_Mutation_p.E449D|PPP1R9A_uc011kig.1_Missense_Mutation_p.E449D	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	449	Poly-Glu.|Interacts with protein phosphatase 1 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			CAGAAGAAGAAGAAATCCCAG	0.383000										HNSCC(28;0.073)			5	158					0	0	0.001168	0	0	
ZNF498	221785	broad.mit.edu	37	7	99217362	99217362	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:99217362T>G	uc003url.1	+	4	460	c.133T>G	c.(133-135)TTT>GTT	p.F45V	ZNF498_uc003urm.1_5'UTR|ZNF498_uc010lge.1_5'UTR|ZNF498_uc003urn.2_RNA|ZNF498_uc010lgf.1_Missense_Mutation_p.F45V|ZNF498_uc003uro.1_5'Flank	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	45	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					TCGGCTGAGGTTTCGGCAGTT	0.587000													29	164					0	0	0.008361	0	0	
STAG3	10734	broad.mit.edu	37	7	99796118	99796118	+	Missense_Mutation	SNP	C	T	T	rs147690401		TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:99796118C>T	uc003utx.1	+	13	1420	c.1265C>T	c.(1264-1266)ACG>ATG	p.T422M	STAG3_uc010lgs.1_Missense_Mutation_p.T210M|STAG3_uc011kjk.1_Missense_Mutation_p.T364M|STAG3_uc003uub.1_5'Flank	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	422					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGGGTGCTGACGGACGCGGAT	0.532000													20	120					0	0	0.012319	0	0	
RELN	5649	broad.mit.edu	37	7	103294587	103294587	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:103294587T>G	uc003vca.2	-	13	1667	c.1507A>C	c.(1507-1509)AGA>CGA	p.R503R	RELN_uc010liz.2_Silent_p.R503R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	503					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TGCTCTTTTCTTCCTTCAATT	0.393000													14	69					0	0	0.004007	0	0	
PRKAR2B	5577	broad.mit.edu	37	7	106793689	106793689	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:106793689T>C	uc003vdx.2	+	8	1086	c.911T>C	c.(910-912)ATT>ACT	p.I304T		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	304	cAMP 2.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						GAACAAATCATTGCTCAGGTA	0.303000													16	95					0	0	0.004007	0	0	
LAMB4	22798	broad.mit.edu	37	7	107732089	107732089	+	Silent	SNP	G	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:107732089G>T	uc010ljo.1	-	14	1767	c.1683C>A	c.(1681-1683)CTC>CTA	p.L561L	LAMB4_uc003vey.2_Silent_p.L561L	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	561	Laminin IV type B.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CCAGTCCTTGGAGTGTTGTGG	0.458000													19	72					1.10513e-12	1.15152e-12	0.014323	1	0	
TAS2R16	50833	broad.mit.edu	37	7	122635486	122635486	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:122635486A>C	uc003vkl.1	-	1	269	c.203T>G	c.(202-204)TTT>TGT	p.F68C		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	68	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						ATAGGAGCAAAAATTGTTCAG	0.408000													17	61					0	0	0.006122	0	0	
OR2A12	346525	broad.mit.edu	37	7	143792445	143792445	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:143792445C>A	uc011kty.1	+	1	245	c.245C>A	c.(244-246)GCA>GAA	p.A82E		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					AAGATGCTAGCAAATCTTGTG	0.438000													42	38					3.09479e-21	3.24876e-21	0.006999	1	0	
CNTNAP2	26047	broad.mit.edu	37	7	147092834	147092834	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr7:147092834C>T	uc003weu.1	+	10	2148	c.1632C>T	c.(1630-1632)TTC>TTT	p.F544F		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	544	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CGGGAAGTTTCGCGAATGTCA	0.438000										HNSCC(39;0.1)			23	97					0	0	0.002780	0	0	
