Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
KLHL17	339451	broad.mit.edu	37	1	899373	899373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:899373C>T	uc001aca.1	+	9	1536	c.1429C>T	c.(1429-1431)CGA>TGA	p.R477*	KLHL17_uc001acc.1_RNA|PLEKHN1_uc001acd.2_5'Flank|PLEKHN1_uc001acf.2_5'Flank|PLEKHN1_uc001ace.2_5'Flank	NM_198317	NP_938073	Q6TDP4	KLH17_HUMAN	kelch-like 17	477	Interaction with F-actin (By similarity).|Kelch 3.				actin cytoskeleton organization	actin cytoskeleton|cell junction|postsynaptic density|postsynaptic membrane	protein complex scaffold				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.52e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.59e-23)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000469)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GCGCTATGTGCGAGTGGCCAC	0.687													46	84					0	0	1	0	0	
AGRN	375790	broad.mit.edu	37	1	981387	981387	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:981387C>T	uc001ack.1	+	16	2774	c.2724C>T	c.(2722-2724)TTC>TTT	p.F908F		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	908					axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		GCTGTGAGTTCGGTGCGCGGT	0.657													26	44					0	0	1	0	0	
CCNL2	81669	broad.mit.edu	37	1	1326209	1326209	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:1326209G>A	uc001afi.2	-	6	728	c.696C>T	c.(694-696)TTC>TTT	p.F232F	CCNL2_uc010nym.1_RNA|CCNL2_uc001aff.1_Silent_p.F10F|CCNL2_uc001afg.1_Silent_p.F10F|CCNL2_uc001afh.2_3'UTR|CCNL2_uc001afj.2_3'UTR|CCNL2_uc001afk.2_3'UTR	NM_030937	NP_112199	Q96S94	CCNL2_HUMAN	cyclin L2 isoform A	232	Cyclin-like 2.				regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding			ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.03e-36)|OV - Ovarian serous cystadenocarcinoma(86;4.17e-22)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.0023)|BRCA - Breast invasive adenocarcinoma(365;0.00465)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.146)		GGAACCGCACGAAGACGTCGG	0.557													36	83					0	0	1	0	0	
KIAA1751	85452	broad.mit.edu	37	1	1903425	1903425	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:1903425C>T	uc001aim.1	-	9	1038	c.882G>A	c.(880-882)GCG>GCA	p.A294A	KIAA1751_uc009vkz.1_Silent_p.A294A	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	294										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		CTACCCGGTTCGCGGAGATGC	0.677													18	36					0	0	1	0	0	
PRDM16	63976	broad.mit.edu	37	1	3319387	3319387	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:3319387G>A	uc001akf.2	+	6	789	c.709G>A	c.(709-711)GAA>AAA	p.E237K	PRDM16_uc001akc.2_Missense_Mutation_p.E237K|PRDM16_uc001akd.2_Missense_Mutation_p.E237K|PRDM16_uc001ake.2_Missense_Mutation_p.E237K|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	237	C2H2-type 1; atypical.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CGAGTGTGACGAACTCTTCCA	0.617			T	EVI1	MDS|AML								19	41					0	0	1	0	0	
PRDM16	63976	broad.mit.edu	37	1	3328013	3328013	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:3328013G>A	uc001akf.2	+	9	1332	c.1252G>A	c.(1252-1254)GAC>AAC	p.D418N	PRDM16_uc001akc.2_Missense_Mutation_p.D418N|PRDM16_uc001akd.2_Missense_Mutation_p.D418N|PRDM16_uc001ake.2_Missense_Mutation_p.D418N|PRDM16_uc009vlh.2_Missense_Mutation_p.D119N	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	418					brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GATGCACGCCGACTGCCGCAC	0.567			T	EVI1	MDS|AML								26	45					0	0	1	0	0	
MEGF6	1953	broad.mit.edu	37	1	3428235	3428235	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:3428235G>A	uc001akl.2	-	9	1220	c.993C>T	c.(991-993)ATC>ATT	p.I331I	MEGF6_uc001akk.2_Silent_p.I226I	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	331						extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		AGCTGTTCACGATTTCCATCT	0.627													19	43					0	0	1	0	0	
NOL9	79707	broad.mit.edu	37	1	6586025	6586025	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:6586025A>G	uc001ans.2	-	12	2017	c.1998T>C	c.(1996-1998)GAT>GAC	p.D666D	NOL9_uc010nzs.1_RNA	NM_024654	NP_078930	Q5SY16	NOL9_HUMAN	nucleolar protein 9	666					maturation of 5.8S rRNA	nucleolus	ATP binding|polynucleotide 5'-hydroxyl-kinase activity|RNA binding			skin(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;2.46e-35)|all_epithelial(116;1.41e-22)|all_lung(118;7.59e-07)|Lung NSC(185;4.28e-06)|Colorectal(325;4.52e-05)|Breast(487;0.000353)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.47e-07)|COAD - Colon adenocarcinoma(227;1.47e-05)|Kidney(185;5.27e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|BRCA - Breast invasive adenocarcinoma(365;0.00113)|STAD - Stomach adenocarcinoma(132;0.0017)|READ - Rectum adenocarcinoma(331;0.0649)		TAAAATTGTAATCCGTTGTGA	0.463													24	90					0	0	1	0	0	
TAS1R1	80835	broad.mit.edu	37	1	6634952	6634952	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:6634952G>T	uc001ant.2	+	3	760	c.760G>T	c.(760-762)GAG>TAG	p.E254*	TAS1R1_uc001anu.2_Intron|TAS1R1_uc001anv.2_Intron|TAS1R1_uc001anw.2_Nonsense_Mutation_p.E254*	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	254	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		GGTGGGCGATGAGAGGATGCA	0.617													37	36					1.69901e-12	1.88238e-12	1	1	0	
ZBTB48	3104	broad.mit.edu	37	1	6647651	6647651	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:6647651G>A	uc009vmc.1	+	7	1461	c.1338G>A	c.(1336-1338)TCG>TCA	p.S446S	ZBTB48_uc001anx.2_Silent_p.S446S|ZBTB48_uc009vmd.1_Silent_p.S446S|ZBTB48_uc001any.1_Silent_p.S84S	NM_005341	NP_005332	P10074	ZBT48_HUMAN	zinc finger and BTB domain containing 48	446	C2H2-type 6.					cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.35e-07)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(304;0.00109)|STAD - Stomach adenocarcinoma(132;0.017)|READ - Rectum adenocarcinoma(331;0.0642)		ACCGGGCCTCGAGCCGGAATG	0.617													15	59					0	0	1	0	0	
PHF13	148479	broad.mit.edu	37	1	6676920	6676920	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:6676920T>C	uc001aob.3	+	2	512	c.141_splice	c.e2+2	p.E47_splice		NM_153812	NP_722519	Q86YI8	PHF13_HUMAN	PHD finger protein 13						cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		CCGAAGGAGGTAATCTTCTGA	0.507													10	40					0	0	1	0	0	
CAMTA1	23261	broad.mit.edu	37	1	7725121	7725121	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:7725121C>T	uc001aoi.2	+	9	2721	c.2514C>T	c.(2512-2514)GGC>GGT	p.G838G		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	838					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		GCTCGGAGGGCGGGGCCAGCA	0.701													35	69					0	0	1	0	0	
CAMTA1	23261	broad.mit.edu	37	1	7806101	7806101	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:7806101G>T	uc001aoi.2	+	18	4774	c.4567G>T	c.(4567-4569)GAA>TAA	p.E1523*	CAMTA1_uc001aok.3_Nonsense_Mutation_p.E566*|CAMTA1_uc001aoj.2_Nonsense_Mutation_p.E479*|CAMTA1_uc009vmf.2_Nonsense_Mutation_p.E113*	NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	1523					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		TGAACAGAGAGAACTCTATGA	0.473													29	66					1.68575e-08	1.7923e-08	1	1	0	
PER3	8863	broad.mit.edu	37	1	7863754	7863754	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:7863754T>C	uc001aoo.2	+	9	1154	c.979T>C	c.(979-981)TTG>CTG	p.L327L	PER3_uc009vmg.1_Silent_p.L328L|PER3_uc009vmh.1_Silent_p.L328L|PER3_uc001aop.2_Silent_p.L328L|PER3_uc010nzw.1_Silent_p.L9L|PER3_uc001aon.2_Silent_p.L327L	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	327	PAS 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		TTATATAGTTTTGAAGTATGC	0.333													8	23					0	0	1	0	0	
PER3	8863	broad.mit.edu	37	1	7863904	7863904	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:7863904C>T	uc001aoo.2	+	9	1304	c.1129C>T	c.(1129-1131)CGA>TGA	p.R377*	PER3_uc009vmg.1_Nonsense_Mutation_p.R378*|PER3_uc009vmh.1_Nonsense_Mutation_p.R378*|PER3_uc001aop.2_Nonsense_Mutation_p.R378*|PER3_uc010nzw.1_Nonsense_Mutation_p.R59*|PER3_uc001aon.2_Nonsense_Mutation_p.R377*	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	377	PAC.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GCATAAAGTTCGAACGTAAGC	0.388													20	43					0	0	1	0	0	
UTS2	10911	broad.mit.edu	37	1	7907902	7907902	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:7907902C>A	uc001aor.2	-	4	340	c.299G>T	c.(298-300)AGT>ATT	p.S100I	UTS2_uc001aoq.2_Missense_Mutation_p.S100I|UTS2_uc001aos.2_Missense_Mutation_p.S115I	NM_006786	NP_006777	O95399	UTS2_HUMAN	urotensin 2 isoform b preproprotein	100					muscle contraction|regulation of blood pressure|synaptic transmission	extracellular space	hormone activity				0	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;1.38e-20)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.26e-71)|GBM - Glioblastoma multiforme(8;5.15e-36)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000386)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|STAD - Stomach adenocarcinoma(132;0.000951)|READ - Rectum adenocarcinoma(331;0.0642)		CAAAAGATGACTCAGTAAAAT	0.368													49	65					1.61004e-24	1.9345e-24	1	1	0	
TNFRSF9	3604	broad.mit.edu	37	1	7998864	7998864	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:7998864T>G	uc001aot.2	-	3	253	c.125A>C	c.(124-126)AAT>ACT	p.N42T		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	42	Extracellular (Potential).|TNFR-Cys 1.				induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity			large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		GCAAATCTGATTCCTGTTATT	0.433													31	69					0	0	1	0	0	
SLC2A7	155184	broad.mit.edu	37	1	9079302	9079302	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:9079302G>A	uc009vmo.1	-	4	402	c.402C>T	c.(400-402)ATC>ATT	p.I134I		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	134	Extracellular (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		GGGAAAAGACGATCAGCTCAA	0.582													14	41					0	0	1	0	0	
H6PD	9563	broad.mit.edu	37	1	9305498	9305498	+	Missense_Mutation	SNP	C	T	T	rs35668164		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:9305498C>T	uc001apt.2	+	2	778	c.505C>T	c.(505-507)CGG>TGG	p.R169W		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	169	Glucose 1-dehydrogenase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	CGCCTGGCTGCGGGTTGTCCT	0.597													26	103					0	0	1	0	0	
PIK3CD	5293	broad.mit.edu	37	1	9780235	9780235	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:9780235G>A	uc001aqb.3	+	11	1613	c.1405G>A	c.(1405-1407)GCT>ACT	p.A469T	PIK3CD_uc010oaf.1_Missense_Mutation_p.A469T|PIK3CD_uc001aqe.3_Missense_Mutation_p.A434T	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	469					phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		GGATAGCGCCGCTGCCCTGCT	0.672													17	53					0	0	1	0	0	
RBP7	116362	broad.mit.edu	37	1	10068312	10068312	+	Missense_Mutation	SNP	G	A	A	rs145127190	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:10068312G>A	uc001aqq.2	+	3	396	c.334G>A	c.(334-336)GAA>AAA	p.E112K	RBP7_uc009vms.2_RNA	NM_052960	NP_443192	Q96R05	RET7_HUMAN	retinol binding protein 7, cellular	112						cytoplasm	retinal binding|retinol binding|transporter activity				0		all_lung(284;0.000407)|Renal(390;0.000469)|Lung NSC(185;0.000577)|Colorectal(325;0.0062)|Breast(348;0.00686)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.5e-08)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;0.000249)|BRCA - Breast invasive adenocarcinoma(304;0.000302)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00856)|READ - Rectum adenocarcinoma(331;0.0419)	Vitamin A(DB00162)	CCATTGGATCGAAGGAGACAA	0.378													12	32					0	0	1	0	0	
KIF1B	23095	broad.mit.edu	37	1	10423363	10423363	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:10423363G>A	uc001aqx.3	+	41	4529	c.4327G>A	c.(4327-4329)GAA>AAA	p.E1443K	KIF1B_uc001aqw.3_Missense_Mutation_p.E1397K|KIF1B_uc001aqy.2_Missense_Mutation_p.E1417K|KIF1B_uc001aqz.2_Missense_Mutation_p.E1443K|KIF1B_uc001ara.2_Missense_Mutation_p.E1403K|KIF1B_uc001arb.2_Missense_Mutation_p.E1429K	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1443					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		TGGCATTTACGAACTCAGCTT	0.343													39	69					0	0	1	0	0	
PGD	5226	broad.mit.edu	37	1	10460491	10460491	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:10460491C>A	uc001arc.2	+	3	216	c.126C>A	c.(124-126)TTC>TTA	p.F42L	PGD_uc001ard.2_5'UTR|PGD_uc010oak.1_Missense_Mutation_p.F42L|PGD_uc010oal.1_Missense_Mutation_p.F29L	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	42					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		TTGATGATTTCTTGGCCAATG	0.502													33	59					4.3181e-19	5.06354e-19	1	1	0	
PGD	5226	broad.mit.edu	37	1	10473290	10473290	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:10473290G>A	uc001arc.2	+	8	916	c.826G>A	c.(826-828)GTA>ATA	p.V276I	PGD_uc001ard.2_Missense_Mutation_p.V196I|PGD_uc010oak.1_Missense_Mutation_p.V254I|PGD_uc010oal.1_Missense_Mutation_p.V263I	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	276					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		GGAATACGGCGTACCCGTCAC	0.542													16	38					0	0	1	0	0	
PEX14	5195	broad.mit.edu	37	1	10687419	10687419	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:10687419C>T	uc001arn.2	+	8	697	c.676C>T	c.(676-678)CGG>TGG	p.R226W	PEX14_uc009vmv.2_Missense_Mutation_p.R162W|PEX14_uc010oam.1_Missense_Mutation_p.R162W|PEX14_uc010oan.1_Missense_Mutation_p.R183W|PEX14_uc009vmw.2_Missense_Mutation_p.R162W	NM_004565	NP_004556	O75381	PEX14_HUMAN	peroxisomal biogenesis factor 14	226					negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|protein homooligomerization|protein import into peroxisome matrix|transmembrane transport	integral to membrane|nucleus|peroxisomal membrane|protein complex	protein N-terminus binding|transcription corepressor activity			breast(1)	1	Ovarian(185;0.203)	all_lung(284;6.02e-06)|Lung NSC(185;9.62e-06)|Renal(390;0.000147)|Breast(348;0.000932)|Colorectal(325;0.00215)|Hepatocellular(190;0.00913)|Ovarian(437;0.023)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0292)|Colorectal(212;9.13e-08)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000482)|Kidney(185;0.00174)|KIRC - Kidney renal clear cell carcinoma(229;0.00457)|STAD - Stomach adenocarcinoma(132;0.0249)|READ - Rectum adenocarcinoma(331;0.0419)		TCTTTTAAATCGGTAGGAGGG	0.567													16	42					0	0	1	0	0	
MTOR	2475	broad.mit.edu	37	1	11169375	11169375	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:11169375A>C	uc001asd.2	-	56	7621	c.7500T>G	c.(7498-7500)ATT>ATG	p.I2500M	MTOR_uc001asc.2_Missense_Mutation_p.I705M	NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	2500	PI3K/PI4K.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CCCTGTTAATAATCTGGATAG	0.408													42	90					0	0	1	0	0	
MTOR	2475	broad.mit.edu	37	1	11298651	11298651	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:11298651G>A	uc001asd.2	-	12	1931	c.1810C>T	c.(1810-1812)CGC>TGC	p.R604C		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	604					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GCACAGTGGCGAACAAATTGG	0.537													9	19					0	0	1	0	0	
PTCHD2	57540	broad.mit.edu	37	1	11580781	11580781	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:11580781C>T	uc001ash.3	+	10	2376	c.2238C>T	c.(2236-2238)TTC>TTT	p.F746F	PTCHD2_uc001asi.1_Silent_p.F746F	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	746	Helical; (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CCCTGGTGTTCGCCAGCCGGC	0.662													13	26					0	0	1	0	0	
PTCHD2	57540	broad.mit.edu	37	1	11586750	11586750	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:11586750G>A	uc001ash.3	+	13	2794	c.2656G>A	c.(2656-2658)GCT>ACT	p.A886T	PTCHD2_uc001asi.1_Missense_Mutation_p.A886T	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	886	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GAAGCTGACCGCTTGTATGTC	0.587													78	133					0	0	1	0	0	
C1orf187	374946	broad.mit.edu	37	1	11772432	11772432	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:11772432G>A	uc001asr.1	+	5	933	c.793G>A	c.(793-795)GAA>AAA	p.E265K		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	265					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		TGATGGTAACGAAACATCACC	0.567													39	84					0	0	1	0	0	
MTHFR	4524	broad.mit.edu	37	1	11851348	11851348	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:11851348C>T	uc001atc.1	-	11	1852	c.1668G>A	c.(1666-1668)CCG>CCA	p.P556P	MTHFR_uc001atb.1_Silent_p.P579P	NM_005957	NP_005948	P42898	MTHR_HUMAN	5,10-methylenetetrahydrofolate reductase	556					blood circulation|folic acid metabolic process	cytosol	methylenetetrahydrofolate reductase (NADPH) activity|protein binding				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)	Benazepril(DB00542)|Cyanocobalamin(DB00115)|Folic Acid(DB00158)|L-Methionine(DB00134)|Menadione(DB00170)|Methotrexate(DB00563)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|Raltitrexed(DB00293)|Riboflavin(DB00140)|S-Adenosylmethionine(DB00118)|Tetrahydrofolic acid(DB00116)	TGACAGCATTCGGCTGCAGTT	0.587													13	34					0	0	1	0	0	
PLOD1	5351	broad.mit.edu	37	1	12024810	12024810	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12024810G>A	uc001atm.2	+	13	1529	c.1438G>A	c.(1438-1440)GAC>AAC	p.D480N	PLOD1_uc010obb.1_Missense_Mutation_p.D527N	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	480					epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	GCTGGACCCCGACATGGCCTT	0.612													43	83					0	0	1	0	0	
VPS13D	55187	broad.mit.edu	37	1	12328891	12328891	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12328891A>C	uc001atv.2	+	16	2071	c.1930A>C	c.(1930-1932)AAA>CAA	p.K644Q	VPS13D_uc001atw.2_Missense_Mutation_p.K644Q	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	644					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GGCCATTAAAAAAGTAGCAGA	0.398													54	80					0	0	1	0	0	
VPS13D	55187	broad.mit.edu	37	1	12337735	12337735	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12337735G>T	uc001atv.2	+	19	4231	c.4090G>T	c.(4090-4092)GAC>TAC	p.D1364Y	VPS13D_uc001atw.2_Missense_Mutation_p.D1364Y|VPS13D_uc001atx.2_Missense_Mutation_p.D552Y	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1364					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		ATATGGGTTTGACCTAGCTTC	0.433													46	76					5.2432e-18	6.11334e-18	1	1	0	
VPS13D	55187	broad.mit.edu	37	1	12395786	12395786	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12395786C>T	uc001atv.2	+	39	8594	c.8453C>T	c.(8452-8454)TCG>TTG	p.S2818L	VPS13D_uc001atw.2_Missense_Mutation_p.S2818L|VPS13D_uc001atx.2_Missense_Mutation_p.S2006L|VPS13D_uc001aty.1_Missense_Mutation_p.S556L	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2818					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		ACCAAGGAATCGTGGATGGCA	0.408													35	71					0	0	1	0	0	
VPS13D	55187	broad.mit.edu	37	1	12433865	12433865	+	Silent	SNP	C	T	T	rs145410334		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12433865C>T	uc001atv.2	+	55	11010	c.10869C>T	c.(10867-10869)CTC>CTT	p.L3623L	VPS13D_uc001atw.2_Silent_p.L3598L|VPS13D_uc001atx.2_Silent_p.L2810L|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3622					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		GTGCGGAGCTCGTTTTGGATG	0.323													20	31					0	0	1	0	0	
AADACL4	343066	broad.mit.edu	37	1	12711190	12711190	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12711190C>T	uc001auf.2	+	2	217	c.217C>T	c.(217-219)CGT>TGT	p.R73C		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	73	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		CAAATTTATTCGTTTTTTACA	0.458													46	59					0	0	1	0	0	
PRAMEF12	390999	broad.mit.edu	37	1	12837573	12837573	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12837573G>T	uc001aui.2	+	3	1310	c.1283G>T	c.(1282-1284)AGA>ATA	p.R428I		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	428										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGCTGGGGAAGATTTTCTCAA	0.567													49	96					8.04919e-23	9.61489e-23	1	1	0	
LOC649330	649330	broad.mit.edu	37	1	12907513	12907513	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12907513T>C	uc009vno.2	-	1	725	c.630A>G	c.(628-630)AAA>AAG	p.K210K	HNRNPCL1_uc010obf.1_Silent_p.K210K	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	210							nucleic acid binding|nucleotide binding				0						CTACCTCTTGTTTGCTCTGTT	0.448													63	170					0	0	1	0	0	
LOC649330	649330	broad.mit.edu	37	1	12907715	12907715	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12907715G>A	uc009vno.2	-	1	523	c.428C>T	c.(427-429)TCG>TTG	p.S143L	HNRNPCL1_uc010obf.1_Missense_Mutation_p.S143L	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	143							nucleic acid binding|nucleotide binding				0						TTGACGTTTCGAGGGCACTAC	0.483													121	145					0	0	1	0	0	
LOC649330	649330	broad.mit.edu	37	1	12907963	12907963	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12907963C>A	uc009vno.2	-	1	275	c.180G>T	c.(178-180)GAG>GAT	p.E60D	HNRNPCL1_uc010obf.1_Missense_Mutation_p.E60D	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	60							nucleic acid binding|nucleotide binding				0						GGGCATTTTTCTCCTTATCAT	0.473													20	158					1.64293e-13	1.8379e-13	1	1	0	
LOC649330	649330	broad.mit.edu	37	1	12908038	12908038	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12908038C>T	uc009vno.2	-	1	200	c.105G>A	c.(103-105)GCG>GCA	p.A35A	HNRNPCL1_uc010obf.1_Silent_p.A35A	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	35							nucleic acid binding|nucleotide binding				0						TGGAAAAGATCGCCTCCACAT	0.473													20	242					0	0	1	0	0	
PRAMEF2	65122	broad.mit.edu	37	1	12920008	12920008	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:12920008G>T	uc001aum.1	+	3	835	c.748G>T	c.(748-750)GAA>TAA	p.E250*		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	250											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GTCAGATAATGAACTCGAGGG	0.438													64	180					2.2129e-31	2.71135e-31	1	1	0	
PRAMEF6	440561	broad.mit.edu	37	1	13001306	13001306	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:13001306A>C	uc001auq.2	-	3	463	c.377T>G	c.(376-378)CTC>CGC	p.L126R	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	126											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTTGGCATTGAGGAAGCACCC	0.498													114	437					0	0	1	0	0	
PDPN	10630	broad.mit.edu	37	1	13936969	13936969	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:13936969C>T	uc001avd.2	+	3	566	c.517C>T	c.(517-519)CCA>TCA	p.P173S	PDPN_uc001avc.2_Missense_Mutation_p.P173S|PDPN_uc009vob.2_Missense_Mutation_p.P55S|PDPN_uc009voc.2_Missense_Mutation_p.P55S|PDPN_uc001ave.2_Missense_Mutation_p.P55S|PDPN_uc001avf.2_Missense_Mutation_p.P55S	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	97	Extracellular (Potential).				cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		AGAACAAAGTCCAAGCGCCAC	0.512													33	91					0	0	1	0	0	
PDPN	10630	broad.mit.edu	37	1	13940804	13940804	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:13940804C>T	uc001avd.2	+	5	657	c.608C>T	c.(607-609)TCA>TTA	p.S203L	PDPN_uc001avc.2_Missense_Mutation_p.S203L|PDPN_uc009vob.2_Missense_Mutation_p.S85L|PDPN_uc009voc.2_Missense_Mutation_p.S85L|PDPN_uc001ave.2_Missense_Mutation_p.S85L|PDPN_uc001avf.2_Missense_Mutation_p.S85L	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	127	Extracellular (Potential).				cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		GATGGTTTGTCAACAGTGACC	0.423													29	55					0	0	1	0	0	
PRDM2	7799	broad.mit.edu	37	1	14106701	14106701	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:14106701A>C	uc001avi.2	+	8	3267	c.2411A>C	c.(2410-2412)AAA>ACA	p.K804T	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.K804T|PRDM2_uc001avj.2_Intron|PRDM2_uc009vod.1_Missense_Mutation_p.K561T|PRDM2_uc001avk.2_Missense_Mutation_p.K603T|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	804						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		GATGAATATAAAATGTCTAAA	0.448													25	56					0	0	1	0	0	
PRDM2	7799	broad.mit.edu	37	1	14108921	14108921	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:14108921T>C	uc001avi.2	+	8	5487	c.4631T>C	c.(4630-4632)GTC>GCC	p.V1544A	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.V1544A|PRDM2_uc001avj.2_Intron|PRDM2_uc001avk.2_Missense_Mutation_p.V1343A|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	1544						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		CCCACCCAAGTCCCACTTCCC	0.547													48	72					0	0	1	0	0	
KAZ	23254	broad.mit.edu	37	1	15441017	15441017	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:15441017C>T	uc001avm.3	+	15	2495	c.2214C>T	c.(2212-2214)TTC>TTT	p.F738F	C1orf126_uc001avv.3_RNA|C1orf126_uc009voh.2_RNA|KAZ_uc001avs.3_Silent_p.F185F	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	738					keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						ATCCCGATTTCCATGATGACT	0.507													5	16					0	0	1	0	0	
TMEM51	55092	broad.mit.edu	37	1	15541819	15541819	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:15541819T>G	uc001avw.3	+	3	755	c.236T>G	c.(235-237)CTT>CGT	p.L79R	TMEM51_uc010obk.1_Missense_Mutation_p.L79R|TMEM51_uc001avz.2_Missense_Mutation_p.L79R|TMEM51_uc001avy.2_Missense_Mutation_p.L79R|TMEM51_uc001avx.2_Missense_Mutation_p.L79R	NM_001136216	NP_001129688	Q9NW97	TMM51_HUMAN	transmembrane protein 51	79	Helical; (Potential).					integral to membrane					0		Renal(390;0.00145)|Breast(348;0.00186)|Colorectal(325;0.00215)|all_lung(284;0.00459)|Lung NSC(340;0.0104)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;2.07e-06)|COAD - Colon adenocarcinoma(227;7.14e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000175)|KIRC - Kidney renal clear cell carcinoma(229;0.00141)|STAD - Stomach adenocarcinoma(313;0.00644)|READ - Rectum adenocarcinoma(331;0.0751)		CTGCTGCTGCTTTCTATCTGC	0.642													37	97					0	0	1	0	0	
CELA2B	51032	broad.mit.edu	37	1	15809762	15809762	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:15809762C>T	uc001awl.2	+	5	385	c.360C>T	c.(358-360)AAC>AAT	p.N120N		NM_015849	NP_056933	P08218	CEL2B_HUMAN	elastase 2B preproprotein	120	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						CACCCAGGAACGACATTGCCC	0.587													23	111					0	0	1	0	0	
DNAJC16	23341	broad.mit.edu	37	1	15874828	15874828	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:15874828A>G	uc001aws.2	+	7	1048	c.928A>G	c.(928-930)ACG>GCG	p.T310A	DNAJC16_uc001awr.1_Missense_Mutation_p.T310A|DNAJC16_uc001awt.2_5'UTR	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	310	Cytoplasmic (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		TTTGAGAGGGACGGAAGAGAT	0.403													16	53					0	0	1	0	0	
DDI2	84301	broad.mit.edu	37	1	15964914	15964914	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:15964914G>A	uc001awx.1	+	5	841	c.745G>A	c.(745-747)GCC>ACC	p.A249T	DDI2_uc009voj.1_Intron	NM_032341	NP_115717	Q5TDH0	DDI2_HUMAN	DNA-damage inducible protein 2	249					proteolysis		aspartic-type endopeptidase activity				0		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00327)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.03e-07)|COAD - Colon adenocarcinoma(227;4.48e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		TCCTGTGAAAGCCTTTGTTGA	0.453													98	318					0	0	1	0	0	
SPEN	23013	broad.mit.edu	37	1	16237756	16237756	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:16237756C>A	uc001axk.1	+	5	1407	c.1203C>A	c.(1201-1203)TTC>TTA	p.F401L	SPEN_uc010obp.1_Missense_Mutation_p.F360L	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	401	RRM 2.|By similarity.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GAAAACTTTTCTTTGGCATGC	0.433													27	71					6.12954e-19	7.17843e-19	1	1	0	
SPEN	23013	broad.mit.edu	37	1	16254624	16254624	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:16254624G>A	uc001axk.1	+	11	2093	c.1889G>A	c.(1888-1890)CGT>CAT	p.R630H	SPEN_uc010obp.1_Missense_Mutation_p.R589H	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	630	Arg-rich.|Tyr-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AACCAAGATCGTACATATTAT	0.408													70	62					0	0	1	0	0	
SPEN	23013	broad.mit.edu	37	1	16255513	16255513	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:16255513A>C	uc001axk.1	+	11	2982	c.2778A>C	c.(2776-2778)AAA>AAC	p.K926N	SPEN_uc010obp.1_Missense_Mutation_p.K885N	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	926					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AGCCTGCAAAATCTGACTTGT	0.448													108	276					0	0	1	0	0	
SPEN	23013	broad.mit.edu	37	1	16260420	16260420	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:16260420T>C	uc001axk.1	+	11	7889	c.7685T>C	c.(7684-7686)GTC>GCC	p.V2562A	SPEN_uc010obp.1_Missense_Mutation_p.V2521A	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2562	RID.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GCAGAGCCTGTCAGTGCTGCC	0.532													110	237					0	0	1	0	0	
SPEN	23013	broad.mit.edu	37	1	16265254	16265254	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:16265254C>T	uc001axk.1	+	14	10950	c.10746C>T	c.(10744-10746)GGC>GGT	p.G3582G	SPEN_uc010obp.1_Silent_p.G3541G	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	3582	SPOC.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TGCCCTGTGGCCGTGACCAAG	0.597													15	48					0	0	1	0	0	
CLCNKA	1187	broad.mit.edu	37	1	16359671	16359671	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:16359671A>C	uc001axu.2	+	19	2016	c.1936A>C	c.(1936-1938)AAC>CAC	p.N646H	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.N645H|CLCNKA_uc010obw.1_Missense_Mutation_p.N603H|CLCNKB_uc001axw.3_Intron	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	646	CBS 2.				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	CCAGGCACAAAACCTCTTTAA	0.622											OREG0013132	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	52	159					0	0	1	0	0	
ARHGEF19	128272	broad.mit.edu	37	1	16528923	16528923	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:16528923C>T	uc001ayc.1	-	13	2191	c.2054G>A	c.(2053-2055)CGG>CAG	p.R685Q	ARHGEF19_uc009voo.1_Missense_Mutation_p.R38Q|ARHGEF19_uc001ayb.1_Missense_Mutation_p.R162Q	NM_153213	NP_694945	Q8IW93	ARHGJ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 19	685	PH.				regulation of actin cytoskeleton organization	intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|Colorectal(212;3.48e-07)|COAD - Colon adenocarcinoma(227;2.19e-05)|BRCA - Breast invasive adenocarcinoma(304;9.46e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0117)|READ - Rectum adenocarcinoma(331;0.0649)		CGTCCGGGCCCGCAGCAGGAA	0.682													5	20					0	0	1	0	0	
FBXO42	54455	broad.mit.edu	37	1	16632304	16632304	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:16632304A>G	uc001ayg.2	-	3	577	c.361T>C	c.(361-363)TCG>CCG	p.S121P	FBXO42_uc001ayf.2_Missense_Mutation_p.S28P|FBXO42_uc001ayh.2_Missense_Mutation_p.S121P	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	121										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		TTACTGTGCGAGAAGCGCTGA	0.418													26	57					0	0	1	0	0	
MST1P2	11209	broad.mit.edu	37	1	16975134	16975134	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:16975134C>T	uc010och.1	+	7		c.1594C>T			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GGACCCCATTCGACTACTGTG	0.612													8	129					0	0	1	0	0	
CROCC	9696	broad.mit.edu	37	1	17265432	17265432	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:17265432T>C	uc001azt.2	+	12	1472	c.1403T>C	c.(1402-1404)GTC>GCC	p.V468A	CROCC_uc009voy.1_Missense_Mutation_p.V171A|CROCC_uc009voz.1_Missense_Mutation_p.V231A|CROCC_uc001azu.2_5'Flank	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	468					cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		GAGAGCGGCGTCCAGCTGAGC	0.706													12	25					0	0	1	0	0	
CROCC	9696	broad.mit.edu	37	1	17280759	17280759	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:17280759G>T	uc001azt.2	+	22	3297	c.3228G>T	c.(3226-3228)GAG>GAT	p.E1076D	CROCC_uc009voz.1_Missense_Mutation_p.E675D|CROCC_uc001azu.2_Missense_Mutation_p.E379D	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	1076					cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		CGCTGTCAGAGAAGTTGATGG	0.637													22	169					2.70639e-06	2.81248e-06	1	1	0	
PADI4	23569	broad.mit.edu	37	1	17690157	17690157	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:17690157C>A	uc001baj.2	+	16	1927	c.1899C>A	c.(1897-1899)TTC>TTA	p.F633L		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	633					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	TCAACGACTTCTTCACCTACC	0.612													20	21					1.01871e-10	1.10886e-10	1	1	0	
PADI6	353238	broad.mit.edu	37	1	17707627	17707627	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:17707627A>G	uc001bak.1	+	5	521	c.521A>G	c.(520-522)GAC>GGC	p.D174G		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	166					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CAACTTGAGGACAAGAAAACC	0.502													3	5					0	0	1	0	0	
PADI6	353238	broad.mit.edu	37	1	17721561	17721561	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:17721561C>A	uc001bak.1	+	13	1452	c.1452C>A	c.(1450-1452)TTC>TTA	p.F484L		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	476					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TGGATGAGTTCATGTGCTTCA	0.532													28	67					2.12542e-12	2.35257e-12	1	1	0	
RCC2	55920	broad.mit.edu	37	1	17735647	17735647	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:17735647T>G	uc001bal.2	-	12	1555	c.1508A>C	c.(1507-1509)GAA>GCA	p.E503A	RCC2_uc001bam.2_Missense_Mutation_p.E503A	NM_001136204	NP_001129676	Q9P258	RCC2_HUMAN	regulator of chromosome condensation 2	503					cell division|mitotic prometaphase	chromosome, centromeric region|cytosol|microtubule|nucleolus|spindle					0		Colorectal(325;0.000147)|Breast(348;0.00122)|Renal(390;0.00145)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;7.69e-06)|COAD - Colon adenocarcinoma(227;1.19e-05)|Kidney(64;0.000189)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.0135)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)		AGTCTCACTTTCATCTCTTGC	0.552													37	73					0	0	1	0	0	
ACTL8	81569	broad.mit.edu	37	1	18149556	18149556	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:18149556G>A	uc001bat.2	+	2	269	c.53G>A	c.(52-54)GGC>GAC	p.G18D		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	18						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		TTGAAGGCTGGCACGGCCGGC	0.592													26	32					0	0	1	0	0	
ACTL8	81569	broad.mit.edu	37	1	18152471	18152471	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:18152471G>T	uc001bat.2	+	3	774	c.558G>T	c.(556-558)AAG>AAT	p.K186N		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	186						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		ATCTCCTCAAGAGTCTCTTTA	0.612											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	28					0.00307968	0.0031162	1	1	0	
KLHDC7A	127707	broad.mit.edu	37	1	18809805	18809805	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:18809805T>G	uc001bax.2	+	1	2382	c.2330T>G	c.(2329-2331)GTC>GGC	p.V777G	KLHDC7A_uc009vpg.2_Intron	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	777						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CAGACCAGGGTCTAGCAGTCC	0.652													35	59					0	0	1	0	0	
PAX7	5081	broad.mit.edu	37	1	19027166	19027166	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:19027166G>A	uc001bay.2	+	6	1404	c.806G>A	c.(805-807)CGC>CAC	p.R269H	PAX7_uc001baz.2_Missense_Mutation_p.R267H|PAX7_uc010oct.1_Missense_Mutation_p.R269H	NM_002584	NP_002575	P23759	PAX7_HUMAN	paired box 7 isoform 1	269	Homeobox.				anti-apoptosis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX7/FOXO1(197)	soft_tissue(197)|lung(3)|prostate(1)|ovary(1)|breast(1)	203		Colorectal(325;3.46e-05)|all_lung(284;0.000439)|Renal(390;0.000518)|Lung NSC(340;0.000543)|Breast(348;0.00093)|Ovarian(437;0.00768)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00609)|BRCA - Breast invasive adenocarcinoma(304;4.71e-05)|Kidney(64;0.000279)|KIRC - Kidney renal clear cell carcinoma(64;0.00371)|STAD - Stomach adenocarcinoma(196;0.00658)|READ - Rectum adenocarcinoma(331;0.0576)		AGTAACCGCCGCGCCCGTTGG	0.652			T	FOXO1A	alveolar rhabdomyosarcoma								32	62					0	0	1	0	0	
TAS1R2	80834	broad.mit.edu	37	1	19166471	19166471	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:19166471C>A	uc001bba.1	-	6	2143	c.2142G>T	c.(2140-2142)AAG>AAT	p.K714N		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	714	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CAATTGTGATCTTGGGGTCAT	0.542													28	49					9.39395e-14	1.05303e-13	1	1	0	
IFFO2	126917	broad.mit.edu	37	1	19236921	19236921	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:19236921C>T	uc001bbd.2	-	8	1363	c.1363G>A	c.(1363-1365)GAG>AAG	p.E455K		NM_001136265	NP_001129737	Q5TF58	IFFO2_HUMAN	intermediate filament family orphan 2	455											0						TCCATGTACTCGTGCAGGTGT	0.582													9	16					0	0	1	0	0	
FAM43B	163933	broad.mit.edu	37	1	20879493	20879493	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:20879493C>T	uc001bdj.2	+	1	562	c.27C>T	c.(25-27)TTC>TTT	p.F9F		NM_207334	NP_997217	Q6ZT52	FA43B_HUMAN	family with sequence similarity 43, member B	9											0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00979)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000132)|Kidney(64;0.00016)|GBM - Glioblastoma multiforme(114;0.000399)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.195)		GTAACAAATTCGTGCTGGTGG	0.692													8	28					0	0	1	0	0	
KIF17	57576	broad.mit.edu	37	1	20991151	20991151	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:20991151C>T	uc001bdr.3	-	15	3134	c.3016G>A	c.(3016-3018)GAG>AAG	p.E1006K	KIF17_uc001bdp.3_Missense_Mutation_p.E283K|KIF17_uc001bdq.3_Missense_Mutation_p.E284K|KIF17_uc009vpx.2_Missense_Mutation_p.E376K|KIF17_uc001bds.3_Missense_Mutation_p.E1005K	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	1006					microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		TCGAGGGACTCGAGGCGGAAG	0.602													28	94					0	0	1	0	0	
EIF4G3	8672	broad.mit.edu	37	1	21220089	21220089	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:21220089C>T	uc001bec.2	-	13	2262	c.2006G>A	c.(2005-2007)CGA>CAA	p.R669Q	EIF4G3_uc010odi.1_Missense_Mutation_p.R273Q|EIF4G3_uc010odj.1_Missense_Mutation_p.R668Q|EIF4G3_uc009vpz.2_Missense_Mutation_p.R389Q|EIF4G3_uc001bed.2_Missense_Mutation_p.R669Q|EIF4G3_uc001bef.2_Missense_Mutation_p.R668Q|EIF4G3_uc001bee.2_Missense_Mutation_p.R675Q	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	669					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		AGGCAAAATTCGAGGATCCAG	0.463													31	63					0	0	1	0	0	
ECE1	1889	broad.mit.edu	37	1	21546588	21546588	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:21546588C>T	uc001bek.2	-	19	2248	c.2173G>A	c.(2173-2175)GAA>AAA	p.E725K	ECE1_uc001bem.2_Missense_Mutation_p.E709K|ECE1_uc001bej.2_Missense_Mutation_p.E713K|ECE1_uc001bei.2_Missense_Mutation_p.E722K|ECE1_uc010odl.1_Missense_Mutation_p.E693K	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	725	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		ATGAGGCCTTCGTGGGAGCTC	0.647													16	26					0	0	1	0	0	
ECE1	1889	broad.mit.edu	37	1	21551860	21551860	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:21551860C>T	uc001bek.2	-	17	1998	c.1923G>A	c.(1921-1923)CAG>CAA	p.Q641Q	ECE1_uc001bem.2_Silent_p.Q625Q|ECE1_uc001bej.2_Silent_p.Q629Q|ECE1_uc001bei.2_Silent_p.Q638Q|ECE1_uc010odl.1_Silent_p.Q641Q	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	641	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		TGCACTCGGTCTGACGCTTGA	0.622													13	48					0	0	1	0	0	
USP48	84196	broad.mit.edu	37	1	22055105	22055105	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:22055105C>T	uc001bfb.2	-	11	1646	c.1408G>A	c.(1408-1410)GAA>AAA	p.E470K	USP48_uc010odq.1_Missense_Mutation_p.E469K|USP48_uc009vqc.2_Missense_Mutation_p.E470K|USP48_uc001bfc.2_Missense_Mutation_p.E470K|USP48_uc001bfe.1_Missense_Mutation_p.E469K|USP48_uc001bff.2_Missense_Mutation_p.E470K	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	470	DUSP 1.				ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		TTAACCTCTTCGTGTTTTGCT	0.423													53	84					0	0	1	0	0	
USP48	84196	broad.mit.edu	37	1	22056301	22056301	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:22056301C>T	uc001bfb.2	-	10	1434	c.1196G>A	c.(1195-1197)CGT>CAT	p.R399H	USP48_uc010odq.1_Missense_Mutation_p.R398H|USP48_uc009vqc.2_Missense_Mutation_p.R399H|USP48_uc001bfc.2_Missense_Mutation_p.R399H|USP48_uc001bfe.1_Missense_Mutation_p.R398H|USP48_uc001bff.2_Missense_Mutation_p.R399H	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	399					ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		CTTGGGTTTACGTGTCTGAGA	0.388													50	106					0	0	1	0	0	
ZBTB40	9923	broad.mit.edu	37	1	22816534	22816534	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:22816534T>C	uc001bft.2	+	3	604	c.93T>C	c.(91-93)GGT>GGC	p.G31G	ZBTB40_uc001bfu.2_Silent_p.G31G|ZBTB40_uc009vqi.1_Silent_p.G31G	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	31	BTB.				bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		TCTCCATTGGTACCATTTACT	0.532													24	55					0	0	1	0	0	