RP1L1	94137	broad.mit.edu	37	8	10465425	10465425	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:10465425T>G	uc003wtc.2	-	4	6412	c.6183A>C	c.(6181-6183)GAA>GAC	p.E2061D		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2061					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GTGCCTCCTCTTCTGCCTCCG	0.627000													18	931					0	0	0.008871	0	0	
USP17L2	377630	broad.mit.edu	37	8	11994773	11994773	+	Silent	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:11994773G>A	uc003wvc.1	-	1	1497	c.1497C>T	c.(1495-1497)TCC>TCT	p.S499S	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	499					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						CAGTGTTCACGGACTCCTGAT	0.512000													28	780					0	0	0.009535	0	0	
DLC1	10395	broad.mit.edu	37	8	12946131	12946131	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:12946131A>G	uc003wwm.2	-	16	4601	c.4157T>C	c.(4156-4158)CTT>CCT	p.L1386P	DLC1_uc003wwk.1_Missense_Mutation_p.L949P|DLC1_uc003wwl.1_Missense_Mutation_p.L983P|DLC1_uc011kxx.1_Missense_Mutation_p.L875P	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	1386	START.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						CTGTTCTTTAAGTAGGCGCTT	0.458000													869	57					0	0	0.014410	0	0	
EFHA2	286097	broad.mit.edu	37	8	16921715	16921715	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:16921715T>C	uc003wxd.2	+	2	546	c.504T>C	c.(502-504)TTT>TTC	p.F168F		NM_181723	NP_859074	Q86XE3	EFHA2_HUMAN	EF-hand domain family, member A2	168						integral to membrane	calcium ion binding			skin(1)	1				Colorectal(111;0.0686)|COAD - Colon adenocarcinoma(73;0.239)		CGTATGATTTTATTTTGGCTG	0.348000													39	318					0	0	0.008740	0	0	
LPL	4023	broad.mit.edu	37	8	19813350	19813350	+	Splice_Site	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:19813350A>G	uc003wzk.3	+	6	1146	c.776_splice	c.e6-2	p.D259_splice		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor						fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	TTTTTTACCCAGATGTGGACC	0.433000													36	127					0	0	0.007835	0	0	
GFRA2	2675	broad.mit.edu	37	8	21562635	21562635	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:21562635A>C	uc003wzu.1	-	6	1582	c.907T>G	c.(907-909)TTT>GTT	p.F303V	GFRA2_uc003wzv.1_Missense_Mutation_p.F198V|GFRA2_uc003wzw.1_Missense_Mutation_p.F170V	NM_001495	NP_001486	O00451	GFRA2_HUMAN	GDNF family receptor alpha 2 isoform a	303						anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity				0				Colorectal(74;0.0189)|COAD - Colon adenocarcinoma(73;0.0727)		GTCATGTCAAACCCTGGGCAG	0.632000													4	16					0	0	0.000602	0	0	
SORBS3	10174	broad.mit.edu	37	8	22428560	22428560	+	Silent	SNP	C	T	T	rs146729720		TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:22428560C>T	uc003xbv.2	+	18	1909	c.1569C>T	c.(1567-1569)GAC>GAT	p.D523D	SORBS3_uc003xbw.3_Silent_p.D181D	NM_005775	NP_005766	O60504	VINEX_HUMAN	sorbin and SH3 domain containing 3 isoform 1	523					muscle contraction|positive regulation of stress fiber assembly	cytoskeleton|cytosol|nucleus	protein binding|structural constituent of cytoskeleton|vinculin binding				0		Prostate(55;0.0421)|Breast(100;0.102)		BRCA - Breast invasive adenocarcinoma(99;0.00566)|Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		TCTGTGACGACGGCCCCCAGC	0.711000													18	48					0	0	0.006122	0	0	
FZD3	7976	broad.mit.edu	37	8	28385541	28385541	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:28385541G>A	uc003xgx.2	+	5	1742	c.1264G>A	c.(1264-1266)GGT>AGT	p.G422S	FZD3_uc010lvb.2_Missense_Mutation_p.G422S	NM_017412	NP_059108	Q9NPG1	FZD3_HUMAN	frizzled 3 precursor	422	Helical; Name=6; (Potential).				canonical Wnt receptor signaling pathway|cell proliferation in midbrain|commissural neuron axon guidance|establishment of planar polarity|facial nucleus development|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|inner ear morphogenesis|neural tube closure|vasculature development	apical part of cell|axon|cytoplasm|dendrite|integral to membrane|neuron projection membrane|neuronal cell body|presynaptic active zone	G-protein coupled receptor activity|PDZ domain binding|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.109)|Kidney(114;0.13)|Colorectal(74;0.23)		GATCCGGATCGGTGTTTTCAG	0.403000													31	133					0	0	0.012213	0	0	
FZD3	7976	broad.mit.edu	37	8	28385645	28385645	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:28385645A>C	uc003xgx.2	+	5	1846	c.1368A>C	c.(1366-1368)GAA>GAC	p.E456D	FZD3_uc010lvb.2_Missense_Mutation_p.E456D	NM_017412	NP_059108	Q9NPG1	FZD3_HUMAN	frizzled 3 precursor	456	Extracellular (Potential).				canonical Wnt receptor signaling pathway|cell proliferation in midbrain|commissural neuron axon guidance|establishment of planar polarity|facial nucleus development|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|inner ear morphogenesis|neural tube closure|vasculature development	apical part of cell|axon|cytoplasm|dendrite|integral to membrane|neuron projection membrane|neuronal cell body|presynaptic active zone	G-protein coupled receptor activity|PDZ domain binding|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.109)|Kidney(114;0.13)|Colorectal(74;0.23)		GGATACAAGAACGCTGCAGAG	0.368000													21	74					0	0	0.008871	0	0	
GPR124	25960	broad.mit.edu	37	8	37697060	37697060	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:37697060T>G	uc003xkj.2	+	16	2794	c.2431T>G	c.(2431-2433)TTG>GTG	p.L811V	GPR124_uc010lvy.2_Missense_Mutation_p.L594V	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	811	Helical; Name=2; (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			GCTGCTGAACTTGTGCTTCCA	0.587000													12	57					0	0	0.010729	0	0	
PXDNL	137902	broad.mit.edu	37	8	52321900	52321900	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:52321900G>A	uc003xqu.3	-	17	2385	c.2284C>T	c.(2284-2286)CGC>TGC	p.R762C	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	762					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CGGGGCGCGCGGATGCCGTCC	0.791000													4	12					0	0	0.000602	0	0	
PREX2	80243	broad.mit.edu	37	8	69012014	69012014	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:69012014A>C	uc003xxv.1	+	23	2678	c.2651A>C	c.(2650-2652)AAA>ACA	p.K884T	PREX2_uc003xxu.1_Missense_Mutation_p.K884T|PREX2_uc011lez.1_Missense_Mutation_p.K819T	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	884					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTTCAGAGTAAATTCAGTGCC	0.348000													8	88					0	0	0.006214	0	0	