EPHB2	2048	broad.mit.edu	37	1	23235657	23235657	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:23235657A>G	uc009vqj.1	+	13	2640	c.2495A>G	c.(2494-2496)AAC>AGC	p.N832S	EPHB2_uc001bge.2_Missense_Mutation_p.N833S|EPHB2_uc001bgf.2_Missense_Mutation_p.N832S|EPHB2_uc010odu.1_Missense_Mutation_p.N774S	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	832	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GACATGACCAACCAGGATGTA	0.592									Hereditary_Prostate_Cancer				17	53					0	0	1	0	0	
HNRNPR	10236	broad.mit.edu	37	1	23637094	23637094	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:23637094A>G	uc001bgr.3	-	11	1914	c.1755T>C	c.(1753-1755)CGT>CGC	p.R585R	HNRNPR_uc001bgo.2_Silent_p.R195R|HNRNPR_uc001bgp.3_Silent_p.R588R|HNRNPR_uc009vqk.2_Silent_p.R487R|HNRNPR_uc001bgs.3_Silent_p.R484R|HNRNPR_uc010odw.1_Silent_p.R547R|HNRNPR_uc010odx.1_Silent_p.R425R|HNRNPR_uc009vql.2_Silent_p.R446R	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	585	Asn/Gln-rich.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		TGGTCTGACGACGCTTGGAAT	0.542													68	136					0	0	1	0	0	
MYOM3	127294	broad.mit.edu	37	1	24413228	24413228	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:24413228C>A	uc001bin.3	-	15	1867	c.1704G>T	c.(1702-1704)AAG>AAT	p.K568N	MYOM3_uc001bim.3_Missense_Mutation_p.K225N|MYOM3_uc001bio.2_Missense_Mutation_p.K568N|MYOM3_uc001bip.1_Missense_Mutation_p.K225N	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	568	Fibronectin type-III 2.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		CATACGACTTCTTTTTCTCCA	0.582													23	62					1.36565e-18	1.59705e-18	1	1	0	
MYOM3	127294	broad.mit.edu	37	1	24421951	24421951	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:24421951G>A	uc001bin.3	-	8	934	c.771C>T	c.(769-771)TTC>TTT	p.F257F	MYOM3_uc001bim.3_5'Flank|MYOM3_uc001bio.2_Silent_p.F257F|MYOM3_uc001bip.1_5'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	257										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TCTCTGAATCGAAGCCAGCAT	0.463													33	97					0	0	1	0	0	
NIPAL3	57185	broad.mit.edu	37	1	24746100	24746100	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:24746100C>T	uc001bjh.2	+	2	470	c.63C>T	c.(61-63)AGC>AGT	p.S21S	NIPAL3_uc010oek.1_Silent_p.S21S|NIPAL3_uc001bjg.2_Silent_p.S21S|NIPAL3_uc009vrc.2_5'UTR	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3	21	Poly-Ser.					integral to membrane					0						GTAGCTCCAGCGCCGTAAGCG	0.572													20	16					0	0	1	0	0	
NIPAL3	57185	broad.mit.edu	37	1	24790531	24790531	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:24790531C>T	uc001bjh.2	+	11	1349	c.942C>T	c.(940-942)TTC>TTT	p.F314F	NIPAL3_uc001bjg.2_Silent_p.F314F|NIPAL3_uc009vrc.2_Silent_p.F232F|NIPAL3_uc001bji.2_Missense_Mutation_p.L123F	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3	314	Helical; (Potential).					integral to membrane					0						TCATTGCATTCTTGGGCGTCT	0.507													9	27					0	0	1	0	0	
SYF2	25949	broad.mit.edu	37	1	25554613	25554613	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:25554613A>C	uc001bjt.1	-	4	427	c.372T>G	c.(370-372)TTT>TTG	p.F124L	SYF2_uc001bju.1_Missense_Mutation_p.F82L|SYF2_uc010oeo.1_Missense_Mutation_p.F124L	NM_015484	NP_056299	O95926	SYF2_HUMAN	SYF2 homolog, RNA splicing factor isoform 1	124						catalytic step 2 spliceosome					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-26)|Colorectal(126;2.54e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000455)|STAD - Stomach adenocarcinoma(196;0.000766)|KIRC - Kidney renal clear cell carcinoma(1967;0.00145)|GBM - Glioblastoma multiforme(114;0.00443)|READ - Rectum adenocarcinoma(331;0.0936)|Lung(427;0.201)		TCTGACCTGAAAATCCCAGAT	0.423													34	65					0	0	1	0	0	
MAN1C1	57134	broad.mit.edu	37	1	26110217	26110217	+	Silent	SNP	C	T	T	rs142054155		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:26110217C>T	uc001bkm.2	+	12	2160	c.1830C>T	c.(1828-1830)ACC>ACT	p.T610T	MAN1C1_uc009vry.1_Silent_p.T430T|MAN1C1_uc001bkn.2_Silent_p.T81T	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	610	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		TGTTCAACACCGAGGCCCACC	0.632													26	47					0	0	1	0	0	
SLC30A2	7780	broad.mit.edu	37	1	26371619	26371619	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:26371619G>A	uc001blh.1	-	2	357	c.140C>T	c.(139-141)GCC>GTC	p.A47V	SLC30A2_uc001blg.1_Missense_Mutation_p.A47V	NM_032513	NP_115902	Q9BRI3	ZNT2_HUMAN	solute carrier family 30, member 2 isoform 2	47	Cytoplasmic (Potential).				positive regulation of sequestering of zinc ion|zinc ion transport	integral to membrane|late endosome|lysosomal membrane	cation transmembrane transporter activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;6.18e-05)|all_lung(284;9.43e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;7.09e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000728)|BRCA - Breast invasive adenocarcinoma(304;0.000969)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00614)|READ - Rectum adenocarcinoma(331;0.0649)		GTTGCTCTGGGCAGCCAGCTC	0.617													54	110					0	0	1	0	0	
GRRP1	79927	broad.mit.edu	37	1	26487894	26487894	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:26487894C>T	uc001blk.2	+	2	299	c.112C>T	c.(112-114)CGA>TGA	p.R38*		NM_024869	NP_079145	Q8TAY7	GRPP1_HUMAN	glycine/arginine rich protein 1	38											0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000154)|all_lung(284;0.00021)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.38e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0143)|READ - Rectum adenocarcinoma(331;0.0649)		GATAGCTAGGCGACAGGAGCC	0.701													3	6					0	0	1	0	0	
CD52	1043	broad.mit.edu	37	1	26646686	26646686	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:26646686A>C	uc001bmc.2	+	2	177	c.79A>C	c.(79-81)AAC>CAC	p.N27H	UBXN11_uc001bma.2_5'Flank	NM_001803	NP_001794	P31358	CD52_HUMAN	CD52 antigen precursor	27					elevation of cytosolic calcium ion concentration|respiratory burst	anchored to membrane|integral to plasma membrane|membrane fraction					0		all_cancers(24;5.02e-24)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;7.56e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0137)|READ - Rectum adenocarcinoma(331;0.0649)	Alemtuzumab(DB00087)	CTCAGGACAAAACGACACCAG	0.398													25	40					0	0	1	0	0	
AIM1L	55057	broad.mit.edu	37	1	26655305	26655305	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:26655305G>A	uc001bmd.3	-	15	1669	c.1239C>T	c.(1237-1239)ATC>ATT	p.I413I		NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like	413	Beta/gamma crystallin 'Greek key' 9.						sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		TGCTGAGCTCGATCTCCTTCC	0.597													36	78					0	0	1	0	0	
AIM1L	55057	broad.mit.edu	37	1	26658088	26658088	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:26658088C>T	uc001bmd.3	-	14	1501	c.1071G>A	c.(1069-1071)ACG>ACA	p.T357T		NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like	357	Beta/gamma crystallin 'Greek key' 8.						sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		CCTCGAAGTTCGTCTCATCAA	0.582													21	46					0	0	1	0	0	
ZNF683	257101	broad.mit.edu	37	1	26691442	26691442	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:26691442G>T	uc001bmg.1	-	4	713	c.595C>A	c.(595-597)CTC>ATC	p.L199I	ZNF683_uc001bmh.1_Missense_Mutation_p.L199I|ZNF683_uc009vsj.1_Missense_Mutation_p.L199I	NM_173574	NP_775845	Q8IZ20	ZN683_HUMAN	zinc finger protein 683	199					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(24;2.39e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.76e-26)|Colorectal(126;1.38e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|BRCA - Breast invasive adenocarcinoma(304;0.00099)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00793)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.159)|LUSC - Lung squamous cell carcinoma(448;0.233)		GGAGGCAGGAGAAGTGGGTAT	0.617													11	15					3.86212e-05	3.96572e-05	1	1	0	
ARID1A	8289	broad.mit.edu	37	1	27094302	27094302	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:27094302A>G	uc001bmv.1	+	11	3383	c.3010A>G	c.(3010-3012)ACC>GCC	p.T1004A	ARID1A_uc001bmt.1_Missense_Mutation_p.T1004A|ARID1A_uc001bmu.1_Missense_Mutation_p.T1004A|ARID1A_uc001bmw.1_Missense_Mutation_p.T621A	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1004					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TTCTACTACAACCAATGAGAA	0.483			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								24	35					0	0	1	0	0	
ARID1A	8289	broad.mit.edu	37	1	27097788	27097788	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:27097788C>T	uc001bmv.1	+	12	3750	c.3377C>T	c.(3376-3378)TCC>TTC	p.S1126F	ARID1A_uc001bmt.1_Missense_Mutation_p.S1126F|ARID1A_uc001bmu.1_Missense_Mutation_p.S1126F|ARID1A_uc001bmw.1_Missense_Mutation_p.S743F|ARID1A_uc001bmx.1_5'UTR|ARID1A_uc009vsm.1_5'Flank	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1126					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TCCAAGAAGTCCCAGCCCAAG	0.537			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								7	39					0	0	1	0	0	
PIGV	55650	broad.mit.edu	37	1	27121613	27121613	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:27121613A>C	uc001bmz.2	+	3	1419	c.1088A>C	c.(1087-1089)AAC>ACC	p.N363T	PIGV_uc001bmy.2_Missense_Mutation_p.N128T|PIGV_uc009vso.2_Missense_Mutation_p.N363T|PIGV_uc010ofg.1_Missense_Mutation_p.N128T|PIGV_uc001bna.2_Missense_Mutation_p.N363T	NM_017837	NP_060307	Q9NUD9	PIGV_HUMAN	phosphatidylinositol glycan class V	363	Cytoplasmic (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	glycolipid mannosyltransferase activity			ovary(1)	1		all_cancers(24;3.93e-26)|all_epithelial(13;3.96e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.26e-54)|Epithelial(14;2.85e-53)|OV - Ovarian serous cystadenocarcinoma(117;1.91e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000504)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.0222)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.153)|LUSC - Lung squamous cell carcinoma(448;0.227)		AGGAGCAAGAACAATAAGACC	0.547													64	93					0	0	1	0	0	
GPATCH3	63906	broad.mit.edu	37	1	27217691	27217691	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:27217691A>C	uc001bne.2	-	7	1417	c.1388T>G	c.(1387-1389)TTT>TGT	p.F463C	GPN2_uc001bnd.1_5'Flank|GPATCH3_uc009vsp.1_Missense_Mutation_p.F274C	NM_022078	NP_071361	Q96I76	GPTC3_HUMAN	G patch domain containing 3	463						intracellular	nucleic acid binding				0		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.97e-51)|OV - Ovarian serous cystadenocarcinoma(117;9.55e-30)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|STAD - Stomach adenocarcinoma(196;0.000595)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|READ - Rectum adenocarcinoma(331;0.0419)		CAGTTGCCCAAATGGCTGTAG	0.552													16	30					0	0	1	0	0	
MAP3K6	9064	broad.mit.edu	37	1	27688646	27688646	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:27688646C>T	uc001bny.1	-	9	1600	c.1351G>A	c.(1351-1353)GCC>ACC	p.A451T	MAP3K6_uc009vsw.1_Missense_Mutation_p.A443T|MAP3K6_uc001bnz.1_5'Flank	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	451					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GGGTCATTGGCGAGGATCTGG	0.602													15	26					0	0	1	0	0	
FCN3	8547	broad.mit.edu	37	1	27697428	27697428	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:27697428G>T	uc001boa.2	-	6	435	c.429C>A	c.(427-429)TTC>TTA	p.F143L	FCN3_uc001bob.2_Missense_Mutation_p.F132L	NM_003665	NP_003656	O75636	FCN3_HUMAN	ficolin 3 isoform 1 precursor	143	Fibrinogen C-terminal.				complement activation, lectin pathway|signal transduction	collagen|extracellular space	receptor binding|sugar binding				0		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;1.42e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00128)|KIRC - Kidney renal clear cell carcinoma(1967;0.00155)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		AAGAGCGGAAGAAATCCACAG	0.557													25	58					4.7796e-09	5.11423e-09	1	1	0	
WASF2	10163	broad.mit.edu	37	1	27745548	27745548	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:27745548C>T	uc001bof.1	-	3	388	c.172G>A	c.(172-174)GCA>ACA	p.A58T	WASF2_uc010ofl.1_Missense_Mutation_p.A58T	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	58					actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		AAGGTATTTGCCTGAGTAAAG	0.448													47	63					0	0	1	0	0	
AHDC1	27245	broad.mit.edu	37	1	27876445	27876445	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:27876445G>A	uc009vsy.2	-	6	3151	c.2182C>T	c.(2182-2184)CGG>TGG	p.R728W	AHDC1_uc009vsz.1_Missense_Mutation_p.R728W	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	728	Gly-rich.						DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		ACCTCCCCCCGGCCCCGTTTG	0.652													19	32					0	0	1	0	0	
FGR	2268	broad.mit.edu	37	1	27939476	27939476	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:27939476C>A	uc001boj.2	-	11	1685	c.1539G>T	c.(1537-1539)GAG>GAT	p.E513D	FGR_uc001boi.2_Missense_Mutation_p.E216D|FGR_uc001bok.2_Missense_Mutation_p.E513D|FGR_uc001bol.2_Missense_Mutation_p.E513D|FGR_uc001bom.2_Missense_Mutation_p.E513D	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	513	Protein kinase.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		TGAAGTAGTCCTCCAGGAAGG	0.622													17	29					6.94344e-10	7.49515e-10	1	1	0	
EYA3	2140	broad.mit.edu	37	1	28319925	28319925	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:28319925T>G	uc001bpi.1	-	14	1454	c.1289A>C	c.(1288-1290)AAA>ACA	p.K430T	EYA3_uc010ofs.1_Missense_Mutation_p.K377T|EYA3_uc010oft.1_Missense_Mutation_p.K384T|EYA3_uc001bpj.2_Missense_Mutation_p.K384T|EYA3_uc001bpk.1_RNA|EYA3_uc010ofu.1_RNA	NM_001990	NP_001981	Q99504	EYA3_HUMAN	eyes absent 3	430					anatomical structure morphogenesis|double-strand break repair|histone dephosphorylation|multicellular organismal development|positive regulation of DNA repair|regulation of transcription, DNA-dependent|response to ionizing radiation|transcription, DNA-dependent|visual perception	cytoplasm	metal ion binding|protein binding|protein tyrosine phosphatase activity			ovary(2)|skin(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000432)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0484)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;2.8e-06)|STAD - Stomach adenocarcinoma(196;0.00364)|KIRC - Kidney renal clear cell carcinoma(1967;0.00378)|BRCA - Breast invasive adenocarcinoma(304;0.00718)|READ - Rectum adenocarcinoma(331;0.0642)		CACGTTGCTTTTATGCTTATC	0.468													42	110					0	0	1	0	0	
PTPRU	10076	broad.mit.edu	37	1	29605969	29605969	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:29605969T>C	uc001bru.2	+	10	1675	c.1565T>C	c.(1564-1566)ATC>ACC	p.I522T	PTPRU_uc001brv.2_Missense_Mutation_p.I522T|PTPRU_uc001brw.2_Missense_Mutation_p.I522T|PTPRU_uc009vtq.2_Missense_Mutation_p.I522T|PTPRU_uc009vtr.2_Missense_Mutation_p.I522T	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	522	Extracellular (Potential).|Fibronectin type-III 3.				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		TGCCCCCAGATCAGCTACCAG	0.597													33	46					0	0	1	0	0	
MATN1	4146	broad.mit.edu	37	1	31191761	31191761	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:31191761T>C	uc001brz.2	-	3	519	c.485A>G	c.(484-486)CAG>CGG	p.Q162R	uc001bsb.1_RNA|MATN1_uc001bsa.1_Missense_Mutation_p.Q80R	NM_002379	NP_002370	P21941	MATN1_HUMAN	matrilin 1, cartilage matrix protein precursor	162	VWFA 1.				protein complex assembly	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			central_nervous_system(1)	1		Colorectal(325;0.00792)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)|Ovarian(437;0.0563)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-05)|COAD - Colon adenocarcinoma(152;0.000726)|STAD - Stomach adenocarcinoma(196;0.0183)|READ - Rectum adenocarcinoma(331;0.0649)		AGACACGTCCTGCACGCTGTC	0.721													4	5					0	0	1	0	0	
PUM1	9698	broad.mit.edu	37	1	31426818	31426818	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:31426818C>T	uc001bsi.1	-	15	2447	c.2334G>A	c.(2332-2334)ACG>ACA	p.T778T	PUM1_uc001bsf.1_Silent_p.T444T|PUM1_uc001bsg.1_Silent_p.T512T|PUM1_uc001bsh.1_Silent_p.T778T|PUM1_uc001bsj.1_Silent_p.T752T|PUM1_uc010oga.1_Silent_p.T634T|PUM1_uc001bsk.1_Silent_p.T814T|PUM1_uc010ogb.1_Silent_p.T719T	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	778	Ser-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		CACTGCCATTCGTGAGTCCTC	0.517													47	66					0	0	1	0	0	
PUM1	9698	broad.mit.edu	37	1	31532388	31532388	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:31532388C>A	uc001bsi.1	-	2	139	c.26G>T	c.(25-27)AGA>ATA	p.R9I	PUM1_uc001bsh.1_Missense_Mutation_p.R9I|PUM1_uc001bsj.1_Missense_Mutation_p.R9I|PUM1_uc010oga.1_Missense_Mutation_p.R9I|PUM1_uc001bsk.1_Missense_Mutation_p.R45I|PUM1_uc010ogb.1_Missense_Mutation_p.R45I	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	9					cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		CACTGCTTTTCTCTTCAAGAC	0.413													38	61					2.24893e-16	2.58354e-16	1	1	0	
COL16A1	1307	broad.mit.edu	37	1	32145658	32145658	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:32145658G>T	uc001btk.1	-	40	3020	c.2655C>A	c.(2653-2655)ATC>ATA	p.I885I	COL16A1_uc001btj.1_Silent_p.I714I|COL16A1_uc001btl.3_Silent_p.I885I	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	885	Nonhelical region 5 (NC5).				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		TGCCAGAGAAGATGAGGTCTC	0.582													5	29					3.59834e-05	3.69903e-05	1	1	0	
BAI2	576	broad.mit.edu	37	1	32206090	32206090	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:32206090G>A	uc001btn.2	-	12	2201	c.1847C>T	c.(1846-1848)TCG>TTG	p.S616L	BAI2_uc010ogo.1_Missense_Mutation_p.S258L|BAI2_uc010ogp.1_Missense_Mutation_p.S549L|BAI2_uc010ogq.1_Missense_Mutation_p.S616L|BAI2_uc001bto.2_Missense_Mutation_p.S616L|BAI2_uc001btq.1_Missense_Mutation_p.S549L|BAI2_uc010ogr.1_Intron	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	616	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		CACCACCTGCGACATGCCCTC	0.612													10	15					0	0	1	0	0	
SPOCD1	90853	broad.mit.edu	37	1	32280649	32280649	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:32280649G>A	uc001bts.1	-	2	344	c.286C>T	c.(286-288)CTG>TTG	p.L96L	SPOCD1_uc001btu.2_Silent_p.L96L|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	96					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CCAGGAGCCAGCATCGAGCCC	0.637													22	36					0	0	1	0	0	
KPNA6	23633	broad.mit.edu	37	1	32636370	32636370	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:32636370G>A	uc001bug.2	+	14	1574	c.1486G>A	c.(1486-1488)GAC>AAC	p.D496N	KPNA6_uc001buh.2_Missense_Mutation_p.D271N|KPNA6_uc010ogx.1_Missense_Mutation_p.D493N|KPNA6_uc010ogy.1_Missense_Mutation_p.D501N|KPNA6_uc009vtz.2_Missense_Mutation_p.D391N	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	496	ARM 10; atypical.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				GAAGGCCTTCGACCTCATTGA	0.502													37	83					0	0	1	0	0	
ZBTB8A	653121	broad.mit.edu	37	1	33059046	33059046	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:33059046A>G	uc001bvn.2	+	3	999	c.514A>G	c.(514-516)ACA>GCA	p.T172A	ZBTB8A_uc001bvk.2_RNA|ZBTB8A_uc001bvm.2_Missense_Mutation_p.T172A	NM_001040441	NP_001035531	Q96BR9	ZBT8A_HUMAN	zinc finger and BTB domain containing 8A	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGAGCAAGGAACAGGTATAAT	0.428													35	52					0	0	1	0	0	
ZBTB8A	653121	broad.mit.edu	37	1	33066006	33066006	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:33066006C>T	uc001bvn.2	+	5	1797	c.1312C>T	c.(1312-1314)CCC>TCC	p.P438S	ZBTB8A_uc001bvk.2_RNA|ZBTB8A_uc001bvm.2_3'UTR|ZBTB8OS_uc001bvo.1_Intron	NM_001040441	NP_001035531	Q96BR9	ZBT8A_HUMAN	zinc finger and BTB domain containing 8A	438					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGAAATTAAGCCCAACATTAG	0.403													14	56					0	0	1	0	0	
YARS	8565	broad.mit.edu	37	1	33248064	33248064	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:33248064A>C	uc001bvy.1	-	9	1771	c.983T>G	c.(982-984)TTT>TGT	p.F328C	YARS_uc001bvw.1_5'Flank|YARS_uc001bvx.1_5'UTR	NM_003680	NP_003671	P54577	SYYC_HUMAN	tyrosyl-tRNA synthetase	328					apoptosis|tyrosyl-tRNA aminoacylation	cytosol|extracellular space|nucleus|soluble fraction	ATP binding|interleukin-8 receptor binding|signal transducer activity|tRNA binding|tyrosine-tRNA ligase activity			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)			L-Tyrosine(DB00135)	AGGGGTATTAAACTTTTCCCG	0.512													36	76					0	0	1	0	0	
FNDC5	252995	broad.mit.edu	37	1	33330326	33330326	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:33330326G>T	uc001bwg.2	-	5	562	c.347C>A	c.(346-348)ACC>AAC	p.T116N	FNDC5_uc001bwe.2_RNA|FNDC5_uc001bwf.1_Missense_Mutation_p.T116N	NM_153756	NP_715637	Q8NAU1	FNDC5_HUMAN	fibronectin type III domain containing 5	175	Cytoplasmic (Potential).					integral to membrane|peroxisomal membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				TGCACTCTTGGTTTTTTCCTT	0.572													21	38					7.41877e-09	7.92233e-09	1	1	0	
ZSCAN20	7579	broad.mit.edu	37	1	33960823	33960823	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:33960823A>C	uc001bxj.3	+	8	3046	c.2879A>C	c.(2878-2880)AAA>ACA	p.K960T	ZSCAN20_uc009vui.2_Missense_Mutation_p.K959T	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	960	C2H2-type 8.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AAGCCCTACAAATGCCTTGAG	0.502													23	59					0	0	1	0	0	
CSMD2	114784	broad.mit.edu	37	1	34037145	34037145	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:34037145C>T	uc001bxn.1	-	52	7979	c.7950G>A	c.(7948-7950)ACG>ACA	p.T2650T	CSMD2_uc001bxm.1_Silent_p.T2648T	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2650	Sushi 16.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGCAGGTGGGCGTAGAGTCCC	0.587													24	49					0	0	1	0	0	
GJA4	2701	broad.mit.edu	37	1	35259868	35259868	+	Silent	SNP	G	A	A	rs143380983		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:35259868G>A	uc001bya.2	+	2	142	c.54G>A	c.(52-54)TCG>TCA	p.S18S	GJA4_uc009vul.2_Silent_p.S94S|GJA4_uc009vum.1_Silent_p.S18S	NM_002060	NP_002051	P35212	CXA4_HUMAN	connexin 37	18	Cytoplasmic (Potential).				cell-cell junction assembly	integral to plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				AGGAGCACTCGACCGTGGTGG	0.612													23	34					0	0	1	0	0	
DLGAP3	58512	broad.mit.edu	37	1	35370086	35370086	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:35370086C>T	uc001byc.2	-	1	899	c.899G>A	c.(898-900)AGC>AAC	p.S300N		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	300					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				CCCCTTGAAGCTCAAGTCCCG	0.652													34	70					0	0	1	0	0	
ZMYM6	9204	broad.mit.edu	37	1	35452862	35452862	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:35452862A>C	uc001byh.2	-	16	4049	c.3821T>G	c.(3820-3822)TTT>TGT	p.F1274C	uc001byd.3_5'Flank|uc001bye.2_5'Flank|ZMYM6_uc001byf.1_Intron|ZMYM6_uc010oht.1_Missense_Mutation_p.F1177C	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	1274					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				GGGTAATAAAAATTTCATTGC	0.363													31	55					0	0	1	0	0	
ZMYM6	9204	broad.mit.edu	37	1	35480485	35480485	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:35480485C>T	uc001byh.2	-	6	836	c.608G>A	c.(607-609)CGA>CAA	p.R203Q	ZMYM6_uc001byf.1_Missense_Mutation_p.R203Q|ZMYM6_uc010oht.1_Missense_Mutation_p.R106Q|ZMYM6_uc009vup.2_Missense_Mutation_p.R9Q|ZMYM6_uc009vuq.1_Missense_Mutation_p.R203Q|ZMYM6_uc009vur.1_Missense_Mutation_p.R9Q	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	203	MYM-type 2.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				AACTTCAAATCGAGTCTAGGA	0.333													16	47					0	0	1	0	0	
ZMYM1	79830	broad.mit.edu	37	1	35579062	35579062	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:35579062C>T	uc001bym.2	+	11	1779	c.1631C>T	c.(1630-1632)TCG>TTG	p.S544L	ZMYM1_uc001byn.2_Missense_Mutation_p.S544L|ZMYM1_uc010ohu.1_Missense_Mutation_p.S525L|ZMYM1_uc001byo.2_Missense_Mutation_p.S184L|ZMYM1_uc009vut.2_Missense_Mutation_p.S469L	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	544						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TCTATTCATTCGAAACAGATT	0.328													43	126					0	0	1	0	0	
ZMYM1	79830	broad.mit.edu	37	1	35580514	35580514	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:35580514G>A	uc001bym.2	+	11	3231	c.3083G>A	c.(3082-3084)AGA>AAA	p.R1028K	ZMYM1_uc001byn.2_Missense_Mutation_p.R1028K|ZMYM1_uc010ohu.1_Missense_Mutation_p.R1009K|ZMYM1_uc001byo.2_Missense_Mutation_p.R668K|ZMYM1_uc009vut.2_Missense_Mutation_p.R953K	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	1028						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CCAGAACTTAGATTTTATCGA	0.333													38	81					0	0	1	0	0	
ZMYM4	9202	broad.mit.edu	37	1	35852607	35852607	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:35852607T>G	uc001byt.2	+	12	1920	c.1840T>G	c.(1840-1842)TTA>GTA	p.L614V	ZMYM4_uc009vuu.2_Missense_Mutation_p.L582V|ZMYM4_uc001byu.2_Missense_Mutation_p.L290V|ZMYM4_uc009vuv.2_Missense_Mutation_p.L353V	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	614	MYM-type 6.				multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTTCCAGAATTTATTCAACAA	0.289													9	25					0	0	1	0	0	
KIAA0319L	79932	broad.mit.edu	37	1	35925982	35925982	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:35925982G>C	uc001byx.2	-	9	1609	c.1351C>G	c.(1351-1353)CTA>GTA	p.L451V	KIAA0319L_uc010ohv.1_Missense_Mutation_p.L93V|KIAA0319L_uc010ohw.1_RNA	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	451	PKD 2.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TCTTCTCTTAGAGGCCCCTTA	0.383													37	81					0	0	1	0	0	
EIF2C4	192670	broad.mit.edu	37	1	36301555	36301555	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:36301555A>G	uc001bzj.1	+	13	1875	c.1685A>G	c.(1684-1686)AAA>AGA	p.K562R		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	562	Piwi.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ATAAATGCAAAACTTGGAGGA	0.348													35	87					0	0	1	0	0	
EIF2C3	192669	broad.mit.edu	37	1	36499775	36499775	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:36499775C>T	uc001bzp.2	+	13	1848	c.1592C>T	c.(1591-1593)GCG>GTG	p.A531V	EIF2C3_uc001bzq.2_Missense_Mutation_p.A297V	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	531	Piwi.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TATTCCATAGCGGAAGTGAAA	0.353													7	25					0	0	1	0	0	
THRAP3	9967	broad.mit.edu	37	1	36754728	36754728	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:36754728G>T	uc001cae.3	+	5	1332	c.1108G>T	c.(1108-1110)GAA>TAA	p.E370*	THRAP3_uc001caf.3_Nonsense_Mutation_p.E370*|THRAP3_uc001cag.1_Nonsense_Mutation_p.E370*	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	370					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TACCGATAAAGAAAAAATAAA	0.358			T	USP6	aneurysmal bone cysts								20	47					5.03518e-11	5.49976e-11	1	1	0	
OSCP1	127700	broad.mit.edu	37	1	36886172	36886172	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:36886172G>A	uc001cap.2	-	9	976	c.894C>T	c.(892-894)TTC>TTT	p.F298F	OSCP1_uc001caq.2_Silent_p.F288F	NM_145047	NP_659484	Q8WVF1	OSCP1_HUMAN	oxidored-nitro domain-containing protein isoform	298					transport	basal plasma membrane				ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCCTGGCCAAGAAATTCAGCT	0.438											OREG0013368	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	104	203					0	0	1	0	0	
MRPS15	64960	broad.mit.edu	37	1	36926331	36926331	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:36926331A>C	uc001cas.2	-	5	511	c.347T>G	c.(346-348)GTT>GGT	p.V116G		NM_031280	NP_112570	P82914	RT15_HUMAN	mitochondrial ribosomal protein S15 precursor	116					translation	mitochondrial small ribosomal subunit|nuclear membrane	structural constituent of ribosome			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGGGTTTGCAACAATCTTCTT	0.502													22	43					0	0	1	0	0	
GRIK3	2899	broad.mit.edu	37	1	37319226	37319226	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:37319226C>T	uc001caz.2	-	8	1337	c.1202G>A	c.(1201-1203)GGC>GAC	p.G401D	GRIK3_uc001cba.1_Missense_Mutation_p.G401D	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	401	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CTTCTCCAGGCCATCCTCTTT	0.537													22	34					0	0	1	0	0	
GRIK3	2899	broad.mit.edu	37	1	37337828	37337828	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:37337828G>A	uc001caz.2	-	4	828	c.693C>T	c.(691-693)TTC>TTT	p.F231F	GRIK3_uc001cba.1_Silent_p.F231F	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	231	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GGCTGCAGTCGAAGATAATGC	0.607													13	25					0	0	1	0	0	
CDCA8	55143	broad.mit.edu	37	1	38172656	38172656	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:38172656C>T	uc001cbr.2	+	10	825	c.718C>T	c.(718-720)CGA>TGA	p.R240*	CDCA8_uc001cbs.2_Nonsense_Mutation_p.R240*	NM_018101	NP_060571	Q53HL2	BOREA_HUMAN	cell division cycle associated 8	240					cell division|chromosome organization|mitotic metaphase|mitotic prometaphase	chromosome passenger complex|chromosome, centromeric region|cytosol|nucleolus|spindle	protein binding			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TCAGAGCCTGCGATTATTGGC	0.522													31	88					0	0	1	0	0	
RRAGC	64121	broad.mit.edu	37	1	39305238	39305238	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39305238C>T	uc001ccq.2	-	7	1209	c.1187G>A	c.(1186-1188)CGA>CAA	p.R396Q	RRAGC_uc010oim.1_Missense_Mutation_p.R362Q|RRAGC_uc001ccr.2_Missense_Mutation_p.R318Q	NM_022157	NP_071440	Q9HB90	RRAGC_HUMAN	Ras-related GTP binding C	396					apoptosis|cell growth|cellular protein localization|cellular response to amino acid stimulus|positive regulation of TOR signaling cascade|RNA splicing|small GTPase mediated signal transduction|transcription, DNA-dependent	lysosome|nucleus	GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein heterodimerization activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)				GATGGCGTTTCGTGGCGTGCC	0.562													22	41					0	0	1	0	0	
GJA9	81025	broad.mit.edu	37	1	39341360	39341360	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39341360A>G	uc001cct.1	-	2	692	c.411T>C	c.(409-411)TGT>TGC	p.C137C	RRAGC_uc001ccr.2_5'Flank|MYCBP_uc001ccs.2_5'Flank	NM_030772	NP_110399	P57773	CXA9_HUMAN	gap junction protein, alpha 9, 59kDa	137	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane					0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			TCTCCAGCTGACAAAGCTCTT	0.443													56	114					0	0	1	0	0	
RHBDL2	54933	broad.mit.edu	37	1	39358897	39358897	+	Splice_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39358897C>A	uc001ccu.1	-	6	838	c.610_splice	c.e6-1	p.N204_splice	RHBDL2_uc010oin.1_Splice_Site_p.N204_splice|RHBDL2_uc010oio.1_Splice_Site_p.N284_splice	NM_017821	NP_060291	Q9NX52	RHBL2_HUMAN	rhomboid protease 2						proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity				0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			CTTGAAAATTCTTAAAAAGAG	0.299													12	20					0.00010058	0.000102942	1	1	0	
MACF1	23499	broad.mit.edu	37	1	39749819	39749819	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39749819T>C	uc010ois.1	+	11	1217	c.1012T>C	c.(1012-1014)TCA>CCA	p.S338P	MACF1_uc001cda.1_Missense_Mutation_p.S246P	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	338					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AATACTGATGTCAGATAAAAC	0.408													20	52					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39757662	39757662	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39757662G>A	uc010ois.1	+	17	2086	c.1881G>A	c.(1879-1881)ACG>ACA	p.T627T	MACF1_uc001cda.1_Silent_p.T535T	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	627					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ACATCCATACGAGTGTAGAAG	0.493													20	42					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39775246	39775246	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39775246G>A	uc010ois.1	+	25	3014	c.2809G>A	c.(2809-2811)GAA>AAA	p.E937K	MACF1_uc001cda.1_Missense_Mutation_p.E845K|MACF1_uc001cdc.1_Missense_Mutation_p.E24K|MACF1_uc009vvq.1_5'UTR|MACF1_uc001cdb.1_Missense_Mutation_p.E24K	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	937					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTCTAGGGTCGAACAATCTTA	0.408													34	64					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39785358	39785358	+	Missense_Mutation	SNP	G	A	A	rs139099001		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39785358G>A	uc010ois.1	+	32	4188	c.3983G>A	c.(3982-3984)AGA>AAA	p.R1328K	MACF1_uc001cda.1_Missense_Mutation_p.R1236K|MACF1_uc001cdc.1_Missense_Mutation_p.R415K|MACF1_uc009vvq.1_Missense_Mutation_p.R385K|MACF1_uc001cdb.1_Missense_Mutation_p.R415K	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1328					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GAAATTGAGAGAAATCAGACA	0.353													22	46					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39797149	39797149	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39797149G>A	uc010oiu.1	+	1	340	c.209G>A	c.(208-210)GGC>GAC	p.G70D	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1635					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GAGAGCAGAGGCCCTCTTTCT	0.488													41	88					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39797279	39797279	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39797279A>C	uc010oiu.1	+	1	470	c.339A>C	c.(337-339)GAA>GAC	p.E113D	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1678	Plectin 2.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTAACCTGGAAGAGGCTTTTC	0.413													46	107					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39801293	39801293	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39801293C>A	uc010oiu.1	+	1	4484	c.4353C>A	c.(4351-4353)TCC>TCA	p.S1451S	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3016					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGCATGACTCCCATATAAAGA	0.378													28	58					1.80694e-10	1.96319e-10	1	1	0	
MACF1	23499	broad.mit.edu	37	1	39802891	39802891	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39802891A>G	uc010oiu.1	+	2	5554	c.5423A>G	c.(5422-5424)GAA>GGA	p.E1808G	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3373					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GAACATGATGAAAAGCTAGTA	0.423													50	119					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39851600	39851600	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39851600A>C	uc010oiu.1	+	21	9794	c.9663A>C	c.(9661-9663)GCA>GCC	p.A3221A	MACF1_uc010ois.1_Silent_p.A2719A|MACF1_uc001cda.1_Silent_p.A2606A|MACF1_uc001cdc.1_Silent_p.A1785A	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	4786	LRR 18.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AAGACCTTGCAGGTAAGTTGG	0.463													33	37					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39907927	39907927	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39907927C>T	uc010oiu.1	+	41	14343	c.14212C>T	c.(14212-14214)CGA>TGA	p.R4738*	MACF1_uc010ois.1_Nonsense_Mutation_p.R4236*	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	6303	Spectrin 12.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGACATTATACGAGAACCACT	0.448													22	44					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39910339	39910339	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:39910339C>T	uc010oiu.1	+	45	14897	c.14766C>T	c.(14764-14766)CTC>CTT	p.L4922L	MACF1_uc010ois.1_Silent_p.L4420L	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TGTAGGAACTCTATTCCCAGC	0.448													14	47					0	0	1	0	0	
NT5C1A	84618	broad.mit.edu	37	1	40124988	40124988	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:40124988A>G	uc001cdq.1	-	6	912	c.912T>C	c.(910-912)GAT>GAC	p.D304D		NM_032526	NP_115915	Q9BXI3	5NT1A_HUMAN	5'-nucleotidase, cytosolic IA	304					purine base metabolic process|purine nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			ACAAGGCTTCATCTGTCTCCA	0.602													33	69					0	0	1	0	0	
NT5C1A	84618	broad.mit.edu	37	1	40131295	40131295	+	Missense_Mutation	SNP	G	A	A	rs144180251		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:40131295G>A	uc001cdq.1	-	3	331	c.331C>T	c.(331-333)CGG>TGG	p.R111W		NM_032526	NP_115915	Q9BXI3	5NT1A_HUMAN	5'-nucleotidase, cytosolic IA	111					purine base metabolic process|purine nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			TACAGCTCCCGCAGCCGCCTG	0.557													29	34					0	0	1	0	0	
RLF	6018	broad.mit.edu	37	1	40701665	40701665	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:40701665G>T	uc001cfc.3	+	8	1322	c.1291G>T	c.(1291-1293)GAA>TAA	p.E431*	RLF_uc001cfd.3_Nonsense_Mutation_p.E122*	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	431					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			TATGTTAGAAGAACTATATTT	0.373													46	83					1.6237e-14	1.8334e-14	1	1	0	
RLF	6018	broad.mit.edu	37	1	40705137	40705137	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:40705137T>G	uc001cfc.3	+	8	4794	c.4763T>G	c.(4762-4764)CTT>CGT	p.L1588R	RLF_uc001cfd.3_Missense_Mutation_p.L1279R	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	1588					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			ATGGAGAATCTTGTTGTTTGC	0.423													32	56					0	0	1	0	0	
ZMPSTE24	10269	broad.mit.edu	37	1	40758159	40758159	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:40758159T>G	uc001cfg.2	+	10	1457	c.1246T>G	c.(1246-1248)TTT>GTT	p.F416V		NM_005857	NP_005848	O75844	FACE1_HUMAN	zinc metallopeptidase STE24	416						endoplasmic reticulum membrane|Golgi membrane|integral to membrane	metal ion binding|metalloexopeptidase activity				0	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			CAGATTTGAGTTTCAAGCTGA	0.383													47	82					0	0	1	0	0	
ZNF643	65243	broad.mit.edu	37	1	40922718	40922718	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:40922718G>T	uc001cfn.1	+	3	612	c.315G>T	c.(313-315)GAG>GAT	p.E105D	ZNF643_uc001cfl.1_Missense_Mutation_p.E3D|ZNF643_uc001cfm.1_5'UTR	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	105	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			TGATGCTGGAGAACTATGGGA	0.488													8	42					1.12685e-05	1.16379e-05	1	1	0	
CTPS	1503	broad.mit.edu	37	1	41475885	41475885	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:41475885G>A	uc001cgk.3	+	18	2252	c.1744G>A	c.(1744-1746)GAA>AAA	p.E582K	CTPS_uc010ojo.1_Missense_Mutation_p.E351K|CTPS_uc001cgl.3_Missense_Mutation_p.E582K|CTPS_uc010ojq.1_Missense_Mutation_p.E426K|CTPS_uc009vwe.2_Missense_Mutation_p.E251K	NM_001905	NP_001896	P17812	PYRG1_HUMAN	CTP synthase	582					CTP biosynthetic process|glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|response to drug	cytosol	ATP binding|CTP synthase activity|protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)			L-Glutamine(DB00130)	TGAAATCACCGAACTGAAGTT	0.408													23	51					0	0	1	0	0	
EDN2	1907	broad.mit.edu	37	1	41949772	41949772	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:41949772T>C	uc001cgx.2	-	2	239	c.167A>G	c.(166-168)GAC>GGC	p.D56G	EDN2_uc001cgu.2_RNA|EDN2_uc001cgv.2_RNA|EDN2_uc009vwh.2_5'UTR|EDN2_uc001cgw.2_RNA|EDN2_uc009vwi.2_RNA|EDN2_uc009vwj.2_RNA	NM_001956	NP_001947	P20800	EDN2_HUMAN	endothelin 2 preproprotein	56					artery smooth muscle contraction|calcium-mediated signaling|cytokine-mediated signaling pathway|elevation of cytosolic calcium ion concentration|hormonal regulation of the force of heart contraction|inositol phosphate-mediated signaling|macrophage activation|macrophage chemotaxis|neutrophil chemotaxis|positive regulation of cell proliferation|positive regulation of heart rate|positive regulation of leukocyte chemotaxis|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of the force of heart contraction by chemical signal|prostaglandin biosynthetic process|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space	endothelin B receptor binding|hormone activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCACTCCTTGTCGAGCCAGGA	0.632													9	17					0	0	1	0	0	
HIVEP3	59269	broad.mit.edu	37	1	42049380	42049380	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:42049380C>A	uc001cgz.3	-	4	2302	c.1089G>T	c.(1087-1089)AAG>AAT	p.K363N	HIVEP3_uc001cha.3_Missense_Mutation_p.K363N|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	363	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGAGGGCCAGCTTCTGCTTAA	0.557													31	58					2.65835e-16	3.05131e-16	1	1	0	
RIMKLA	284716	broad.mit.edu	37	1	42880351	42880351	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:42880351C>A	uc001chi.2	+	5	1020	c.882C>A	c.(880-882)ATC>ATA	p.I294I		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	294	ATP-grasp.				protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						TGGGTGGGATCATTGCAGACT	0.512													69	116					3.30712e-30	4.04176e-30	1	1	0	