OSR2	116039	broad.mit.edu	37	8	99961704	99961704	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:99961704A>C	uc003yir.2	+	2	1059	c.524A>C	c.(523-525)AAG>ACG	p.K175T	OSR2_uc010mbn.2_Missense_Mutation_p.K175T|OSR2_uc003yiq.2_Missense_Mutation_p.K175T|OSR2_uc011lgx.1_Missense_Mutation_p.K296T	NM_001142462	NP_001135934	Q8N2R0	OSR2_HUMAN	odd-skipped related 2 isoform a	175	C2H2-type 1.				bone morphogenesis|chondrocyte differentiation|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic leg joint morphogenesis|embryonic skeletal joint morphogenesis|eyelid development in camera-type eye|head development|mesonephros development|metanephros development|middle ear morphogenesis|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|osteoblast proliferation|palate development|positive regulation of bone mineralization|positive regulation of epithelial cell proliferation|positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|zinc ion binding	p.K175R(1)		central_nervous_system(1)	1	Breast(36;4.14e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.0136)			TTTATCTGCAAGTTTTGCGGC	0.522000													31	233					0	0	0.013726	0	0	
RIMS2	9699	broad.mit.edu	37	8	104898096	104898096	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:104898096T>G	uc003yls.2	+	2	844	c.603T>G	c.(601-603)TCT>TCG	p.S201S	RIMS2_uc003ylp.2_Silent_p.S423S|RIMS2_uc003ylw.2_Silent_p.S231S|RIMS2_uc003ylq.2_Silent_p.S231S|RIMS2_uc003ylr.2_Silent_p.S231S	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	454					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding	p.S231S(1)		ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GACCAAGTTCTTATGCACAAA	0.478000										HNSCC(12;0.0054)			16	57					0	0	0.006122	0	0	
ZFPM2	23414	broad.mit.edu	37	8	106813816	106813816	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:106813816T>G	uc003ymd.2	+	8	1529	c.1506T>G	c.(1504-1506)TCT>TCG	p.S502S	ZFPM2_uc011lhs.1_Silent_p.S233S	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	502					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTCAGTTTTCTTTCCCCCAAG	0.493000													37	191					0	0	0.006230	0	0	
OXR1	55074	broad.mit.edu	37	8	107718983	107718983	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:107718983A>C	uc011lht.1	+	8	1336	c.1237A>C	c.(1237-1239)ACT>CCT	p.T413P	OXR1_uc003ymf.2_Missense_Mutation_p.T412P|OXR1_uc011lhu.1_Missense_Mutation_p.T405P|OXR1_uc010mcg.2_Intron|OXR1_uc010mch.2_Missense_Mutation_p.T110P|OXR1_uc003ymg.1_Missense_Mutation_p.T345P|OXR1_uc003ymi.1_Missense_Mutation_p.T324P	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	413					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			ATGTCATAAAACTGATTTAAA	0.348000													12	64					0	0	0.003163	0	0	
SNTB1	6641	broad.mit.edu	37	8	121823876	121823876	+	Silent	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:121823876T>G	uc010mdg.2	-	1	434	c.208A>C	c.(208-210)AGG>CGG	p.R70R	SNTB1_uc003ype.2_Silent_p.R70R	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	70	PH 1.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			ccggcgccccTGCAGAACGAG	0.448000													7	21					0	0	0.001984	0	0	
TG	7038	broad.mit.edu	37	8	133953600	133953600	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:133953600A>C	uc003ytw.2	+	26	5087	c.5046A>C	c.(5044-5046)CAA>CAC	p.Q1682H	TG_uc010mdw.2_Missense_Mutation_p.Q441H|TG_uc011ljb.1_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1682	Type IIIA.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CCCCAGGCCAAGGATCCACCA	0.458000													25	157					0	0	0.005443	0	0	
TG	7038	broad.mit.edu	37	8	133961049	133961049	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:133961049A>C	uc003ytw.2	+	27	5303	c.5262A>C	c.(5260-5262)TCA>TCC	p.S1754S	TG_uc010mdw.2_Silent_p.S513S|TG_uc011ljb.1_Silent_p.S123S	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1754	Type IIIB.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TGCTGAGCTCACCCAGTGTCC	0.527000													21	188					0	0	0.014323	0	0	