ZMYND12	84217	broad.mit.edu	37	1	42914271	42914271	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:42914271T>G	uc001chj.2	-	3	561	c.291A>C	c.(289-291)AAA>AAC	p.K97N	ZMYND12_uc010ojt.1_Intron	NM_032257	NP_115633	Q9H0C1	ZMY12_HUMAN	zinc finger, MYND-type containing 12 isoform 1	97						intracellular	zinc ion binding			ovary(1)	1	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CAAAGAGGTATTTCTGGGCTA	0.463													22	45					0	0	1	0	0	
CCDC30	728621	broad.mit.edu	37	1	43011180	43011180	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:43011180G>T	uc009vwk.1	+	4	465	c.355G>T	c.(355-357)GAT>TAT	p.D119Y	CCDC30_uc001chm.2_5'UTR|CCDC30_uc001chn.2_Intron|CCDC30_uc010oju.1_RNA|CCDC30_uc001chp.2_Intron	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	119											0						TACCTGTAAAGATCCTGAATC	0.338													26	56					9.57634e-11	1.04293e-10	1	1	0	
SLC2A1	6513	broad.mit.edu	37	1	43396474	43396474	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:43396474C>T	uc001cik.2	-	4	864	c.339G>A	c.(337-339)TCG>TCA	p.S113S		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	113	Helical; Name=3; (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	TGCCCAGTTTCGAGAAGCCCA	0.587													10	22					0	0	1	0	0	
WDR65	149465	broad.mit.edu	37	1	43647389	43647389	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:43647389T>G	uc001cip.1	+	3	463	c.342T>G	c.(340-342)GCT>GCG	p.A114A	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Silent_p.A103A|WDR65_uc001ciq.1_Silent_p.A114A	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	114	WD 1.									skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTAGCATGGCTTTTTCTCCAG	0.408													35	109					0	0	1	0	0	
TIE1	7075	broad.mit.edu	37	1	43775110	43775110	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:43775110C>T	uc001ciu.2	+	9	1319	c.1240C>T	c.(1240-1242)CCC>TCC	p.P414S	TIE1_uc010okd.1_Missense_Mutation_p.P414S|TIE1_uc010oke.1_Missense_Mutation_p.P369S|TIE1_uc009vwq.2_Missense_Mutation_p.P370S|TIE1_uc010okf.1_Missense_Mutation_p.P59S|TIE1_uc010okg.1_Missense_Mutation_p.P59S|TIE1_uc010okc.1_3'UTR	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	414	Ig-like C2-type 2.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GTTCGAGGTGCCCCGCTTGGT	0.592													21	28					0	0	1	0	0	
KIAA0467	23334	broad.mit.edu	37	1	43908278	43908278	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:43908278C>T	uc001cjk.1	+	43	5905	c.5443C>T	c.(5443-5445)CGA>TGA	p.R1815*		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2714						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CTTCCCCGTGCGAGATGAAAA	0.517													51	85					0	0	1	0	0	
KDM4A	9682	broad.mit.edu	37	1	44156616	44156616	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:44156616C>T	uc001cjx.2	+	14	2304	c.2138C>T	c.(2137-2139)TCG>TTG	p.S713L	KDM4A_uc010oki.1_Intron	NM_014663	NP_055478	O75164	KDM4A_HUMAN	jumonji domain containing 2A	713	PHD-type 1.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1						TGCTTCACTTCGACTGGCTGC	0.493													102	253					0	0	1	0	0	
SLC6A9	6536	broad.mit.edu	37	1	44463386	44463386	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:44463386C>A	uc001cll.2	-	14	2144	c.1952G>T	c.(1951-1953)AGC>ATC	p.S651I	SLC6A9_uc009vxe.2_Intron|SLC6A9_uc010okm.1_Intron|SLC6A9_uc001clm.2_Missense_Mutation_p.S597I|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Missense_Mutation_p.S582I|SLC6A9_uc001cln.2_Missense_Mutation_p.S578I|SLC6A9_uc010oko.1_Missense_Mutation_p.S467I	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	651	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	CCAGTCTCTGCTTGGCTTTGT	0.657													51	99					4.86159e-25	5.85421e-25	1	1	0	
TMEM53	79639	broad.mit.edu	37	1	45120404	45120404	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:45120404C>T	uc001cmc.2	-	3	697	c.661G>A	c.(661-663)GAA>AAA	p.E221K	TMEM53_uc001cmb.1_Intron|TMEM53_uc001cmd.2_Missense_Mutation_p.E148K|TMEM53_uc009vxh.1_Missense_Mutation_p.E104K|TMEM53_uc010ola.1_Missense_Mutation_p.E104K	NM_024587	NP_078863	Q6P2H8	TMM53_HUMAN	transmembrane protein 53	221						integral to membrane				ovary(2)	2	Acute lymphoblastic leukemia(166;0.155)					AGGACTACTTCGTCAGCCCTC	0.612													43	72					0	0	1	0	0	
PTCH2	8643	broad.mit.edu	37	1	45292046	45292046	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:45292046G>A	uc010olf.1	-	19	3002	c.2990C>T	c.(2989-2991)GCG>GTG	p.A997V	PTCH2_uc010olg.1_Missense_Mutation_p.A695V	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	997	Helical; (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					TGTCATCATCGCCAGGACCAG	0.602									Basal_Cell_Nevus_syndrome				27	66					0	0	1	0	0	
PRDX1	5052	broad.mit.edu	37	1	45977024	45977024	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:45977024C>A	uc001cnz.2	-	5	609	c.577G>T	c.(577-579)GAA>TAA	p.E193*	PRDX1_uc001coa.2_Nonsense_Mutation_p.E193*|PRDX1_uc001cob.2_Nonsense_Mutation_p.E193*|PRDX1_uc001coc.2_Nonsense_Mutation_p.E193*	NM_181697	NP_859048	Q06830	PRDX1_HUMAN	peroxiredoxin 1	193					cell proliferation|cell redox homeostasis|hydrogen peroxide catabolic process|skeletal system development	melanosome|mitochondrion|nucleus	protein binding|thioredoxin peroxidase activity				0	Acute lymphoblastic leukemia(166;0.155)					GAGAAATATTCTTTGCTCTTT	0.463													91	233					6.42612e-47	7.99071e-47	1	1	0	
NASP	4678	broad.mit.edu	37	1	46073549	46073549	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:46073549A>C	uc001coi.1	+	6	1068	c.966A>C	c.(964-966)GAA>GAC	p.E322D	NASP_uc010olq.1_Missense_Mutation_p.E285D|NASP_uc001coh.1_Missense_Mutation_p.E324D|NASP_uc001coj.1_Intron|NASP_uc010olr.1_Missense_Mutation_p.E258D|NASP_uc001cok.1_Missense_Mutation_p.E205D	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	322	Glu-rich (acidic).				blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					TTACCTCTGAAAACGAGGCAG	0.547													21	60					0	0	1	0	0	
MAST2	23139	broad.mit.edu	37	1	46496777	46496777	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:46496777C>T	uc001cov.2	+	23	3090	c.2807C>T	c.(2806-2808)GCG>GTG	p.A936V	MAST2_uc001cow.2_Missense_Mutation_p.A936V|MAST2_uc001coy.1_Missense_Mutation_p.A610V|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	936					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					CTCCTGGATGCGCCTCGGTTC	0.627													13	21					0	0	1	0	0	
PIK3R3	8503	broad.mit.edu	37	1	46521530	46521530	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:46521530T>G	uc001cpb.3	-	7	1634	c.878A>C	c.(877-879)AAA>ACA	p.K293T	PIK3R3_uc009vyb.2_Intron|PIK3R3_uc009vyc.2_Missense_Mutation_p.K310T|PIK3R3_uc001cpc.3_Missense_Mutation_p.K293T|PIK3R3_uc010olw.1_Missense_Mutation_p.K339T|PIK3R3_uc010olv.1_Missense_Mutation_p.K83T	NM_003629	NP_003620	Q92569	P55G_HUMAN	phosphoinositide-3-kinase, regulatory subunit 3	293					insulin receptor signaling pathway|platelet activation|T cell costimulation		1-phosphatidylinositol-3-kinase activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					ATTCATTTTTTTATCTATTTC	0.413													42	69					0	0	1	0	0	
PIK3R3	8503	broad.mit.edu	37	1	46531771	46531771	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:46531771A>G	uc001cpb.3	-	5	1332	c.576T>C	c.(574-576)AGT>AGC	p.S192S	PIK3R3_uc009vyb.2_Silent_p.S192S|PIK3R3_uc009vyc.2_Silent_p.S209S|PIK3R3_uc001cpc.3_Silent_p.S192S|PIK3R3_uc010olw.1_Silent_p.S238S	NM_003629	NP_003620	Q92569	P55G_HUMAN	phosphoinositide-3-kinase, regulatory subunit 3	192					insulin receptor signaling pathway|platelet activation|T cell costimulation		1-phosphatidylinositol-3-kinase activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					CATACTCTTTACTCTTCTCCT	0.323													36	80					0	0	1	0	0	
MKNK1	8569	broad.mit.edu	37	1	47027233	47027233	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:47027233C>A	uc001cqb.2	-	12	1289	c.1045G>T	c.(1045-1047)GAC>TAC	p.D349Y	MKNK1_uc010omd.1_Missense_Mutation_p.D213Y|MKNK1_uc001cqc.2_Missense_Mutation_p.D308Y|MKNK1_uc009vyi.2_Missense_Mutation_p.D308Y|MKNK1_uc010ome.1_Missense_Mutation_p.D213Y|MKNK1_uc009vyj.2_3'UTR	NM_003684	NP_003675	Q9BUB5	MKNK1_HUMAN	MAP kinase-interacting serine/threonine kinase 1	349	Protein kinase.				intracellular protein kinase cascade|peptidyl-serine phosphorylation|regulation of translation	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2	Acute lymphoblastic leukemia(166;0.155)					GAGATGAGGTCTTTGGCTTCA	0.527													21	45					3.62473e-10	3.92412e-10	1	1	0	
CYP4B1	1580	broad.mit.edu	37	1	47283819	47283819	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:47283819G>A	uc001cqm.3	+	11	1370	c.1286G>A	c.(1285-1287)CGC>CAC	p.R429H	CYP4B1_uc001cqn.3_Missense_Mutation_p.R430H|CYP4B1_uc009vym.2_Missense_Mutation_p.R415H|CYP4B1_uc010omk.1_Missense_Mutation_p.R266H	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	429					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GACTCTCTGCGCTTTTCCACT	0.572													30	75					0	0	1	0	0	
CYP4B1	1580	broad.mit.edu	37	1	47284422	47284422	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:47284422T>C	uc001cqm.3	+	12	1556	c.1472T>C	c.(1471-1473)GTC>GCC	p.V491A	CYP4B1_uc001cqn.3_Missense_Mutation_p.V492A|CYP4B1_uc009vym.2_Missense_Mutation_p.V477A|CYP4B1_uc010omk.1_Missense_Mutation_p.V328A	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	491					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CCCCAGCTTGTCCTGCGCTCC	0.577													46	82					0	0	1	0	0	
CYP4Z1	199974	broad.mit.edu	37	1	47564769	47564769	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:47564769G>A	uc001cqu.1	+	8	883	c.880G>A	c.(880-882)GAA>AAA	p.E294K		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	294	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						TTTTTAGAGCGAAAACACCAA	0.368													51	83					0	0	1	0	0	
STIL	6491	broad.mit.edu	37	1	47735473	47735473	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:47735473C>T	uc001crc.1	-	14	2604	c.2449G>A	c.(2449-2451)GAT>AAT	p.D817N	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.D770N|STIL_uc010omo.1_Missense_Mutation_p.D817N|STIL_uc001crd.1_Missense_Mutation_p.D817N|STIL_uc001cre.1_Missense_Mutation_p.D817N|STIL_uc001crf.1_Missense_Mutation_p.D430N|STIL_uc001crg.1_Missense_Mutation_p.D770N	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	817					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				ATTTTGGTATCATCTTGCTTC	0.368													27	87					0	0	1	0	0	
STIL	6491	broad.mit.edu	37	1	47746069	47746069	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:47746069T>C	uc001crc.1	-	12	2216	c.2061A>G	c.(2059-2061)AGA>AGG	p.R687R	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Silent_p.R640R|STIL_uc010omo.1_Silent_p.R687R|STIL_uc001crd.1_Silent_p.R687R|STIL_uc001cre.1_Silent_p.R687R|STIL_uc001crf.1_Silent_p.R300R|STIL_uc001crg.1_Silent_p.R640R	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	687	PIN1-binding (By similarity).				cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				GTGAAGGCGGTCTTGCCACAG	0.483													65	102					0	0	1	0	0	
STIL	6491	broad.mit.edu	37	1	47767944	47767944	+	Missense_Mutation	SNP	G	A	A	rs147160336	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:47767944G>A	uc001crc.1	-	4	382	c.227C>T	c.(226-228)TCG>TTG	p.S76L	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.S76L|STIL_uc010omo.1_Missense_Mutation_p.S76L|STIL_uc001crd.1_Missense_Mutation_p.S76L|STIL_uc001cre.1_Missense_Mutation_p.S76L|STIL_uc001crg.1_Missense_Mutation_p.S76L	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	76					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				AAAGCATGACGAATTTTTTTT	0.303													29	41					0	0	1	0	0	
SPATA6	54558	broad.mit.edu	37	1	48821347	48821347	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:48821347A>C	uc001crr.1	-	11	1354	c.1189T>G	c.(1189-1191)TTA>GTA	p.L397V	SPATA6_uc001crs.1_Intron|SPATA6_uc010omv.1_Missense_Mutation_p.L383V	NM_019073	NP_061946	Q9NWH7	SPAT6_HUMAN	spermatogenesis associated 6 precursor	397					cell differentiation|multicellular organismal development|spermatogenesis	extracellular region				ovary(1)	1						CTAACATATAAATGTCTTTGA	0.343													20	46					0	0	1	0	0	
AGBL4	84871	broad.mit.edu	37	1	49100248	49100248	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:49100248G>A	uc001cru.2	-	9	1026	c.868C>T	c.(868-870)CGT>TGT	p.R290C	AGBL4_uc010omw.1_Missense_Mutation_p.R23C|AGBL4_uc010omx.1_Missense_Mutation_p.R302C|AGBL4_uc001crv.1_Missense_Mutation_p.R143C|AGBL4_uc010omy.1_Missense_Mutation_p.R113C	NM_032785	NP_116174	Q5VU57	CBPC6_HUMAN	ATP/GTP binding protein-like 4	290					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2				Colorectal(2;0.00349)|COAD - Colon adenocarcinoma(2;0.0037)		AGCCAGTGACGATTCAGATCA	0.463													6	16					0	0	1	0	0	
EPS15	2060	broad.mit.edu	37	1	51826915	51826915	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:51826915A>G	uc001csq.1	-	24	2564	c.2472T>C	c.(2470-2472)TGT>TGC	p.C824C	EPS15_uc009vyz.1_Silent_p.C690C|EPS15_uc001csp.3_Silent_p.C510C	NM_001981	NP_001972	P42566	EPS15_HUMAN	epidermal growth factor receptor pathway	824	15 X 3 AA repeats of D-P-F.|Pro-rich.				cell proliferation|clathrin coat assembly|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|protein transport	cytosol|early endosome membrane	calcium ion binding|SH3 domain binding			lung(1)|kidney(1)	2						TGAATGGATCACAAAATATTT	0.413			T	MLL	ALL								43	72					0	0	1	0	0	
OSBPL9	114883	broad.mit.edu	37	1	52253122	52253122	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:52253122C>T	uc001cst.2	+	23	2117	c.2098C>T	c.(2098-2100)CGA>TGA	p.R700*	OSBPL9_uc001css.2_Nonsense_Mutation_p.R705*|OSBPL9_uc001csx.2_RNA|OSBPL9_uc009vza.2_Nonsense_Mutation_p.R701*|OSBPL9_uc001csu.2_Nonsense_Mutation_p.R710*|OSBPL9_uc001csv.2_Nonsense_Mutation_p.R535*|OSBPL9_uc001csw.2_Nonsense_Mutation_p.R687*|OSBPL9_uc001csy.2_Nonsense_Mutation_p.R522*|OSBPL9_uc001csz.2_Nonsense_Mutation_p.R522*|OSBPL9_uc001cta.2_Nonsense_Mutation_p.R590*|OSBPL9_uc001ctb.2_Nonsense_Mutation_p.R485*	NM_024586	NP_078862	Q96SU4	OSBL9_HUMAN	oxysterol binding protein-like 9 isoform e	700					lipid transport		lipid binding			central_nervous_system(1)	1						AGCAGAAGCCCGAGAAAGGAA	0.448													45	96					0	0	1	0	0	
NRD1	4898	broad.mit.edu	37	1	52263977	52263977	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:52263977C>A	uc001ctc.3	-	24	3074	c.2752G>T	c.(2752-2754)GAA>TAA	p.E918*	NRD1_uc009vzb.2_Nonsense_Mutation_p.E613*|NRD1_uc001ctd.3_Nonsense_Mutation_p.E850*|NRD1_uc001cte.2_Nonsense_Mutation_p.E786*|NRD1_uc001ctf.2_Nonsense_Mutation_p.E850*|NRD1_uc010ong.1_RNA	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	849					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						GATTTGAATTCTTTGACGAAG	0.488													24	56					3.83957e-06	3.98502e-06	1	1	0	
NRD1	4898	broad.mit.edu	37	1	52272492	52272492	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:52272492T>G	uc001ctc.3	-	20	2610	c.2288A>C	c.(2287-2289)AAA>ACA	p.K763T	NRD1_uc009vzb.2_Missense_Mutation_p.K458T|NRD1_uc001ctd.3_Missense_Mutation_p.K695T|NRD1_uc001cte.2_Missense_Mutation_p.K631T|NRD1_uc001ctf.2_Missense_Mutation_p.K695T|NRD1_uc010ong.1_RNA	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	694					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						TTTGTTGTCTTTCTTATACCA	0.284													55	94					0	0	1	0	0	
KTI12	112970	broad.mit.edu	37	1	52498747	52498747	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:52498747T>G	uc001ctj.1	-	1	726	c.687A>C	c.(685-687)TTA>TTC	p.L229F	TXNDC12_uc001cti.2_Intron	NM_138417	NP_612426	Q96EK9	KTI12_HUMAN	KTI12 homolog, chromatin associated	229							ATP binding			central_nervous_system(2)	2						CCAAAGTGAATAAAGGCCGGT	0.622													27	84					0	0	1	0	0	
ZFYVE9	9372	broad.mit.edu	37	1	52703746	52703746	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:52703746G>A	uc001cto.2	+	4	829	c.657G>A	c.(655-657)CCG>CCA	p.P219P	ZFYVE9_uc001ctn.2_Silent_p.P219P|ZFYVE9_uc001ctp.2_Silent_p.P219P	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	219					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						TGAATAGACCGAAAACAGAGG	0.363													43	86					0	0	1	0	0	
CC2D1B	200014	broad.mit.edu	37	1	52822738	52822738	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:52822738G>A	uc001ctq.1	-	16	1969	c.1831C>T	c.(1831-1833)CGA>TGA	p.R611*	CC2D1B_uc001ctr.2_Nonsense_Mutation_p.R151*|CC2D1B_uc001cts.2_Nonsense_Mutation_p.R296*	NM_032449	NP_115825	Q5T0F9	C2D1B_HUMAN	coiled-coil and C2 domain containing 1B	611	Potential.									ovary(2)	2						TGGGAGAGTCGCAGGTCCTCA	0.597													7	12					0	0	1	0	0	
ZCCHC11	23318	broad.mit.edu	37	1	52981601	52981601	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:52981601C>A	uc001ctx.2	-	3	1078	c.844G>T	c.(844-846)GAA>TAA	p.E282*	ZCCHC11_uc001cty.2_Nonsense_Mutation_p.E282*|ZCCHC11_uc001ctz.2_Nonsense_Mutation_p.E282*|ZCCHC11_uc009vze.1_Nonsense_Mutation_p.E282*|ZCCHC11_uc009vzf.1_Nonsense_Mutation_p.E41*|ZCCHC11_uc001cub.2_Nonsense_Mutation_p.E282*|ZCCHC11_uc001cuc.2_RNA|ZCCHC11_uc001cud.2_Nonsense_Mutation_p.E282*	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	282					miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						TCTAAGCGTTCTTCTGCTTGT	0.383													41	85					3.76604e-16	4.31307e-16	1	1	0	
SCP2	6342	broad.mit.edu	37	1	53443987	53443987	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:53443987A>C	uc001cur.1	+	9	894	c.773A>C	c.(772-774)GAA>GCA	p.E258A	SCP2_uc001cus.1_RNA|SCP2_uc010ono.1_Missense_Mutation_p.E177A|SCP2_uc010onp.1_Missense_Mutation_p.E234A|SCP2_uc009vzi.1_Missense_Mutation_p.E214A|SCP2_uc001cuq.1_Missense_Mutation_p.E214A	NM_002979	NP_002970	P22307	NLTP_HUMAN	sterol carrier protein 2 isoform 1 proprotein	258					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|lipid transport	mitochondrion|nucleus|peroxisomal matrix	propanoyl-CoA C-acyltransferase activity|propionyl-CoA C2-trimethyltridecanoyltransferase activity|protein binding|sterol binding			breast(1)	1						TTGGCACAAGAAATGATGACT	0.378													21	42					0	0	1	0	0	
GLIS1	148979	broad.mit.edu	37	1	54060472	54060472	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:54060472G>A	uc001cvr.1	-	3	671	c.104C>T	c.(103-105)GCG>GTG	p.A35V		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	35					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GCAGGAAGGCGCAGGGGTGGC	0.716													7	13					0	0	1	0	0	
C1orf175	374977	broad.mit.edu	37	1	55167779	55167779	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:55167779G>A	uc010ooe.1	+	20	3626	c.3302G>A	c.(3301-3303)CGC>CAC	p.R1101H	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.R619H|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.R303H	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1101	HEAT 3.					integral to membrane	binding				0						GAGGTCGTGCGCTCCTCCTGC	0.617													3	18					0	0	1	0	0	
USP24	23358	broad.mit.edu	37	1	55624658	55624658	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:55624658G>A	uc001cyg.3	-	9	784	c.784C>T	c.(784-786)CGC>TGC	p.R262C		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	374					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						GGTTGGAAGCGCATGCAAAGT	0.378													9	8					0	0	1	0	0	
PRKAA2	5563	broad.mit.edu	37	1	57169927	57169927	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:57169927C>T	uc001cyk.3	+	7	1143	c.1072C>T	c.(1072-1074)CAT>TAT	p.H358Y		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	358					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						TAGTGCCATGCATATTCCCCC	0.458													38	56					0	0	1	0	0	
C1orf168	199920	broad.mit.edu	37	1	57192242	57192242	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:57192242A>G	uc001cym.3	-	16	2214	c.1808T>C	c.(1807-1809)CTG>CCG	p.L603P	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	603										ovary(3)|skin(2)	5						CCACATTTTCAGTTTATCTTC	0.348													28	64					0	0	1	0	0	
DAB1	1600	broad.mit.edu	37	1	57481012	57481012	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:57481012C>T	uc001cys.1	-	14	1662	c.988G>A	c.(988-990)GCT>ACT	p.A330T	DAB1_uc001cyt.1_Missense_Mutation_p.A328T|DAB1_uc001cyq.1_Missense_Mutation_p.A328T|DAB1_uc001cyr.1_Missense_Mutation_p.A244T|DAB1_uc009vzw.1_Missense_Mutation_p.A312T|DAB1_uc009vzx.1_Missense_Mutation_p.A330T	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	363					cell differentiation|nervous system development					skin(2)|ovary(1)	3						ATCACCTGAGCGACTGGTGGC	0.662													20	53					0	0	1	0	0	
MYSM1	114803	broad.mit.edu	37	1	59125684	59125684	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:59125684C>A	uc009wab.1	-	20	2495	c.2472G>T	c.(2470-2472)AAG>AAT	p.K824N	uc001cza.2_5'Flank|MYSM1_uc009waa.1_Missense_Mutation_p.K230N|MYSM1_uc001czc.2_RNA	NM_001085487	NP_001078956	Q5VVJ2	MYSM1_HUMAN	Myb-like, SWIRM and MPN domains 1	824					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin remodeling complex	DNA binding|histone binding|metal ion binding|metallopeptidase activity|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(1)	1	all_cancers(7;9.36e-06)					TTAACAATTCCTTTGTACAGT	0.294													16	45					1.15088e-07	1.20949e-07	1	1	0	
MYSM1	114803	broad.mit.edu	37	1	59154730	59154730	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:59154730C>A	uc009wab.1	-	6	402	c.379G>T	c.(379-381)GAG>TAG	p.E127*	MYSM1_uc001czc.2_RNA|MYSM1_uc001czd.2_3'UTR	NM_001085487	NP_001078956	Q5VVJ2	MYSM1_HUMAN	Myb-like, SWIRM and MPN domains 1	127	SANT.				histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin remodeling complex	DNA binding|histone binding|metal ion binding|metallopeptidase activity|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(1)	1	all_cancers(7;9.36e-06)					TCAAACAGCTCTTTTTCTTCT	0.308													12	27					0.00185496	0.00188044	1	1	0	
INADL	10207	broad.mit.edu	37	1	62367109	62367109	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:62367109A>C	uc001dab.2	+	24	3473	c.3359A>C	c.(3358-3360)AAA>ACA	p.K1120T	INADL_uc009waf.1_Missense_Mutation_p.K1120T|INADL_uc001daa.2_Missense_Mutation_p.K1120T|INADL_uc001dad.3_Missense_Mutation_p.K817T|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1120	PDZ 6.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						AACGCACTTAAAACTGGAGAT	0.338													27	45					0	0	1	0	0	
INADL	10207	broad.mit.edu	37	1	62586964	62586964	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:62586964T>G	uc001dab.2	+	38	5116	c.5002T>G	c.(5002-5004)TCA>GCA	p.S1668A	INADL_uc001dac.2_RNA|INADL_uc009wag.2_Missense_Mutation_p.S452A	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1668					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CCAGAAAAATTCAGGTATTAC	0.398													23	50					0	0	1	0	0	
USP1	7398	broad.mit.edu	37	1	62910637	62910637	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:62910637G>T	uc001daj.1	+	6	1114	c.786G>T	c.(784-786)GAG>GAT	p.E262D	USP1_uc001dak.1_Missense_Mutation_p.E262D|USP1_uc001dal.1_Missense_Mutation_p.E262D	NM_001017415	NP_001017415	O94782	UBP1_HUMAN	ubiquitin specific protease 1	262					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		ACTTTAAAGAGAAACTCCCAA	0.358													24	65					7.33628e-21	8.67351e-21	1	1	0	
USP1	7398	broad.mit.edu	37	1	62910879	62910879	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:62910879A>C	uc001daj.1	+	6	1356	c.1028A>C	c.(1027-1029)AAG>ACG	p.K343T	USP1_uc001dak.1_Missense_Mutation_p.K343T|USP1_uc001dal.1_Missense_Mutation_p.K343T	NM_001017415	NP_001017415	O94782	UBP1_HUMAN	ubiquitin specific protease 1	343					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		AATTGGTTAAAGTCTGCAACT	0.328													27	42					0	0	1	0	0	
DOCK7	85440	broad.mit.edu	37	1	62979530	62979530	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:62979530G>A	uc001daq.2	-	32	4010	c.3976C>T	c.(3976-3978)CGA>TGA	p.R1326*	DOCK7_uc001dan.2_Nonsense_Mutation_p.R1187*|DOCK7_uc001dao.2_Nonsense_Mutation_p.R1187*|DOCK7_uc001dap.2_Nonsense_Mutation_p.R1295*|DOCK7_uc001dam.2_Nonsense_Mutation_p.R506*|DOCK7_uc010oov.1_Intron	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	1326					activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						AAAAGGCTTCGACTTGATTCT	0.408													47	109					0	0	1	0	0	
DOCK7	85440	broad.mit.edu	37	1	63024812	63024812	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:63024812C>T	uc001daq.2	-	20	2313	c.2279G>A	c.(2278-2280)CGA>CAA	p.R760Q	DOCK7_uc001dan.2_Missense_Mutation_p.R652Q|DOCK7_uc001dao.2_Missense_Mutation_p.R652Q|DOCK7_uc001dap.2_Missense_Mutation_p.R760Q	NM_033407	NP_212132	Q96N67	DOCK7_HUMAN	dedicator of cytokinesis 7	760	DHR-1.				activation of Rac GTPase activity|axonogenesis|establishment of neuroblast polarity|microtubule cytoskeleton organization|positive regulation of peptidyl-serine phosphorylation	axon|basal part of cell|growth cone	GTP binding|guanyl-nucleotide exchange factor activity|Rac GTPase binding			ovary(2)	2						TTCCATGATTCGCATGTCCCC	0.393													10	41					0	0	1	0	0	
ATG4C	84938	broad.mit.edu	37	1	63269479	63269479	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:63269479G>T	uc001dat.2	+	2	184	c.22G>T	c.(22-24)GAA>TAA	p.E8*	ATG4C_uc001dau.2_Nonsense_Mutation_p.E8*	NM_178221	NP_835739	Q96DT6	ATG4C_HUMAN	APG4 autophagy 4 homolog C isoform 8	8					autophagic vacuole assembly|protein targeting to membrane|proteolysis	cytosol|extracellular region	cysteine-type endopeptidase activity			ovary(1)	1						AGGAACAGATGAAGTTGACAA	0.279													28	39					2.49675e-24	2.99771e-24	1	1	0	
ATG4C	84938	broad.mit.edu	37	1	63282366	63282366	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:63282366A>C	uc001dat.2	+	4	443	c.281A>C	c.(280-282)GAA>GCA	p.E94A	ATG4C_uc001dau.2_Missense_Mutation_p.E94A	NM_178221	NP_835739	Q96DT6	ATG4C_HUMAN	APG4 autophagy 4 homolog C isoform 8	94					autophagic vacuole assembly|protein targeting to membrane|proteolysis	cytosol|extracellular region	cysteine-type endopeptidase activity			ovary(1)	1						TACAGGGAAGAATTCCCTCAA	0.448													22	51					0	0	1	0	0	
ALG6	29929	broad.mit.edu	37	1	63872011	63872011	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:63872011T>C	uc010oow.1	+	6	675	c.370T>C	c.(370-372)TAC>CAC	p.Y124H	ALG6_uc001daz.2_RNA|ALG6_uc009waj.2_RNA	NM_013339	NP_037471	Q9Y672	ALG6_HUMAN	dolichyl pyrophosphate Man9GlcNAc2	124	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity				0						TCTGCTGATTTACATACCTGC	0.378													27	68					0	0	1	0	0	
CACHD1	57685	broad.mit.edu	37	1	65016280	65016280	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:65016280A>G	uc001dbo.1	+	2	154	c.49A>G	c.(49-51)ATA>GTA	p.I17V	CACHD1_uc001dbp.1_5'UTR	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	68	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						ATTGCAGCGGATATTCAACTC	0.338													17	29					0	0	1	0	0	
AK3L1	205	broad.mit.edu	37	1	65691785	65691785	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:65691785G>A	uc001dby.2	+	6	844	c.597G>A	c.(595-597)ACG>ACA	p.T199T	AK3L1_uc009wan.2_Silent_p.T147T|AK3L1_uc001dbz.2_Silent_p.T199T|AK3L1_uc001dca.2_Silent_p.T199T	NM_203464	NP_982289	P27144	KAD4_HUMAN	adenylate kinase 3-like 1 isoform 7	199						mitochondrial matrix	adenylate kinase activity|ATP binding|GTP binding				0						GAACGGAGACGAACAAAATCT	0.443													10	24					0	0	1	0	0	
DNAJC6	9829	broad.mit.edu	37	1	65878696	65878696	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:65878696G>A	uc001dcd.1	+	19	2894	c.2730G>A	c.(2728-2730)AAG>AAA	p.K910K	DNAJC6_uc010opc.1_Silent_p.K897K|DNAJC6_uc001dce.1_Silent_p.K967K	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	910	J.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						AAGGCCAAAAGCCCTTATATT	0.413													59	63					0	0	1	0	0	
LEPR	3953	broad.mit.edu	37	1	66081710	66081710	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:66081710C>A	uc001dci.2	+	15	2217	c.2015C>A	c.(2014-2016)TCA>TAA	p.S672*	LEPR_uc001dcg.2_Nonsense_Mutation_p.S672*|LEPR_uc001dch.2_Nonsense_Mutation_p.S672*|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Nonsense_Mutation_p.S672*|LEPR_uc001dck.2_Nonsense_Mutation_p.S672*	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	672	Extracellular (Potential).|Fibronectin type-III 3.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		AAAAATGACTCATTGTGCAGT	0.383													26	55					1.2476e-16	1.43726e-16	1	1	0	
LEPR	3953	broad.mit.edu	37	1	66081833	66081833	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:66081833C>T	uc001dci.2	+	15	2340	c.2138C>T	c.(2137-2139)ACG>ATG	p.T713M	LEPR_uc001dcg.2_Missense_Mutation_p.T713M|LEPR_uc001dch.2_Missense_Mutation_p.T713M|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.T713M|LEPR_uc001dck.2_Missense_Mutation_p.T713M	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	713	Extracellular (Potential).|Fibronectin type-III 3.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CATACTGTTACGGTTCTGGCC	0.408													22	54					0	0	1	0	0	
LEPR	3953	broad.mit.edu	37	1	66101895	66101895	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:66101895T>G	uc001dci.2	+	20	2897	c.2695T>G	c.(2695-2697)TTT>GTT	p.F899V	LEPR_uc009waq.2_Missense_Mutation_p.F172L	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	899	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGAGCATCTTTTTATCAAGCA	0.338													66	122					0	0	1	0	0	
TCTEX1D1	200132	broad.mit.edu	37	1	67243091	67243091	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67243091C>A	uc001dcv.2	+	5	625	c.494C>A	c.(493-495)TCT>TAT	p.S165Y	TCTEX1D1_uc009wau.2_RNA|TCTEX1D1_uc009wav.2_RNA	NM_152665	NP_689878	Q8N7M0	TC1D1_HUMAN	Tctex1 domain containing 1	165											0						TTCAGAAATTCTTCTCTCTTC	0.383													35	76					3.33393e-15	3.79275e-15	1	1	0	
WDR78	79819	broad.mit.edu	37	1	67292585	67292585	+	Missense_Mutation	SNP	C	T	T	rs139606017	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67292585C>T	uc001dcx.2	-	15	2313	c.2257G>A	c.(2257-2259)GTT>ATT	p.V753I	WDR78_uc009waw.2_Missense_Mutation_p.V466I|WDR78_uc009wax.2_RNA	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	753	WD 5.									ovary(2)	2						GACCAGGCAACGTCGTAAACA	0.393													58	97					0	0	1	0	0	
WDR78	79819	broad.mit.edu	37	1	67358960	67358960	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67358960C>G	uc001dcx.2	-	3	538	c.482G>C	c.(481-483)AGC>ACC	p.S161T	WDR78_uc001dcy.2_Missense_Mutation_p.S161T|WDR78_uc001dcz.2_Missense_Mutation_p.S161T|WDR78_uc009wax.2_5'Flank	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	161										ovary(2)	2						CTGATAAAGGCTATAGGAAGA	0.343													45	74					0	0	1	0	0	
C1orf141	400757	broad.mit.edu	37	1	67558934	67558934	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67558934C>A	uc001ddl.1	-	7	1068	c.957G>T	c.(955-957)CAG>CAT	p.Q319H	C1orf141_uc001ddm.1_Missense_Mutation_p.Q319H|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	319										ovary(1)	1						TAGAAAAATTCTGTGAGAAAT	0.333													32	83					7.11191e-15	8.05931e-15	1	1	0	
C1orf141	400757	broad.mit.edu	37	1	67559156	67559156	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67559156G>A	uc001ddl.1	-	7	846	c.735C>T	c.(733-735)TTC>TTT	p.F245F	C1orf141_uc001ddm.1_Silent_p.F245F|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	245										ovary(1)	1						TTTCTAAAATGAAATTTGTTC	0.289													13	24					0	0	1	0	0	
C1orf141	400757	broad.mit.edu	37	1	67561067	67561067	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67561067C>A	uc001ddl.1	-	6	565	c.454G>T	c.(454-456)GAA>TAA	p.E152*	C1orf141_uc001ddm.1_Nonsense_Mutation_p.E152*|C1orf141_uc001ddn.1_Intron	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	152										ovary(1)	1						GATTTGTTTTCTTTTATATTA	0.348													6	8					0.00116845	0.00118508	1	1	0	
IL23R	149233	broad.mit.edu	37	1	67635287	67635287	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67635287G>A	uc001ddo.2	+	3	418	c.333G>A	c.(331-333)GAG>GAA	p.E111E	IL23R_uc009waz.2_5'UTR|IL23R_uc001ddp.2_RNA|IL23R_uc010opi.1_RNA|IL23R_uc010opj.1_5'UTR|IL23R_uc010opk.1_Silent_p.E68E|IL23R_uc010opl.1_5'UTR|IL23R_uc010opm.1_RNA|IL23R_uc001ddq.2_5'UTR|IL23R_uc010opn.1_5'UTR|IL23R_uc001ddr.2_RNA	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor	111	Extracellular (Potential).				inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						ATTTTCAAGAGACACTGATAT	0.373													35	69					0	0	1	0	0	
IL12RB2	3595	broad.mit.edu	37	1	67786106	67786106	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67786106C>T	uc001ddu.2	+	2	695	c.55C>T	c.(55-57)CTG>TTG	p.L19L	IL12RB2_uc010oqi.1_Silent_p.L19L|IL12RB2_uc010oqj.1_Silent_p.L19L|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Silent_p.L19L|IL12RB2_uc010oqm.1_Silent_p.L19L|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	19					positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						AATCACGTGGCTGTTGATTAA	0.343													36	50					0	0	1	0	0	
IL12RB2	3595	broad.mit.edu	37	1	67804371	67804371	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67804371T>G	uc001ddu.2	+	8	1663	c.1023T>G	c.(1021-1023)ATT>ATG	p.I341M	IL12RB2_uc010oqi.1_Missense_Mutation_p.I341M|IL12RB2_uc010oqj.1_Missense_Mutation_p.I341M|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Missense_Mutation_p.I341M|IL12RB2_uc010oqm.1_Missense_Mutation_p.I341M|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	341	Fibronectin type-III 3.|Extracellular (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						GACAACAGATTTCTCTTTTCT	0.358													21	50					0	0	1	0	0	
IL12RB2	3595	broad.mit.edu	37	1	67816583	67816583	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67816583A>C	uc001ddu.2	+	9	1709	c.1069A>C	c.(1069-1071)ATT>CTT	p.I357L	IL12RB2_uc010oqi.1_Missense_Mutation_p.I357L|IL12RB2_uc010oqj.1_Missense_Mutation_p.I357L|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Missense_Mutation_p.I357L|IL12RB2_uc010oqm.1_Missense_Mutation_p.I357L|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	357	Fibronectin type-III 3.|Extracellular (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						AAGAGGAAAAATTCTCCACTA	0.478													26	56					0	0	1	0	0	
SERBP1	26135	broad.mit.edu	37	1	67880971	67880971	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:67880971C>A	uc001ddv.2	-	7	1188	c.1048G>T	c.(1048-1050)GAT>TAT	p.D350Y	SERBP1_uc001ddx.2_Missense_Mutation_p.D344Y|SERBP1_uc001ddy.2_Missense_Mutation_p.D329Y|SERBP1_uc001ddw.2_Missense_Mutation_p.D335Y	NM_001018067	NP_001018077	Q8NC51	PAIRB_HUMAN	SERPINE1 mRNA binding protein 1 isoform 1	350					regulation of mRNA stability	nucleus|perinuclear region of cytoplasm	mRNA 3'-UTR binding|protein binding			skin(1)	1						GACGTTATATCATTTGCTGGC	0.488													47	89					4.86159e-25	5.85421e-25	1	1	0	
WLS	79971	broad.mit.edu	37	1	68659690	68659690	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:68659690G>A	uc001def.1	-	2	598	c.327C>T	c.(325-327)TTC>TTT	p.F109F	uc001deb.1_Intron|uc001dec.1_Intron|WLS_uc001dee.2_Silent_p.F107F|WLS_uc001deg.1_Intron|WLS_uc001deh.1_Silent_p.F109F|WLS_uc009wbf.1_Silent_p.F64F	NM_024911	NP_079187	Q5T9L3	WLS_HUMAN	G protein-coupled receptor 177 isoform 1	109	Lumenal (Potential).|Interacts with Wnt proteins (By similarity).				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Wnt receptor signaling pathway	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	signal transducer activity				0						TAAACAGCATGAATTGGAACC	0.453													19	61					0	0	1	0	0	
LRRC7	57554	broad.mit.edu	37	1	70502292	70502292	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:70502292C>T	uc001dep.2	+	18	2189	c.2159C>T	c.(2158-2160)TCT>TTT	p.S720F	LRRC7_uc009wbg.2_Intron|LRRC7_uc001deq.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	720						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GTACATAATTCTTTGTGGGGT	0.403													48	76					0	0	1	0	0	
LRRC7	57554	broad.mit.edu	37	1	70504011	70504011	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:70504011C>T	uc001dep.2	+	19	2420	c.2390C>T	c.(2389-2391)TCG>TTG	p.S797L	LRRC7_uc009wbg.2_Missense_Mutation_p.S81L|LRRC7_uc001deq.2_Missense_Mutation_p.S38L	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	797						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CTCTTAAGTTCGAAATCTAGA	0.488													57	87					0	0	1	0	0	
ANKRD13C	81573	broad.mit.edu	37	1	70742520	70742520	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:70742520C>T	uc001dex.3	-	10	1549	c.1223G>A	c.(1222-1224)CGA>CAA	p.R408Q	ANKRD13C_uc009wbk.2_Missense_Mutation_p.R373Q	NM_030816	NP_110443	Q8N6S4	AN13C_HUMAN	ankyrin repeat domain 13C	408					protein retention in ER lumen|regulation of anoikis|regulation of receptor biosynthetic process	endoplasmic reticulum membrane|perinuclear region of cytoplasm	receptor binding				0						AGACTGTCTTCGAATCGGCTG	0.313													16	25					0	0	1	0	0	
PTGER3	5733	broad.mit.edu	37	1	71513120	71513120	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:71513120G>A	uc001dfg.1	-	1	372	c.141C>T	c.(139-141)TGC>TGT	p.C47C	PTGER3_uc001dfh.1_RNA|PTGER3_uc001dfi.1_RNA|PTGER3_uc001dfj.1_RNA|PTGER3_uc001dfk.1_Silent_p.C47C|PTGER3_uc001dfl.1_Silent_p.C47C|PTGER3_uc009wbm.1_Silent_p.C47C|PTGER3_uc001dfm.1_RNA|PTGER3_uc001dfn.2_Silent_p.C47C|PTGER3_uc009wbn.1_Silent_p.C47C|PTGER3_uc009wbo.2_Silent_p.C47C|PTGER3_uc001dfo.2_Silent_p.C47C|PTGER3_uc001dfp.1_Silent_p.C47C|PTGER3_uc001dfq.2_Silent_p.C47C|uc001dfr.2_RNA	NM_198714	NP_942007	P43115	PE2R3_HUMAN	prostaglandin E receptor 3, subtype EP3 isoform	47	Extracellular (Potential).				cell death|positive regulation of fever generation|transcription, DNA-dependent	integral to plasma membrane|nuclear envelope	ligand-dependent nuclear receptor activity|prostaglandin E receptor activity			pancreas(1)|lung(1)|skin(1)	3					Bimatoprost(DB00905)	ACACCGATCCGCAATCCTCGC	0.692													4	13					0	0	1	0	0	
TNNI3K	51086	broad.mit.edu	37	1	74901807	74901807	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:74901807G>T	uc001dgf.1	+	18	1867	c.1816G>T	c.(1816-1818)GAT>TAT	p.D606Y	TNNI3K_uc001dgd.2_Missense_Mutation_p.D707Y|TNNI3K_uc001dge.1_Missense_Mutation_p.D707Y	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	606	Protein kinase.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TGTGGTGGCAGATTTTGGAGG	0.368													29	77					4.3181e-19	5.06354e-19	1	1	0	
C1orf173	127254	broad.mit.edu	37	1	75038351	75038351	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:75038351C>T	uc001dgg.2	-	14	3262	c.3043G>A	c.(3043-3045)GAA>AAA	p.E1015K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1015	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGGCTTCCTTCCTCAGGGCTG	0.512													46	103					0	0	1	0	0	
C1orf173	127254	broad.mit.edu	37	1	75039081	75039081	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:75039081C>A	uc001dgg.2	-	14	2532	c.2313G>T	c.(2311-2313)AAG>AAT	p.K771N		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	771	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTGCTTCTTTCTTCTCCAGTG	0.468													36	81					9.45814e-24	1.13393e-23	1	1	0	
C1orf173	127254	broad.mit.edu	37	1	75055504	75055504	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:75055504C>T	uc001dgg.2	-	12	2206	c.1987G>A	c.(1987-1989)GAA>AAA	p.E663K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E457K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	663	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCAAAGCTTTCGTCTATTGGC	0.408													43	89					0	0	1	0	0	
C1orf173	127254	broad.mit.edu	37	1	75097446	75097446	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:75097446C>A	uc001dgg.2	-	7	989	c.770G>T	c.(769-771)AGA>ATA	p.R257I	C1orf173_uc001dgi.3_Missense_Mutation_p.R51I	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	257	Poly-Arg.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGGACGAAATCTTCTCCTTCT	0.373													30	58					5.8336e-16	6.67442e-16	1	1	0	
C1orf173	127254	broad.mit.edu	37	1	75097470	75097470	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:75097470C>A	uc001dgg.2	-	7	965	c.746G>T	c.(745-747)AGA>ATA	p.R249I	C1orf173_uc001dgi.3_Missense_Mutation_p.R43I	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	249										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGTTTCAGATCTATTTTCTCT	0.378													26	55					1.1804e-14	1.33524e-14	1	1	0	
TYW3	127253	broad.mit.edu	37	1	75229792	75229792	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:75229792T>G	uc001dgn.2	+	6	864	c.775T>G	c.(775-777)TAC>GAC	p.Y259D	TYW3_uc010oqw.1_Missense_Mutation_p.Y226D|TYW3_uc010oqx.1_Missense_Mutation_p.Y175D|TYW3_uc010oqy.1_RNA	NM_138467	NP_612476	Q6IPR3	TYW3_HUMAN	tRNA-yW synthesizing protein 3 homolog isoform	259					tRNA processing		methyltransferase activity			ovary(2)	2						CCCTGAAGATTACTAAGCTTT	0.358													27	54					0	0	1	0	0	
ACADM	34	broad.mit.edu	37	1	76199306	76199306	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:76199306C>A	uc001dgw.3	+	5	810	c.380C>A	c.(379-381)TCT>TAT	p.S127Y	ACADM_uc010orc.1_Intron|ACADM_uc010ord.1_Missense_Mutation_p.S41Y|ACADM_uc009wbp.2_Missense_Mutation_p.S131Y|ACADM_uc009wbr.2_Missense_Mutation_p.S160Y|ACADM_uc010ore.1_Missense_Mutation_p.S91Y|ACADM_uc010orf.1_Intron|ACADM_uc001dgx.3_Missense_Mutation_p.S41Y|ACADM_uc010org.1_Intron	NM_000016	NP_000007	P11310	ACADM_HUMAN	medium-chain acyl-CoA dehydrogenase isoform a	127					carnitine biosynthetic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|medium-chain fatty acid catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|identical protein binding|medium-chain-acyl-CoA dehydrogenase activity			breast(2)|ovary(1)|skin(1)	4						GAAGGAAATTCTTTGGGGGTA	0.363													36	97					3.62531e-18	4.23176e-18	1	1	0	