PLEC	5339	broad.mit.edu	37	8	144991805	144991805	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:144991805G>T	uc003zaf.1	-	32	12765	c.12595C>A	c.(12595-12597)CCC>ACC	p.P4199T	PLEC_uc003zab.1_Missense_Mutation_p.P4062T|PLEC_uc003zac.1_Missense_Mutation_p.P4066T|PLEC_uc003zad.2_Missense_Mutation_p.P4062T|PLEC_uc003zae.1_Missense_Mutation_p.P4030T|PLEC_uc003zag.1_Missense_Mutation_p.P4040T|PLEC_uc003zah.2_Missense_Mutation_p.P4048T|PLEC_uc003zaj.2_Missense_Mutation_p.P4089T	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	4199	Plectin 25.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						ACCTCCACGGGCAGCCGGTGG	0.627000													9	54					2.17888e-05	2.22098e-05	0.006214	1	0	
PLEC	5339	broad.mit.edu	37	8	144997653	144997653	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:144997653C>T	uc003zaf.1	-	31	7025	c.6855G>A	c.(6853-6855)CGG>CGA	p.R2285R	PLEC_uc003zab.1_Silent_p.R2148R|PLEC_uc003zac.1_Silent_p.R2152R|PLEC_uc003zad.2_Silent_p.R2148R|PLEC_uc003zae.1_Silent_p.R2116R|PLEC_uc003zag.1_Silent_p.R2126R|PLEC_uc003zah.2_Silent_p.R2134R|PLEC_uc003zaj.2_Silent_p.R2175R	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2285	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCTGTGCCCGCCGCGCCGCCT	0.687000													3	14					0	0	0.009096	0	0	
EXOSC4	54512	broad.mit.edu	37	8	145135310	145135310	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr8:145135310G>C	uc003zau.2	+	3	654	c.544G>C	c.(544-546)GGC>CGC	p.G182R	GPAA1_uc003zav.1_5'Flank|GPAA1_uc003zaw.1_5'Flank|GPAA1_uc003zax.2_5'Flank	NM_019037	NP_061910	Q9NPD3	EXOS4_HUMAN	exosome component 4	182					DNA deamination|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear mRNA surveillance|positive regulation of cell growth	cytosol|exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.48e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AGCAGCTGGTGGCCCCCAGCT	0.652000													5	71					0	0	0.001168	0	0	
C9orf93	203238	broad.mit.edu	37	9	15779060	15779060	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:15779060C>T	uc003zmd.2	+	20	3308	c.2993C>T	c.(2992-2994)ACA>ATA	p.T998I	C9orf93_uc003zme.2_Missense_Mutation_p.T913I|C9orf93_uc011lmu.1_Missense_Mutation_p.T1006I|C9orf93_uc003zmf.1_Missense_Mutation_p.T306I	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	998	Potential.										0				GBM - Glioblastoma multiforme(50;4.84e-07)		TTAGAGGTCACAGAATTCAAA	0.413000													9	29					0	0	0.004482	0	0	
Unknown	0	broad.mit.edu	37	9	21278505	21278505	+	RNA	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:21278505T>G	uc003zou.1	-	1		c.58A>C								Messenger RNA for human leukocyte (alpha) interferon.																		GTCAGGAGTATGAAGGCCCTC	0.483000													8	21					0	0	0.003080	0	0	
TRPM3	80036	broad.mit.edu	37	9	73205969	73205969	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:73205969T>G	uc004aid.2	-	21	3409	c.3165A>C	c.(3163-3165)GAA>GAC	p.E1055D	TRPM3_uc004ahu.2_Missense_Mutation_p.E885D|TRPM3_uc004ahv.2_Missense_Mutation_p.E857D|TRPM3_uc004ahw.2_Missense_Mutation_p.E927D|TRPM3_uc004ahx.2_Missense_Mutation_p.E914D|TRPM3_uc004ahy.2_Missense_Mutation_p.E917D|TRPM3_uc004ahz.2_Missense_Mutation_p.E904D|TRPM3_uc004aia.2_Missense_Mutation_p.E902D|TRPM3_uc004aib.2_Missense_Mutation_p.E892D|TRPM3_uc004aic.2_Missense_Mutation_p.E1055D	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1080	Extracellular (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						CCGCAAACACTTCCCCATAAA	0.423000													19	107					0	0	0.004656	0	0	