MSH4	4438	broad.mit.edu	37	1	76276403	76276403	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:76276403T>G	uc001dhd.1	+	4	651	c.610T>G	c.(610-612)TTA>GTA	p.L204V		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	204					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						ACTTAAAATTTTATCACCTTT	0.289								MMR					15	35					0	0	1	0	0	
ST6GALNAC3	256435	broad.mit.edu	37	1	76878054	76878054	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:76878054G>A	uc001dhh.2	+	3	738	c.575G>A	c.(574-576)CGC>CAC	p.R192H	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.R192H|ST6GALNAC3_uc010orh.1_Missense_Mutation_p.R127H	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	192	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						ACAGAGAAGCGCATGAGTTAC	0.403													22	53					0	0	1	0	0	
ZZZ3	26009	broad.mit.edu	37	1	78041751	78041751	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:78041751A>G	uc001dhq.2	-	12	2807	c.2331_splice	c.e12+1	p.S777_splice	ZZZ3_uc001dhr.2_Splice_Site_p.S283_splice|ZZZ3_uc001dhp.2_Splice_Site_p.S776_splice	NM_015534	NP_056349	Q8IYH5	ZZZ3_HUMAN	zinc finger, ZZ-type containing 3						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|large_intestine(1)	5						TGTATAACTTACTGATGCATC	0.353													20	87					0	0	1	0	0	
ZZZ3	26009	broad.mit.edu	37	1	78098028	78098028	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:78098028C>T	uc001dhq.2	-	5	1488	c.1012G>A	c.(1012-1014)GAA>AAA	p.E338K	ZZZ3_uc001dhr.2_Intron|ZZZ3_uc009wbz.1_Missense_Mutation_p.E338K|ZZZ3_uc001dhp.2_Missense_Mutation_p.E338K	NM_015534	NP_056349	Q8IYH5	ZZZ3_HUMAN	zinc finger, ZZ-type containing 3	338					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|large_intestine(1)	5						GTGTCCAGTTCGTTATTGGTG	0.443													56	107					0	0	1	0	0	
USP33	23032	broad.mit.edu	37	1	78180466	78180466	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:78180466T>G	uc001dht.2	-	20	2488	c.2141A>C	c.(2140-2142)AAG>ACG	p.K714T	USP33_uc001dhs.2_Missense_Mutation_p.K435T|USP33_uc001dhu.2_Missense_Mutation_p.K683T|USP33_uc001dhv.2_Missense_Mutation_p.K519T|USP33_uc001dhw.2_Missense_Mutation_p.K706T	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	714					axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						TTCGCTGCTCTTCCTATTAAG	0.328													28	59					0	0	1	0	0	
USP33	23032	broad.mit.edu	37	1	78195593	78195593	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:78195593A>G	uc001dht.2	-	10	1109	c.762T>C	c.(760-762)TTT>TTC	p.F254F	USP33_uc001dhs.2_5'Flank|USP33_uc001dhu.2_Silent_p.F223F|USP33_uc001dhv.2_Silent_p.F59F|USP33_uc001dhw.2_Silent_p.F254F	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	254					axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						TAATTCCTTGAAACAGAGTAG	0.274													33	73					0	0	1	0	0	
FAM73A	374986	broad.mit.edu	37	1	78325057	78325057	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:78325057C>T	uc001dhx.2	+	10	1206	c.1174C>T	c.(1174-1176)CGA>TGA	p.R392*	FAM73A_uc010ork.1_Nonsense_Mutation_p.R392*|FAM73A_uc010orl.1_Nonsense_Mutation_p.R354*|FAM73A_uc001dhy.1_3'UTR	NM_198549	NP_940951	Q8NAN2	FA73A_HUMAN	hypothetical protein LOC374986	392						integral to membrane				ovary(1)	1				Colorectal(170;0.226)		TCACTGTATTCGACAGGCTTT	0.408													20	62					0	0	1	0	0	
NEXN	91624	broad.mit.edu	37	1	78408391	78408391	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:78408391A>C	uc001dic.3	+	13	2202	c.1905A>C	c.(1903-1905)GAA>GAC	p.E635D	NEXN_uc001dib.3_Missense_Mutation_p.E571D|NEXN_uc001did.1_Missense_Mutation_p.E545D|NEXN_uc001dif.1_Missense_Mutation_p.E527D|NEXN_uc001dig.3_Missense_Mutation_p.E276D	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	635	Ig-like.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		AAAGGGGAGAAACTTACTGCC	0.398													33	68					0	0	1	0	0	
IFI44	10561	broad.mit.edu	37	1	79125147	79125147	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:79125147C>T	uc001dip.3	+	6	1115	c.991C>T	c.(991-993)CGA>TGA	p.R331*	IFI44_uc010orr.1_Nonsense_Mutation_p.R331*|IFI44_uc010ors.1_Nonsense_Mutation_p.R48*	NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	331				R -> Q (in Ref. 1; BAA06043).	response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						CAAAAGAATTCGAAGGGAGTT	0.398													17	32					0	0	1	0	0	
ELTD1	64123	broad.mit.edu	37	1	79383340	79383340	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:79383340T>C	uc001diq.3	-	12	1884	c.1728A>G	c.(1726-1728)GGA>GGG	p.G576G		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	576	Helical; Name=5; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		GGCATGCTGGTCCTATAAAAC	0.289													7	24					0	0	1	0	0	
ELTD1	64123	broad.mit.edu	37	1	79392576	79392576	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:79392576G>A	uc001diq.3	-	8	1234	c.1078C>T	c.(1078-1080)CGA>TGA	p.R360*		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	360	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		CTTACCTTTCGATGACTTAAT	0.353													10	38					0	0	1	0	0	
ELTD1	64123	broad.mit.edu	37	1	79392761	79392761	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:79392761G>A	uc001diq.3	-	8	1049	c.893C>T	c.(892-894)GCA>GTA	p.A298V		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	298	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		ATATACAAATGCAACTGCAAC	0.279													15	41					0	0	1	0	0	
LPHN2	23266	broad.mit.edu	37	1	82302724	82302724	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:82302724T>G	uc001dit.3	+	3	236	c.55T>G	c.(55-57)TTC>GTC	p.F19V	LPHN2_uc001dis.2_Missense_Mutation_p.F19V|LPHN2_uc001diu.2_Missense_Mutation_p.F19V|LPHN2_uc001div.2_Missense_Mutation_p.F19V|LPHN2_uc009wcd.2_Missense_Mutation_p.F19V	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	19					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TGTAATCAGCTTCTTACCAAA	0.328													21	36					0	0	1	0	0	
LPHN2	23266	broad.mit.edu	37	1	82409063	82409063	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:82409063G>T	uc001dit.3	+	6	989	c.808G>T	c.(808-810)GAA>TAA	p.E270*	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Nonsense_Mutation_p.E270*|LPHN2_uc001div.2_Nonsense_Mutation_p.E270*|LPHN2_uc009wcd.2_Nonsense_Mutation_p.E270*	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	270	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AGCAGTTGATGAAAATGGTTT	0.418													50	76					2.01807e-28	2.45391e-28	1	1	0	
TTLL7	79739	broad.mit.edu	37	1	84386821	84386821	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:84386821C>T	uc001djc.2	-	12	1709	c.1313G>A	c.(1312-1314)CGA>CAA	p.R438Q	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	438					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		GATCTGCTTTCGTACTTGAGC	0.318													29	53					0	0	1	0	0	
TTLL7	79739	broad.mit.edu	37	1	84399362	84399362	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:84399362C>T	uc001djc.2	-	9	1372	c.976G>A	c.(976-978)GAA>AAA	p.E326K	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	326	TTL.				cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		CAGACACTTTCGCTTCCTGGA	0.423													29	98					0	0	1	0	0	
SSX2IP	117178	broad.mit.edu	37	1	85124050	85124050	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:85124050T>G	uc001dkh.2	-	10	1304	c.1029A>C	c.(1027-1029)AGA>AGC	p.R343S	SSX2IP_uc001dkf.2_Missense_Mutation_p.R316S|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Missense_Mutation_p.R316S|SSX2IP_uc001dki.2_Missense_Mutation_p.R343S|SSX2IP_uc010osa.1_Missense_Mutation_p.R316S|SSX2IP_uc001dkj.2_Missense_Mutation_p.R343S|SSX2IP_uc009wci.2_Intron|SSX2IP_uc001dkk.1_Missense_Mutation_p.R339S	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	343					cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		TCCACTGTTTTCTGATGCTGT	0.413													19	57					0	0	1	0	0	
LPAR3	23566	broad.mit.edu	37	1	85279676	85279676	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:85279676C>A	uc001dkl.2	-	2	954	c.915G>T	c.(913-915)AAG>AAT	p.K305N	LPAR3_uc009wcj.1_Missense_Mutation_p.K305N	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	305	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						AGATCATCTTCTTCATGGTGC	0.552													25	69					3.6726e-16	4.20841e-16	1	1	0	
MCOLN2	255231	broad.mit.edu	37	1	85403733	85403733	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:85403733A>C	uc001dkm.2	-	10	1384	c.1143T>G	c.(1141-1143)TTT>TTG	p.F381L	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	381	Helical; (Potential).					integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		AGGTTCCAAGAAAAATGCTGC	0.408													17	59					0	0	1	0	0	
MCOLN2	255231	broad.mit.edu	37	1	85424296	85424296	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:85424296A>C	uc001dkm.2	-	3	568	c.327T>G	c.(325-327)TAT>TAG	p.Y109*	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	109						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		CTGTACCAGAATATCCTTTCA	0.358													23	68					0	0	1	0	0	
MCOLN3	55283	broad.mit.edu	37	1	85499799	85499799	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:85499799C>T	uc001dkp.2	-	4	625	c.532G>A	c.(532-534)GAT>AAT	p.D178N	MCOLN3_uc001dkq.2_Missense_Mutation_p.D122N|MCOLN3_uc001dkr.2_Missense_Mutation_p.D178N|MCOLN3_uc001dks.3_Missense_Mutation_p.D23N	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	178						integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		ATTTCTGGATCGATGTCAAAG	0.348													36	64					0	0	1	0	0	
MCOLN3	55283	broad.mit.edu	37	1	85511015	85511015	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:85511015C>T	uc001dkp.2	-	2	122	c.29G>A	c.(28-30)AGC>AAC	p.S10N	MCOLN3_uc001dkq.2_Missense_Mutation_p.S10N|MCOLN3_uc001dkr.2_Missense_Mutation_p.S10N|MCOLN3_uc001dks.3_5'UTR	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	10						integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		AGAGCTGCAGCTACTCACAAC	0.403													16	34					0	0	1	0	0	
WDR63	126820	broad.mit.edu	37	1	85583527	85583527	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:85583527C>A	uc001dkt.2	+	17	2093	c.1902C>A	c.(1900-1902)TTC>TTA	p.F634L	WDR63_uc009wcl.2_Missense_Mutation_p.F595L	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	634										upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		GCACAAAGTTCTTTGTGGGAA	0.338													43	95					8.00217e-19	9.36884e-19	1	1	0	
BCL10	8915	broad.mit.edu	37	1	85736475	85736475	+	Nonsense_Mutation	SNP	G	A	A	rs121918314		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:85736475G>A	uc001dkz.2	-	3	877	c.172C>T	c.(172-174)CGA>TGA	p.R58*		NM_003921	NP_003912	O95999	BCL10_HUMAN	B-cell CLL/lymphoma 10	58	CARD.		R -> G (in germ cell tumor).|R -> Q (in mesothelioma).		apoptosis|cellular response to mechanical stimulus|innate immune response|interleukin-6 biosynthetic process|lymphotoxin A biosynthetic process|negative regulation of mature B cell apoptosis|neural tube closure|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-8 biosynthetic process|positive regulation of mast cell cytokine production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of transcription, DNA-dependent|protein homooligomerization|response to molecule of bacterial origin|T cell receptor signaling pathway	CBM complex|cytosol|lysosome|membrane raft|nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protease binding|protein C-terminus binding|protein kinase B binding|protein self-association|transcription coactivator activity|ubiquitin binding|ubiquitin protein ligase binding			lung(2)	2				all cancers(265;0.0114)|Epithelial(280;0.0311)		CTTGATGTTCGACAAGAAATT	0.378			T	IGH@	MALT 								44	59					0	0	1	0	0	
DDAH1	23576	broad.mit.edu	37	1	85817243	85817243	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:85817243G>A	uc001dlb.2	-	3	584	c.423C>T	c.(421-423)GGC>GGT	p.G141G	DDAH1_uc001dlc.2_Silent_p.G38G|uc001dla.1_Intron|DDAH1_uc010osb.1_Silent_p.G41G|DDAH1_uc009wco.2_Silent_p.G38G	NM_012137	NP_036269	O94760	DDAH1_HUMAN	dimethylarginine dimethylaminohydrolase 1	141					arginine catabolic process|citrulline metabolic process|nitric oxide mediated signal transduction		dimethylargininase activity|metal ion binding				0				all cancers(265;0.0318)|Epithelial(280;0.0657)	L-Citrulline(DB00155)	TTTTGGAAAGGCCCACAAAAA	0.378													33	55					0	0	1	0	0	
CYR61	3491	broad.mit.edu	37	1	86047711	86047711	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:86047711C>T	uc001dle.2	+	3	602	c.378C>T	c.(376-378)GGC>GGT	p.G126G	CYR61_uc001dlg.2_5'UTR|CYR61_uc009wcp.1_5'Flank	NM_001554	NP_001545	O00622	CYR61_HUMAN	cysteine-rich, angiogenic inducer, 61 precursor	126	VWFC.				cell proliferation|chemotaxis|positive regulation of BMP signaling pathway|positive regulation of cell migration|positive regulation of osteoblast differentiation|positive regulation of osteoblast proliferation|positive regulation of protein kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell growth|regulation of ERK1 and ERK2 cascade|wound healing, spreading of cells	extracellular region	heparin binding|insulin-like growth factor binding			central_nervous_system(1)	1				all cancers(265;0.0216)|Epithelial(280;0.0441)		GTATTGATGGCGCCGTGGGCT	0.537											OREG0013583	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	107					0	0	1	0	0	
CLCA1	1179	broad.mit.edu	37	1	86947924	86947924	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:86947924G>T	uc001dlt.2	+	5	723	c.594G>T	c.(592-594)AAG>AAT	p.K198N	CLCA1_uc001dls.1_Missense_Mutation_p.K137N	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	198					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		ATGTAGTAAAGAAGTGTCAGG	0.403													14	37					4.93089e-13	5.49801e-13	1	1	0	
CLCA1	1179	broad.mit.edu	37	1	86952219	86952219	+	Missense_Mutation	SNP	G	A	A	rs146483639		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:86952219G>A	uc001dlt.2	+	7	1094	c.965G>A	c.(964-966)CGC>CAC	p.R322H	CLCA1_uc001dls.1_Missense_Mutation_p.R261H	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	322	VWFA.				calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		ACTGGTAACCGCCTCAATCGA	0.473													24	50					0	0	1	0	0	
CLCA1	1179	broad.mit.edu	37	1	86952423	86952423	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:86952423G>A	uc001dlt.2	+	7	1298	c.1169G>A	c.(1168-1170)CGA>CAA	p.R390Q	CLCA1_uc001dls.1_Missense_Mutation_p.R329Q	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	390	VWFA.				calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		AGCGGGCTTCGATCGGCATTT	0.438													28	71					0	0	1	0	0	
CLCA1	1179	broad.mit.edu	37	1	86956953	86956953	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:86956953T>G	uc001dlt.2	+	9	1492	c.1363T>G	c.(1363-1365)TTA>GTA	p.L455V	CLCA1_uc001dls.1_Missense_Mutation_p.L394V	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	455	VWFA.				calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		TTTAGGAGGTTTACAGACATA	0.378													21	46					0	0	1	0	0	
CLCA1	1179	broad.mit.edu	37	1	86965337	86965337	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:86965337C>A	uc001dlt.2	+	14	2483	c.2354C>A	c.(2353-2355)GCT>GAT	p.A785D		NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	785					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		TTCTTTTTAGCTCACAAGTAT	0.289													21	36					1.00905e-13	1.13002e-13	1	1	0	
CLCA3P	9629	broad.mit.edu	37	1	87100011	87100011	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:87100011C>T	uc010osh.1	+	1		c.53C>T				NR_024604				Synthetic construct DNA, clone: pF1KB7225, Homo sapiens CLCA3 gene for chloride channel, calcium activated, family member 3, without stop codon, in Flexi system.												0						CTCTTCCTATCCTTGCTTCTC	0.368													24	80					0	0	1	0	0	
HS2ST1	9653	broad.mit.edu	37	1	87563550	87563550	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:87563550C>T	uc010osk.1	+	5	1003	c.618C>T	c.(616-618)GGC>GGT	p.G206G	HS2ST1_uc001dmc.3_Silent_p.G206G|LOC339524_uc001dme.1_Silent_p.G167G	NM_012262	NP_036394	Q7LGA3	HS2ST_HUMAN	heparan sulfate 2-O-sulfotransferase 1 isoform	206	Lumenal (Potential).					Golgi membrane|integral to membrane				central_nervous_system(1)	1		Lung NSC(277;0.153)		all cancers(265;0.00699)|Epithelial(280;0.0261)		CAGAAGGTGGCTCAGACTGTG	0.453													23	61					0	0	1	0	0	
PKN2	5586	broad.mit.edu	37	1	89236102	89236102	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:89236102G>A	uc001dmn.2	+	4	914	c.572G>A	c.(571-573)CGA>CAA	p.R191Q	PKN2_uc001dmm.1_Missense_Mutation_p.R191Q|PKN2_uc010osp.1_Missense_Mutation_p.R191Q|PKN2_uc010osq.1_Missense_Mutation_p.R34Q|PKN2_uc009wcv.2_Missense_Mutation_p.R191Q	NM_006256	NP_006247	Q16513	PKN2_HUMAN	protein kinase N2	191	REM 2.				signal transduction	cytoplasm	ATP binding|histone deacetylase binding|protein kinase C activity			large_intestine(1)|lung(1)|skin(1)	3		Lung NSC(277;0.123)		all cancers(265;0.0136)|Epithelial(280;0.0301)		GAAGTCATACGAATGCAGATT	0.363													36	50					0	0	1	0	0	
PKN2	5586	broad.mit.edu	37	1	89250336	89250336	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:89250336C>T	uc001dmn.2	+	7	1342	c.1000C>T	c.(1000-1002)CGT>TGT	p.R334C	PKN2_uc001dmm.1_Missense_Mutation_p.R334C|PKN2_uc010osp.1_Missense_Mutation_p.R334C|PKN2_uc010osq.1_Missense_Mutation_p.R177C|PKN2_uc009wcv.2_Missense_Mutation_p.R334C|PKN2_uc010osr.1_5'UTR	NM_006256	NP_006247	Q16513	PKN2_HUMAN	protein kinase N2	334	C2.				signal transduction	cytoplasm	ATP binding|histone deacetylase binding|protein kinase C activity			large_intestine(1)|lung(1)|skin(1)	3		Lung NSC(277;0.123)		all cancers(265;0.0136)|Epithelial(280;0.0301)		TTTGGAAGTTCGTCTTATGGG	0.398													27	42					0	0	1	0	0	
PKN2	5586	broad.mit.edu	37	1	89294214	89294214	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:89294214C>A	uc001dmn.2	+	19	2812	c.2470C>A	c.(2470-2472)CTT>ATT	p.L824I	PKN2_uc010osp.1_Missense_Mutation_p.L808I|PKN2_uc010osq.1_Missense_Mutation_p.L667I|PKN2_uc009wcv.2_Missense_Mutation_p.L776I|PKN2_uc010osr.1_Missense_Mutation_p.L489I	NM_006256	NP_006247	Q16513	PKN2_HUMAN	protein kinase N2	824	Protein kinase.				signal transduction	cytoplasm	ATP binding|histone deacetylase binding|protein kinase C activity			large_intestine(1)|lung(1)|skin(1)	3		Lung NSC(277;0.123)		all cancers(265;0.0136)|Epithelial(280;0.0301)		TCCTGAATTTCTTGCCCCAGA	0.393													23	46					3.08376e-08	3.26638e-08	1	1	0	
GBP5	115362	broad.mit.edu	37	1	89733110	89733110	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:89733110C>T	uc001dnc.2	-	5	955	c.418G>A	c.(418-420)GAC>AAC	p.D140N	GBP5_uc001dnd.2_Missense_Mutation_p.D140N|GBP5_uc001dne.1_Missense_Mutation_p.D140N	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	140						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		TGCAGTAGGTCGATAGCACCC	0.448													19	40					0	0	1	0	0	
LRRC8C	84230	broad.mit.edu	37	1	90179562	90179562	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:90179562C>A	uc001dnl.3	+	3	1675	c.1433C>A	c.(1432-1434)TCT>TAT	p.S478Y		NM_032270	NP_115646	Q8TDW0	LRC8C_HUMAN	leucine rich repeat containing 8 family, member	478	LRR 4.					endoplasmic reticulum membrane|integral to membrane				ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8		all_lung(203;0.126)		all cancers(265;0.00756)|Epithelial(280;0.0313)		CACCAGTGTTCTGTCAAAATC	0.458													38	70					2.05212e-20	2.42303e-20	1	1	0	
ZNF326	284695	broad.mit.edu	37	1	90478702	90478702	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:90478702A>C	uc001dnq.2	+	7	971	c.832A>C	c.(832-834)AAT>CAT	p.N278H	ZNF326_uc009wda.1_Missense_Mutation_p.N189H|ZNF326_uc001dnr.2_Missense_Mutation_p.N72H	NM_182976	NP_892021	Q5BKZ1	ZN326_HUMAN	zinc finger protein 326 isoform 1	278					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	DNA binding			ovary(1)	1		all_lung(203;0.0116)|Lung NSC(277;0.0417)		all cancers(265;0.00728)|Epithelial(280;0.0265)		TGATCCTAAAAATGAAGAGGA	0.368													21	24					0	0	1	0	0	
BARHL2	343472	broad.mit.edu	37	1	91178030	91178030	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:91178030C>T	uc001dns.2	-	3	1045	c.1003G>A	c.(1003-1005)GCT>ACT	p.A335T		NM_020063	NP_064447	Q9NY43	BARH2_HUMAN	BarH-like homeobox 2	335						nucleus	sequence-specific DNA binding			ovary(1)	1		all_lung(203;0.0263)|Lung SC(238;0.128)		all cancers(265;0.000897)|Epithelial(280;0.00516)|OV - Ovarian serous cystadenocarcinoma(397;0.211)		TACATGGCAGCGGCAGCCGCC	0.647													7	17					0	0	1	0	0	
ZNF644	84146	broad.mit.edu	37	1	91404174	91404174	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:91404174T>G	uc001dnw.2	-	3	2879	c.2737A>C	c.(2737-2739)AAC>CAC	p.N913H	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Missense_Mutation_p.N913H	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	913					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		AAGCCATCGTTTTGGTCATAA	0.343													23	68					0	0	1	0	0	
ZNF644	84146	broad.mit.edu	37	1	91404625	91404625	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:91404625T>G	uc001dnw.2	-	3	2428	c.2286A>C	c.(2284-2286)AAA>AAC	p.K762N	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Missense_Mutation_p.K762N	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	762					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		CTTCTTCTTTTTTGAAATGCA	0.328													43	91					0	0	1	0	0	
ZNF644	84146	broad.mit.edu	37	1	91405928	91405928	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:91405928T>A	uc001dnw.2	-	3	1125	c.983A>T	c.(982-984)CAA>CTA	p.Q328L	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Missense_Mutation_p.Q328L	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	328					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		CTCTTCATTTTGTTCTAGAAA	0.358													31	76					0	0	1	0	0	
CDC7	8317	broad.mit.edu	37	1	91985809	91985809	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:91985809G>T	uc001doe.2	+	11	1468	c.1303G>T	c.(1303-1305)GAA>TAA	p.E435*	CDC7_uc001dof.2_Nonsense_Mutation_p.E435*|CDC7_uc010osw.1_Nonsense_Mutation_p.E407*|CDC7_uc009wdc.2_Nonsense_Mutation_p.E435*|CDC7_uc009wdd.2_Intron	NM_003503	NP_003494	O00311	CDC7_HUMAN	cell division cycle 7	435	Protein kinase.				cell cycle checkpoint|cell division|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	5		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		GGGATCCAGAGAAACTATCCA	0.318													15	37					1.67942e-08	1.78672e-08	1	1	0	
BRDT	676	broad.mit.edu	37	1	92442839	92442839	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:92442839G>T	uc001dok.3	+	6	1207	c.858G>T	c.(856-858)AAG>AAT	p.K286N	BRDT_uc001dol.3_Missense_Mutation_p.K286N|BRDT_uc010osz.1_Missense_Mutation_p.K290N|BRDT_uc009wdf.2_Missense_Mutation_p.K213N|BRDT_uc010ota.1_Missense_Mutation_p.K240N|BRDT_uc010otb.1_Missense_Mutation_p.K240N|BRDT_uc001dom.3_Missense_Mutation_p.K286N	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	286					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TGCTTGCAAAGAAACATTTTT	0.353													38	78					3.62531e-18	4.23176e-18	1	1	0	
BRDT	676	broad.mit.edu	37	1	92469985	92469985	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:92469985G>A	uc001dok.3	+	17	2752	c.2403G>A	c.(2401-2403)AAG>AAA	p.K801K	BRDT_uc001dol.3_Silent_p.K801K|BRDT_uc010osz.1_Silent_p.K805K|BRDT_uc009wdf.2_Silent_p.K728K|BRDT_uc010ota.1_Silent_p.K755K|BRDT_uc010otb.1_Silent_p.K755K|BRDT_uc001dom.3_Silent_p.K801K	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	801					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TAAAGATTAAGAATGCAGATT	0.333													35	74					0	0	1	0	0	
EPHX4	253152	broad.mit.edu	37	1	92515886	92515886	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:92515886G>A	uc001don.2	+	5	721	c.617G>A	c.(616-618)CGA>CAA	p.R206Q		NM_173567	NP_775838	Q8IUS5	EPHX4_HUMAN	abhydrolase domain containing 7	206						integral to membrane	hydrolase activity			central_nervous_system(1)	1						TATATTTTACGACACCCTGCT	0.318													25	63					0	0	1	0	0	
GLMN	11146	broad.mit.edu	37	1	92735291	92735291	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:92735291G>T	uc001dor.2	-	9	1081	c.966C>A	c.(964-966)GTC>GTA	p.V322V	GLMN_uc009wdg.2_RNA|GLMN_uc001dos.2_Silent_p.V322V	NM_053274	NP_444504	Q92990	GLMN_HUMAN	glomulin	322					muscle cell differentiation|negative regulation of T cell proliferation|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of phosphorylation|regulation of gene expression, epigenetic|vasculogenesis	intracellular	hepatocyte growth factor receptor binding			skin(1)	1		all_lung(203;0.00827)|Lung NSC(277;0.0295)		all cancers(265;0.00702)|GBM - Glioblastoma multiforme(16;0.0381)|Epithelial(280;0.0989)		TTTGCAAAAAGACTTCAATGT	0.204									Multiple_Glomus_Tumors_(of_the_Skin)_Familial				19	48					2.39187e-15	2.72483e-15	1	1	0	
RPAP2	79871	broad.mit.edu	37	1	92846313	92846313	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:92846313C>A	uc001dot.2	+	12	1830	c.1721C>A	c.(1720-1722)TCT>TAT	p.S574Y	RPAP2_uc009wdh.2_RNA	NM_024813	NP_079089	Q8IXW5	RPAP2_HUMAN	RNA polymerase II associated protein 2	574						integral to membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)	1		all_lung(203;0.0565)|Lung NSC(277;0.152)|Glioma(108;0.222)		all cancers(265;0.00647)|GBM - Glioblastoma multiforme(16;0.0234)|Epithelial(280;0.115)		CAGAAACATTCTCAGGAAGGT	0.373													52	94					1.46357e-32	1.79619e-32	1	1	0	
EVI5	7813	broad.mit.edu	37	1	93073271	93073271	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:93073271C>A	uc001dox.2	-	15	1803	c.1793G>T	c.(1792-1794)AGT>ATT	p.S598I	EVI5_uc010otf.1_Missense_Mutation_p.S609I|EVI5_uc001doy.1_RNA	NM_005665	NP_005656	O60447	EVI5_HUMAN	ecotropic viral integration site 5	598	Targeting to the centrosomes.|Potential.|Dimerization.|Interaction with AURKB and INCENP.				cell cycle|cell division|cell proliferation|multicellular organismal development	microtubule organizing center|nucleus|spindle	protein binding|Rab GTPase activator activity			ovary(1)|breast(1)	2		all_lung(203;0.00146)|Lung NSC(277;0.00565)|all_neural(321;0.185)|Melanoma(281;0.193)|Glioma(108;0.203)		Epithelial(280;8.09e-25)|OV - Ovarian serous cystadenocarcinoma(397;1.27e-22)|all cancers(265;1.74e-21)|GBM - Glioblastoma multiforme(16;0.00233)|BRCA - Breast invasive adenocarcinoma(282;0.211)		AAGATGGTTACTATTGATCTG	0.323													6	24					3.59834e-05	3.69903e-05	1	1	0	
CCDC18	343099	broad.mit.edu	37	1	93672695	93672695	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:93672695G>T	uc001dpq.2	+	9	1471	c.1303G>T	c.(1303-1305)GAA>TAA	p.E435*	CCDC18_uc009wdl.1_5'UTR	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	317	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		CAACGGAAAAGAAAAATTAAG	0.269													13	30					5.50884e-06	5.70595e-06	1	1	0	
CCDC18	343099	broad.mit.edu	37	1	93712497	93712497	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:93712497G>T	uc001dpq.2	+	23	3706	c.3538G>T	c.(3538-3540)GAA>TAA	p.E1180*	CCDC18_uc009wdl.1_Nonsense_Mutation_p.E697*	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	1061	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		GGAACTTAAAGAATGTAACAA	0.264													20	42					4.96729e-08	5.24652e-08	1	1	0	
BCAR3	8412	broad.mit.edu	37	1	94107889	94107889	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:94107889G>T	uc001dpz.2	-	3	603	c.328C>A	c.(328-330)CTT>ATT	p.L110I	BCAR3_uc001dqa.2_Missense_Mutation_p.L110I|BCAR3_uc001dqb.2_Missense_Mutation_p.L110I	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	110					response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		GGGTCCAGAAGATGTGGATCC	0.393													30	74					9.78306e-22	1.16216e-21	1	1	0	
ABCA4	24	broad.mit.edu	37	1	94463453	94463453	+	Silent	SNP	G	A	A	rs1801626		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:94463453G>A	uc001dqh.2	-	48	6797	c.6693C>T	c.(6691-6693)ATC>ATT	p.I2231I		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	2231	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		AGTACTCCTCGATGAGCAGGC	0.592													14	34					0	0	1	0	0	
ABCA4	24	broad.mit.edu	37	1	94526167	94526167	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:94526167T>C	uc001dqh.2	-	14	2190	c.2086A>G	c.(2086-2088)ATT>GTT	p.I696V	ABCA4_uc010otn.1_Missense_Mutation_p.I696V	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	696					phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GTACACCAAATCACTGCATTG	0.478													31	60					0	0	1	0	0	
ABCA4	24	broad.mit.edu	37	1	94528764	94528764	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:94528764T>C	uc001dqh.2	-	12	1768	c.1664A>G	c.(1663-1665)GAC>GGC	p.D555G	ABCA4_uc010otn.1_Missense_Mutation_p.D555G	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	555	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GGGATACATGTCAGGGAATAC	0.473													61	119					0	0	1	0	0	
ARHGAP29	9411	broad.mit.edu	37	1	94640272	94640272	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:94640272T>C	uc001dqj.3	-	23	3308	c.2939A>G	c.(2938-2940)GAA>GGA	p.E980G	ARHGAP29_uc009wdq.1_RNA	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	980					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GGATGCTGATTCAGCCTCTTG	0.393													39	110					0	0	1	0	0	
ARHGAP29	9411	broad.mit.edu	37	1	94650597	94650597	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:94650597C>T	uc001dqj.3	-	18	2309	c.1940G>A	c.(1939-1941)CGA>CAA	p.R647Q	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Missense_Mutation_p.R213Q	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	647	Phorbol-ester/DAG-type.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		CAAACACTTTCGATGACAAAC	0.353													21	22					0	0	1	0	0	
ARHGAP29	9411	broad.mit.edu	37	1	94651015	94651015	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:94651015A>G	uc001dqj.3	-	17	2172	c.1803T>C	c.(1801-1803)TTT>TTC	p.F601F	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.F167F	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	601					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		ATGTTTTCTTAAATGTTCCAA	0.343													31	41					0	0	1	0	0	
DPYD	1806	broad.mit.edu	37	1	97548022	97548022	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:97548022A>G	uc001drv.2	-	22	2908	c.2771T>C	c.(2770-2772)GTA>GCA	p.V924A		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	924					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTTTCCTATTACATCCTAAAA	0.333													41	105					0	0	1	0	0	
DPYD	1806	broad.mit.edu	37	1	97770839	97770839	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:97770839G>A	uc001drv.2	-	18	2412	c.2275C>T	c.(2275-2277)CGA>TGA	p.R759*		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	759					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TATGTAGTTCGCTTTGCAATC	0.483													34	82					0	0	1	0	0	
DPYD	1806	broad.mit.edu	37	1	97839170	97839170	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:97839170A>C	uc001drv.2	-	16	2142	c.2005T>G	c.(2005-2007)TTA>GTA	p.L669V		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	669	Uracil binding (Potential).				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GGACATGATAAATTTAACTCC	0.433													20	58					0	0	1	0	0	
LPPR4	9890	broad.mit.edu	37	1	99772241	99772241	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:99772241G>A	uc001dse.2	+	7	2073	c.1967G>A	c.(1966-1968)AGC>AAC	p.S656N	LPPR4_uc010oue.1_Missense_Mutation_p.S598N	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	656							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		GAAAAGGGCAGCCTTCGCCAA	0.527													11	41					0	0	1	0	0	
AGL	178	broad.mit.edu	37	1	100380956	100380956	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:100380956C>T	uc001dsi.1	+	31	4573	c.4173C>T	c.(4171-4173)CTC>CTT	p.L1391L	AGL_uc001dsj.1_Silent_p.L1391L|AGL_uc001dsk.1_Silent_p.L1391L|AGL_uc001dsl.1_Silent_p.L1391L|AGL_uc001dsm.1_Silent_p.L1375L|AGL_uc001dsn.1_Silent_p.L1374L	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1391	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		CCCCTGAGCTCTTTACTACAG	0.353													41	71					0	0	1	0	0	
HIAT1	64645	broad.mit.edu	37	1	100533605	100533605	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:100533605G>A	uc001dst.2	+	6	559	c.559G>A	c.(559-561)GAC>AAC	p.D187N		NM_033055	NP_149044	Q96MC6	HIAT1_HUMAN	hippocampus abundant transcript 1	187	Cytoplasmic (Potential).				transmembrane transport	integral to membrane|plasma membrane	transporter activity				0		all_epithelial(167;2.96e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0832)|all cancers(265;0.136)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.195)		AGTATATGGGGACAGCTTGGT	0.443													35	72					0	0	1	0	0	
SASS6	163786	broad.mit.edu	37	1	100587965	100587965	+	Silent	SNP	A	G	G	rs113803226		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:100587965A>G	uc001dsu.2	-	4	423	c.282T>C	c.(280-282)TGT>TGC	p.C94C	SASS6_uc009wdz.2_5'UTR	NM_194292	NP_919268	Q6UVJ0	SAS6_HUMAN	spindle assembly abnormal protein 6	94					centriole replication	centriole				upper_aerodigestive_tract(1)|ovary(1)	2		all_epithelial(167;4.58e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.085)|all cancers(265;0.139)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.197)		GTTCTTGAGTACATTGCTGAA	0.328													20	41					0	0	1	0	0	
VCAM1	7412	broad.mit.edu	37	1	101198116	101198116	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:101198116G>A	uc001dti.2	+	7	1788	c.1668G>A	c.(1666-1668)CAG>CAA	p.Q556Q	VCAM1_uc001dtj.2_Silent_p.Q464Q|VCAM1_uc010ouj.1_Silent_p.Q494Q	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	556	Ig-like C2-type 6.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	GGGAGCTACAGCCTCTTTCTG	0.468													36	40					0	0	1	0	0	
VCAM1	7412	broad.mit.edu	37	1	101203687	101203687	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:101203687A>C	uc001dti.2	+	9	2188	c.2068A>C	c.(2068-2070)AAC>CAC	p.N690H	VCAM1_uc001dtj.2_Missense_Mutation_p.N598H|VCAM1_uc010ouj.1_Missense_Mutation_p.N628H	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	690	Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	AGGAAGAGAAAACAACAAAGA	0.313													92	126					0	0	1	0	0	
SLC30A7	148867	broad.mit.edu	37	1	101361884	101361884	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:101361884C>T	uc001dtn.2	+	1	253	c.66C>T	c.(64-66)ATC>ATT	p.I22I	EXTL2_uc001dtk.1_5'Flank|EXTL2_uc001dtl.1_5'Flank|EXTL2_uc010ouk.1_5'Flank|EXTL2_uc001dtm.1_5'Flank|SLC30A7_uc001dto.2_Silent_p.I22I	NM_001144884	NP_001138356	Q8NEW0	ZNT7_HUMAN	zinc transporter like 2	22	Cytoplasmic (Potential).				zinc ion transport	Golgi apparatus|integral to membrane	cation transmembrane transporter activity|protein binding				0		all_epithelial(167;0.000445)|all_lung(203;0.00645)|Lung NSC(277;0.0119)		Epithelial(280;0.0437)|all cancers(265;0.0498)|COAD - Colon adenocarcinoma(174;0.162)|Colorectal(144;0.19)|Lung(183;0.201)		TCGGCAAGATCTCGGGCTGGT	0.597													20	34					0	0	1	0	0	
SLC30A7	148867	broad.mit.edu	37	1	101362221	101362221	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:101362221G>A	uc001dtn.2	+	2	363	c.176G>A	c.(175-177)AGC>AAC	p.S59N	EXTL2_uc001dtk.1_5'Flank|EXTL2_uc001dtl.1_5'Flank|EXTL2_uc010ouk.1_5'Flank|EXTL2_uc001dtm.1_5'Flank|SLC30A7_uc001dto.2_Missense_Mutation_p.S59N	NM_001144884	NP_001138356	Q8NEW0	ZNT7_HUMAN	zinc transporter like 2	59	Extracellular (Potential).				zinc ion transport	Golgi apparatus|integral to membrane	cation transmembrane transporter activity|protein binding				0		all_epithelial(167;0.000445)|all_lung(203;0.00645)|Lung NSC(277;0.0119)		Epithelial(280;0.0437)|all cancers(265;0.0498)|COAD - Colon adenocarcinoma(174;0.162)|Colorectal(144;0.19)|Lung(183;0.201)		GGCATCTGGAGCAACTGGTAA	0.512													13	20					0	0	1	0	0	
COL11A1	1301	broad.mit.edu	37	1	103345388	103345388	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:103345388T>G	uc001dul.2	-	66	5443	c.5125A>C	c.(5125-5127)AAT>CAT	p.N1709H	COL11A1_uc001duk.2_Missense_Mutation_p.N905H|COL11A1_uc001dum.2_Missense_Mutation_p.N1721H|COL11A1_uc001dun.2_Missense_Mutation_p.N1670H|COL11A1_uc009weh.2_Missense_Mutation_p.N1593H	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1709	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TAGGTGAAATTTTGCCGAGCA	0.418													26	64					0	0	1	0	0	
COL11A1	1301	broad.mit.edu	37	1	103355106	103355106	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:103355106A>C	uc001dul.2	-	59	4687	c.4369T>G	c.(4369-4371)TTA>GTA	p.L1457V	COL11A1_uc001duk.2_Missense_Mutation_p.L653V|COL11A1_uc001dum.2_Missense_Mutation_p.L1469V|COL11A1_uc001dun.2_Missense_Mutation_p.L1418V|COL11A1_uc009weh.2_Missense_Mutation_p.L1341V	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1457	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		AGGCCAATTAAACCAGGATGT	0.398													30	62					0	0	1	0	0	
COL11A1	1301	broad.mit.edu	37	1	103412431	103412431	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:103412431C>T	uc001dul.2	-	42	3568	c.3250G>A	c.(3250-3252)GGT>AGT	p.G1084S	COL11A1_uc001duk.2_Missense_Mutation_p.G280S|COL11A1_uc001dum.2_Missense_Mutation_p.G1096S|COL11A1_uc001dun.2_Missense_Mutation_p.G1045S|COL11A1_uc009weh.2_Missense_Mutation_p.G968S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1084	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CCAGCTGGACCAGGAGGACCC	0.468													6	36					0	0	1	0	0	
NTNG1	22854	broad.mit.edu	37	1	107867344	107867344	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:107867344C>T	uc001dvh.3	+	3	1405	c.687C>T	c.(685-687)TTC>TTT	p.F229F	NTNG1_uc001dvf.3_Silent_p.F229F|NTNG1_uc010out.1_Silent_p.F229F|NTNG1_uc001dvc.3_Silent_p.F229F|NTNG1_uc001dvd.1_Silent_p.F229F	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	229	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		AAGACAGGTTCGCGTTTTTTG	0.418													21	48					0	0	1	0	0	
VAV3	10451	broad.mit.edu	37	1	108298072	108298072	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:108298072A>C	uc001dvk.1	-	12	1204	c.1150T>G	c.(1150-1152)TTT>GTT	p.F384V	VAV3_uc010ouw.1_Missense_Mutation_p.F384V|VAV3_uc001dvl.1_Missense_Mutation_p.F208V|VAV3_uc010oux.1_Missense_Mutation_p.F384V	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	384					angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		GATAGCTGAAACTGTTTAATT	0.378													7	16					0	0	1	0	0	
SLC25A24	29957	broad.mit.edu	37	1	108728461	108728461	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:108728461T>G	uc001dvn.3	-	2	513	c.299A>C	c.(298-300)AAA>ACA	p.K100T	SLC25A24_uc001dvm.2_Missense_Mutation_p.K81T	NM_013386	NP_037518	Q6NUK1	SCMC1_HUMAN	solute carrier family 25 member 24 isoform 1	100	EF-hand 3.|3 (Potential).|Mitochondrial intermembrane (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)	1		all_epithelial(167;3.72e-05)|all_lung(203;0.000567)|Lung NSC(277;0.0011)|Melanoma(281;0.211)		Colorectal(144;0.0345)|Lung(183;0.0971)|COAD - Colon adenocarcinoma(174;0.127)|Epithelial(280;0.134)		ATCATTATTTTTGTCTAAACT	0.323													4	19					0	0	1	0	0	
C1orf59	113802	broad.mit.edu	37	1	109191357	109191357	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:109191357T>G	uc001dvt.3	-	8	1251	c.1013A>C	c.(1012-1014)AAA>ACA	p.K338T	C1orf59_uc001dvu.3_Missense_Mutation_p.K338T|C1orf59_uc009wer.2_3'UTR	NM_001102592	NP_001096062	Q5T8I9	HENMT_HUMAN	hypothetical protein LOC113802	338					gene silencing by RNA|piRNA metabolic process	P granule	metal ion binding|O-methyltransferase activity|RNA binding|RNA methyltransferase activity				0		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0152)|Lung(183;0.0895)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.163)		TACGAAAAATTTATCTCCAAC	0.478													31	49					0	0	1	0	0	
FNDC7	163479	broad.mit.edu	37	1	109270512	109270512	+	Silent	SNP	C	T	T	rs142260451	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:109270512C>T	uc001dvx.2	+	7	1194	c.1194C>T	c.(1192-1194)GCC>GCT	p.A398A	FNDC7_uc010ova.1_Silent_p.A165A	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	399	Fibronectin type-III 5.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		TCCGTGGTGCCGAACTGTATG	0.517													38	85					0	0	1	0	0	
AKNAD1	254268	broad.mit.edu	37	1	109373197	109373197	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:109373197G>A	uc001dwa.2	-	10	2091	c.1822C>T	c.(1822-1824)CGC>TGC	p.R608C	AKNAD1_uc010ovb.1_Missense_Mutation_p.R315C|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	608										ovary(3)	3						AGGAGCCTGCGACAGAAGGCA	0.567													21	53					0	0	1	0	0	
GPSM2	29899	broad.mit.edu	37	1	109440141	109440141	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:109440141G>A	uc010ovc.1	+	4	802	c.306G>A	c.(304-306)GCG>GCA	p.A102A	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Silent_p.A102A|GPSM2_uc010ove.1_Silent_p.A102A	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	102	TPR 3.				G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		TGGGGGAAGCGAAAGCTAGTG	0.333													13	40					0	0	1	0	0	