COL15A1	1306	broad.mit.edu	37	9	101818614	101818614	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:101818614T>G	uc004azb.1	+	35	3471	c.3265T>G	c.(3265-3267)TTT>GTT	p.F1089V		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1089	Triple-helical region 8 (COL8).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GCCACCTGGCTTTGGAAGACC	0.627000													24	76					0	0	0.014323	0	0	
INVS	27130	broad.mit.edu	37	9	103002501	103002501	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:103002501C>A	uc004bap.1	+	6	987	c.775C>A	c.(775-777)CTG>ATG	p.L259M	INVS_uc010mta.1_Missense_Mutation_p.L163M|INVS_uc011lve.1_Missense_Mutation_p.L163M|INVS_uc004bao.1_Missense_Mutation_p.L259M|INVS_uc004baq.1_Missense_Mutation_p.L163M|INVS_uc004bar.1_Missense_Mutation_p.L163M|INVS_uc010mtb.1_Translation_Start_Site	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	259	ANK 8.				negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				TCGAACCCCACTGCACTGGGC	0.413000													9	61					1.76689e-08	1.82305e-08	0.006214	1	0	
GRIN3A	116443	broad.mit.edu	37	9	104390538	104390538	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:104390538T>C	uc004bbp.1	-	4	3099	c.2498A>G	c.(2497-2499)AAG>AGG	p.K833R	GRIN3A_uc004bbq.1_Missense_Mutation_p.K833R	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	833	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TGACACTCACTTCAGATACTC	0.398000													8	56					0	0	0.004482	0	0	
C9orf43	257169	broad.mit.edu	37	9	116185755	116185755	+	Silent	SNP	G	A	A	rs141883275	by1000genomes	TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:116185755G>A	uc004bho.3	+	7	1029	c.633G>A	c.(631-633)GCG>GCA	p.A211A	C9orf43_uc004bhp.2_Silent_p.A211A	NM_152786	NP_689999	Q8TAL5	CI043_HUMAN	hypothetical protein LOC257169	211											0						AATCCGAAGCGTTACCTCAGG	0.502000													17	65					0	0	0.010504	0	0	
TRIM32	22954	broad.mit.edu	37	9	119461292	119461292	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:119461292C>T	uc004bjx.2	+	2	1429	c.1271C>T	c.(1270-1272)GCA>GTA	p.A424V	ASTN2_uc004bjr.1_Intron|ASTN2_uc004bjs.1_Intron|ASTN2_uc004bjt.1_Intron|TRIM32_uc004bjw.2_Missense_Mutation_p.A424V	NM_001099679	NP_001093149	Q13049	TRI32_HUMAN	tripartite motif-containing 32	424	NHL 2.				fat cell differentiation|innate immune response|negative regulation of apoptosis|negative regulation of fibroblast proliferation|positive regulation of cell cycle|positive regulation of cell growth|positive regulation of cell migration|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein catabolic process|positive regulation of proteolysis|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to tumor necrosis factor|response to UV	nucleus	myosin binding|protein self-association|RNA binding|Tat protein binding|transcription coactivator activity|translation initiation factor binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(2)|kidney(1)	3						TTCCTTGGGGCAGATCTACCC	0.493000									Bardet-Biedl_syndrome				32	169					0	0	0.012213	0	0	
OR1N2	138882	broad.mit.edu	37	9	125315533	125315533	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:125315533T>C	uc011lyx.1	+	1	85	c.85T>C	c.(85-87)TTC>CTC	p.F29L		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	29	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						TGTTTCAGACTTCCTCCTTCT	0.488000													10	63					0	0	0.006214	0	0	