GPSM2	29899	broad.mit.edu	37	1	109445747	109445747	+	Splice_Site	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:109445747G>T	uc010ovc.1	+	9	1450	c.954_splice	c.e9-1	p.R318_splice	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Splice_Site_p.R318_splice|GPSM2_uc010ove.1_Splice_Site_p.R318_splice	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein						G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		TAACGTTTTAGAATTGGTGAA	0.363													14	32					0.00316338	0.00320049	1	1	0	
KIAA1324	57535	broad.mit.edu	37	1	109742851	109742851	+	Missense_Mutation	SNP	G	T	T	rs141267352		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:109742851G>T	uc001dwq.2	+	21	2935	c.2799G>T	c.(2797-2799)AAG>AAT	p.K933N	KIAA1324_uc009wex.1_Missense_Mutation_p.K883N|KIAA1324_uc009wey.2_Missense_Mutation_p.K846N|KIAA1324_uc010ovg.1_Missense_Mutation_p.K831N|KIAA1324_uc001dwr.2_Missense_Mutation_p.K583N|KIAA1324_uc001dws.1_RNA|KIAA1324_uc009wez.1_RNA	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	933	Cytoplasmic (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane		p.K933K(1)		ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		TTTGGAAAAAGAATCAAAAGT	0.438													36	96					3.6622e-26	4.42619e-26	1	1	0	
CELSR2	1952	broad.mit.edu	37	1	109806711	109806711	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:109806711C>T	uc001dxa.3	+	10	5074	c.5013C>T	c.(5011-5013)GGC>GGT	p.G1671G		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	1671	Extracellular (Potential).|Laminin G-like 2.				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TACGAGAGGGCCACGTGATGC	0.597											OREG0013632	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	37					0	0	1	0	0	
CELSR2	1952	broad.mit.edu	37	1	109808788	109808788	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:109808788C>T	uc001dxa.3	+	15	6034	c.5973C>T	c.(5971-5973)TTC>TTT	p.F1991F		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	1991	Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		GTACCCGCTTCGGGCTGCCTG	0.607													26	49					0	0	1	0	0	
PSMA5	5686	broad.mit.edu	37	1	109957887	109957887	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:109957887C>T	uc001dxn.2	-	3	280	c.195G>A	c.(193-195)GAG>GAA	p.E65E	PSMA5_uc010ovj.1_Silent_p.E7E	NM_002790	NP_002781	P28066	PSA5_HUMAN	proteasome alpha 5 subunit	65					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	protein binding|threonine-type endopeptidase activity				0		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.045)|Colorectal(144;0.116)|Epithelial(280;0.187)|all cancers(265;0.196)|LUSC - Lung squamous cell carcinoma(189;0.235)		CTACAATTTTCTCAATGCTGC	0.468													26	70					0	0	1	0	0	
GNAI3	2773	broad.mit.edu	37	1	110116549	110116549	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:110116549G>A	uc001dxz.2	+	3	350	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_006496	NP_006487	P08754	GNAI3_HUMAN	guanine nucleotide binding protein (G protein),	65					cell cycle|cell division|inhibition of adenylate cyclase activity by G-protein signaling pathway|platelet activation|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|metabotropic serotonin receptor binding|signal transducer activity			ovary(1)	1		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.046)|Colorectal(144;0.119)|Epithelial(280;0.139)|all cancers(265;0.147)|LUSC - Lung squamous cell carcinoma(189;0.237)		TTCAGAGGATGAATGTAAACA	0.353													20	51					0	0	1	0	0	
EPS8L3	79574	broad.mit.edu	37	1	110301280	110301280	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:110301280C>T	uc001dyr.1	-	7	612	c.467G>A	c.(466-468)CGA>CAA	p.R156Q	EPS8L3_uc001dys.1_Missense_Mutation_p.R156Q|EPS8L3_uc001dyq.1_Missense_Mutation_p.R157Q|EPS8L3_uc009wfm.1_Missense_Mutation_p.R123Q|EPS8L3_uc009wfn.1_Missense_Mutation_p.R123Q|EPS8L3_uc009wfo.1_Missense_Mutation_p.R103Q	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	156						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		GCCTCCAAGTCGAGGTCTGCT	0.617													11	53					0	0	1	0	0	
RBM15	64783	broad.mit.edu	37	1	110884015	110884015	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:110884015G>A	uc001dzl.1	+	1	2071	c.1988G>A	c.(1987-1989)CGA>CAA	p.R663Q	RBM15_uc001dzm.1_Missense_Mutation_p.R663Q|uc001dzj.2_5'Flank	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	RNA binding motif protein 15	663	Arg-rich.				interspecies interaction between organisms	nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)		GACCGCCCACGAAAACGTCAC	0.567			T	MKL1	acute megakaryocytic leukemia								18	23					0	0	1	0	0	
KCNA10	3744	broad.mit.edu	37	1	111060927	111060927	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:111060927G>T	uc001dzt.1	-	1	871	c.483C>A	c.(481-483)ATC>ATA	p.I161I		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	161						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		CATCAGCAAAGATATCAATGG	0.468													20	57					1.96292e-10	2.12899e-10	1	1	0	
KCNA3	3738	broad.mit.edu	37	1	111216495	111216495	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:111216495G>A	uc001dzv.1	-	1	1161	c.937C>T	c.(937-939)CGG>TGG	p.R313W		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	313	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCGAAGAACCGCACCAGCAGT	0.547													54	66					0	0	1	0	0	
KCNA3	3738	broad.mit.edu	37	1	111217087	111217087	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:111217087G>A	uc001dzv.1	-	1	569	c.345C>T	c.(343-345)TTC>TTT	p.F115F		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	115						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCTGCGTCTCGAAGCGCAGCC	0.682													26	52					0	0	1	0	0	
KCNA3	3738	broad.mit.edu	37	1	111217183	111217183	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:111217183G>A	uc001dzv.1	-	1	473	c.249C>T	c.(247-249)TGC>TGT	p.C83C		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	83						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		CGTAGCGGTCGCAGCCGCCGC	0.746													10	10					0	0	1	0	0	
CD53	963	broad.mit.edu	37	1	111440442	111440442	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:111440442G>A	uc001dzw.2	+	8	687	c.516G>A	c.(514-516)GCG>GCA	p.A172A	CD53_uc001dzx.2_Silent_p.A172A|CD53_uc010owa.1_Silent_p.A113A|CD53_uc001dzy.2_Intron	NM_001040033	NP_001035122	P19397	CD53_HUMAN	CD53 antigen	172	Extracellular (Potential).				signal transduction	integral to membrane|plasma membrane					0		all_cancers(81;1.06e-05)|all_epithelial(167;1.95e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0264)|Colorectal(144;0.0375)|all cancers(265;0.11)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.141)|LUSC - Lung squamous cell carcinoma(189;0.144)		GTTGCTATGCGAAAGCAAGAC	0.328													29	71					0	0	1	0	0	
C1orf103	55791	broad.mit.edu	37	1	111492561	111492561	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:111492561C>T	uc001eaa.2	-	3	2037	c.1781G>A	c.(1780-1782)GGA>GAA	p.G594E	C1orf103_uc001dzz.2_Missense_Mutation_p.G58E|C1orf103_uc001eab.2_Missense_Mutation_p.G58E|C1orf103_uc001eac.1_Missense_Mutation_p.G58E	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	594					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		GAAACCTTCTCCAGAGGTCAA	0.393													50	93					0	0	1	0	0	
DRAM2	128338	broad.mit.edu	37	1	111661436	111661436	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:111661436A>G	uc001ead.3	-	8	941	c.684T>C	c.(682-684)CGT>CGC	p.R228R	DRAM2_uc001eae.3_Silent_p.R228R|DRAM2_uc009wfy.2_RNA|DRAM2_uc001eaf.3_Silent_p.R98R	NM_178454	NP_848549	Q6UX65	DRAM2_HUMAN	transmembrane protein 77	228					apoptosis|induction of apoptosis	Golgi apparatus|integral to membrane|lysosomal membrane					0						CCTGAAAATCACGAATGTAAG	0.393													12	19					0	0	1	0	0	
C1orf88	128344	broad.mit.edu	37	1	111889538	111889538	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:111889538C>T	uc001eaw.2	+	2	106	c.26C>T	c.(25-27)GCG>GTG	p.A9V	C1orf88_uc001eax.2_Missense_Mutation_p.A9V|C1orf88_uc009wge.1_Missense_Mutation_p.A9V|C1orf88_uc001eay.2_5'Flank	NM_181643	NP_857594	Q8TCI5	CA088_HUMAN	hypothetical protein LOC128344	9										ovary(1)|skin(1)	2		all_cancers(81;3.21e-05)|all_epithelial(167;1.19e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0239)|Colorectal(144;0.0301)|all cancers(265;0.0677)|Epithelial(280;0.0897)|COAD - Colon adenocarcinoma(174;0.116)|LUSC - Lung squamous cell carcinoma(189;0.135)		TTAGACGCTGCGGATAACTAC	0.532													18	41					0	0	1	0	0	
LRIG2	9860	broad.mit.edu	37	1	113638552	113638552	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:113638552G>A	uc001edf.1	+	7	1058	c.860G>A	c.(859-861)CGA>CAA	p.R287Q	LRIG2_uc009wgn.1_Missense_Mutation_p.R184Q	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	287	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TATGGCTTGCGAATGTTACAG	0.433													23	48					0	0	1	0	0	
LRIG2	9860	broad.mit.edu	37	1	113638635	113638635	+	Missense_Mutation	SNP	G	A	A	rs149797505	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:113638635G>A	uc001edf.1	+	7	1141	c.943G>A	c.(943-945)GAA>AAA	p.E315K	LRIG2_uc009wgn.1_Missense_Mutation_p.E212K	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	315	LRR 11.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		AAGACTATCCGAACTGTAAGT	0.443													21	41					0	0	1	0	0	
MAGI3	260425	broad.mit.edu	37	1	114128214	114128214	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:114128214C>T	uc001edk.2	+	4	940	c.759C>T	c.(757-759)AAC>AAT	p.N253N	MAGI3_uc001edh.3_Silent_p.N253N|MAGI3_uc001edi.3_Silent_p.N253N|MAGI3_uc010owm.1_Silent_p.N253N	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	253	Guanylate kinase-like.				apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCAGTGGAAACGCAGGTTTGT	0.358													18	43					0	0	1	0	0	
PHTF1	10745	broad.mit.edu	37	1	114246728	114246728	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:114246728G>A	uc009wgp.1	-	14	2317	c.1865C>T	c.(1864-1866)TCG>TTG	p.S622L	PHTF1_uc001edn.2_Missense_Mutation_p.S622L|PHTF1_uc001edm.2_Missense_Mutation_p.S379L	NM_006608	NP_006599	Q9UMS5	PHTF1_HUMAN	putative homeodomain transcription factor 1	622						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAAAGCAATCGAAAGTGTCAG	0.388													14	28					0	0	1	0	0	
AP4B1	10717	broad.mit.edu	37	1	114438555	114438555	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:114438555T>C	uc001eeb.2	-	9	1759	c.1616A>G	c.(1615-1617)GAC>GGC	p.D539G	uc001edv.1_Intron|AP4B1_uc001eec.2_Missense_Mutation_p.D371G|AP4B1_uc001eed.2_Missense_Mutation_p.D539G|AP4B1_uc010owp.1_Missense_Mutation_p.D440G|AP4B1_uc001eea.1_3'UTR|AP4B1_uc001eee.1_Missense_Mutation_p.D66G	NM_006594	NP_006585	Q9Y6B7	AP4B1_HUMAN	adaptor-related protein complex 4, beta 1	539					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|soluble fraction|trans-Golgi network	protein binding|protein transporter activity			ovary(3)|central_nervous_system(1)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.1e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAGAGTAGGGTCAGATTTAGG	0.493													28	49					0	0	1	0	0	
DCLRE1B	64858	broad.mit.edu	37	1	114454281	114454281	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:114454281C>T	uc001eeg.2	+	4	1238	c.1067C>T	c.(1066-1068)TCC>TTC	p.S356F	DCLRE1B_uc001eeh.2_Missense_Mutation_p.S230F|DCLRE1B_uc001eei.2_Missense_Mutation_p.S230F	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	356					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTGTTTGAATCCCCTGAGGAA	0.478								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					29	66					0	0	1	0	0	
SYT6	148281	broad.mit.edu	37	1	114682360	114682360	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:114682360G>A	uc001eev.2	-	2	384	c.134C>T	c.(133-135)GCG>GTG	p.A45V		NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	130	Cytoplasmic (Potential).				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTTCACGGCCGCCTCCAGGAA	0.612													39	85					0	0	1	0	0	
TRIM33	51592	broad.mit.edu	37	1	114964188	114964188	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:114964188C>T	uc001eew.2	-	11	2015	c.1931G>A	c.(1930-1932)AGC>AAC	p.S644N	TRIM33_uc010owr.1_Missense_Mutation_p.S234N|TRIM33_uc010ows.1_Missense_Mutation_p.S252N|TRIM33_uc001eex.2_Missense_Mutation_p.S644N	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	644					negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGTAGTAGGGCTCGTTGGGTT	0.463			T	RET	papillary thyroid								35	56					0	0	1	0	0	
TRIM33	51592	broad.mit.edu	37	1	114976274	114976274	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:114976274A>C	uc001eew.2	-	5	1089	c.1005T>G	c.(1003-1005)AAT>AAG	p.N335K	TRIM33_uc010ows.1_5'UTR|TRIM33_uc001eex.2_Missense_Mutation_p.N335K	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	335	Necessary for oligomerization.|Potential.				negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AATGAACATAATTCTTCTTCT	0.333			T	RET	papillary thyroid								32	52					0	0	1	0	0	
TRIM33	51592	broad.mit.edu	37	1	115006983	115006983	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115006983C>T	uc001eew.2	-	2	638	c.554G>A	c.(553-555)CGC>CAC	p.R185H	TRIM33_uc010ows.1_5'Flank|TRIM33_uc001eex.2_Missense_Mutation_p.R185H	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	185					negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCATTCTTGGCGGCATACTGG	0.358			T	RET	papillary thyroid								43	39					0	0	1	0	0	
DENND2C	163259	broad.mit.edu	37	1	115078697	115078697	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115078697G>A	uc001eez.2	-	29		c.4946C>T				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CACATTCCTGGAGCACATGTG	0.562													7	28					0	0	1	0	0	
DENND2C	163259	broad.mit.edu	37	1	115130017	115130017	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115130017G>A	uc001efd.1	-	20	3448	c.2746C>T	c.(2746-2748)CGG>TGG	p.R916W	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.R859W	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	916										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCAAGACTCCGCAAAATTCTA	0.323													85	149					0	0	1	0	0	
DENND2C	163259	broad.mit.edu	37	1	115168177	115168177	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115168177G>T	uc001efd.1	-	4	1131	c.429C>A	c.(427-429)TTC>TTA	p.F143L	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.F143L	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	143										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTGAGGTATAGAAGTTTCCTG	0.373													38	59					4.46736e-08	4.72581e-08	1	1	0	
DENND2C	163259	broad.mit.edu	37	1	115168398	115168398	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115168398T>G	uc001efd.1	-	4	910	c.208A>C	c.(208-210)AAC>CAC	p.N70H	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.N70H	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	70										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACATCCAAGTTTTTGCTCTTT	0.358													63	118					0	0	1	0	0	
DENND2C	163259	broad.mit.edu	37	1	115168534	115168534	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115168534T>G	uc001efd.1	-	4	774	c.72A>C	c.(70-72)AAA>AAC	p.K24N	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.K24N	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	24										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATTGAGAAATTTTTTGTTTGA	0.413													54	109					0	0	1	0	0	
AMPD1	270	broad.mit.edu	37	1	115216304	115216304	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115216304C>T	uc001efe.1	-	15	2125	c.2041G>A	c.(2041-2043)GAA>AAA	p.E681K	AMPD1_uc001eff.1_Missense_Mutation_p.E677K	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	681					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	CTTGCCACTTCGCACATATCA	0.433													45	51					0	0	1	0	0	
AMPD1	270	broad.mit.edu	37	1	115218219	115218219	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115218219C>A	uc001efe.1	-	12	1695	c.1611G>T	c.(1609-1611)AAG>AAT	p.K537N	AMPD1_uc001eff.1_Missense_Mutation_p.K533N	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	537					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	AAGATGGATTCTTTTCCAATG	0.478													42	82					6.5261e-18	7.59833e-18	1	1	0	
AMPD1	270	broad.mit.edu	37	1	115226903	115226903	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115226903A>C	uc001efe.1	-	5	548	c.464T>G	c.(463-465)TTT>TGT	p.F155C	AMPD1_uc001eff.1_Missense_Mutation_p.F151C	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	155					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GAACCTCTGAAACGACTTCTG	0.403													8	86					0	0	1	0	0	
SYCP1	6847	broad.mit.edu	37	1	115428199	115428199	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115428199T>C	uc001efr.2	+	13	1163	c.954T>C	c.(952-954)CAT>CAC	p.H318H	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Silent_p.H318H|SYCP1_uc009wgw.2_Silent_p.H318H	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	318	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGAAACAGCATCATTTGACTA	0.274													24	51					0	0	1	0	0	
TSHB	7252	broad.mit.edu	37	1	115576140	115576140	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:115576140A>G	uc001efs.1	+	2	225	c.157A>G	c.(157-159)ACA>GCA	p.T53A		NM_000549	NP_000540	P01222	TSHB_HUMAN	thyroid stimulating hormone, beta precursor	53					anatomical structure morphogenesis|cell-cell signaling|cellular nitrogen compound metabolic process|G-protein coupled receptor protein signaling pathway|hormone biosynthetic process|peptide hormone processing	extracellular region	hormone activity				0	Lung SC(450;0.211)	all_cancers(81;3.22e-07)|all_epithelial(167;1.4e-06)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		ATATTGTATGACACGGGTATG	0.378													59	123					0	0	1	0	0	
ATP1A1	476	broad.mit.edu	37	1	116941321	116941321	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:116941321G>A	uc001ege.2	+	16	2542	c.2203G>A	c.(2203-2205)GGG>AGG	p.G735R	ATP1A1_uc010owv.1_Missense_Mutation_p.G704R|ATP1A1_uc010oww.1_Missense_Mutation_p.G735R|ATP1A1_uc010owx.1_Missense_Mutation_p.G704R|C1orf203_uc009whb.2_Intron|ATP1A1_uc001egh.2_5'Flank	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	735	Cytoplasmic (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	GGTTGCTATGGGGATTGCTGG	0.498													50	108					0	0	1	0	0	
CD101	9398	broad.mit.edu	37	1	117560012	117560012	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:117560012A>C	uc010oxb.1	+	5	1587	c.1529A>C	c.(1528-1530)GAG>GCG	p.E510A	CD101_uc009whd.2_Missense_Mutation_p.E510A|CD101_uc010oxc.1_Missense_Mutation_p.E510A|CD101_uc010oxd.1_Missense_Mutation_p.E448A	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	510	Extracellular (Potential).|Ig-like C2-type 4.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GGCACATATGAGTGCAGAGTA	0.498													49	55					0	0	1	0	0	
CD101	9398	broad.mit.edu	37	1	117568169	117568169	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:117568169A>C	uc010oxb.1	+	8	2525	c.2467A>C	c.(2467-2469)AAT>CAT	p.N823H	CD101_uc009whd.2_Missense_Mutation_p.N823H|CD101_uc010oxc.1_Missense_Mutation_p.N823H|CD101_uc010oxd.1_Missense_Mutation_p.N761H	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	823	Ig-like C2-type 7.|Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CTGGACCGAAAATGTGACTGA	0.463													31	74					0	0	1	0	0	
TTF2	8458	broad.mit.edu	37	1	117617849	117617849	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:117617849G>A	uc001egy.2	+	5	663	c.643G>A	c.(643-645)GAC>AAC	p.D215N	TTF2_uc001egx.1_Missense_Mutation_p.D215N	NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	215					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		ACACAAAAGAGACTTTTCTGA	0.423													50	87					0	0	1	0	0	
TTF2	8458	broad.mit.edu	37	1	117631460	117631460	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:117631460G>A	uc001egy.2	+	13	2218	c.2198G>A	c.(2197-2199)CGA>CAA	p.R733Q		NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	733	Helicase ATP-binding.				mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		GCCTGGGCTCGAATCATATTG	0.478													62	86					0	0	1	0	0	
TTF2	8458	broad.mit.edu	37	1	117632771	117632771	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:117632771A>G	uc001egy.2	+	14	2457	c.2437A>G	c.(2437-2439)ACC>GCC	p.T813A		NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	813					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		AAGTATTTTAACCAAGAGCCT	0.468													54	143					0	0	1	0	0	
TRIM45	80263	broad.mit.edu	37	1	117659354	117659354	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:117659354G>A	uc001egz.2	-	3	1824	c.1236C>T	c.(1234-1236)GCC>GCT	p.A412A	TRIM45_uc009whe.2_Silent_p.A394A|TRIM45_uc001eha.2_Silent_p.A308A	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1	412	Filamin.					cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		GTTTCTCCCGGGCTCTGTGGA	0.498													19	38					0	0	1	0	0	
MAN1A2	10905	broad.mit.edu	37	1	117944919	117944919	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:117944919G>A	uc001ehd.1	+	2	1135	c.414G>A	c.(412-414)CAG>CAA	p.Q138Q	MAN1A2_uc009whg.1_Intron	NM_006699	NP_006690	O60476	MA1A2_HUMAN	mannosidase, alpha, class 1A, member 2	138	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity				0	Lung SC(450;0.225)	all_cancers(81;7.9e-06)|all_epithelial(167;7.39e-07)|all_lung(203;2.84e-06)|Lung NSC(69;1.99e-05)		Lung(183;0.0688)|Kidney(133;0.114)|LUSC - Lung squamous cell carcinoma(189;0.223)|KIRC - Kidney renal clear cell carcinoma(1967;0.237)|Colorectal(144;0.243)		CAGAAATTCAGACAGAGAAAA	0.403													20	46					0	0	1	0	0	
MAN1A2	10905	broad.mit.edu	37	1	118065574	118065574	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:118065574C>T	uc001ehd.1	+	13	2642	c.1921C>T	c.(1921-1923)CGA>TGA	p.R641*		NM_006699	NP_006690	O60476	MA1A2_HUMAN	mannosidase, alpha, class 1A, member 2	641	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity				0	Lung SC(450;0.225)	all_cancers(81;7.9e-06)|all_epithelial(167;7.39e-07)|all_lung(203;2.84e-06)|Lung NSC(69;1.99e-05)		Lung(183;0.0688)|Kidney(133;0.114)|LUSC - Lung squamous cell carcinoma(189;0.223)|KIRC - Kidney renal clear cell carcinoma(1967;0.237)|Colorectal(144;0.243)		TCCTGCTGTTCGATGAAAGCA	0.448													38	76					0	0	1	0	0	
SPAG17	200162	broad.mit.edu	37	1	118514668	118514668	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:118514668C>A	uc001ehk.2	-	45	6212	c.6144G>T	c.(6142-6144)GTG>GTT	p.V2048V		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	2048						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CAGAATCTTGCACCTTTGCAT	0.363													11	28					1.58986e-06	1.65575e-06	1	1	0	
SPAG17	200162	broad.mit.edu	37	1	118583459	118583459	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:118583459G>A	uc001ehk.2	-	22	3128	c.3060C>T	c.(3058-3060)CAC>CAT	p.H1020H		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1020						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TATTGTATCCGTGAAACTAGA	0.373													6	46					0	0	1	0	0	
SPAG17	200162	broad.mit.edu	37	1	118616546	118616546	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:118616546C>A	uc001ehk.2	-	17	2384	c.2316G>T	c.(2314-2316)AAG>AAT	p.K772N		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	772						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GCTGTGTTTTCTTTATGTCCT	0.348													71	118					1.59627e-33	1.96257e-33	1	1	0	
WARS2	10352	broad.mit.edu	37	1	119575586	119575586	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:119575586T>G	uc001ehn.2	-	6	1059	c.1031A>C	c.(1030-1032)GAA>GCA	p.E344A	WARS2_uc010oxf.1_Missense_Mutation_p.E250A|WARS2_uc001ehm.2_3'UTR|WARS2_uc010oxg.1_Missense_Mutation_p.E287A|WARS2_uc010oxh.1_3'UTR	NM_015836	NP_056651	Q9UGM6	SYWM_HUMAN	mitochondrial tryptophanyl tRNA synthetase 2	344					tryptophanyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|tryptophan-tRNA ligase activity				0	all_neural(166;0.187)	all_lung(203;2.48e-06)|Lung NSC(69;1.74e-05)|all_epithelial(167;0.000564)		Lung(183;0.0629)	L-Tryptophan(DB00150)	GTATGCTAATTCTTTGGCTTT	0.413													28	88					0	0	1	0	0	
HAO2	51179	broad.mit.edu	37	1	119927408	119927408	+	Missense_Mutation	SNP	C	T	T	rs142375074	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:119927408C>T	uc001ehq.1	+	5	645	c.293C>T	c.(292-294)GCG>GTG	p.A98V	HAO2_uc001ehr.1_Missense_Mutation_p.A98V	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	98	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		GCTGCCCAAGCGGCTGGTATC	0.547													27	46					0	0	1	0	0	
HSD3B1	3283	broad.mit.edu	37	1	120056677	120056677	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:120056677C>T	uc001ehv.1	+	4	676	c.531C>T	c.(529-531)GGC>GGT	p.G177G	HSD3B1_uc001ehw.2_Silent_p.G179G	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	177					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	TGAAAAACGGCGGCACCCTGT	0.512													63	89					0	0	1	0	0	
HMGCS2	3158	broad.mit.edu	37	1	120298174	120298174	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:120298174C>A	uc001eid.2	-	6	1114	c.1063G>T	c.(1063-1065)GCA>TCA	p.A355S	HMGCS2_uc010oxj.1_Missense_Mutation_p.A313S|HMGCS2_uc001eie.2_Missense_Mutation_p.A263S	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	355					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TTTAGAAGTGCTTTATCCAGG	0.537													159	428					5.60145e-70	6.99178e-70	1	1	0	
NBPF7	343505	broad.mit.edu	37	1	120381959	120381959	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:120381959A>C	uc010oxk.1	-	5	1307	c.686T>G	c.(685-687)ATC>AGC	p.I229S		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	229	NBPF 1.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		TGAATAAGTGATGGCACATTC	0.458													53	158					0	0	1	0	0	
NBPF7	343505	broad.mit.edu	37	1	120386979	120386979	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:120386979C>T	uc010oxk.1	-	1	801	c.180G>A	c.(178-180)CAG>CAA	p.Q60Q		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	60						cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		CAAGAAATTTCTGCTTCATGT	0.438											OREG0013730	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	108					0	0	1	0	0	
NOTCH2	4853	broad.mit.edu	37	1	120480508	120480508	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:120480508G>A	uc001eik.2	-	20	3565	c.3309C>T	c.(3307-3309)GTC>GTT	p.V1103V	NOTCH2_uc001eil.2_Silent_p.V1103V	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1103	EGF-like 29.|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGTCACAAGAGACATTGGGCA	0.488			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				17	46					0	0	1	0	0	
LOC647121	647121	broad.mit.edu	37	1	121306606	121306606	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:121306606T>G	uc009wht.1	+	1	183	c.154T>G	c.(154-156)TTG>GTG	p.L52V	LOC647121_uc001eiu.1_RNA					Homo sapiens cDNA FLJ46881 fis, clone UTERU3015647, moderately similar to Embigin precursor.												0						GCTGAGCTATTTGGTGCCCCT	0.428													30	50					0	0	1	0	0	
PPIAL4G	644591	broad.mit.edu	37	1	143767602	143767602	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:143767602A>C	uc001ejt.2	-	1	280	c.247T>G	c.(247-249)TTT>GTT	p.F83V		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	83	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						TCATCATCAAATTTCTCCCCA	0.473													16	304					0	0	1	0	0	
NBPF9	400818	broad.mit.edu	37	1	144618133	144618133	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:144618133G>T	uc009wig.1	+	6	406	c.330G>T	c.(328-330)AAG>AAT	p.K110N	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Missense_Mutation_p.K41N|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Missense_Mutation_p.K41N|NBPF9_uc010oyg.1_Missense_Mutation_p.K75N|NBPF9_uc009wii.1_Translation_Start_Site	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	110	Potential.					cytoplasm					0						CGCAGTTAAAGGAGAAGTTAC	0.507													38	516					7.77372e-23	9.28856e-23	1	1	0	
PDE4DIP	9659	broad.mit.edu	37	1	144854531	144854531	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:144854531G>T	uc001elw.3	-	42	7230	c.6939C>A	c.(6937-6939)TTC>TTA	p.F2313L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.F2207L|PDE4DIP_uc001elv.3_Missense_Mutation_p.F1320L	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	2313					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GGCTGACAATGAACTGTTCCA	0.527			T	PDGFRB	MPD								28	268					8.16721e-17	9.41672e-17	1	1	0	
PDE4DIP	9659	broad.mit.edu	37	1	144923689	144923689	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:144923689C>T	uc001elw.3	-	6	1059	c.768_splice	c.e6+1	p.K256_splice	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Splice_Site_p.K322_splice|PDE4DIP_uc001emc.1_Splice_Site_p.K256_splice|PDE4DIP_uc001emd.1_Splice_Site_p.K256_splice|PDE4DIP_uc001emb.1_Splice_Site_p.K419_splice|PDE4DIP_uc001eme.1_5'Flank|PDE4DIP_uc001emf.1_Splice_Site_p.K43_splice	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform						cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		ACTAATCATACCTTGTTGGTG	0.458			T	PDGFRB	MPD								46	286					0	0	1	0	0	
PDE4DIP	9659	broad.mit.edu	37	1	144955243	144955243	+	Missense_Mutation	SNP	T	C	C	rs142987550		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:144955243T>C	uc001elw.3	-	2	482	c.191A>G	c.(190-192)GAC>GGC	p.D64G	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.D130G|PDE4DIP_uc001emc.1_Missense_Mutation_p.D64G|PDE4DIP_uc001emd.1_Missense_Mutation_p.D64G|PDE4DIP_uc001emg.1_Missense_Mutation_p.D64G|PDE4DIP_uc001emh.2_Missense_Mutation_p.D201G	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	64	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTGTTTCTTGTCCTGGAGTTC	0.403			T	PDGFRB	MPD								28	39					0	0	1	0	0	
PDE4DIP	9659	broad.mit.edu	37	1	145075016	145075016	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:145075016T>G	uc001emk.2	-	2	495	c.278A>C	c.(277-279)AAG>ACG	p.K93T	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001emh.2_Intron			Q5VU43	MYOME_HUMAN	SubName: Full=Phosphodiesterase 4D interacting protein;	Error:Variant_position_missing_in_Q5VU43_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TAGAAGGAACTTGTCCTGCAT	0.493			T	PDGFRB	MPD								9	80					0	0	1	0	0	
SEC22B	9554	broad.mit.edu	37	1	145103956	145103956	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:145103956C>T	uc001eml.1	+	4	264	c.124C>T	c.(124-126)CGA>TGA	p.R42*	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron	NM_004892	NP_004883	O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B	42	Longin.|Cytoplasmic (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding				0						GTAACTCTTTCGAAAGTTGAA	0.388													12	40					0	0	1	0	0	
NBPF10	100132406	broad.mit.edu	37	1	145325967	145325967	+	Silent	SNP	G	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:145325967G>C	uc001end.3	+	32	4100	c.4065G>C	c.(4063-4065)CTG>CTC	p.L1355L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oym.1_Intron|NBPF10_uc010oyn.1_Intron|NBPF10_uc010oyo.1_Intron|NBPF10_uc010oyp.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	1280											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GCAGGGAGCTGCTGGATGAGA	0.478													25	81					0	0	1	0	0	
NBPF10	100132406	broad.mit.edu	37	1	145368509	145368509	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:145368509C>T	uc001end.3	+	86	10747	c.10712C>T	c.(10711-10713)TCG>TTG	p.S3571L	NBPF9_uc010oye.1_Missense_Mutation_p.S855L|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Missense_Mutation_p.S424L|NBPF10_uc010oyk.1_Missense_Mutation_p.S212L|NBPF10_uc010oyl.1_Missense_Mutation_p.S212L	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3496											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGATGTTATTCGACTCCGTCA	0.463													142	463					0	0	1	0	0	
HFE2	148738	broad.mit.edu	37	1	145415691	145415691	+	Silent	SNP	C	T	T	rs139281553	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:145415691C>T	uc001eni.2	+	3	835	c.510C>T	c.(508-510)TTC>TTT	p.F170F	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_Silent_p.F57F|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	170			F -> S (in HFE2A).		axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCGCTTCCTTCGGGGACCCCC	0.612													63	63					0	0	1	0	0	
HFE2	148738	broad.mit.edu	37	1	145416773	145416773	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:145416773T>G	uc001eni.2	+	4	1443	c.1118T>G	c.(1117-1119)TTT>TGT	p.F373C	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Missense_Mutation_p.F147C|HFE2_uc001enk.2_Missense_Mutation_p.F260C|HFE2_uc001enl.2_Missense_Mutation_p.F147C	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	373					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GATCCCAACTTTACCGTGGCA	0.517													31	64					0	0	1	0	0	
LOC728989	728989	broad.mit.edu	37	1	146496375	146496375	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:146496375C>A	uc001epd.2	-	2	199	c.125G>T	c.(124-126)AGA>ATA	p.R42I		NR_024442				SubName: Full=cDNA FLJ59595, highly similar to Homo sapiens phosphodiesterase 4D interacting protein, transcript variant 1, mRNA;												0						ACCATTTGTTCTGTTGATTAT	0.458													39	45					1.47197e-15	1.68038e-15	1	1	0	
PDIA3P	171423	broad.mit.edu	37	1	146650311	146650311	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:146650311C>A	uc001epg.1	+	1	882	c.619C>A	c.(619-621)CGT>AGT	p.R207S		NR_002305				SubName: Full=cDNA FLJ53558, highly similar to Protein disulfide-isomerase A3 (EC 5.3.4.1);												0						CATCTTATTTCGTCCTTCACA	0.403													20	75					1.22574e-08	1.30575e-08	1	1	0	
FMO5	2330	broad.mit.edu	37	1	146672742	146672742	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:146672742A>G	uc001epi.2	-	7	1564	c.1175T>C	c.(1174-1176)GTA>GCA	p.V392A	FMO5_uc001eph.3_Missense_Mutation_p.V392A|FMO5_uc001epj.2_Intron	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	392						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					ACCTTTAAATACCTGAGTGGC	0.393													47	45					0	0	1	0	0	
FMO5	2330	broad.mit.edu	37	1	146683979	146683979	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:146683979A>G	uc001epi.2	-	5	1001	c.612T>C	c.(610-612)ATT>ATC	p.I204I	FMO5_uc001eph.3_Silent_p.I204I|FMO5_uc001epj.2_Silent_p.I204I|FMO5_uc001epk.3_Silent_p.I204I	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	204						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					CTGTTTGGCTAATCTCTACAG	0.443													84	85					0	0	1	0	0	
BCL9	607	broad.mit.edu	37	1	147091096	147091096	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:147091096G>T	uc001epq.2	+	8	1875	c.1135G>T	c.(1135-1137)GAA>TAA	p.E379*	BCL9_uc010ozr.1_Nonsense_Mutation_p.E305*	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	379	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					TGATGAGAAAGAATTCACAGG	0.527			T	IGH@|IGL@	B-ALL								48	186					1.51926e-22	1.8124e-22	1	1	0	
Unknown	0	broad.mit.edu	37	1	148882301	148882301	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:148882301T>C	uc009wkv.1	+	4		c.330T>C								Homo sapiens cDNA, FLJ17483.																		TACTTGCCTGTTCTCAGTGTG	0.343													24	233					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	1	148890221	148890221	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:148890221C>A	uc009wkv.1	+	8		c.802C>A								Homo sapiens cDNA, FLJ17483.																		TGCTGTGGATCTTCACTTGTA	0.269													14	128					1.33834e-09	1.43956e-09	1	1	0	
SV2A	9900	broad.mit.edu	37	1	149879607	149879607	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:149879607A>G	uc001etg.2	-	9	2022	c.1531T>C	c.(1531-1533)TAC>CAC	p.Y511H	SV2A_uc009wlk.2_5'Flank|SV2A_uc001eth.2_Missense_Mutation_p.Y511H	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	511	Extracellular (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TCATTGAAGTACTGCCCGCCT	0.478													74	73					0	0	1	0	0	
PLEKHO1	51177	broad.mit.edu	37	1	150128372	150128372	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:150128372T>G	uc001ett.2	+	3	568	c.290T>G	c.(289-291)CTT>CGT	p.L97R	PLEKHO1_uc001etr.2_5'UTR|PLEKHO1_uc001ets.2_5'UTR|PLEKHO1_uc001etu.2_5'UTR	NM_016274	NP_057358	Q53GL0	PKHO1_HUMAN	pleckstrin homology domain containing, family O	97	PH.					cytoplasm|nucleus|plasma membrane				lung(1)	1	Lung NSC(24;7.78e-28)|Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			AAGTTTACTCTTGCCCACTCC	0.502													19	101					0	0	1	0	0	
ANP32E	81611	broad.mit.edu	37	1	150204192	150204192	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:150204192C>A	uc001etw.2	-	2	497	c.127G>T	c.(127-129)GAA>TAA	p.E43*	ANP32E_uc010pbu.1_5'UTR|ANP32E_uc010pbv.1_Nonsense_Mutation_p.E43*|ANP32E_uc001etv.3_Nonsense_Mutation_p.E43*|ANP32E_uc010pbw.1_Nonsense_Mutation_p.E43*	NM_030920	NP_112182	Q9BTT0	AN32E_HUMAN	acidic (leucine-rich) nuclear phosphoprotein 32	43	LRR 2.					cytoplasmic membrane-bounded vesicle|nucleus	phosphatase inhibitor activity				0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			AATTCTAGTTCTTTGAAAGTA	0.398													38	99					6.19805e-25	7.45915e-25	1	1	0	
ECM1	1893	broad.mit.edu	37	1	150485203	150485203	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:150485203A>C	uc001eus.2	+	9	1506	c.1307A>C	c.(1306-1308)AAA>ACA	p.K436T	ECM1_uc001eut.2_Missense_Mutation_p.K311T|ECM1_uc001euu.2_Missense_Mutation_p.K465T|ECM1_uc001euv.2_Missense_Mutation_p.K463T|ECM1_uc009wlu.2_Missense_Mutation_p.K196T	NM_004425	NP_004416	Q16610	ECM1_HUMAN	extracellular matrix protein 1 isoform 1	436					angiogenesis|biomineral tissue development|negative regulation of bone mineralization|negative regulation of peptidase activity|ossification|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of I-kappaB kinase/NF-kappaB cascade	proteinaceous extracellular matrix	laminin binding|protease binding|protein C-terminus binding|signal transducer activity			ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.29e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CAACATAGTAAACATATTCCT	0.517													90	309					0	0	1	0	0	
ARNT	405	broad.mit.edu	37	1	150784538	150784538	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:150784538C>A	uc001evr.1	-	22	2472	c.2329G>T	c.(2329-2331)GAA>TAA	p.E777*	ARNT_uc010pck.1_Nonsense_Mutation_p.E265*|ARNT_uc001evs.1_Nonsense_Mutation_p.E762*|ARNT_uc009wmb.1_Nonsense_Mutation_p.E763*|ARNT_uc009wmc.1_Nonsense_Mutation_p.E775*|ARNT_uc009wmd.1_Nonsense_Mutation_p.E761*	NM_001668	NP_001659	P27540	ARNT_HUMAN	aryl hydrocarbon receptor nuclear translocator	777					positive regulation of hormone biosynthetic process|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hypoxia		aryl hydrocarbon receptor binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity			skin(4)|lung(3)|central_nervous_system(1)|kidney(1)	9	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.02)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			TCAGGGAATTCTTCATTGTTG	0.403			T	ETV6	AML								15	97					3.51602e-12	3.88498e-12	1	1	0	
SETDB1	9869	broad.mit.edu	37	1	150902487	150902487	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:150902487A>C	uc001evu.2	+	3	495	c.305A>C	c.(304-306)AAG>ACG	p.K102T	SETDB1_uc009wmf.2_Missense_Mutation_p.K102T|SETDB1_uc001evv.2_Missense_Mutation_p.K102T|SETDB1_uc001evw.3_Missense_Mutation_p.K102T|SETDB1_uc009wmg.1_Missense_Mutation_p.K102T	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	102					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			TTCTACTCCAAGCTGGGACTA	0.428													105	74					0	0	1	0	0	
SETDB1	9869	broad.mit.edu	37	1	150915523	150915523	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:150915523A>C	uc001evu.2	+	7	1059	c.869A>C	c.(868-870)AAG>ACG	p.K290T	SETDB1_uc009wmf.2_Missense_Mutation_p.K290T|SETDB1_uc001evv.2_Missense_Mutation_p.K290T|SETDB1_uc001evw.3_Missense_Mutation_p.K290T|SETDB1_uc009wmg.1_Missense_Mutation_p.K290T	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	290	Tudor 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			GTCAAAAACAAGCTCAGGTAC	0.512													52	115					0	0	1	0	0	
LASS2	29956	broad.mit.edu	37	1	150941396	150941396	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:150941396C>T	uc001evy.2	-	2	558	c.171G>A	c.(169-171)GAG>GAA	p.E57E	LASS2_uc001evz.2_Silent_p.E57E|LASS2_uc009wmh.2_Intron	NM_181746	NP_859530	Q96G23	CERS2_HUMAN	LAG1 longevity assurance 2	57	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity				0	all_lung(15;8.07e-35)|Lung NSC(24;7.93e-31)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			ATGCTTACAGCTCAAAGAAGT	0.498													27	118					0	0	1	0	0	
FAM63A	55793	broad.mit.edu	37	1	150975200	150975200	+	Translation_Start_Site	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:150975200A>C	uc001ewf.2	-	3	1578	c.-106T>G	c.(-108--104)ATTTC>ATGTC		FAM63A_uc001ewc.2_Intron|FAM63A_uc010pcm.1_Intron|FAM63A_uc001ewd.2_Intron|FAM63A_uc001ewe.2_Intron|FAM63A_uc010pcn.1_Intron|FAM63A_uc001ewg.2_Translation_Start_Site	NM_018379	NP_001156731	Q8N5J2	FA63A_HUMAN	hypothetical protein LOC55793 isoform 1								protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			ATAAGAAGGAAATCAGTGGGC	0.488													16	8					0	0	1	0	0	