RALGPS1	9649	broad.mit.edu	37	9	129981048	129981048	+	Silent	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:129981048A>G	uc004bqo.1	+	19	1941	c.1674A>G	c.(1672-1674)TAA>TAG	p.*558*		NM_014636	NP_055451	Q5JS13	RGPS1_HUMAN	Ral GEF with PH domain and SH3 binding motif 1	558					small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity			ovary(1)	1						CATTTGAGTAAGTCTCTGCAG	0.552000													37	204					0	0	0.006999	0	0	
C9orf106	414318	broad.mit.edu	37	9	132084374	132084374	+	Silent	SNP	T	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:132084374T>C	uc004bxs.2	+	2	335	c.282T>C	c.(280-282)CAT>CAC	p.H94H		NM_001012715	NP_001012733	Q8NAJ2	CI106_HUMAN	hypothetical protein LOC414318	94											0		Ovarian(14;0.00556)|Medulloblastoma(224;0.235)				gtgagctccatgagggcagga	0.139000													2	8					0	0	0.004672	0	0	
COL5A1	1289	broad.mit.edu	37	9	137713968	137713968	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:137713968T>G	uc004cfe.2	+	59	4962	c.4580T>G	c.(4579-4581)ATT>AGT	p.I1527S	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1527	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TCTGGCCCGATTGGGCCTCCT	0.622000													19	107					0	0	0.002780	0	0	
SNAPC4	6621	broad.mit.edu	37	9	139273391	139273391	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr9:139273391G>C	uc004chh.2	-	21	2897	c.2888C>G	c.(2887-2889)CCT>CGT	p.P963R		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	963	Pro-rich.				snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		AGAAGTGCCAGGTTTGGCTGC	0.667000													27	22					0	0	0.004656	0	0	
MAGEB4	4115	broad.mit.edu	37	X	30260841	30260841	+	Silent	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:30260841A>C	uc004dcb.2	+	1	673	c.589A>C	c.(589-591)AGG>CGG	p.R197R	MAGEB1_uc004dcc.2_5'Flank|MAGEB1_uc004dcd.2_5'Flank	NM_002367	NP_002358	O15481	MAGB4_HUMAN	melanoma antigen family B, 4	197	MAGE.									ovary(1)	1						GACCCTTCCAAGGAATGGGCT	0.522000													17	40					0	0	0.006122	0	0	
FAM47A	158724	broad.mit.edu	37	X	34148536	34148536	+	Silent	SNP	A	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:34148536A>G	uc004ddg.2	-	1	1893	c.1860T>C	c.(1858-1860)GCT>GCC	p.A620A		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	620										ovary(4)|central_nervous_system(1)	5						ATTCTTCATCAGCTCCCAGGT	0.438000													16	43					0	0	0.006122	0	0	
PAGE3	139793	broad.mit.edu	37	X	55289738	55289738	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:55289738T>G	uc004dul.2	-	3	448	c.139A>C	c.(139-141)AGT>CGT	p.S47R	PAGE3_uc011mon.1_RNA	NM_001017931	NP_001017931			P antigen family, member 3 (prostate												0						TAATCCTGACTTTCAATTGGT	0.473000													5	28					0	0	0.000602	0	0	
FAM133A	286499	broad.mit.edu	37	X	92964511	92964511	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:92964511A>C	uc004efr.1	+	4	406	c.93A>C	c.(91-93)CAA>CAC	p.Q31H		NM_173698	NP_775969	Q8N9E0	F133A_HUMAN	hypothetical protein LOC286499	31											0						CAACAATCCAAGATTATCTAA	0.418000													5	34					0	0	0.001168	0	0	
PCDH19	57526	broad.mit.edu	37	X	99662240	99662240	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:99662240G>T	uc010nmz.2	-	1	3032	c.1356C>A	c.(1354-1356)CAC>CAA	p.H452Q	PCDH19_uc004efw.3_Missense_Mutation_p.H452Q|PCDH19_uc004efx.3_Missense_Mutation_p.H452Q	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	452	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						GCTTGGAAAAGTGCGGGTGGT	0.577000													9	79					2.17888e-05	2.22098e-05	0.006214	1	0	