ZNF687	57592	broad.mit.edu	37	1	151260153	151260153	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:151260153A>C	uc001exq.2	+	2	1484	c.1386A>C	c.(1384-1386)GGA>GGC	p.G462G	ZNF687_uc001exp.1_Silent_p.G471G|ZNF687_uc009wmo.2_Silent_p.G462G|ZNF687_uc009wmp.2_Silent_p.G462G	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	462					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GGACTGGGGGACAGAAGGTGA	0.612													24	72					0	0	1	0	0	
ZNF687	57592	broad.mit.edu	37	1	151260430	151260430	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:151260430C>T	uc001exq.2	+	2	1761	c.1663C>T	c.(1663-1665)CGG>TGG	p.R555W	ZNF687_uc001exp.1_Missense_Mutation_p.R564W|ZNF687_uc009wmo.2_Missense_Mutation_p.R555W|ZNF687_uc009wmp.2_Missense_Mutation_p.R555W	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	555					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CTATGACCGTCGGAGCATGCG	0.627													75	57					0	0	1	0	0	
RFX5	5993	broad.mit.edu	37	1	151315152	151315152	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:151315152T>C	uc001exv.1	-	11	1575	c.1361A>G	c.(1360-1362)GAT>GGT	p.D454G	RFX5_uc001exw.1_Missense_Mutation_p.D454G|RFX5_uc009wmr.1_Missense_Mutation_p.D454G|RFX5_uc010pcx.1_Missense_Mutation_p.D414G	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	454						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ATCCTCTATATCCTGCTTTGC	0.532													171	415					0	0	1	0	0	
SELENBP1	8991	broad.mit.edu	37	1	151338253	151338253	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:151338253C>T	uc001exx.2	-	8	960	c.913G>A	c.(913-915)GAA>AAA	p.E305K	SELENBP1_uc010pcy.1_Missense_Mutation_p.E347K|SELENBP1_uc001exy.2_Missense_Mutation_p.E202K|SELENBP1_uc001exz.2_Missense_Mutation_p.E202K|SELENBP1_uc010pcz.1_Missense_Mutation_p.E243K|SELENBP1_uc009wms.2_Missense_Mutation_p.E141K|SELENBP1_uc009wmt.2_Missense_Mutation_p.E202K|SELENBP1_uc001eya.2_Missense_Mutation_p.E241K|SELENBP1_uc009wmu.2_Missense_Mutation_p.E202K	NM_003944	NP_003935	Q13228	SBP1_HUMAN	selenium binding protein 1	305				EM -> GV (in Ref. 1; AAB02395).	protein transport	cytosol|membrane|nucleolus	protein binding|selenium binding				0	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CCTGGCATTTCGGGCAGCAGC	0.567													83	261					0	0	1	0	0	
PSMB4	5692	broad.mit.edu	37	1	151372650	151372650	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:151372650C>A	uc001eyc.1	+	2	357	c.334C>A	c.(334-336)CTC>ATC	p.L112I	PSMB4_uc010pda.1_Missense_Mutation_p.L112I|PSMB4_uc001eyb.1_Missense_Mutation_p.L112I	NM_002796	NP_002787	P28070	PSB4_HUMAN	proteasome beta 4 subunit	112					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GAAGCAAGTTCTCGGCCAGAT	0.517													47	180					8.20599e-20	9.66132e-20	1	1	0	
POGZ	23126	broad.mit.edu	37	1	151378310	151378310	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:151378310G>T	uc001eyd.1	-	19	3507	c.3201C>A	c.(3199-3201)ATC>ATA	p.I1067I	POGZ_uc001eye.1_Silent_p.I1014I|POGZ_uc010pdb.1_Silent_p.I1058I|POGZ_uc001eyf.1_Silent_p.I1023I|POGZ_uc010pdc.1_Silent_p.I1005I|POGZ_uc009wmv.1_Silent_p.I972I|POGZ_uc010pdd.1_Silent_p.I558I	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	1067	HTH CENPB-type.				cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ACTCATAGGAGATCTTAAACC	0.552													21	89					1.22574e-08	1.30575e-08	1	1	0	
CGN	57530	broad.mit.edu	37	1	151492667	151492667	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:151492667G>A	uc009wmw.2	+	3	1043	c.899G>A	c.(898-900)CGA>CAA	p.R300Q		NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	294	Interacts with ZO-2.|Head.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			GACCTCCTTCGAGACCAGCAG	0.453													15	45					0	0	1	0	0	
CELF3	11189	broad.mit.edu	37	1	151688369	151688369	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:151688369T>C	uc001eys.1	-	1	922	c.128A>G	c.(127-129)TAC>TGC	p.Y43C	CELF3_uc001eyr.2_Missense_Mutation_p.Y43C|CELF3_uc009wmy.2_Missense_Mutation_p.Y43C|CELF3_uc009wmx.1_Missense_Mutation_p.Y43C|CELF3_uc001eyt.2_5'UTR|CELF3_uc010pdi.1_Missense_Mutation_p.Y43C|C1orf230_uc001eyu.2_Intron	NM_007185	NP_009116	Q5SZQ8	CELF3_HUMAN	trinucleotide repeat containing 4	43	RRM 1.				nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	mRNA binding|nucleotide binding			ovary(1)|central_nervous_system(1)	2						CAGCCCGGTGTACTTGTCCTT	0.607													51	73					0	0	1	0	0	
TCHHL1	126637	broad.mit.edu	37	1	152057614	152057614	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152057614G>T	uc001ezo.1	-	3	2609	c.2544C>A	c.(2542-2544)GTC>GTA	p.V848V		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	848							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			AGTTGAAAAAGACAGAACAAT	0.507													27	110					6.12954e-19	7.17843e-19	1	1	0	
TCHHL1	126637	broad.mit.edu	37	1	152060019	152060019	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152060019G>A	uc001ezo.1	-	3	204	c.139C>T	c.(139-141)CCC>TCC	p.P47S		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	47							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			AGGACACAGGGCTGCATGAAA	0.373													31	84					0	0	1	0	0	
TCHH	7062	broad.mit.edu	37	1	152081316	152081316	+	Silent	SNP	A	G	G	rs143332338	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152081316A>G	uc001ezp.2	-	2	4377	c.4377T>C	c.(4375-4377)CGT>CGC	p.R1459R	TCHH_uc009wne.1_Silent_p.R1459R	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1459	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATTTTCTGTGACGCTCCTGGC	0.547													128	104					0	0	1	0	0	
HRNR	388697	broad.mit.edu	37	1	152185824	152185824	+	Nonsense_Mutation	SNP	G	A	A	rs137986007	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152185824G>A	uc001ezt.1	-	3	8357	c.8281C>T	c.(8281-8283)CGA>TGA	p.R2761*		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2761	30.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCCCATGTCGGCCATAGCCA	0.597													144	118					0	0	1	0	0	
HRNR	388697	broad.mit.edu	37	1	152187700	152187700	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152187700T>C	uc001ezt.1	-	3	6481	c.6405A>G	c.(6403-6405)CAA>CAG	p.Q2135Q		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2135					keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TAGAGCCGTGTTGTCCGTAGC	0.567													91	544					0	0	1	0	0	
HRNR	388697	broad.mit.edu	37	1	152188414	152188414	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152188414G>A	uc001ezt.1	-	3	5767	c.5691C>T	c.(5689-5691)TAC>TAT	p.Y1897Y		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1897	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CGTGTTGTTCGTAGCTGGAGG	0.537													160	506					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152275925	152275925	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152275925T>C	uc001ezu.1	-	3	11473	c.11437A>G	c.(11437-11439)ACA>GCA	p.T3813A		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3813	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCATTACGTGTTTCTCTGCTT	0.572									Ichthyosis				160	581					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152276355	152276355	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152276355T>C	uc001ezu.1	-	3	11043	c.11007A>G	c.(11005-11007)GGA>GGG	p.G3669G		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3669	Filaggrin 22.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTCTGAATGTCCCTCACTGT	0.592									Ichthyosis				140	316					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152279605	152279605	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152279605G>A	uc001ezu.1	-	3	7793	c.7757C>T	c.(7756-7758)TCT>TTT	p.S2586F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2586	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTGGAAGCAGACCCAGACCA	0.552									Ichthyosis				144	139					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152285754	152285754	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152285754T>C	uc001ezu.1	-	3	1644	c.1608A>G	c.(1606-1608)GTA>GTG	p.V536V	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	536	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGACCTATTTACCGATTGCT	0.587									Ichthyosis				197	582					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152286132	152286132	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152286132G>A	uc001ezu.1	-	3	1266	c.1230C>T	c.(1228-1230)AGC>AGT	p.S410S	uc001ezv.2_RNA	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	410	Ser-rich.|Filaggrin 2.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCCACGATCGCTGACTGCAG	0.577									Ichthyosis				372	299					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152286754	152286754	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152286754C>A	uc001ezu.1	-	3	644	c.608G>T	c.(607-609)AGA>ATA	p.R203I	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	203	Potential.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCTTCAAGTCTTTCACTTAG	0.323									Ichthyosis				68	50					1.85257e-25	2.23411e-25	1	1	0	
CRNN	49860	broad.mit.edu	37	1	152382288	152382288	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152382288G>A	uc001ezx.2	-	3	1344	c.1270C>T	c.(1270-1272)CGC>TGC	p.R424C		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	424					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCACACAGCGCCTTGGGTGA	0.602													26	90					0	0	1	0	0	
KPRP	448834	broad.mit.edu	37	1	152732460	152732460	+	Silent	SNP	C	T	T	rs146826460	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152732460C>T	uc001fal.1	+	2	454	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	132	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGACTTGCTTCGTAGAATGTG	0.478													216	173					0	0	1	0	0	
LCE1B	353132	broad.mit.edu	37	1	152784956	152784956	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152784956C>T	uc001faq.2	+	1	510	c.34C>T	c.(34-36)CCC>TCC	p.P12S		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	12	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCAGTGCCAGCCccctcccaa	0.483													106	98					0	0	1	0	0	
SMCP	4184	broad.mit.edu	37	1	152856943	152856943	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152856943C>T	uc001fat.2	+	2	190	c.45C>T	c.(43-45)GGC>GGT	p.G15G		NM_030663	NP_109588	P49901	MCSP_HUMAN	sperm mitochondria-associated cysteine-rich	15	2.|7 X 7 (OR 8) AA approximate repeats.				penetration of zona pellucida|sperm motility	mitochondrial membrane					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CAGCAAAAGGCAATCAATGCT	0.458													35	113					0	0	1	0	0	
SPRR3	6707	broad.mit.edu	37	1	152975767	152975767	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:152975767A>G	uc001fax.3	+	3	421	c.271A>G	c.(271-273)ACC>GCC	p.T91A	SPRR3_uc001faz.3_Missense_Mutation_p.T91A|SPRR3_uc001fay.2_Missense_Mutation_p.T83A	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	91	7.|14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCCAGGCTGTACCAAGGTCCC	0.592													19	97					0	0	1	0	0	
SPRR2A	6700	broad.mit.edu	37	1	153029005	153029005	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:153029005C>T	uc001fbd.2	-	2	268	c.207G>A	c.(205-207)CCG>CCA	p.P69P	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_RNA|SPRR2A_uc009woa.2_RNA	NM_005988	NP_005979	P35326	SPR2A_HUMAN	small proline-rich protein 2A	69					keratinization	cornified envelope|cytoplasm	binding			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			ACTTGCTCTTCGGTGGATACT	0.517													46	146					0	0	1	0	0	
PGLYRP4	57115	broad.mit.edu	37	1	153314133	153314133	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:153314133C>T	uc001fbo.2	-	6	660	c.595G>A	c.(595-597)GCC>ACC	p.A199T	PGLYRP4_uc001fbp.2_Missense_Mutation_p.A195T	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	199					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGCCGAGGGGCCAGGCAGTTC	0.547													44	124					0	0	1	0	0	
S100A7A	338324	broad.mit.edu	37	1	153391694	153391694	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:153391694T>G	uc001fbt.1	+	3	272	c.215T>G	c.(214-216)TTT>TGT	p.F72C		NM_176823	NP_789793	Q86SG5	S1A7A_HUMAN	S100 calcium binding protein A7-like 1	72	2; high affinity (Potential).|EF-hand 2.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			AAGATTGATTTTTCTGAGTTT	0.478													61	39					0	0	1	0	0	
S100A7	6278	broad.mit.edu	37	1	153430395	153430395	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:153430395T>C	uc001fbv.1	-	3	264	c.193A>G	c.(193-195)AAT>GAT	p.N65D		NM_002963	NP_002954	P31151	S10A7_HUMAN	S100 calcium binding protein A7	65	2; high affinity.|EF-hand 2.				angiogenesis|defense response to Gram-negative bacterium|innate immune response|keratinocyte differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|response to lipopolysaccharide|response to reactive oxygen species|sequestering of metal ion	cytosol|endoplasmic reticulum|extracellular region|focal adhesion|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding			skin(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			TTATCCTCATTCTTGTCCTTT	0.423													25	89					0	0	1	0	0	
ILF2	3608	broad.mit.edu	37	1	153638198	153638198	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:153638198G>A	uc001fcr.2	-	7	482	c.401C>T	c.(400-402)GCT>GTT	p.A134V	ILF2_uc010pdy.1_Missense_Mutation_p.A96V|ILF2_uc009wok.2_Intron|ILF2_uc009wol.1_Missense_Mutation_p.A96V	NM_004515	NP_004506	Q12905	ILF2_HUMAN	interleukin enhancer binding factor 2	134	DZF.				immune response|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|ribonucleoprotein complex	ATP binding|DNA binding|double-stranded RNA binding|protein binding|transferase activity				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGCAGCAACAGCTTCCACTAA	0.393													41	137					0	0	1	0	0	
NPR1	4881	broad.mit.edu	37	1	153662791	153662791	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:153662791G>T	uc001fcs.3	+	20	3385	c.2964G>T	c.(2962-2964)AAG>AAT	p.K988N	NPR1_uc010pdz.1_Missense_Mutation_p.K734N|NPR1_uc010pea.1_Missense_Mutation_p.K466N	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	988	Guanylate cyclase.|Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TGGGACTGAAGATGCCCCGTT	0.577													4	5					0.000602214	0.000612381	1	1	0	
INTS3	65123	broad.mit.edu	37	1	153719761	153719761	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:153719761T>C	uc009wom.2	+	6	660	c.439T>C	c.(439-441)TGG>CGG	p.W147R	INTS3_uc001fct.2_Missense_Mutation_p.W147R|INTS3_uc001fcu.2_5'UTR|INTS3_uc001fcv.2_5'UTR	NM_023015	NP_075391	Q68E01	INT3_HUMAN	integrator complex subunit 3	147					DNA repair|G2/M transition checkpoint|response to ionizing radiation|snRNA processing	integrator complex|SOSS complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TTAGTTGGTGTGGTTGGTACG	0.448													18	55					0	0	1	0	0	
DENND4B	9909	broad.mit.edu	37	1	153913426	153913426	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:153913426G>A	uc001fdd.1	-	9	1681	c.1280C>T	c.(1279-1281)TCG>TTG	p.S427L		NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	427	DENN.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TGGCCGCAGCGAGTGGACTAG	0.637													9	9					0	0	1	0	0	
RPS27	6232	broad.mit.edu	37	1	153963678	153963678	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:153963678T>G	uc001fdv.2	+	2	128	c.94T>G	c.(94-96)TTC>GTC	p.F32V		NM_001030	NP_001021	P42677	RS27_HUMAN	ribosomal protein S27	32					cell proliferation|endocrine pancreas development|mitotic prometaphase|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleus	DNA binding|structural constituent of ribosome|zinc ion binding				0	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CAATTCCTACTTCATGGATGT	0.502													6	36					0	0	1	0	0	
NUP210L	91181	broad.mit.edu	37	1	154026819	154026819	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154026819A>G	uc001fdw.2	-	25	3440	c.3368T>C	c.(3367-3369)GTG>GCG	p.V1123A	NUP210L_uc009woq.2_Missense_Mutation_p.V32A|NUP210L_uc010peh.1_Missense_Mutation_p.V1123A	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1123						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AACAACAGCCACGGTCTGATT	0.463													9	127					0	0	1	0	0	
NUP210L	91181	broad.mit.edu	37	1	154112362	154112362	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154112362C>A	uc001fdw.2	-	5	705	c.633G>T	c.(631-633)GAG>GAT	p.E211D	NUP210L_uc010peh.1_Missense_Mutation_p.E211D	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	211						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CTCCTTGTTTCTCCTCTTTTT	0.353													276	246					8.34256e-132	1.04276e-131	1	1	0	
TPM3	7170	broad.mit.edu	37	1	154141803	154141803	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154141803C>T	uc001fec.1	-	9	947	c.832G>A	c.(832-834)GCC>ACC	p.A278T	TPM3_uc001fdx.1_Intron|TPM3_uc010pei.1_Intron|TPM3_uc001fdy.1_Intron|TPM3_uc001fdz.1_Intron|TPM3_uc001fea.1_Intron|TPM3_uc001feb.1_Intron|TPM3_uc010pej.1_Intron|TPM3_uc009wor.2_Intron|TPM3_uc001fed.1_Missense_Mutation_p.A241T	NM_152263	NP_689476	P06753	TPM3_HUMAN	tropomyosin 3 isoform 1	277	By similarity.				cellular component movement|muscle filament sliding|regulation of muscle contraction	cytosol|muscle thin filament tropomyosin|stress fiber	actin binding		TPM3/ALK(33)	haematopoietic_and_lymphoid_tissue(22)|soft_tissue(11)|skin(1)	34	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)					TCATTGAGGGCGTGGTCCAGC	0.532			T	NTRK1|ALK	papillary thyroid|ALCL								62	43					0	0	1	0	0	
TPM3	7170	broad.mit.edu	37	1	154163762	154163762	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154163762T>G	uc001fec.1	-	2	258	c.143A>C	c.(142-144)CAG>CCG	p.Q48P		NM_152263	NP_689476	P06753	TPM3_HUMAN	tropomyosin 3 isoform 1	47	By similarity.				cellular component movement|muscle filament sliding|regulation of muscle contraction	cytosol|muscle thin filament tropomyosin|stress fiber	actin binding		TPM3/ALK(33)	haematopoietic_and_lymphoid_tissue(22)|soft_tissue(11)|skin(1)	34	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)					CAGCTTCTTCTGCATGGCTGC	0.517			T	NTRK1|ALK	papillary thyroid|ALCL								28	122					0	0	1	0	0	
UBAP2L	9898	broad.mit.edu	37	1	154228216	154228216	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154228216G>A	uc001fep.3	+	18	2309	c.2142G>A	c.(2140-2142)TCG>TCA	p.S714S	UBAP2L_uc009wot.2_Silent_p.S714S|UBAP2L_uc010pek.1_Silent_p.S706S|UBAP2L_uc010pel.1_Silent_p.S724S|UBAP2L_uc010pen.1_Silent_p.S628S|UBAP2L_uc001feq.2_5'UTR|UBAP2L_uc001fer.2_5'Flank	NM_014847	NP_055662	Q14157	UBP2L_HUMAN	ubiquitin associated protein 2-like isoform a	714					binding of sperm to zona pellucida		protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(78;1.09e-30)|Lung NSC(65;1.66e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GGCGCACTTCGACATCCACTC	0.433													18	210					0	0	1	0	0	
ATP8B2	57198	broad.mit.edu	37	1	154315667	154315667	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154315667G>A	uc001fex.2	+	16	1631	c.1631G>A	c.(1630-1632)CGC>CAC	p.R544H		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	530	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			TTTGTTTTCCGCTCTCGCACC	0.562													49	75					0	0	1	0	0	
TDRD10	126668	broad.mit.edu	37	1	154493951	154493951	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154493951C>T	uc009wow.2	+	6	1203	c.365C>T	c.(364-366)CCG>CTG	p.P122L	TDRD10_uc001ffd.2_Missense_Mutation_p.P122L|TDRD10_uc001ffe.2_Missense_Mutation_p.P43L	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	122							nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			CCTCGGGCCCCGCTGGTATGT	0.527													55	231					0	0	1	0	0	
TDRD10	126668	broad.mit.edu	37	1	154517377	154517377	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154517377G>A	uc009wow.2	+	11	1742	c.904G>A	c.(904-906)GAC>AAC	p.D302N	TDRD10_uc001ffd.2_Missense_Mutation_p.D302N|TDRD10_uc001ffe.2_Missense_Mutation_p.D223N	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	302	Tudor.						nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			AGACAGCGACGACTTCTGGAC	0.552													17	84					0	0	1	0	0	
CHRNB2	1141	broad.mit.edu	37	1	154543740	154543740	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154543740G>A	uc001ffg.2	+	5	705	c.441G>A	c.(439-441)CCG>CCA	p.P147P		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	147	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	TCTGGCTGCCGCCTGCCATCT	0.537													23	76					0	0	1	0	0	
KCNN3	3782	broad.mit.edu	37	1	154685971	154685971	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154685971T>C	uc001ffp.2	-	7	2182	c.1868A>G	c.(1867-1869)GAC>GGC	p.D623G	KCNN3_uc001ffo.2_Missense_Mutation_p.D318G	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	628	Calmodulin-binding (By similarity).					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GTTGGCTTGGTCACTCAGCTT	0.537													23	73					0	0	1	0	0	
KCNN3	3782	broad.mit.edu	37	1	154744733	154744733	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154744733C>T	uc001ffp.2	-	3	1480	c.1166G>A	c.(1165-1167)CGC>CAC	p.R389H	KCNN3_uc001ffo.2_Missense_Mutation_p.R84H|KCNN3_uc009wox.1_Missense_Mutation_p.R389H	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	394						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GAAGGCCAGGCGTGCCGTCCA	0.597													34	31					0	0	1	0	0	
FLAD1	80308	broad.mit.edu	37	1	154960706	154960706	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:154960706C>A	uc001fgf.1	+	2	852	c.498C>A	c.(496-498)TTC>TTA	p.F166L	FLAD1_uc001fgc.2_Missense_Mutation_p.F67L|FLAD1_uc001fgd.1_Missense_Mutation_p.F166L|FLAD1_uc001fge.1_Missense_Mutation_p.F69L|FLAD1_uc001fgg.1_Missense_Mutation_p.F69L|FLAD1_uc001fgh.1_5'UTR	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	166	Molybdenum cofactor biosynthesis protein- like.				FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TCACTTCTTTCTCCAACCGCT	0.567													39	124					1.90571e-15	2.17219e-15	1	1	0	
FAM189B	10712	broad.mit.edu	37	1	155223732	155223732	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:155223732A>G	uc001fjm.2	-	4	1037	c.431T>C	c.(430-432)CTC>CCC	p.L144P	RAG1AP1_uc010pey.1_Intron|FAM189B_uc009wql.2_5'Flank|FAM189B_uc001fjn.2_Intron|FAM189B_uc001fjo.2_Missense_Mutation_p.L125P|FAM189B_uc001fjp.2_Intron|FAM189B_uc001fjq.1_Missense_Mutation_p.L144P	NM_006589	NP_006580	P81408	F189B_HUMAN	hypothetical protein LOC10712 isoform a	144						integral to membrane	WW domain binding			ovary(1)|breast(1)	2						GGGCCGGAGGAGGGGAACAGA	0.607													26	76					0	0	1	0	0	
FDPS	2224	broad.mit.edu	37	1	155288068	155288068	+	Missense_Mutation	SNP	G	A	A	rs139546057		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:155288068G>A	uc001fkc.2	+	6	889	c.670G>A	c.(670-672)GAG>AAG	p.E224K	RAG1AP1_uc010pey.1_Intron|FDPS_uc001fkd.2_Missense_Mutation_p.E158K|FDPS_uc001fke.2_Missense_Mutation_p.E224K|FDPS_uc001fkf.2_Missense_Mutation_p.E158K|C1orf104_uc001fkh.1_RNA|RUSC1_uc001fkj.2_5'Flank|RUSC1_uc001fkk.2_5'Flank	NM_002004	NP_001995	P14324	FPPS_HUMAN	farnesyl diphosphate synthase isoform a	224					cholesterol biosynthetic process|interspecies interaction between organisms|isoprenoid biosynthetic process	cytosol|nucleus	dimethylallyltranstransferase activity|geranyltranstransferase activity|metal ion binding				0	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;2.03e-10)|all cancers(21;5.23e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)		Alendronate(DB00630)|Ibandronate(DB00710)|Pamidronate(DB00282)|Risedronate(DB00884)|Zoledronate(DB00399)	GAACCTGATCGAGCTCTTCCT	0.547													22	98					0	0	1	0	0	
ASH1L	55870	broad.mit.edu	37	1	155319149	155319149	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:155319149G>A	uc009wqq.2	-	19	8018	c.7538C>T	c.(7537-7539)GCT>GTT	p.A2513V	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.A2508V|MIR555_hsa-mir-555|MI0003561_5'Flank	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2513	Bromo.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			GAGCATGTCAGCATCAAAAGC	0.368													61	61					0	0	1	0	0	
ASH1L	55870	broad.mit.edu	37	1	155448772	155448772	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:155448772G>A	uc009wqq.2	-	3	4369	c.3889C>T	c.(3889-3891)CGC>TGC	p.R1297C	ASH1L_uc001fkt.2_Missense_Mutation_p.R1297C|ASH1L_uc009wqr.1_Missense_Mutation_p.R1297C	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	1297					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TCACTTAGGCGACTTATTAGT	0.393													131	106					0	0	1	0	0	
MEX3A	92312	broad.mit.edu	37	1	156047038	156047038	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156047038T>C	uc001fnd.3	-	2	890	c.890A>G	c.(889-891)GAG>GGG	p.E297G		NM_001093725	NP_001087194	A1L020	MEX3A_HUMAN	MEX3A protein	297						cytoplasmic mRNA processing body|nucleus	RNA binding|zinc ion binding				0	Hepatocellular(266;0.158)|all_neural(408;0.195)					ATTGTTGTACTCGAGGATCTT	0.662													20	70					0	0	1	0	0	
PAQR6	79957	broad.mit.edu	37	1	156214957	156214957	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156214957G>A	uc001fnu.1	-	6	655	c.585C>T	c.(583-585)TTC>TTT	p.F195F	PAQR6_uc010phf.1_Missense_Mutation_p.S62L|PAQR6_uc001fny.1_5'UTR|PAQR6_uc001fnv.1_Silent_p.F171F|PAQR6_uc010phg.1_Silent_p.F192F|PAQR6_uc001fnx.1_Silent_p.F89F|PAQR6_uc001fnw.1_Silent_p.F89F|PAQR6_uc001fnz.1_Silent_p.F89F|PAQR6_uc010phh.1_Silent_p.F195F|PAQR6_uc001foa.1_Silent_p.F89F|PAQR6_uc001fob.1_RNA	NM_198406	NP_940798	Q6TCH4	PAQR6_HUMAN	progestin and adipoQ receptor family member VI	195	Cytoplasmic (Potential).					integral to membrane	receptor activity				0	Hepatocellular(266;0.158)					GGAGGTTGTCGAACAGGAATG	0.607													22	96					0	0	1	0	0	
C1orf85	112770	broad.mit.edu	37	1	156263158	156263158	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156263158G>A	uc001foh.2	-	5	1021	c.1008C>T	c.(1006-1008)TTC>TTT	p.F336F	C1orf85_uc001fof.3_5'Flank|C1orf85_uc001fog.1_Intron|C1orf85_uc001foi.2_Silent_p.F287F|C1orf85_uc009wrx.2_Silent_p.F269F|C1orf85_uc001foj.2_Silent_p.F250F	NM_144580	NP_653181	Q8WWB7	NCUG1_HUMAN	kidney predominant protein NCU-G1 precursor	336	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter	cytosol|integral to membrane|lysosomal membrane|nucleus	ligand-dependent nuclear receptor activity|protein binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)	2	Hepatocellular(266;0.158)					TGGAAGCCCCGAACGTCAGAT	0.562													23	86					0	0	1	0	0	
CCT3	7203	broad.mit.edu	37	1	156279094	156279094	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156279094T>C	uc001fol.1	-	14	1754	c.1534A>G	c.(1534-1536)ACG>GCG	p.T512A	CCT3_uc001fom.1_Missense_Mutation_p.T511A|CCT3_uc001fon.1_Missense_Mutation_p.T474A|CCT3_uc010phj.1_Missense_Mutation_p.T466A|CCT3_uc010phk.1_Missense_Mutation_p.T466A|CCT3_uc010phl.1_Missense_Mutation_p.T466A	NM_005998	NP_005989	P49368	TCPG_HUMAN	chaperonin containing TCP1, subunit 3 isoform a	512					'de novo' posttranslational protein folding	cytoskeleton|cytosol|plasma membrane	ATP binding|unfolded protein binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					AGAACTGCCGTCTAGGAGAAA	0.493													62	51					0	0	1	0	0	
RHBG	57127	broad.mit.edu	37	1	156339125	156339125	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156339125C>A	uc010pho.1	+	1	123	c.85C>A	c.(85-87)CTC>ATC	p.L29I	RHBG_uc010phm.1_Missense_Mutation_p.L29I|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_5'UTR|RHBG_uc009wrz.2_5'UTR|RHBG_uc001for.2_5'UTR	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	29	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					CACTGCCGTCCTCTTTGCTGT	0.627													15	49					6.72482e-11	7.33162e-11	1	1	0	
C1orf61	10485	broad.mit.edu	37	1	156376906	156376906	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156376906G>T	uc001fou.1	-	6	506	c.389C>A	c.(388-390)TCT>TAT	p.S130Y	C1orf61_uc001fot.1_3'UTR|C1orf61_uc001fov.1_Intron|C1orf61_uc001fow.1_Intron|C1orf61_uc001fox.1_Intron	NM_006365	NP_006356	Q13536	CROC4_HUMAN	transcriptional activator of the c-fos promoter	130						nucleus				skin(1)	1	Hepatocellular(266;0.158)					aagagccaaagagctggtgct	0.129													19	57					1.67942e-08	1.78672e-08	1	1	0	
IQGAP3	128239	broad.mit.edu	37	1	156520055	156520055	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156520055C>A	uc001fpf.2	-	16	1898	c.1823G>T	c.(1822-1824)AGA>ATA	p.R608I		NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	608					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCATTTACTTCTCTGAGCTGT	0.592													25	23					5.35356e-11	5.83973e-11	1	1	0	
IQGAP3	128239	broad.mit.edu	37	1	156533432	156533432	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156533432C>T	uc001fpf.2	-	7	607	c.532G>A	c.(532-534)GAA>AAA	p.E178K	IQGAP3_uc009wsb.1_Missense_Mutation_p.E135K	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	178					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TTGGCCAGTTCGGACGCCATG	0.602													8	33					0	0	1	0	0	
BCAN	63827	broad.mit.edu	37	1	156616856	156616856	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156616856G>A	uc001fpp.2	+	3	691	c.355G>A	c.(355-357)GAC>AAC	p.D119N	BCAN_uc001fpo.2_Missense_Mutation_p.D119N	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	119	Ig-like V-type.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GTCGCTCACCGACGTCTCCCT	0.672													16	23					0	0	1	0	0	
BCAN	63827	broad.mit.edu	37	1	156616943	156616943	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156616943G>A	uc001fpp.2	+	3	778	c.442G>A	c.(442-444)GAC>AAC	p.D148N	BCAN_uc001fpo.2_Missense_Mutation_p.D148N	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	148	Ig-like V-type.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGACAGCAGCGACGCTGTGGA	0.532													13	32					0	0	1	0	0	
BCAN	63827	broad.mit.edu	37	1	156627954	156627954	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156627954C>T	uc001fpp.2	+	12	2664	c.2328C>T	c.(2326-2328)AGC>AGT	p.S776S		NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	776	C-type lectin.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGCCTGACAGCTACTTCCTGT	0.587											OREG0013880	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	75					0	0	1	0	0	
NES	10763	broad.mit.edu	37	1	156641598	156641598	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156641598C>A	uc001fpq.2	-	4	2515	c.2382G>T	c.(2380-2382)GAG>GAT	p.E794D		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	794	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GTCTAGCTATCTCCTGGTCAA	0.428													47	44					1.61863e-15	1.84754e-15	1	1	0	
C1orf66	51093	broad.mit.edu	37	1	156705540	156705540	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:156705540G>A	uc001fpu.2	+	7	1779	c.1145G>A	c.(1144-1146)CGA>CAA	p.R382Q	C1orf66_uc001fpv.2_Silent_p.A220A	NM_015997	NP_057081	Q96FB5	RRNAD_HUMAN	hypothetical protein LOC51093 isoform 1	382						integral to membrane	rRNA (adenine-N6,N6-)-dimethyltransferase activity				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGGCTACAGCGAGTGGGGCTA	0.547													29	88					0	0	1	0	0	
FCRL5	83416	broad.mit.edu	37	1	157514687	157514687	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:157514687G>A	uc001fqu.2	-	4	651	c.493C>T	c.(493-495)CGC>TGC	p.R165C	FCRL5_uc009wsm.2_Missense_Mutation_p.R165C|FCRL5_uc010phv.1_Missense_Mutation_p.R165C|FCRL5_uc010phw.1_Missense_Mutation_p.R80C|FCRL5_uc001fqv.1_Missense_Mutation_p.R165C|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	165	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CCAGTACAGCGATATGCACCA	0.368													128	99					0	0	1	0	0	
FCRL2	79368	broad.mit.edu	37	1	157719465	157719465	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:157719465C>A	uc001fre.2	-	8	1341	c.1282G>T	c.(1282-1284)GAA>TAA	p.E428*	FCRL2_uc001frd.2_Nonsense_Mutation_p.E175*|FCRL2_uc010phz.1_Nonsense_Mutation_p.E428*|FCRL2_uc009wsp.2_Nonsense_Mutation_p.E144*	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	428	Cytoplasmic (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GCAGAACTTTCTCCTGAAATG	0.328													22	59					5.45024e-15	6.18484e-15	1	1	0	
FCRL2	79368	broad.mit.edu	37	1	157740375	157740375	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:157740375T>G	uc001fre.2	-	3	193	c.134A>C	c.(133-135)AAA>ACA	p.K45T	FCRL2_uc001frd.2_5'Flank|FCRL2_uc010phz.1_Missense_Mutation_p.K45T|FCRL2_uc009wsp.2_Missense_Mutation_p.K45T|FCRL2_uc010pia.1_Missense_Mutation_p.K45T	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	45	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CTTCTGAATTTTCCAGTTCTG	0.428													7	81					0	0	1	0	0	
FCRL1	115350	broad.mit.edu	37	1	157767670	157767670	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:157767670C>T	uc001frg.2	-	9	1287	c.1174G>A	c.(1174-1176)GAA>AAA	p.E392K	FCRL1_uc001frf.2_Intron|FCRL1_uc001frh.2_Missense_Mutation_p.E392K|FCRL1_uc001fri.2_Intron|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	392	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GCTACTGATTCCTGCTCCGGC	0.483													58	53					0	0	1	0	0	
CD1D	912	broad.mit.edu	37	1	158151317	158151317	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158151317A>G	uc001frr.2	+	3	633	c.134A>G	c.(133-135)GAC>GGC	p.D45G	CD1D_uc009wsr.1_Missense_Mutation_p.D45G|CD1D_uc009wss.2_Missense_Mutation_p.D45G|CD1D_uc009wst.1_5'UTR	NM_001766	NP_001757	P15813	CD1D_HUMAN	CD1D antigen precursor	45	Extracellular (Potential).				antigen processing and presentation, endogenous lipid antigen via MHC class Ib|detection of bacterium|innate immune response|interspecies interaction between organisms|positive regulation of innate immune response|T cell selection	endosome membrane|integral to plasma membrane|lysosomal membrane	beta-2-microglobulin binding|exogenous lipid antigen binding|histone binding			ovary(1)	1	all_hematologic(112;0.0378)					ACGCGCACCGACGGCTTGGCG	0.637													69	236					0	0	1	0	0	
CD1B	910	broad.mit.edu	37	1	158299693	158299693	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158299693G>A	uc001frx.2	-	3	664	c.556C>T	c.(556-558)CGA>TGA	p.R186*	CD1B_uc001frw.2_Nonsense_Mutation_p.R79*	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	186	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					AAGAGATATCGGGGGCAGGTT	0.463													139	112					0	0	1	0	0	
OR6Y1	391112	broad.mit.edu	37	1	158517116	158517116	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158517116T>G	uc010pil.1	-	1	780	c.780A>C	c.(778-780)ACA>ACC	p.T260T		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	260	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AGGTGAAAAGTGTCATGGAAT	0.498													38	124					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158592868	158592868	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158592868G>A	uc001fst.1	-	43	6224	c.6025C>T	c.(6025-6027)CGT>TGT	p.R2009C		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2009	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCGGCATAACGCTCTTCAATG	0.502													108	489					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158606495	158606495	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158606495T>G	uc001fst.1	-	37	5445	c.5246A>C	c.(5245-5247)CAG>CCG	p.Q1749P		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1749	Spectrin 17.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CAGCAAGTTCTGAACCCCCTG	0.428													121	116					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158621249	158621249	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158621249T>C	uc001fst.1	-	24	3584	c.3385A>G	c.(3385-3387)ACC>GCC	p.T1129A		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1129	Spectrin 11.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGCTCATTGGTATTCAAATCC	0.413													48	146					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158623098	158623098	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158623098T>G	uc001fst.1	-	22	3353	c.3154A>C	c.(3154-3156)AAC>CAC	p.N1052H		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1052					actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGGGTGATGTTTCCTGGCTCT	0.522													83	97					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158623119	158623119	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158623119G>A	uc001fst.1	-	22	3332	c.3133C>T	c.(3133-3135)CGG>TGG	p.R1045W		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1045					actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCTCGTCGCCGCTGTGGGAGC	0.542													44	105					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158639264	158639264	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158639264C>A	uc001fst.1	-	14	1966	c.1767G>T	c.(1765-1767)GAG>GAT	p.E589D		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	589	Spectrin 7.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CATCTGAGTCCTCATACAGTT	0.453													67	305					3.13765e-25	3.78106e-25	1	1	0	
OR6K2	81448	broad.mit.edu	37	1	158669933	158669933	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158669933C>T	uc001fsu.1	-	1	510	c.510G>A	c.(508-510)TCG>TCA	p.S170S		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					CAAGGTGATTCGAACCACAAA	0.483													57	71					0	0	1	0	0	
OR6K3	391114	broad.mit.edu	37	1	158687804	158687804	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158687804G>T	uc010pip.1	-	1	150	c.150C>A	c.(148-150)ATC>ATA	p.I50I		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	50	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					TAAAAGTATAGATGAAAAGTA	0.373													41	163					1.49673e-21	1.77673e-21	1	1	0	
OR6K6	128371	broad.mit.edu	37	1	158725631	158725631	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158725631G>A	uc001fsw.1	+	1	1026	c.1026G>A	c.(1024-1026)GGG>GGA	p.G342G		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	342	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					GTTGGGCTGGGAAATAGATAC	0.418													16	76					0	0	1	0	0	
OR6N2	81442	broad.mit.edu	37	1	158746725	158746725	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158746725C>A	uc010pir.1	-	1	701	c.701G>T	c.(700-702)AGA>ATA	p.R234I		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					GGCCTTCTTTCTTCCTGATGC	0.408													25	63					3.08376e-08	3.26638e-08	1	1	0	
OR6N2	81442	broad.mit.edu	37	1	158746739	158746739	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158746739T>G	uc010pir.1	-	1	687	c.687A>C	c.(685-687)AAA>AAC	p.K229N		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					CTGATGCTGTTTTTATCTTCA	0.408													14	83					0	0	1	0	0	
MNDA	4332	broad.mit.edu	37	1	158815580	158815580	+	Missense_Mutation	SNP	G	T	T	rs144094005		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158815580G>T	uc001fsz.1	+	5	974	c.774G>T	c.(772-774)GAG>GAT	p.E258D		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	258	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					ACTTGAAAGAGAAATTTGTAA	0.368													47	57					4.14194e-30	5.06051e-30	1	1	0	
MNDA	4332	broad.mit.edu	37	1	158817600	158817600	+	Missense_Mutation	SNP	A	G	G	rs111691948		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158817600A>G	uc001fsz.1	+	6	1270	c.1070A>G	c.(1069-1071)CAC>CGC	p.H357R		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	357	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					GGAAAATGGCACAATATCAAG	0.413													35	123					0	0	1	0	0	
MNDA	4332	broad.mit.edu	37	1	158819009	158819009	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:158819009A>G	uc001fsz.1	+	7	1406	c.1206A>G	c.(1204-1206)GGA>GGG	p.G402G		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	402					B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					ACAAGGAAGGACCAATGAATG	0.318													12	70					0	0	1	0	0	
AIM2	9447	broad.mit.edu	37	1	159043205	159043205	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:159043205G>T	uc001ftj.1	-	2	330	c.85C>A	c.(85-87)CTT>ATT	p.L29I		NM_004833	NP_004824	O14862	AIM2_HUMAN	absent in melanoma 2	29	DAPIN.				cellular response to drug|immune response|interleukin-1 beta secretion	mitochondrion|nucleus				ovary(2)|pancreas(1)	3	all_hematologic(112;0.0429)					TCGTCTGAAAGAAAGAACTTA	0.413													78	84					4.59617e-45	5.71001e-45	1	1	0	
CADM3	57863	broad.mit.edu	37	1	159162412	159162412	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:159162412G>A	uc001ftl.2	+	3	416	c.274G>A	c.(274-276)GAG>AAG	p.E92K	CADM3_uc009wsx.1_Missense_Mutation_p.E126K|CADM3_uc009wsy.1_Missense_Mutation_p.E92K|CADM3_uc001ftk.2_Missense_Mutation_p.E126K	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	92	Ig-like V-type.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					TACGCCCCACGAGCTCAGCAT	0.517													22	96					0	0	1	0	0	
DARC	2532	broad.mit.edu	37	1	159176026	159176026	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:159176026T>G	uc001fto.2	+	2	1037	c.797T>G	c.(796-798)GTG>GGG	p.V266G	DARC_uc001ftp.3_Missense_Mutation_p.V268G	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	266	Extracellular (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					GATTTCCTGGTGAGGTCCAAG	0.557													50	164					0	0	1	0	0	
CRP	1401	broad.mit.edu	37	1	159683518	159683518	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:159683518C>A	uc001ftw.2	-	2	576	c.472G>T	c.(472-474)GAT>TAT	p.D158Y	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	158	Pentaxin.	Calcium 2.|Calcium 1.			acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	CCGAAGGAATCCTGCTCCTGC	0.527													155	407					2.32739e-80	2.90818e-80	1	1	0	
FCRL6	343413	broad.mit.edu	37	1	159778115	159778115	+	Missense_Mutation	SNP	C	T	T	rs150017462		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:159778115C>T	uc001fud.3	+	3	242	c.200C>T	c.(199-201)ACT>ATT	p.T67I	FCRL6_uc010pix.1_Missense_Mutation_p.T62I|FCRL6_uc001fuc.2_Missense_Mutation_p.T74I|FCRL6_uc009wsz.1_Missense_Mutation_p.T67I|FCRL6_uc009wta.2_Missense_Mutation_p.T67I	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	67	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GAAAACCAGACTCTGTCCATG	0.488													39	36					0	0	1	0	0	
FCRL6	343413	broad.mit.edu	37	1	159778757	159778757	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:159778757T>G	uc001fud.3	+	4	368	c.326T>G	c.(325-327)TTT>TGT	p.F109C	FCRL6_uc010pix.1_3'UTR|FCRL6_uc001fuc.2_Missense_Mutation_p.F116C|FCRL6_uc009wsz.1_Intron|FCRL6_uc009wta.2_Missense_Mutation_p.F109C	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	109	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					CCAGAGCTGTTTCCACCTCCT	0.617													28	53					0	0	1	0	0	
CCDC19	25790	broad.mit.edu	37	1	159846352	159846352	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:159846352A>C	uc001fui.2	-	10	1364	c.1346T>G	c.(1345-1347)ATT>AGT	p.I449S	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.I364S|CCDC19_uc001ful.2_Missense_Mutation_p.I364S|CCDC19_uc009wtc.1_3'UTR	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	449	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			CTACCGAAGAATCCTCTCGAA	0.532													15	36					0	0	1	0	0	
CCDC19	25790	broad.mit.edu	37	1	159846428	159846428	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:159846428G>A	uc001fui.2	-	10	1288	c.1270C>T	c.(1270-1272)CGG>TGG	p.R424W	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.R339W|CCDC19_uc001ful.2_Missense_Mutation_p.R339W|CCDC19_uc009wtc.1_3'UTR	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	424	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			TGTTCGAGCCGACTTTTTCGC	0.567													19	42					0	0	1	0	0	
SLAMF9	89886	broad.mit.edu	37	1	159922090	159922090	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:159922090A>G	uc001fus.2	-	3	743	c.626T>C	c.(625-627)GTC>GCC	p.V209A	SLAMF9_uc009wtd.2_Intron|SLAMF9_uc001fut.2_Intron	NM_033438	NP_254273	Q96A28	SLAF9_HUMAN	SLAM family member 9 isoform 1	209	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GCAAGAACTGACGTTGCTGAT	0.567													31	120					0	0	1	0	0	
ATP1A2	477	broad.mit.edu	37	1	160097591	160097591	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160097591G>A	uc001fvc.2	+	8	1130	c.998G>A	c.(997-999)GGG>GAG	p.G333E	ATP1A2_uc001fvb.2_Missense_Mutation_p.G333E|ATP1A2_uc010piz.1_Missense_Mutation_p.G178E|ATP1A2_uc001fvd.2_Missense_Mutation_p.G69E|ATP1A2_uc009wtg.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	333	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GTGCCTGAGGGGCTTCTGGCC	0.582													86	49					0	0	1	0	0	
ATP1A2	477	broad.mit.edu	37	1	160099926	160099926	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160099926G>T	uc001fvc.2	+	12	1628	c.1496G>T	c.(1495-1497)AGC>ATC	p.S499I	ATP1A2_uc001fvb.2_Missense_Mutation_p.S499I|ATP1A2_uc001fvd.2_Missense_Mutation_p.S235I|ATP1A2_uc009wtg.1_Missense_Mutation_p.S187I	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	499	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			AGCCCCCAGAGCCACGTGCTG	0.592													26	118					6.32553e-13	7.03772e-13	1	1	0	
ATP1A4	480	broad.mit.edu	37	1	160125849	160125849	+	Silent	SNP	C	T	T	rs141961417		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160125849C>T	uc001fve.3	+	4	905	c.426C>T	c.(424-426)ATC>ATT	p.I142I	ATP1A4_uc001fvf.3_RNA	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	142	Helical; (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ACCTGAGCATCGTACTGTCCG	0.512													24	68					0	0	1	0	0	
CASQ1	844	broad.mit.edu	37	1	160160780	160160780	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160160780C>T	uc010pja.1	+	1	496	c.239C>T	c.(238-240)GCC>GTC	p.A80V		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	80						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GATGACAAGGCCTCACAAAGA	0.522													23	49					0	0	1	0	0	
PEX19	5824	broad.mit.edu	37	1	160252819	160252819	+	Silent	SNP	G	A	A	rs146644725	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160252819G>A	uc001fvs.2	-	3	288	c.261C>T	c.(259-261)TTC>TTT	p.F87F	DCAF8_uc010pjc.1_5'UTR|PEX19_uc010pje.1_RNA|PEX19_uc001fvt.2_5'UTR	NM_002857	NP_002848	P40855	PEX19_HUMAN	peroxisomal biogenesis factor 19 isoform a	87	Necessary for PEX19 function on peroxisome biogenesis.				peroxisome membrane biogenesis|peroxisome organization|protein targeting to peroxisome|transmembrane transport	brush border membrane|cytosol|integral to membrane|nucleus|peroxisomal membrane	protein binding|protein N-terminus binding				0	all_cancers(52;1.27e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TTGCCTTCTCGAACTCCGCAG	0.567													23	71					0	0	1	0	0	
COPA	1314	broad.mit.edu	37	1	160268902	160268902	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160268902T>G	uc009wti.2	-	18	2214	c.1820A>C	c.(1819-1821)AAA>ACA	p.K607T	COPA_uc001fvv.3_Missense_Mutation_p.K616T	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	607					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CTCATCATATTTTCTGTTGAT	0.438													52	165					0	0	1	0	0	
CD84	8832	broad.mit.edu	37	1	160523839	160523839	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160523839C>A	uc001fwh.3	-	3	510	c.486G>T	c.(484-486)AAG>AAT	p.K162N	CD84_uc001fwf.3_Missense_Mutation_p.K162N|CD84_uc001fwg.3_Missense_Mutation_p.K162N|CD84_uc009wtn.2_Missense_Mutation_p.K162N|CD84_uc001fwi.3_Missense_Mutation_p.K48N|CD84_uc001fwj.2_Missense_Mutation_p.K162N|CD84_uc001fwk.2_Missense_Mutation_p.K162N	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	162	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			ATGTCACATTCTTTTCTTCTT	0.458													30	83					2.61193e-14	2.9448e-14	1	1	0	
SLAMF1	6504	broad.mit.edu	37	1	160604606	160604606	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160604606A>G	uc001fwl.3	-	3	843	c.497T>C	c.(496-498)GTG>GCG	p.V166A	SLAMF1_uc010pjk.1_RNA|SLAMF1_uc010pjl.1_RNA|SLAMF1_uc010pjm.1_RNA	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	166	Ig-like C2-type.|Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CCCCTTCTCCACTGTGCAGCC	0.572													22	105					0	0	1	0	0	
SLAMF1	6504	broad.mit.edu	37	1	160604614	160604614	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160604614G>A	uc001fwl.3	-	3	835	c.489C>T	c.(487-489)GGC>GGT	p.G163G	SLAMF1_uc010pjk.1_RNA|SLAMF1_uc010pjl.1_RNA|SLAMF1_uc010pjm.1_RNA	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	163	Ig-like C2-type.|Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CCACTGTGCAGCCCAGTATCA	0.567													47	82					0	0	1	0	0	
SLAMF7	57823	broad.mit.edu	37	1	160720183	160720183	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160720183C>A	uc001fwq.2	+	4	754	c.739C>A	c.(739-741)CTT>ATT	p.L247I	SLAMF7_uc010pjn.1_Missense_Mutation_p.L153I|SLAMF7_uc001fws.2_Missense_Mutation_p.L140I|SLAMF7_uc001fwr.2_Missense_Mutation_p.L247I|SLAMF7_uc010pjo.1_Intron|SLAMF7_uc010pjp.1_Intron|SLAMF7_uc010pjq.1_Intron|SLAMF7_uc010pjr.1_Intron	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	247	Helical; (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GGGGCTATTTCTTTGGTTTCT	0.428													54	239					1.59911e-31	1.9596e-31	1	1	0	
LY9	4063	broad.mit.edu	37	1	160793289	160793289	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160793289C>A	uc001fwu.2	+	8	1583	c.1533C>A	c.(1531-1533)CTC>CTA	p.L511L	LY9_uc001fwv.2_Intron|LY9_uc001fww.2_Silent_p.L421L|LY9_uc001fwx.2_Silent_p.L421L|LY9_uc001fwy.1_Intron|LY9_uc001fwz.2_Intron	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	511	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			ACTCTGTGCTCTCCCAAGGAT	0.547													21	51					5.26018e-13	5.86357e-13	1	1	0	
CD244	51744	broad.mit.edu	37	1	160811101	160811101	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160811101T>C	uc009wtq.2	-	3	747	c.569A>G	c.(568-570)GAC>GGC	p.D190G	CD244_uc001fxa.2_Missense_Mutation_p.D185G|CD244_uc009wtp.2_RNA|CD244_uc009wtr.2_Intron|CD244_uc010pjt.1_RNA	NM_016382	NP_057466	Q9BZW8	CD244_HUMAN	CD244 natural killer cell receptor 2B4	190	Extracellular (Potential).|Ig-like 2.				blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GCCATTAATGTCAACCTCCTC	0.517													99	105					0	0	1	0	0	
F11R	50848	broad.mit.edu	37	1	160968840	160968840	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:160968840C>T	uc009wtt.2	-	9	1127	c.857G>A	c.(856-858)CGA>CAA	p.R286Q	F11R_uc010pjv.1_Missense_Mutation_p.R237Q|F11R_uc001fxe.3_Missense_Mutation_p.R283Q|F11R_uc009wtu.2_Intron|F11R_uc010pjw.1_Missense_Mutation_p.R290Q|F11R_uc001fxf.3_Missense_Mutation_p.R286Q	NM_016946	NP_058642	Q9Y624	JAM1_HUMAN	F11 receptor precursor	286	Cytoplasmic (Potential).				blood coagulation|inflammatory response|interspecies interaction between organisms|leukocyte migration|tight junction assembly	integral to membrane|tight junction				ovary(2)	2	all_cancers(52;6.73e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00207)			CACTTCACTTCGGGCACTAGG	0.527													45	35					0	0	1	0	0	
ARHGAP30	257106	broad.mit.edu	37	1	161017765	161017765	+	Missense_Mutation	SNP	G	A	A	rs140478074	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:161017765G>A	uc001fxl.2	-	12	3392	c.3046C>T	c.(3046-3048)CGG>TGG	p.R1016W	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Missense_Mutation_p.R805W|ARHGAP30_uc001fxm.2_Missense_Mutation_p.R862W|ARHGAP30_uc009wtx.2_Missense_Mutation_p.R689W	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	1016					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			TGGGTTCGCCGAACTCCTTGA	0.587													33	82					0	0	1	0	0	
ARHGAP30	257106	broad.mit.edu	37	1	161022287	161022287	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:161022287A>C	uc001fxl.2	-	8	1229	c.883T>G	c.(883-885)TTA>GTA	p.L295V	ARHGAP30_uc001fxk.2_Missense_Mutation_p.L295V|ARHGAP30_uc001fxm.2_Missense_Mutation_p.L141V|ARHGAP30_uc009wtx.2_Translation_Start_Site|ARHGAP30_uc001fxn.1_Missense_Mutation_p.L141V	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	295					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GAGCGACCTAAATTGAAGATA	0.542													19	319					0	0	1	0	0	
ARHGAP30	257106	broad.mit.edu	37	1	161029440	161029440	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:161029440C>T	uc001fxl.2	-	2	510	c.164G>A	c.(163-165)CGC>CAC	p.R55H	ARHGAP30_uc001fxk.2_Missense_Mutation_p.R55H|ARHGAP30_uc001fxm.2_5'UTR|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_5'UTR	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	55	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CCCTGAGAGGCGGTAGATCCC	0.562													40	41					0	0	1	0	0	
PVRL4	81607	broad.mit.edu	37	1	161044462	161044462	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:161044462G>A	uc001fxo.2	-	5	1238	c.939C>T	c.(937-939)TAC>TAT	p.Y313Y	PVRL4_uc010pjy.1_5'Flank|PVRL4_uc010pjz.1_Silent_p.Y47Y	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	313	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CATGGCAGACGTAGATGCCGC	0.572													16	70					0	0	1	0	0	
APOA2	336	broad.mit.edu	37	1	161193167	161193167	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:161193167G>A	uc001fzc.1	-	2	83	c.25C>T	c.(25-27)CTA>TTA	p.L9L	APOA2_uc001fzb.1_RNA|TOMM40L_uc010pkk.1_5'Flank|TOMM40L_uc010pkl.1_5'Flank|TOMM40L_uc001fzd.2_5'Flank|TOMM40L_uc009wue.2_5'Flank|TOMM40L_uc009wuf.1_5'Flank|TOMM40L_uc001fze.2_5'Flank	NM_001643	NP_001634	P02652	APOA2_HUMAN	apolipoprotein A-II preproprotein	9					cholesterol efflux|cholesterol homeostasis|diacylglycerol catabolic process|high-density lipoprotein particle assembly|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|interspecies interaction between organisms|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol import|negative regulation of cholesterol transporter activity|negative regulation of cytokine secretion involved in immune response|negative regulation of lipase activity|negative regulation of lipid catabolic process|negative regulation of very-low-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|phospholipid catabolic process|phospholipid efflux|positive regulation of cholesterol esterification|positive regulation of interleukin-8 biosynthetic process|positive regulation of lipid catabolic process|protein folding|regulation of protein stability|response to glucose stimulus|reverse cholesterol transport|triglyceride metabolic process|triglyceride-rich lipoprotein particle remodeling	chylomicron|endoplasmic reticulum lumen|spherical high-density lipoprotein particle|very-low-density lipoprotein particle	apolipoprotein receptor binding|cholesterol binding|high-density lipoprotein particle receptor binding|lipase inhibitor activity|phosphatidylcholine binding|phosphatidylcholine-sterol O-acyltransferase activator activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GTGAGGAGTAGCACAGTTGCT	0.562													9	42					0	0	1	0	0	
FCGR3A	2214	broad.mit.edu	37	1	161512836	161512836	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:161512836T>G	uc001gat.3	-	6	868	c.731A>C	c.(730-732)AAA>ACA	p.K244T	FCGR3A_uc001gar.2_Missense_Mutation_p.K280T|FCGR3A_uc001gas.2_Missense_Mutation_p.K279T|FCGR3A_uc009wuh.2_Missense_Mutation_p.K243T|FCGR3A_uc009wui.2_Missense_Mutation_p.K244T	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	244	Cytoplasmic (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCATTTAAATTTATGGTCCTT	0.438													56	132					0	0	1	0	0	
FCGR3A	2214	broad.mit.edu	37	1	161518349	161518349	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:161518349A>C	uc001gat.3	-	4	318	c.181T>G	c.(181-183)TTT>GTT	p.F61V	FCGR3A_uc001gar.2_Missense_Mutation_p.F97V|FCGR3A_uc001gas.2_Missense_Mutation_p.F96V|FCGR3A_uc009wuh.2_Missense_Mutation_p.F60V|FCGR3A_uc009wui.2_Missense_Mutation_p.F61V	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	61	Ig-like C2-type 1.|Extracellular (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TCATTGTGAAACCACTGTGTG	0.552													26	462					0	0	1	0	0	
FCGR2C	9103	broad.mit.edu	37	1	161559538	161559538	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:161559538A>G	uc001gav.2	+	4	419	c.320A>G	c.(319-321)GAC>GGC	p.D107G	FCGR2C_uc009wuj.2_RNA|FCGR2C_uc009wuk.2_RNA	NM_201563	NP_963857			Fc fragment of IgG, low affinity IIc, receptor												0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			AACAACAATGACAGCGGGGAG	0.592													26	94					0	0	1	0	0	
NOS1AP	9722	broad.mit.edu	37	1	162270424	162270424	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:162270424T>G	uc001gbv.2	+	4	659	c.272T>G	c.(271-273)CTT>CGT	p.L91R	NOS1AP_uc010pkr.1_Intron|NOS1AP_uc010pks.1_Intron|NOS1AP_uc001gbw.2_Intron	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	91	PID.				regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			CATTTACAGCTTCTTTTATTG	0.468													36	125					0	0	1	0	0	
UAP1	6675	broad.mit.edu	37	1	162551117	162551117	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:162551117T>C	uc001gce.3	+	5	1031	c.702T>C	c.(700-702)AAT>AAC	p.N234N		NM_003115	NP_003106	Q16222	UAP1_HUMAN	UDP-N-acetylglucosamine pyrophosphorylase 1	234					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol|nucleus|plasma membrane	UDP-N-acetylglucosamine diphosphorylase activity			ovary(2)|skin(2)|kidney(1)	5	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			CAGCCCAGAATATTGTGGAGG	0.403													64	238					0	0	1	0	0	
UAP1	6675	broad.mit.edu	37	1	162560241	162560241	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:162560241T>C	uc001gce.3	+	8	1627	c.1298T>C	c.(1297-1299)GTC>GCC	p.V433A		NM_003115	NP_003106	Q16222	UAP1_HUMAN	UDP-N-acetylglucosamine pyrophosphorylase 1	433					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol|nucleus|plasma membrane	UDP-N-acetylglucosamine diphosphorylase activity			ovary(2)|skin(2)|kidney(1)	5	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			CATTGCTGGGTCCTCAATGCA	0.443													8	122					0	0	1	0	0	
NUF2	83540	broad.mit.edu	37	1	163317623	163317623	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:163317623C>T	uc001gcq.1	+	12	1319	c.1019C>T	c.(1018-1020)TCG>TTG	p.S340L	NUF2_uc001gcr.1_Missense_Mutation_p.S340L|NUF2_uc009wvc.1_Missense_Mutation_p.S293L	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	340	Interaction with the N-terminus of NDC80.|Potential.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					GAAGAAAATTCGTTCAAAAGA	0.338													18	54					0	0	1	0	0	
PBX1	5087	broad.mit.edu	37	1	164815832	164815832	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:164815832T>G	uc001gct.2	+	9	1470	c.1212T>G	c.(1210-1212)GGT>GGG	p.G404G	PBX1_uc010pku.1_Intron|PBX1_uc010pkv.1_Silent_p.G321G|PBX1_uc001gcs.2_3'UTR|PBX1_uc010pkw.1_Intron	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	404					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						CTAATGGAGGTTGGCAGGATG	0.463			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								19	117					0	0	1	0	0	
LMX1A	4009	broad.mit.edu	37	1	165182951	165182951	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:165182951C>T	uc001gcy.1	-	4	817	c.596G>A	c.(595-597)AGA>AAA	p.R199K	LMX1A_uc001gcz.1_Missense_Mutation_p.R199K|LMX1A_uc001gcw.1_5'Flank|LMX1A_uc001gcx.1_5'Flank	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	199	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CAAGATGGTTCTCGGACGTTT	0.522													108	115					0	0	1	0	0	
ALDH9A1	223	broad.mit.edu	37	1	165638645	165638645	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:165638645G>T	uc001gdh.1	-	7	1078	c.973C>A	c.(973-975)CTT>ATT	p.L325I	ALDH9A1_uc010pky.1_Missense_Mutation_p.L231I|ALDH9A1_uc010pkz.1_Missense_Mutation_p.L315I|ALDH9A1_uc010pla.1_Missense_Mutation_p.L231I	NM_000696	NP_000687	P49189	AL9A1_HUMAN	aldehyde dehydrogenase 9A1	301					carnitine biosynthetic process|cellular aldehyde metabolic process|hormone metabolic process|neurotransmitter biosynthetic process	cytosol|plasma membrane	3-chloroallyl aldehyde dehydrogenase activity|4-trimethylammoniobutyraldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aminobutyraldehyde dehydrogenase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				NADH(DB00157)	AATTTATCAAGAATTTCTTTC	0.393													15	76					8.60227e-14	9.65208e-14	1	1	0	
ALDH9A1	223	broad.mit.edu	37	1	165664630	165664630	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:165664630T>G	uc001gdh.1	-	2	291	c.186A>C	c.(184-186)CGA>CGC	p.R62R	ALDH9A1_uc010pky.1_5'UTR|ALDH9A1_uc010pkz.1_Silent_p.R52R|ALDH9A1_uc010pla.1_5'UTR	NM_000696	NP_000687	P49189	AL9A1_HUMAN	aldehyde dehydrogenase 9A1	38					carnitine biosynthetic process|cellular aldehyde metabolic process|hormone metabolic process|neurotransmitter biosynthetic process	cytosol|plasma membrane	3-chloroallyl aldehyde dehydrogenase activity|4-trimethylammoniobutyraldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aminobutyraldehyde dehydrogenase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				NADH(DB00157)	TAGCTATCACTCGGCCTATAA	0.323													32	102					0	0	1	0	0	
MAEL	84944	broad.mit.edu	37	1	166973498	166973498	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:166973498T>G	uc001gdy.1	+	6	676	c.605T>G	c.(604-606)TTT>TGT	p.F202C	MAEL_uc001gdz.1_Missense_Mutation_p.F171C|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	202					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						CTTTATAGATTTATTCATCCC	0.363													83	61					0	0	1	0	0	
DUSP27	92235	broad.mit.edu	37	1	167097037	167097037	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:167097037A>G	uc001geb.1	+	5	2669	c.2669A>G	c.(2668-2670)GAC>GGC	p.D890G		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	890					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GAGGACACTGACAGTGCCATA	0.502													24	52					0	0	1	0	0	
CD247	919	broad.mit.edu	37	1	167408594	167408594	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:167408594T>C	uc001gei.3	-	3	351	c.206A>G	c.(205-207)AAC>AGC	p.N69S	CD247_uc001gej.3_Missense_Mutation_p.N69S|CD247_uc001gek.2_Missense_Mutation_p.N69S	NM_198053	NP_932170	P20963	CD3Z_HUMAN	T-cell receptor zeta chain isoform 1 precursor	69	Cytoplasmic (Potential).|ITAM 1.				interspecies interaction between organisms|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytoplasm|integral to membrane	protein homodimerization activity|transmembrane receptor activity				0			LUSC - Lung squamous cell carcinoma(543;0.236)			ATAGAGCTGGTTCTGGCCCTG	0.602													43	55					0	0	1	0	0	
DCAF6	55827	broad.mit.edu	37	1	167921046	167921046	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:167921046G>A	uc001gew.2	+	2	348	c.106G>A	c.(106-108)GAA>AAA	p.E36K	DCAF6_uc001gev.2_Missense_Mutation_p.E36K|DCAF6_uc001gex.2_Missense_Mutation_p.E36K|DCAF6_uc010plk.1_Missense_Mutation_p.E36K	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	36					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGGAAGAAGAGAATTTATCCA	0.249													15	62					0	0	1	0	0	
DCAF6	55827	broad.mit.edu	37	1	168037606	168037606	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:168037606G>A	uc001gew.2	+	18	2665	c.2423G>A	c.(2422-2424)CGA>CAA	p.R808Q	DCAF6_uc001gev.2_Missense_Mutation_p.R828Q|DCAF6_uc001gex.2_Missense_Mutation_p.R899Q|DCAF6_uc010plk.1_Missense_Mutation_p.R868Q|DCAF6_uc001gey.2_Missense_Mutation_p.R681Q|DCAF6_uc001gez.2_Missense_Mutation_p.R111Q	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	808					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GTTATAACTCGAAACGAACTC	0.388													16	51					0	0	1	0	0	
SFT2D2	375035	broad.mit.edu	37	1	168208388	168208388	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:168208388C>T	uc001gfi.3	+	7	496	c.433C>T	c.(433-435)CCA>TCA	p.P145S	TBX19_uc001gfj.3_Intron	NM_199344	NP_955376	O95562	SFT2B_HUMAN	SFT2 domain containing 2	145	Cytoplasmic (Potential).				protein transport|vesicle-mediated transport	integral to membrane				skin(1)	1	all_hematologic(923;0.215)					TTCCTTCATACCATTTGCAAG	0.353													80	93					0	0	1	0	0	
ATP1B1	481	broad.mit.edu	37	1	169080737	169080737	+	Splice_Site	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:169080737G>A	uc001gfs.1	+	2		c.347_splice	c.e2+1					P05026	AT1B1_HUMAN	Synthetic construct DNA, clone: pF1KB8186, Homo sapiens ATP1B1 gene for ATPase, Na+/K+ transporting, beta 1 polypeptide, without stop codon, in Flexi system.						ATP biosynthetic process|blood coagulation|leukocyte migration	sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	all_hematologic(923;0.208)					GCCCCGCCAGGTAAAATCCAC	0.433													18	71					0	0	1	0	0	
ATP1B1	481	broad.mit.edu	37	1	169101455	169101455	+	RNA	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:169101455A>C	uc001gfs.1	+	6		c.1699A>C						P05026	AT1B1_HUMAN	Synthetic construct DNA, clone: pF1KB8186, Homo sapiens ATP1B1 gene for ATPase, Na+/K+ transporting, beta 1 polypeptide, without stop codon, in Flexi system.						ATP biosynthetic process|blood coagulation|leukocyte migration	sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	all_hematologic(923;0.208)					AAAACACAAAAAGGTGATGGG	0.428													4	18					0	0	1	0	0	
NME7	29922	broad.mit.edu	37	1	169292429	169292429	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:169292429G>T	uc001gfu.2	-	3	442	c.204C>A	c.(202-204)GTC>GTA	p.V68V	NME7_uc010plq.1_RNA|NME7_uc001gft.2_Silent_p.V32V|NME7_uc001gfv.1_Silent_p.V68V	NM_013330	NP_037462	Q9Y5B8	NDK7_HUMAN	nucleoside diphosphate kinase 7 isoform a	68	DM10.				CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	centrosome	ATP binding|metal ion binding|nucleoside diphosphate kinase activity			central_nervous_system(1)	1	all_hematologic(923;0.208)					GTCGAGAAAAGACATTCACTT	0.358													41	158					3.76604e-16	4.31307e-16	1	1	0	
F5	2153	broad.mit.edu	37	1	169509977	169509977	+	Missense_Mutation	SNP	G	A	A	rs35866019		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:169509977G>A	uc001ggg.1	-	13	4496	c.4351C>T	c.(4351-4353)CTC>TTC	p.L1451F		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1451	2-30.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	ATCTGGCTGAGATCCGGGAGA	0.468													65	69					0	0	1	0	0	
F5	2153	broad.mit.edu	37	1	169521904	169521904	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:169521904T>C	uc001ggg.1	-	8	1332	c.1187A>G	c.(1186-1188)TAC>TGC	p.Y396C	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	396	F5/8 type A 2.|Plastocyanin-like 3.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GTACTGTGTGTACATAACTTT	0.348													29	152					0	0	1	0	0	
C1orf112	55732	broad.mit.edu	37	1	169771777	169771777	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:169771777G>A	uc001ggp.2	+	5	392	c.82G>A	c.(82-84)GAT>AAT	p.D28N	C1orf112_uc001ggj.2_RNA|C1orf112_uc001ggo.2_Missense_Mutation_p.D28N|C1orf112_uc001ggq.2_Missense_Mutation_p.D28N|C1orf112_uc009wvt.2_5'UTR|C1orf112_uc010plu.1_5'UTR|C1orf112_uc009wvu.1_5'UTR|C1orf112_uc001ggr.2_5'UTR|C1orf112_uc010plv.1_5'Flank	NM_018186	NP_060656	Q9NSG2	CA112_HUMAN	hypothetical protein LOC55732	28											0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GAAATTATTCGATGACATGAT	0.323													18	53					0	0	1	0	0	
SCYL3	57147	broad.mit.edu	37	1	169823858	169823858	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:169823858C>T	uc001ggs.2	-	13	1920	c.1722G>A	c.(1720-1722)GAG>GAA	p.E574E	SCYL3_uc010plw.1_Silent_p.E166E|SCYL3_uc001ggt.2_Silent_p.E520E|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	574	Interaction with EZR.				cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGCTGCTGGGCTCGCAGTCAT	0.473													52	198					0	0	1	0	0	
SCYL3	57147	broad.mit.edu	37	1	169828220	169828220	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:169828220G>A	uc001ggs.2	-	11	1472	c.1274C>T	c.(1273-1275)GCC>GTC	p.A425V	SCYL3_uc010plw.1_Missense_Mutation_p.A71V|SCYL3_uc001ggt.2_Missense_Mutation_p.A425V|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	425					cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AAAACTTGGGGCAGTGCGTTT	0.383													31	115					0	0	1	0	0	
SCYL3	57147	broad.mit.edu	37	1	169836042	169836042	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:169836042G>T	uc001ggs.2	-	8	1008	c.810C>A	c.(808-810)TTC>TTA	p.F270L	SCYL3_uc010plw.1_5'UTR|SCYL3_uc001ggt.2_Missense_Mutation_p.F270L|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	270					cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CTTACTTAAAGAATTCCGTTT	0.289													15	38					1.49906e-05	1.54644e-05	1	1	0	
GORAB	92344	broad.mit.edu	37	1	170511686	170511686	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:170511686G>T	uc001gha.2	+	3	576	c.549G>T	c.(547-549)GAG>GAT	p.E183D	GORAB_uc001ggz.3_Missense_Mutation_p.E183D|GORAB_uc009wvx.2_Missense_Mutation_p.E3D|GORAB_uc001ghb.2_Missense_Mutation_p.E3D|GORAB_uc001ghc.2_Missense_Mutation_p.E3D|GORAB_uc001ghd.2_5'Flank	NM_152281	NP_689494	Q5T7V8	GORAB_HUMAN	golgin, RAB6-interacting isoform a	183	Potential.					Golgi apparatus|nucleus					0						TAATGGAAGAGAAAAATAAAC	0.398													47	129					9.90819e-18	1.15148e-17	1	1	0	
C1orf129	80133	broad.mit.edu	37	1	170952658	170952658	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:170952658G>A	uc001ghg.2	+	9	842	c.712G>A	c.(712-714)GAA>AAA	p.E238K	C1orf129_uc009wvy.2_Missense_Mutation_p.E45K|C1orf129_uc010plz.1_Missense_Mutation_p.E238K	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	238							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TCAACAAGACGAAAGTAAAAT	0.358													8	54					0	0	1	0	0	
C1orf129	80133	broad.mit.edu	37	1	170967331	170967331	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:170967331G>T	uc001ghg.2	+	15	1642	c.1512G>T	c.(1510-1512)GAG>GAT	p.E504D	C1orf129_uc009wvy.2_Missense_Mutation_p.E311D|C1orf129_uc010plz.1_Missense_Mutation_p.E504D	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	504							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGTTTCCGGAGACCCTGAGTT	0.393													36	105					6.29468e-14	7.06965e-14	1	1	0	
C1orf129	80133	broad.mit.edu	37	1	170967484	170967484	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:170967484C>T	uc001ghg.2	+	15	1795	c.1665C>T	c.(1663-1665)TTC>TTT	p.F555F	C1orf129_uc009wvy.2_Silent_p.F362F|C1orf129_uc010plz.1_Intron	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	555							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AATCAAAATTCCAGTTTCTCG	0.383													59	58					0	0	1	0	0	
FMO2	2327	broad.mit.edu	37	1	171173122	171173122	+	Missense_Mutation	SNP	G	A	A	rs147029269	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:171173122G>A	uc001ghk.1	+	6	863	c.746G>A	c.(745-747)CGA>CAA	p.R249Q	FMO2_uc010pmd.1_Missense_Mutation_p.R29Q	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	249					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTACTGCCACGAACAGCTGTA	0.453													20	65					0	0	1	0	0	
FMO4	2329	broad.mit.edu	37	1	171300852	171300852	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:171300852C>T	uc001gho.2	+	6	775	c.558C>T	c.(556-558)CGC>CGT	p.R186R		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	186					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					AGGGCAAACGCGTCTTGGTGA	0.468													47	195					0	0	1	0	0	
PIGC	5279	broad.mit.edu	37	1	172411136	172411136	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:172411136A>C	uc001gil.2	-	2	908	c.627T>G	c.(625-627)ATT>ATG	p.I209M	PIGC_uc001gii.1_Intron|PIGC_uc001gij.1_Intron|C1orf105_uc001gik.2_Intron|PIGC_uc001gin.2_Missense_Mutation_p.I209M|PIGC_uc001gio.2_Missense_Mutation_p.I209M	NM_153747	NP_714969	Q92535	PIGC_HUMAN	phosphatidylinositol glycan, class C	209					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			lung(1)	1						ACAGGGCAAAAATCTGAATGG	0.512													28	115					0	0	1	0	0	
C1orf9	51430	broad.mit.edu	37	1	172539808	172539808	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:172539808A>G	uc001giq.3	+	9	1303	c.987A>G	c.(985-987)ACA>ACG	p.T329T	C1orf9_uc010pmm.1_Silent_p.T329T|C1orf9_uc009wwd.2_Silent_p.T292T|C1orf9_uc010pmn.1_Silent_p.T292T|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	329	SUN.				multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		AATAGAGCACATCTGCTATTC	0.264													10	51					0	0	1	0	0	
FASLG	356	broad.mit.edu	37	1	172634779	172634779	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:172634779T>C	uc001gis.2	+	4	626	c.469T>C	c.(469-471)TCC>CCC	p.S157P	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	157	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						CAACTCAAGGTCCATGCCTCT	0.443													22	84					0	0	1	0	0	
TNFSF4	7292	broad.mit.edu	37	1	173176216	173176216	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:173176216G>A	uc001giw.2	-	1	256	c.100C>T	c.(100-102)CTG>TTG	p.L34L	TNFSF4_uc001giv.2_5'Flank	NM_003326	NP_003317	P23510	TNFL4_HUMAN	tumor necrosis factor (ligand) superfamily,	34	Helical; Signal-anchor for type II membrane protein; (Potential).				acute inflammatory response|cellular response to lipopolysaccharide|cellular response to prostaglandin E stimulus|chemokine (C-C motif) ligand 11 production|defense response to nematode|interleukin-4-dependent isotype switching to IgE isotypes|memory T cell activation|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of regulatory T cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T-helper 1 cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of alpha-beta T cell proliferation|positive regulation of B cell activation|positive regulation of immunoglobulin mediated immune response|positive regulation of immunoglobulin secretion|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-13 production|positive regulation of interleukin-4 production|positive regulation of interleukin-6 production|positive regulation of memory T cell differentiation|positive regulation of T cell cytokine production|positive regulation of T-helper 2 cell differentiation|positive regulation of type 2 immune response|response to virus|signal transduction|T-helper 2 cell activation	cell surface|extracellular space|integral to plasma membrane	cytokine activity			central_nervous_system(1)	1						AGCAGCCCCAGTCCCTGAATT	0.542													20	61					0	0	1	0	0	
SLC9A11	284525	broad.mit.edu	37	1	173542456	173542456	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:173542456C>A	uc001giz.2	-	9	1334	c.911G>T	c.(910-912)AGA>ATA	p.R304I	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	304					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TGAAAAAATTCTTAAGAACCT	0.274													14	45					1.3612e-06	1.41942e-06	1	1	0	
ANKRD45	339416	broad.mit.edu	37	1	173616051	173616051	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:173616051C>A	uc001gja.1	-	3	491	c.430G>T	c.(430-432)GAA>TAA	p.E144*		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	160											0						CGAGCCCTTTCTTCCCGGAAG	0.468													28	128					9.39395e-14	1.05303e-13	1	1	0	
DARS2	55157	broad.mit.edu	37	1	173795873	173795873	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:173795873C>T	uc001gjh.1	+	2	586	c.176C>T	c.(175-177)TCG>TTG	p.S59L	CENPL_uc009wwg.2_5'Flank|CENPL_uc001gje.3_5'Flank|CENPL_uc001gjg.3_5'Flank|CENPL_uc001gjf.3_5'Flank	NM_018122	NP_060592	Q6PI48	SYDM_HUMAN	aspartyl-tRNA synthetase 2, mitochondrial	59					tRNA aminoacylation for protein translation	mitochondrial matrix|nucleus	aspartate-tRNA ligase activity|ATP binding|nucleic acid binding			central_nervous_system(2)	2					L-Aspartic Acid(DB00128)	GAGTTGCGTTCGTCTCACTTA	0.383													21	81					0	0	1	0	0	
RC3H1	149041	broad.mit.edu	37	1	173934066	173934066	+	Silent	SNP	C	T	T	rs143588430	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:173934066C>T	uc001gju.3	-	9	1614	c.1527G>A	c.(1525-1527)CCG>CCA	p.P509P	RC3H1_uc010pms.1_Silent_p.P509P|RC3H1_uc001gjv.2_Silent_p.P509P|RC3H1_uc010pmt.1_Silent_p.P509P	NM_172071	NP_742068	Q5TC82	RC3H1_HUMAN	roquin	509					cytoplasmic mRNA processing body assembly|negative regulation of activated T cell proliferation|negative regulation of B cell proliferation|negative regulation of germinal center formation|negative regulation of T-helper cell differentiation|nuclear-transcribed mRNA catabolic process|regulation of mRNA stability|regulation of T cell receptor signaling pathway	cytoplasmic mRNA processing body|stress granule	mRNA 3'-UTR binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CTGTCCCTCGCGGAATAAGCT	0.478													52	123					0	0	1	0	0	
TNR	7143	broad.mit.edu	37	1	175325525	175325525	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:175325525G>A	uc001gkp.1	-	14	3129	c.3048C>T	c.(3046-3048)CAC>CAT	p.H1016H	TNR_uc009wwu.1_Silent_p.H1016H	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1016	Fibronectin type-III 8.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TGGCAGTATAGTGGGTGCTAG	0.488													32	122					0	0	1	0	0	
TNR	7143	broad.mit.edu	37	1	175372721	175372721	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:175372721G>A	uc001gkp.1	-	2	612	c.531C>T	c.(529-531)GGC>GGT	p.G177G	TNR_uc009wwu.1_Silent_p.G177G|TNR_uc010pmz.1_Silent_p.G177G	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	177	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGTTGCCGTGGCCACTGCAGT	0.562													33	140					0	0	1	0	0	
TNR	7143	broad.mit.edu	37	1	175375428	175375428	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:175375428G>A	uc001gkp.1	-	1	504	c.423C>T	c.(421-423)ATC>ATT	p.I141I	TNR_uc009wwu.1_Silent_p.I141I|TNR_uc010pmz.1_Silent_p.I141I	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	141	Potential.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCAGCATCTCGATCCGGCTCA	0.597													65	58					0	0	1	0	0	
PAPPA2	60676	broad.mit.edu	37	1	176525332	176525332	+	Translation_Start_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:176525332C>A	uc001gkz.2	+	2	1038	c.-126C>A	c.(-128--124)GTCTG>GTATG		PAPPA2_uc001gky.1_Translation_Start_Site|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1						cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AAAGTTTGGTCTGTGAACAAA	0.527													7	26					0.0293803	0.0295462	1	1	0	
PAPPA2	60676	broad.mit.edu	37	1	176671862	176671862	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:176671862A>C	uc001gkz.2	+	9	4520	c.3356A>C	c.(3355-3357)AAG>ACG	p.K1119T	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1119					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGAGATGGGAAGGTGTCAGAG	0.313													11	68					0	0	1	0	0	
ASTN1	460	broad.mit.edu	37	1	176857271	176857271	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:176857271G>A	uc001glc.2	-	18	3222	c.3010C>T	c.(3010-3012)CGA>TGA	p.R1004*	ASTN1_uc001glb.1_Nonsense_Mutation_p.R1004*|ASTN1_uc001gld.1_Nonsense_Mutation_p.R1004*	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1012					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GAGTCACATCGACACCAGTCC	0.527													51	42					0	0	1	0	0	
ASTN1	460	broad.mit.edu	37	1	176903370	176903370	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:176903370G>A	uc001glc.2	-	16	2801	c.2589C>T	c.(2587-2589)GGC>GGT	p.G863G	ASTN1_uc001glb.1_Silent_p.G863G|ASTN1_uc001gld.1_Silent_p.G863G	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	871					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						ACTCCTCAAAGCCGTAGATAG	0.522													42	52					0	0	1	0	0	
ASTN1	460	broad.mit.edu	37	1	176983952	176983952	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:176983952G>A	uc001glc.2	-	8	1710	c.1498C>T	c.(1498-1500)CGG>TGG	p.R500W	ASTN1_uc001glb.1_Missense_Mutation_p.R500W|ASTN1_uc001gld.1_Missense_Mutation_p.R500W|ASTN1_uc009wwx.1_Missense_Mutation_p.R500W|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	508					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CATTCGTTCCGAATGCAAAGG	0.493													316	252					0	0	1	0	0	
FAM5B	57795	broad.mit.edu	37	1	177245497	177245497	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:177245497C>T	uc001glf.2	+	6	1251	c.939C>T	c.(937-939)ATC>ATT	p.I313I	FAM5B_uc010pna.1_Silent_p.I63I|FAM5B_uc001glg.2_Silent_p.I208I	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	313						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						ATGCTGACATCCAGGCCATGG	0.577													33	28					0	0	1	0	0	
RASAL2	9462	broad.mit.edu	37	1	178423770	178423770	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:178423770C>T	uc001glr.2	+	10	1879	c.1754C>T	c.(1753-1755)TCC>TTC	p.S585F	RASAL2_uc001glq.2_Missense_Mutation_p.S733F|RASAL2_uc009wxc.2_Missense_Mutation_p.S99F	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	585					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						GAAGTAGTTTCCCAACTTGAT	0.418													22	91					0	0	1	0	0	
C1orf125	126859	broad.mit.edu	37	1	179399642	179399642	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:179399642T>C	uc001gmo.2	+	14	1515	c.1388T>C	c.(1387-1389)GTG>GCG	p.V463A	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Missense_Mutation_p.V251A|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.V463A	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	463	Potential.										0						AGAAACTTAGTGAATAAACTT	0.338													49	52					0	0	1	0	0	
C1orf125	126859	broad.mit.edu	37	1	179504086	179504086	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:179504086C>T	uc001gmo.2	+	25	3147	c.3020C>T	c.(3019-3021)TCT>TTT	p.S1007F	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.S933F|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	1007											0						TCCTCAAAATCTCCAAAGAAA	0.214													34	33					0	0	1	0	0	
NPHS2	7827	broad.mit.edu	37	1	179528894	179528894	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:179528894G>T	uc001gmq.3	-	4	539	c.454C>A	c.(454-456)CTT>ATT	p.L152I	NPHS2_uc009wxi.2_Missense_Mutation_p.L152I	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	152	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						AAAAAGAAAAGACCTAAAAGA	0.438													7	8					0.00307968	0.0031162	1	1	0	
TDRD5	163589	broad.mit.edu	37	1	179564917	179564917	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:179564917G>A	uc001gnf.1	+	4	1045	c.795G>A	c.(793-795)GAG>GAA	p.E265E	TDRD5_uc010pnp.1_Silent_p.E265E	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	265					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						ATGTAGTGGAGACTTCAAGAC	0.363													51	52					0	0	1	0	0	
KIAA1614	57710	broad.mit.edu	37	1	180904388	180904388	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:180904388C>T	uc001gok.2	+	5	1410	c.1343C>T	c.(1342-1344)TCG>TTG	p.S448L	KIAA1614_uc001gol.1_Missense_Mutation_p.S69L|KIAA1614_uc001gom.1_Intron	NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	448										ovary(3)|skin(1)	4						CCCTCGCCGTCGCACGTGCGC	0.697													10	10					0	0	1	0	0	