GUCY2F	2986	broad.mit.edu	37	X	108684663	108684663	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:108684663T>G	uc004eod.3	-	7	1894	c.1618A>C	c.(1618-1620)AGT>CGT	p.S540R	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	540	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						GACCTCCCACTTTGGACCTCT	0.433000													63	232					0	0	0.014410	0	0	
TRPC5	7224	broad.mit.edu	37	X	111155770	111155770	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:111155770T>G	uc004epl.1	-	3	1568	c.649A>C	c.(649-651)ATC>CTC	p.I217L	TRPC5_uc004epm.1_Missense_Mutation_p.I217L	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	217	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						GCAGTTAGGATGGGGTCCTCA	0.552000													32	142					0	0	0.013726	0	0	
SLITRK2	84631	broad.mit.edu	37	X	144906221	144906221	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:144906221G>C	uc004fcd.2	+	5	3268	c.2278G>C	c.(2278-2280)GCT>CCT	p.A760P	SLITRK2_uc010nsp.2_Missense_Mutation_p.A760P|SLITRK2_uc010nso.2_Missense_Mutation_p.A760P|SLITRK2_uc011mwq.1_Missense_Mutation_p.A760P|SLITRK2_uc011mwr.1_Missense_Mutation_p.A760P|SLITRK2_uc011mws.1_Missense_Mutation_p.A760P|SLITRK2_uc004fcg.2_Missense_Mutation_p.A760P|SLITRK2_uc011mwt.1_Missense_Mutation_p.A760P|CXorf1_uc004fch.2_5'Flank	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	760	Cytoplasmic (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					TCAAAATATTGCTGAGCGAGT	0.488000													14	157					0	0	0.001855	0	0	
PASD1	139135	broad.mit.edu	37	X	150840247	150840247	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:150840247A>C	uc004fev.3	+	13	1765	c.1433A>C	c.(1432-1434)AAC>ACC	p.N478T		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	478						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GTTGCCTTCAACCAGGTATGG	0.453000													15	53					0	0	0.003163	0	0	
RPL10	6134	broad.mit.edu	37	X	153629051	153629051	+	Silent	SNP	C	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chrX:153629051C>T	uc004fkm.2	+	7	689	c.501C>T	c.(499-501)ATC>ATT	p.I167I	uc010nuv.1_5'Flank|RPL10_uc004fko.2_Missense_Mutation_p.S113F|RPL10_uc004fkn.1_Silent_p.I167I|RPL10_uc004fkp.1_3'UTR|RPL10_uc004fkq.1_Intron|RPL10_uc004fkr.1_Intron	NM_006013	NP_006004	P27635	RL10_HUMAN	ribosomal protein L10	167					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|endoplasmic reticulum	structural constituent of ribosome				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AGATCCACATCTCAAAGAAGT	0.527000													20	41					0	0	0.008871	0	0	
SPTA1	6708	broad.mit.edu	37	1	158619716	158619716	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr1:158619716delA	uc001fst.1	-	25	3698	c.3499delT	c.(3499-3501)TCTfs	p.S1167fs		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1167	Spectrin 11.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTCTGCAAAGAACCCCAGCGG	0.463													23	45	---	---	---	---						.
PRKCH	5583	broad.mit.edu	37	14	61789032	61789033	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-6458-01A-11D-1800-08	TCGA-BR-6458-11A-01D-1800-08									Somatic	Phase_I	Capture				Illumina GAIIx	9b302ae7-9c9a-487d-89d3-a56a33731aac	33c9ffb8-f68f-45cb-b4d5-8ab431791fae	g.chr14:61789032_61789033insT	uc001xfn.2	+	1	518_519	c.213_214insT	c.(211-216)GAGTTTfs	p.E71fs	PRKCH_uc010tsa.1_Intron|uc001xfm.2_Intron	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	71_72	C2.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		ACAACGAGGAGTTTTGCGCTAA	0.624													17	36	---	---	---	---						.