STX6	10228	broad.mit.edu	37	1	180962512	180962512	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:180962512C>A	uc010pnq.1	-	4	587	c.350G>T	c.(349-351)AGA>ATA	p.R117I	STX6_uc001goo.2_Missense_Mutation_p.R117I|STX6_uc010pnr.1_Missense_Mutation_p.R16I	NM_005819	NP_005810	O43752	STX6_HUMAN	syntaxin 6	117	Cytoplasmic (Potential).				Golgi vesicle transport|intracellular protein transport|vesicle fusion	clathrin-coated vesicle|early endosome|integral to membrane|perinuclear region of cytoplasm|plasma membrane|trans-Golgi network membrane	SNAP receptor activity			ovary(1)	1						TCTATTTTTTCTTTCAGCTAA	0.313													31	96					1.42033e-22	1.69513e-22	1	1	0	
CACNA1E	777	broad.mit.edu	37	1	181684518	181684518	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:181684518G>A	uc001gow.2	+	9	1381	c.1216G>A	c.(1216-1218)GCC>ACC	p.A406T	CACNA1E_uc009wxs.2_Missense_Mutation_p.A313T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	406	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGGAACATCCGCCTTAGAAGG	0.378													3	11					0	0	1	0	0	
RNASEL	6041	broad.mit.edu	37	1	182555419	182555419	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:182555419C>T	uc001gpj.1	-	1	690	c.523G>A	c.(523-525)GCT>ACT	p.A175T	RNASEL_uc009wxz.1_Missense_Mutation_p.A175T|RNASEL_uc001gpk.2_Missense_Mutation_p.A175T|RNASEL_uc009wya.1_Missense_Mutation_p.A175T	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	175	ANK 5.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						TTTTCAGCAGCGTCCATGAGA	0.473									Hereditary_Prostate_Cancer				19	86					0	0	1	0	0	
NPL	80896	broad.mit.edu	37	1	182798041	182798041	+	Nonstop_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:182798041T>G	uc009wyb.2	+	13	1101	c.961T>G	c.(961-963)TAG>GAG	p.*321E	NPL_uc010pny.1_RNA|NPL_uc001gpo.1_Nonstop_Mutation_p.*302E|NPL_uc009wyc.2_Intron|NPL_uc001gpp.3_Intron|NPL_uc001gpq.1_Nonstop_Mutation_p.*321E	NM_030769	NP_110396	Q9BXD5	NPL_HUMAN	N-acetylneuraminate pyruvate lyase	321					carbohydrate metabolic process	cytoplasm	N-acetylneuraminate lyase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGCTGGTAGCTAGTGCCTCTC	0.393													47	112					0	0	1	0	0	
C1orf14	81626	broad.mit.edu	37	1	182908317	182908317	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:182908317C>T	uc001gpu.2	-	5	1355	c.1070G>A	c.(1069-1071)CGC>CAC	p.R357H	C1orf14_uc001gpv.2_Missense_Mutation_p.R238H|C1orf14_uc010pnz.1_Missense_Mutation_p.R215H|C1orf14_uc001gpw.2_Missense_Mutation_p.R77H	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	429											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		TTACCGGAGGCGTAAATCTTC	0.333													31	40					0	0	1	0	0	
LAMC1	3915	broad.mit.edu	37	1	183085943	183085943	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183085943G>A	uc001gpy.3	+	8	1726	c.1469G>A	c.(1468-1470)CGG>CAG	p.R490Q		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	490	Laminin EGF-like 4.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCTAATCCTCGGGGTTGCACA	0.373													76	70					0	0	1	0	0	
LAMC1	3915	broad.mit.edu	37	1	183091010	183091010	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183091010C>T	uc001gpy.3	+	12	2400	c.2143C>T	c.(2143-2145)CTT>TTT	p.L715F		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	715	Laminin EGF-like 5; second part.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AACTCCTAATCTTGGACCATA	0.512													41	35					0	0	1	0	0	
LAMC1	3915	broad.mit.edu	37	1	183111855	183111855	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183111855G>A	uc001gpy.3	+	28	5017	c.4760G>A	c.(4759-4761)CGC>CAC	p.R1587H		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	1587	Potential.|Domain II and I.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AAGGACATTCGCAATCTGGAG	0.502													52	45					0	0	1	0	0	
NMNAT2	23057	broad.mit.edu	37	1	183259293	183259293	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183259293G>A	uc001gqc.1	-	4	626	c.291C>T	c.(289-291)AGC>AGT	p.S97S	NMNAT2_uc001gqb.1_Silent_p.S92S|NMNAT2_uc001gqd.2_5'UTR	NM_015039	NP_055854	Q9BZQ4	NMNA2_HUMAN	nicotinamide mononucleotide adenylyltransferase	97					water-soluble vitamin metabolic process	Golgi membrane|nucleus	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity			skin(1)	1						GTTCCAACACGCTGCAGGTCG	0.572													4	5					0	0	1	0	0	
NCF2	4688	broad.mit.edu	37	1	183538297	183538297	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183538297C>T	uc001gqj.3	-	7	968	c.693G>A	c.(691-693)CCG>CCA	p.P231P	NCF2_uc010pod.1_Silent_p.P186P|NCF2_uc010poe.1_Silent_p.P150P|NCF2_uc001gqk.3_Silent_p.P231P	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	231					cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						CTGGGGTTTTCGGTCTGGGTG	0.473													39	146					0	0	1	0	0	
RGL1	23179	broad.mit.edu	37	1	183816872	183816872	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183816872C>T	uc001gqo.2	+	3	468	c.311C>T	c.(310-312)GCC>GTC	p.A104V	RGL1_uc010pof.1_Intron|RGL1_uc001gqm.2_Missense_Mutation_p.A139V|RGL1_uc010pog.1_Missense_Mutation_p.A102V|RGL1_uc010poh.1_Missense_Mutation_p.A102V|RGL1_uc010poi.1_Missense_Mutation_p.A104V	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	104	N-terminal Ras-GEF.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						AGAGGCTTTGCCTCCACTAAA	0.458													45	122					0	0	1	0	0	
RGL1	23179	broad.mit.edu	37	1	183861216	183861216	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183861216G>A	uc001gqo.2	+	9	1218	c.1061G>A	c.(1060-1062)CGA>CAA	p.R354Q	RGL1_uc010pof.1_Missense_Mutation_p.R159Q|RGL1_uc001gqm.2_Missense_Mutation_p.R389Q|RGL1_uc010pog.1_Missense_Mutation_p.R352Q|RGL1_uc010poh.1_Missense_Mutation_p.R352Q|RGL1_uc010poi.1_Missense_Mutation_p.R354Q	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	354	Ras-GEF.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						CATAGGGACCGAATGCTGATG	0.428													18	35					0	0	1	0	0	
RGL1	23179	broad.mit.edu	37	1	183873985	183873985	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183873985A>C	uc001gqo.2	+	13	1509	c.1352A>C	c.(1351-1353)GAA>GCA	p.E451A	RGL1_uc010pof.1_Missense_Mutation_p.E256A|RGL1_uc001gqm.2_Missense_Mutation_p.E486A|RGL1_uc010pog.1_Missense_Mutation_p.E449A|RGL1_uc010poh.1_Missense_Mutation_p.E449A|RGL1_uc010poi.1_Missense_Mutation_p.E422A	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	451	Ras-GEF.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						CTGCTTTAGGAATTTGAAGTG	0.378													31	89					0	0	1	0	0	
GLT25D2	23127	broad.mit.edu	37	1	183909901	183909901	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183909901A>G	uc001gqr.2	-	11	1790	c.1418T>C	c.(1417-1419)ATG>ACG	p.M473T	GLT25D2_uc010poj.1_Missense_Mutation_p.M473T|GLT25D2_uc001gqp.2_Missense_Mutation_p.M81T|GLT25D2_uc001gqq.2_Missense_Mutation_p.M210T|GLT25D2_uc001gqs.2_Missense_Mutation_p.M353T	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	473					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						CTTTACTTGCATCCTCTTCCT	0.463													69	72					0	0	1	0	0	
GLT25D2	23127	broad.mit.edu	37	1	183913357	183913357	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:183913357T>C	uc001gqr.2	-	10	1742	c.1370A>G	c.(1369-1371)GAC>GGC	p.D457G	GLT25D2_uc010poj.1_Missense_Mutation_p.D457G|GLT25D2_uc001gqp.2_Missense_Mutation_p.D65G|GLT25D2_uc001gqq.2_Missense_Mutation_p.D194G|GLT25D2_uc001gqs.2_Missense_Mutation_p.D337G	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	457					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						CTGAGCCTGGTCAATGTTATC	0.473													31	115					0	0	1	0	0	
EDEM3	80267	broad.mit.edu	37	1	184677372	184677372	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:184677372T>G	uc010pok.1	-	17	2213	c.1952A>C	c.(1951-1953)CAA>CCA	p.Q651P	EDEM3_uc010pol.1_RNA|EDEM3_uc010pom.1_Missense_Mutation_p.Q651P	NM_025191	NP_079467	Q9BZQ6	EDEM3_HUMAN	ER degradation enhancer, mannosidase alpha-like	651					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			skin(1)	1						GGAAACAATTTGTACAGCTCG	0.438													6	53					0	0	1	0	0	
EDEM3	80267	broad.mit.edu	37	1	184688582	184688582	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:184688582A>G	uc010pok.1	-	10	1333	c.1072T>C	c.(1072-1074)TTG>CTG	p.L358L	EDEM3_uc010pol.1_RNA|EDEM3_uc010pom.1_Silent_p.L358L	NM_025191	NP_079467	Q9BZQ6	EDEM3_HUMAN	ER degradation enhancer, mannosidase alpha-like	358					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			skin(1)	1						TATACCTGCAAGCCTGGGAAG	0.383													15	74					0	0	1	0	0	
RNF2	6045	broad.mit.edu	37	1	185056762	185056762	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185056762G>A	uc001grc.1	+	2	310	c.77G>A	c.(76-78)CGA>CAA	p.R26Q	RNF2_uc001grd.1_Missense_Mutation_p.R26Q	NM_007212	NP_009143	Q99496	RING2_HUMAN	ring finger protein 2	26	Interaction with HIP2.				histone H2A monoubiquitination|transcription, DNA-dependent	MLL1 complex|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			breast(1)	1		Breast(1374;0.000496)		Colorectal(1306;6.9e-08)|KIRC - Kidney renal clear cell carcinoma(1967;8.12e-06)		GAGTTACAACGAACACCTCAG	0.383													25	113					0	0	1	0	0	
C1orf25	81627	broad.mit.edu	37	1	185121027	185121027	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185121027C>A	uc001grf.3	-	2	548	c.276G>T	c.(274-276)GAG>GAT	p.E92D	C1orf25_uc010pon.1_5'UTR	NM_030934	NP_112196	Q7Z2T5	TRM1L_HUMAN	N2,N2-dimethylguanosine tRNA	92						intracellular	RNA binding|tRNA (guanine-N2-)-methyltransferase activity|zinc ion binding				0						AAGCTAAATTCTCTAGATCAG	0.323													40	30					5.04308e-16	5.7748e-16	1	1	0	
C1orf26	54823	broad.mit.edu	37	1	185143597	185143597	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185143597T>C	uc001grg.3	+	5	432	c.318T>C	c.(316-318)AAT>AAC	p.N106N	C1orf26_uc001grh.3_Silent_p.N106N	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	106											0						CATATTCAAATGATAATCAAA	0.308													25	26					0	0	1	0	0	
C1orf26	54823	broad.mit.edu	37	1	185175889	185175889	+	Missense_Mutation	SNP	C	T	T	rs145355483		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185175889C>T	uc001grg.3	+	13	2080	c.1966C>T	c.(1966-1968)CGT>TGT	p.R656C	C1orf26_uc001grh.3_Missense_Mutation_p.R656C	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	656											0						CAAAAATCTCCGTAAAGGTAT	0.303													30	24					0	0	1	0	0	
C1orf26	54823	broad.mit.edu	37	1	185183737	185183737	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185183737C>A	uc001grg.3	+	14	2185	c.2071C>A	c.(2071-2073)CTT>ATT	p.L691I	C1orf26_uc001grh.3_Missense_Mutation_p.L691I	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	691											0						TGATGGTATTCTTCCACAGAC	0.378													25	100					7.87624e-14	8.83987e-14	1	1	0	
C1orf26	54823	broad.mit.edu	37	1	185191052	185191052	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185191052G>T	uc001grg.3	+	15	2307	c.2193G>T	c.(2191-2193)AAG>AAT	p.K731N	C1orf26_uc001grh.3_Missense_Mutation_p.K731N	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	731											0						CTTCATTGAAGAATTCTCATA	0.373													125	117					9.6388e-71	1.20331e-70	1	1	0	
IVNS1ABP	10625	broad.mit.edu	37	1	185267253	185267253	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185267253C>T	uc001grl.2	-	15	2466	c.1843G>A	c.(1843-1845)GAT>AAT	p.D615N	IVNS1ABP_uc001gri.2_Missense_Mutation_p.D275N|IVNS1ABP_uc001grj.2_Missense_Mutation_p.D275N|IVNS1ABP_uc009wyj.2_Missense_Mutation_p.D397N|IVNS1ABP_uc009wyk.2_RNA	NM_006469	NP_006460	Q9Y6Y0	NS1BP_HUMAN	influenza virus NS1A binding protein	615	Kelch 6.				interspecies interaction between organisms|response to virus|RNA splicing|transcription from RNA polymerase III promoter	cytoplasm|cytoskeleton|spliceosomal complex|transcription factor complex				ovary(4)|central_nervous_system(1)	5						TCATTGCCATCGAATCCTCCC	0.398													152	172					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	185892598	185892598	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185892598T>C	uc001grq.1	+	8	1327	c.1098T>C	c.(1096-1098)AGT>AGC	p.S366S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	366					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AACTTTTGAGTATCTCAGGAA	0.353													45	39					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	185892648	185892648	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185892648G>A	uc001grq.1	+	8	1377	c.1148G>A	c.(1147-1149)CGA>CAA	p.R383Q		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	383					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TACCCACATCGAAAACCTTAT	0.358													21	95					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	185950199	185950199	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185950199G>T	uc001grq.1	+	17	2885	c.2656G>T	c.(2656-2658)GGA>TGA	p.G886*	HMCN1_uc001grr.1_Nonsense_Mutation_p.G227*	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	886					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AACAGTGACCGGACTTGGTAA	0.383													35	97					1.26612e-14	1.43161e-14	1	1	0	
HMCN1	83872	broad.mit.edu	37	1	185953431	185953431	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:185953431C>A	uc001grq.1	+	19	3150	c.2921C>A	c.(2920-2922)TCT>TAT	p.S974Y	HMCN1_uc001grr.1_Missense_Mutation_p.S315Y	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	974	Ig-like C2-type 6.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAAACTACCTCTGTGGTTGTG	0.398													42	142					8.86878e-18	1.03113e-17	1	1	0	
HMCN1	83872	broad.mit.edu	37	1	186063435	186063435	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186063435C>T	uc001grq.1	+	67	10453	c.10224C>T	c.(10222-10224)GTC>GTT	p.V3408V		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3408	Ig-like C2-type 32.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGTCTGATGTCGCTGTGTATA	0.388													19	92					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	186084048	186084048	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186084048G>T	uc001grq.1	+	74	11603	c.11374G>T	c.(11374-11376)GAT>TAT	p.D3792Y		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3792	Ig-like C2-type 36.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGCTGGAACAGATCGCAGGCG	0.423													129	118					6.21504e-60	7.74823e-60	1	1	0	
HMCN1	83872	broad.mit.edu	37	1	186092119	186092119	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186092119T>C	uc001grq.1	+	81	12495	c.12266T>C	c.(12265-12267)GTT>GCT	p.V4089A		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4089	Ig-like C2-type 40.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAGGAATATGTTATTGCTGTG	0.403													73	54					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	186151325	186151325	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186151325T>C	uc001grq.1	+	105	16549	c.16320T>C	c.(16318-16320)GAT>GAC	p.D5440D	HMCN1_uc001grs.1_Silent_p.D892D	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	5440	EGF-like 7; calcium-binding (Potential).				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAAATACAGATGCCTGCCAGC	0.428													51	152					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	186157020	186157020	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186157020G>A	uc001grq.1	+	106	16649	c.16420G>A	c.(16420-16422)GAT>AAT	p.D5474N	HMCN1_uc001grs.1_Missense_Mutation_p.D926N	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	5474					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCTAGATATCGATGAATGTCT	0.517													25	120					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	186158953	186158953	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186158953C>A	uc001grq.1	+	107	17080	c.16851C>A	c.(16849-16851)ACC>ACA	p.T5617T	HMCN1_uc001grs.1_Silent_p.T1069T	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	5617					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCAATGGGACCATTGAATATC	0.443													20	97					1.00905e-13	1.13002e-13	1	1	0	
PRG4	10216	broad.mit.edu	37	1	186274033	186274033	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186274033G>T	uc001gru.3	+	6	628	c.577G>T	c.(577-579)GAA>TAA	p.E193*	PRG4_uc001grt.3_Nonsense_Mutation_p.E152*|PRG4_uc009wyl.2_Intron|PRG4_uc009wym.2_Intron|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	193					cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						TGCTAATAGAGAATTACAGAA	0.259													41	54					7.63091e-17	8.80209e-17	1	1	0	
PRG4	10216	broad.mit.edu	37	1	186277929	186277929	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186277929A>C	uc001gru.3	+	7	3129	c.3078A>C	c.(3076-3078)AAA>AAC	p.K1026N	PRG4_uc001grt.3_Missense_Mutation_p.K985N|PRG4_uc009wyl.2_Missense_Mutation_p.K933N|PRG4_uc009wym.2_Missense_Mutation_p.K892N|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	1026					cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						AGCCAACCAAAGCACCCAAAA	0.418													90	78					0	0	1	0	0	
TPR	7175	broad.mit.edu	37	1	186321231	186321231	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186321231T>G	uc001grv.2	-	19	2643	c.2346A>C	c.(2344-2346)GAA>GAC	p.E782D		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	782	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TCTTCAAATTTTCTGCTCTTA	0.313			T	NTRK1	papillary thyroid								48	39					0	0	1	0	0	
PTGS2	5743	broad.mit.edu	37	1	186643844	186643844	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:186643844C>A	uc001gsb.2	-	10	1593	c.1456G>T	c.(1456-1458)GCT>TCT	p.A486S	PTGS2_uc009wyo.2_Missense_Mutation_p.A333S	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	486					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	AGCTCCACAGCATCGATGTCA	0.468													73	60					2.6465e-34	3.26017e-34	1	1	0	
FAM5C	339479	broad.mit.edu	37	1	190067455	190067455	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:190067455T>C	uc001gse.1	-	8	2226	c.1994A>G	c.(1993-1995)AAC>AGC	p.N665S	FAM5C_uc010pot.1_Missense_Mutation_p.N563S	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	665						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CACTTGAATGTTATTGATTTT	0.458													92	98					0	0	1	0	0	
FAM5C	339479	broad.mit.edu	37	1	190423785	190423785	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:190423785C>T	uc001gse.1	-	2	468	c.236G>A	c.(235-237)AGG>AAG	p.R79K	FAM5C_uc010pot.1_Missense_Mutation_p.G41R	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	79						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TGCTTCATACCTGTATATCTT	0.413													15	25					0	0	1	0	0	
TROVE2	6738	broad.mit.edu	37	1	193051378	193051378	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:193051378T>C	uc001gss.2	+	7	1441	c.1266T>C	c.(1264-1266)TGT>TGC	p.C422C	TROVE2_uc001gst.1_Silent_p.C147C|TROVE2_uc001gsu.1_Silent_p.C147C|TROVE2_uc001gsv.1_Silent_p.C422C|TROVE2_uc001gsw.2_Silent_p.C422C|TROVE2_uc009wyp.2_Silent_p.C422C|TROVE2_uc009wyq.2_Silent_p.C422C|TROVE2_uc001gsx.1_Silent_p.C422C	NM_004600	NP_004591	P10155	RO60_HUMAN	TROVE domain family, member 2 isoform 2	422					transcription from RNA polymerase III promoter	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|RNA binding				0						TGGTACCATGTCCAGTGACTA	0.343													100	78					0	0	1	0	0	
CDC73	79577	broad.mit.edu	37	1	193099338	193099338	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:193099338G>A	uc001gtb.2	+	3	515	c.272G>A	c.(271-273)CGA>CAA	p.R91Q		NM_024529	NP_078805	Q6P1J9	CDC73_HUMAN	parafibromin	91			R -> P (found in a patient with isolated hyperparathyroidism and parathyroid adenomas).		cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			parathyroid(46)|ovary(1)|breast(1)|pancreas(1)	49						AGACCTGATCGAAAAGATCTA	0.249									Hyperparathyroidism_Familial_Isolated|Hyperparathyroidism-Jaw_Tumor_Syndrome				14	50					0	0	1	0	0	
CDC73	79577	broad.mit.edu	37	1	193111184	193111184	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:193111184A>C	uc001gtb.2	+	7	960	c.717A>C	c.(715-717)CAA>CAC	p.Q239H		NM_024529	NP_078805	Q6P1J9	CDC73_HUMAN	parafibromin	239					cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			parathyroid(46)|ovary(1)|breast(1)|pancreas(1)	49						CTATCTTACAAAGCACAGGAA	0.398									Hyperparathyroidism_Familial_Isolated|Hyperparathyroidism-Jaw_Tumor_Syndrome				43	42					0	0	1	0	0	
B3GALT2	8707	broad.mit.edu	37	1	193150455	193150455	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:193150455G>A	uc001gtc.3	-	2	953	c.238C>T	c.(238-240)CGG>TGG	p.R80W	CDC73_uc001gtb.2_Intron	NM_003783	NP_003774	O43825	B3GT2_HUMAN	UDP-Gal:betaGlcNAc beta	80	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1						CAAATGTTCCGAAGGGAGCTG	0.478													88	83					0	0	1	0	0	
KCNT2	343450	broad.mit.edu	37	1	196303054	196303054	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:196303054C>T	uc001gtd.1	-	17	1980	c.1920G>A	c.(1918-1920)TCG>TCA	p.S640S	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Silent_p.S590S|KCNT2_uc001gtf.1_Silent_p.S640S|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.S640S|KCNT2_uc001gth.1_Silent_p.S161S	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	640	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						ATGTTTGAATCGATGATGTAT	0.408													23	27					0	0	1	0	0	
KCNT2	343450	broad.mit.edu	37	1	196438181	196438181	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:196438181C>T	uc001gtd.1	-	6	462	c.402G>A	c.(400-402)CAG>CAA	p.Q134Q	KCNT2_uc009wyt.1_5'Flank|KCNT2_uc001gte.1_Silent_p.Q134Q|KCNT2_uc001gtf.1_Silent_p.Q134Q|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.Q134Q|KCNT2_uc009wyv.1_Intron	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	134	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTCGTAAAATCTGTTCCCAGA	0.328													10	24					0	0	1	0	0	
CFH	3075	broad.mit.edu	37	1	196648758	196648758	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:196648758T>G	uc001gtj.3	+	6	865	c.625T>G	c.(625-627)TCA>GCA	p.S209A	CFH_uc001gti.3_Missense_Mutation_p.S209A|CFH_uc009wyw.2_Missense_Mutation_p.S209A|CFH_uc009wyx.2_Missense_Mutation_p.S145A	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	209	Sushi 4.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TTTAGAAATTTCATGCAAATC	0.289													29	26					0	0	1	0	0	
CFH	3075	broad.mit.edu	37	1	196716243	196716243	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:196716243C>A	uc001gtj.3	+	22	3736	c.3496C>A	c.(3496-3498)CCG>ACG	p.P1166T		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1166					complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ATTTTCAGATCCGTGTGTAAT	0.318													23	78					1.36565e-18	1.59705e-18	1	1	0	
CFH	3075	broad.mit.edu	37	1	196716413	196716413	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:196716413A>G	uc001gtj.3	+	22	3906	c.3666A>G	c.(3664-3666)AAA>AAG	p.K1222K		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1222	Sushi 20.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GGGATGGGAAACTGGAGTATC	0.348													20	88					0	0	1	0	0	
CFHR5	81494	broad.mit.edu	37	1	196952070	196952070	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:196952070T>G	uc001gts.3	+	2	242	c.114T>G	c.(112-114)GAT>GAG	p.D38E		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	38	Sushi 1.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						ATGAAGAAGATTATAACCCTT	0.333													24	107					0	0	1	0	0	
CFHR5	81494	broad.mit.edu	37	1	196964986	196964986	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:196964986A>G	uc001gts.3	+	5	875	c.747A>G	c.(745-747)ATA>ATG	p.I249M		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	249	Sushi 4.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						CTAAGAAAATACAATGTGTGG	0.313													13	69					0	0	1	0	0	
CFHR5	81494	broad.mit.edu	37	1	196977700	196977700	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:196977700A>G	uc001gts.3	+	10	1725	c.1597A>G	c.(1597-1599)ACA>GCA	p.T533A		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	533	Sushi 9.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						CTATGCAAAAACAGGGGATGC	0.368													15	59					0	0	1	0	0	
F13B	2165	broad.mit.edu	37	1	197021915	197021915	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:197021915C>A	uc001gtt.1	-	9	1448	c.1404G>T	c.(1402-1404)ATG>ATT	p.M468I		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	468	Sushi 8.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						ATTTCCACTTCATTTCTATGT	0.294													22	102					3.62473e-10	3.92412e-10	1	1	0	
ASPM	259266	broad.mit.edu	37	1	197057536	197057536	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:197057536A>G	uc001gtu.2	-	26	10268	c.10011T>C	c.(10009-10011)TAT>TAC	p.Y3337Y	ASPM_uc001gtv.2_Silent_p.Y1752Y|ASPM_uc001gtw.3_Silent_p.Y1185Y	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	3337					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TTTCTACATCATAAACTGCTG	0.313													70	84					0	0	1	0	0	
ASPM	259266	broad.mit.edu	37	1	197069802	197069802	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:197069802T>G	uc001gtu.2	-	18	8836	c.8579A>C	c.(8578-8580)AAA>ACA	p.K2860T	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.K708T	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2860	IQ 32.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						AGCAGCTCTTTTCTGCTGAAC	0.393													22	73					0	0	1	0	0	
ASPM	259266	broad.mit.edu	37	1	197112287	197112287	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:197112287A>C	uc001gtu.2	-	3	1352	c.1095T>G	c.(1093-1095)ATT>ATG	p.I365M	ASPM_uc001gtv.2_Missense_Mutation_p.I365M|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	365					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						CTGGACTTAAAATTTTCTGAT	0.284													33	34					0	0	1	0	0	
ZBTB41	360023	broad.mit.edu	37	1	197145707	197145707	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:197145707T>A	uc001gtx.1	-	7	1935	c.1866A>T	c.(1864-1866)AAA>AAT	p.K622N	ZBTB41_uc009wyz.1_RNA	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	622	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						AATGTATTTTTTTGTGCTTTG	0.303													56	56					0	0	1	0	0	
ZBTB41	360023	broad.mit.edu	37	1	197169588	197169588	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:197169588T>G	uc001gtx.1	-	1	85	c.16A>C	c.(16-18)AAG>CAG	p.K6Q	ZBTB41_uc009wyz.1_RNA|CRB1_uc010poz.1_5'Flank	NM_194314	NP_919290	Q5SVQ8	ZBT41_HUMAN	zinc finger and BTB domain containing 41	6					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						GAAGTAACCTTTCTCCTCTTC	0.363													32	88					0	0	1	0	0	
CRB1	23418	broad.mit.edu	37	1	197316596	197316596	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:197316596T>C	uc001gtz.2	+	4	1110	c.975T>C	c.(973-975)TGT>TGC	p.C325C	CRB1_uc010poz.1_Silent_p.C256C|CRB1_uc001gty.1_Silent_p.C325C|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Intron|CRB1_uc010ppb.1_Silent_p.C325C|CRB1_uc010ppc.1_RNA	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	325	Extracellular (Potential).|EGF-like 8.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ATTACACTTGTCACTGCTGGC	0.378													22	85					0	0	1	0	0	
CRB1	23418	broad.mit.edu	37	1	197404523	197404523	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:197404523A>G	uc001gtz.2	+	9	3665	c.3530A>G	c.(3529-3531)AAC>AGC	p.N1177S	CRB1_uc010poz.1_Missense_Mutation_p.N1153S|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.N1065S|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.N658S|CRB1_uc001gub.1_Missense_Mutation_p.N826S	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1177	EGF-like 16; calcium-binding (Potential).|Extracellular (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TGTGAACTCAACATCGATGAA	0.483													22	65					0	0	1	0	0	
LHX9	56956	broad.mit.edu	37	1	197896799	197896799	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:197896799G>A	uc001guk.1	+	4	1249	c.812G>A	c.(811-813)CGA>CAA	p.R271Q	LHX9_uc001gui.1_Missense_Mutation_p.R262Q|LHX9_uc001guj.1_Missense_Mutation_p.R277Q	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	271	Homeobox.				motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						AAGCGCATGCGAACCTCTTTC	0.522													88	308					0	0	1	0	0	
PTPRC	5788	broad.mit.edu	37	1	198687388	198687388	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:198687388T>C	uc001gur.1	+	14	1790	c.1610T>C	c.(1609-1611)TTC>TCC	p.F537S	PTPRC_uc001gus.1_Missense_Mutation_p.F489S|PTPRC_uc001gut.1_Missense_Mutation_p.F376S|PTPRC_uc009wzf.1_Missense_Mutation_p.F425S|PTPRC_uc010ppg.1_Missense_Mutation_p.F473S	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	537	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						AATTGCGATTTCCGTGTAAAA	0.383													17	57					0	0	1	0	0	
FAM58B	339521	broad.mit.edu	37	1	200183373	200183373	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:200183373G>A	uc009wzi.1	+	1	718	c.682G>A	c.(682-684)GAC>AAC	p.D228N		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	228					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					GTTTAGTGACGACCTTACCAA	0.547													24	108					0	0	1	0	0	
KIF14	9928	broad.mit.edu	37	1	200524575	200524575	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:200524575T>C	uc010ppk.1	-	28	4800	c.4361A>G	c.(4360-4362)AAA>AGA	p.K1454R	KIF14_uc010ppj.1_Missense_Mutation_p.K963R	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	1454	Required for CIT-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						TTTCATTTCTTTGGTAACCTA	0.259													16	52					0	0	1	0	0	
KIF14	9928	broad.mit.edu	37	1	200573037	200573037	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:200573037C>T	uc010ppk.1	-	9	2232	c.1793G>A	c.(1792-1794)CGA>CAA	p.R598Q	KIF14_uc010ppj.1_Missense_Mutation_p.R107Q	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	598	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						TAGGTTAATTCGACTTGTTAT	0.368													19	66					0	0	1	0	0	
KIF14	9928	broad.mit.edu	37	1	200587451	200587451	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:200587451T>C	uc010ppk.1	-	2	840	c.401A>G	c.(400-402)AAA>AGA	p.K134R	KIF14_uc010ppj.1_5'UTR	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	134	Required for PRC1-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						TTCAGCTGTTTTCCACTTTTC	0.363													12	135					0	0	1	0	0	
DDX59	83479	broad.mit.edu	37	1	200613475	200613475	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:200613475T>G	uc009wzk.2	-	8	2010	c.1767A>C	c.(1765-1767)CAA>CAC	p.Q589H	DDX59_uc010ppl.1_Intron	NM_001031725	NP_001026895	Q5T1V6	DDX59_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	589						intracellular	ATP binding|ATP-dependent helicase activity|metal ion binding|RNA binding			ovary(2)|breast(1)|central_nervous_system(1)	4						TATCTTTCTGTTGTTCCTTTC	0.368													41	145					0	0	1	0	0	
DDX59	83479	broad.mit.edu	37	1	200619637	200619637	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:200619637C>A	uc009wzk.2	-	5	1473	c.1230G>T	c.(1228-1230)AAG>AAT	p.K410N	DDX59_uc010ppl.1_Missense_Mutation_p.K410N	NM_001031725	NP_001026895	Q5T1V6	DDX59_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	410						intracellular	ATP binding|ATP-dependent helicase activity|metal ion binding|RNA binding			ovary(2)|breast(1)|central_nervous_system(1)	4						AAGGTAGGTTCTTTTCTCCAG	0.378													60	73					3.84483e-29	4.68494e-29	1	1	0	
KIF21B	23046	broad.mit.edu	37	1	200944028	200944028	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:200944028G>A	uc001gvs.1	-	34	4945	c.4628C>T	c.(4627-4629)GCG>GTG	p.A1543V	KIF21B_uc001gvr.1_Missense_Mutation_p.A1530V|KIF21B_uc009wzl.1_Missense_Mutation_p.A1543V|KIF21B_uc010ppn.1_Missense_Mutation_p.A1530V	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1543	WD 6.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GTCCTTGTGCGCATTGGGGAT	0.642													47	58					0	0	1	0	0	
CACNA1S	779	broad.mit.edu	37	1	201018159	201018159	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:201018159T>G	uc001gvv.2	-	35	4537	c.4310A>C	c.(4309-4311)AAG>ACG	p.K1437T		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1437	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGGCAGAACTTCCCAAAGCC	0.592													10	24					0	0	1	0	0	
IGFN1	91156	broad.mit.edu	37	1	201195200	201195200	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:201195200G>A	uc001gwc.2	+	11	2987	c.2215G>A	c.(2215-2217)GCC>ACC	p.A739T	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						TGAGCTGGGGGCCAGCAAACC	0.677													18	29					0	0	1	0	0	
TNNT2	7139	broad.mit.edu	37	1	201332436	201332436	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:201332436A>G	uc001gwf.2	-	12	657	c.588T>C	c.(586-588)GGT>GGC	p.G196G	TNNT2_uc009wzn.2_5'Flank|TNNT2_uc009wzo.2_5'Flank|TNNT2_uc009wzp.2_5'Flank|TNNT2_uc001gwg.2_Silent_p.G186G|TNNT2_uc001gwh.2_Silent_p.G181G|TNNT2_uc001gwi.2_Silent_p.G156G|TNNT2_uc009wzr.2_Silent_p.G127G|TNNT2_uc001gwj.1_RNA|TNNT2_uc009wzs.1_Silent_p.G161G|TNNT2_uc001gwk.1_Silent_p.G127G|TNNT2_uc009wzt.1_Silent_p.G186G	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	196					ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						TCTGGATGTAACCCCCAAAAT	0.542													51	202					0	0	1	0	0	
LMOD1	25802	broad.mit.edu	37	1	201869382	201869382	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:201869382C>A	uc001gxb.2	-	2	1007	c.759G>T	c.(757-759)GAG>GAT	p.E253D	LMOD1_uc010ppu.1_Missense_Mutation_p.E202D	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	253	8 X approximate tandem repeats.|6.				muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						TTTTTACCTTCTCATCCTCCT	0.393													6	32					3.59834e-05	3.69903e-05	1	1	0	
UBE2T	29089	broad.mit.edu	37	1	202301044	202301044	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:202301044G>A	uc001gxx.3	-	7	649	c.513C>T	c.(511-513)GAC>GAT	p.D171D		NM_014176	NP_054895	Q9NPD8	UBE2T_HUMAN	ubiquitin-conjugating enzyme E2T	171					DNA repair|protein K11-linked ubiquitination|protein K27-linked ubiquitination|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination	nucleoplasm	ATP binding|ubiquitin-protein ligase activity				0						GTACTCTGGAGTCACCAGCCT	0.453													62	174					0	0	1	0	0	
PPP1R12B	4660	broad.mit.edu	37	1	202418139	202418139	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:202418139G>A	uc001gya.1	+	13	1834	c.1690G>A	c.(1690-1692)GAC>AAC	p.D564N	PPP1R12B_uc001gxz.1_Missense_Mutation_p.D564N	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	564					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			ATCCCAGGCCGACACAACAGC	0.478													25	85					0	0	1	0	0	
KDM5B	10765	broad.mit.edu	37	1	202715102	202715102	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:202715102T>C	uc001gyf.2	-	16	2323	c.2207A>G	c.(2206-2208)TAC>TGC	p.Y736C	KDM5B_uc009xag.2_Missense_Mutation_p.Y772C|KDM5B_uc001gyg.1_Missense_Mutation_p.Y578C	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	736					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						ATCCAGCGTGTACCTATACCT	0.418													48	205					0	0	1	0	0	
LOC148709	148709	broad.mit.edu	37	1	202842502	202842502	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:202842502G>A	uc001gyk.1	+	3		c.454G>A				NR_002929				Homo sapiens cDNA FLJ31247 fis, clone KIDNE2005296, weakly similar to ACTIN, CYTOPLASMIC 1.												0						ATAGTTCCCCGAGCCATGTTC	0.557													3	8					0	0	1	0	0	
TMEM183A	92703	broad.mit.edu	37	1	202977772	202977772	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:202977772A>G	uc001gyu.1	+	3	259	c.201A>G	c.(199-201)GTA>GTG	p.V67V	TMEM183A_uc009xai.1_Silent_p.V67V|TMEM183A_uc001gyv.1_RNA|TMEM183A_uc001gyw.1_Silent_p.V67V|TMEM183A_uc001gyx.1_Silent_p.V67V	NM_001079809	NP_001073277	Q8IXX5	T183A_HUMAN	transmembrane protein 183B	67						integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.18)			TTCTTCTAGTAAAATCTCTTT	0.478													51	35					0	0	1	0	0	
CHI3L1	1116	broad.mit.edu	37	1	203150382	203150382	+	Missense_Mutation	SNP	C	T	T	rs141218577		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:203150382C>T	uc001gzi.2	-	7	790	c.619G>A	c.(619-621)GAT>AAT	p.D207N	FMOD_uc010pqi.1_Intron|CHI3L1_uc001gzk.1_Missense_Mutation_p.D4N|CHI3L1_uc001gzj.2_Missense_Mutation_p.D207N|CHI3L1_uc001gzl.3_5'Flank	NM_001276	NP_001267	P36222	CH3L1_HUMAN	chitinase 3-like 1 precursor	207	Chitooligosaccharide.				chitin catabolic process	extracellular space|proteinaceous extracellular matrix	cation binding|chitinase activity|extracellular matrix structural constituent|sugar binding			pancreas(1)	1						CCATGAAAATCGTAGGTCATG	0.463													49	55					0	0	1	0	0	
ZC3H11A	9877	broad.mit.edu	37	1	203802956	203802956	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:203802956A>G	uc001hac.2	+	12	1465	c.849A>G	c.(847-849)AGA>AGG	p.R283R	ZC3H11A_uc001had.2_Silent_p.R283R|ZC3H11A_uc001hae.2_Silent_p.R283R|ZC3H11A_uc001haf.2_Silent_p.R283R|ZC3H11A_uc010pqm.1_Silent_p.R229R|ZC3H11A_uc001hag.1_Silent_p.R283R	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	283							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TTACTGAGAGACTGGGGAAAC	0.343													39	159					0	0	1	0	0	
ZC3H11A	9877	broad.mit.edu	37	1	203807179	203807179	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:203807179A>C	uc001hac.2	+	13	1576	c.960A>C	c.(958-960)AAA>AAC	p.K320N	ZC3H11A_uc001had.2_Missense_Mutation_p.K320N|ZC3H11A_uc001hae.2_Missense_Mutation_p.K320N|ZC3H11A_uc001haf.2_Missense_Mutation_p.K320N|ZC3H11A_uc010pqm.1_Missense_Mutation_p.K266N|ZC3H11A_uc001hag.1_Missense_Mutation_p.K320N	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	320							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ACATTGACAAAACACCAAAGA	0.403													21	55					0	0	1	0	0	
ZC3H11A	9877	broad.mit.edu	37	1	203820233	203820233	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:203820233G>A	uc001hac.2	+	19	2771	c.2155G>A	c.(2155-2157)GCA>ACA	p.A719T	ZC3H11A_uc001had.2_Missense_Mutation_p.A719T|ZC3H11A_uc001hae.2_Missense_Mutation_p.A719T|ZC3H11A_uc001haf.2_Missense_Mutation_p.A719T|ZC3H11A_uc010pqm.1_Missense_Mutation_p.A665T	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	719							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TGTGCCTGAAGCAGAAAATCC	0.403													126	109					0	0	1	0	0	
MDM4	4194	broad.mit.edu	37	1	204512067	204512067	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:204512067A>G	uc001hba.2	+	8	829	c.667A>G	c.(667-669)AAT>GAT	p.N223D	MDM4_uc001hbd.1_RNA|MDM4_uc010pqw.1_RNA|MDM4_uc010pqx.1_Missense_Mutation_p.N96D|MDM4_uc001hay.1_Missense_Mutation_p.N223D|MDM4_uc001hbb.2_Missense_Mutation_p.N96D|MDM4_uc010pqy.1_Intron|MDM4_uc001hbc.2_RNA|MDM4_uc009xbe.1_RNA	NM_002393	NP_002384	O15151	MDM4_HUMAN	mouse double minute 4 homolog	223					apoptosis|cell proliferation|cellular response to hypoxia|G0 to G1 transition|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of protein catabolic process|negative regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization	nucleus	enzyme binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(21;0.00146)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.112)|all_epithelial(62;0.118)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;3.15e-47)|all cancers(3;3.56e-32)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|Epithelial(59;0.143)|BRCA - Breast invasive adenocarcinoma(75;0.143)			TTTACAGACAAATCAGGTAAA	0.368			A		GBM|bladder|retinoblastoma								82	89					0	0	1	0	0	
NFASC	23114	broad.mit.edu	37	1	204978776	204978776	+	Silent	SNP	C	T	T	rs150655555	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:204978776C>T	uc001hbj.2	+	28	3709	c.3381C>T	c.(3379-3381)ATC>ATT	p.I1127I	NFASC_uc010pra.1_Silent_p.I1061I|NFASC_uc001hbi.2_Silent_p.I1056I|NFASC_uc010prb.1_Silent_p.I1076I|NFASC_uc010prc.1_Silent_p.I627I|NFASC_uc001hbl.1_Silent_p.I203I|NFASC_uc001hbm.1_Silent_p.I150I|NFASC_uc009xbh.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	1234	Helical; (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TCCTGCTCATCGTCTGTTTCA	0.607													21	74					0	0	1	0	0	
TMEM81	388730	broad.mit.edu	37	1	205053000	205053000	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:205053000G>A	uc001hbt.2	-	1	589	c.449C>T	c.(448-450)GCT>GTT	p.A150V		NM_203376	NP_976310	Q6P7N7	TMM81_HUMAN	transmembrane protein 81 precursor	150	Ig-like.|Extracellular (Potential).					integral to membrane					0	all_cancers(21;0.144)|Breast(84;0.0437)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			ATACTCCTGAGCATATTTAAA	0.478													30	102					0	0	1	0	0	
TMEM81	388730	broad.mit.edu	37	1	205053297	205053297	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:205053297A>G	uc001hbt.2	-	1	292	c.152T>C	c.(151-153)GTC>GCC	p.V51A		NM_203376	NP_976310	Q6P7N7	TMM81_HUMAN	transmembrane protein 81 precursor	51	Extracellular (Potential).					integral to membrane					0	all_cancers(21;0.144)|Breast(84;0.0437)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			GCCACAGGTGACAGTACAGGT	0.517													27	93					0	0	1	0	0	
PM20D1	148811	broad.mit.edu	37	1	205797811	205797811	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:205797811G>T	uc001hdj.2	-	13	1491	c.1446C>A	c.(1444-1446)ATC>ATA	p.I482I	PM20D1_uc009xbr.2_RNA	NM_152491	NP_689704	Q6GTS8	P20D1_HUMAN	peptidase M20 domain containing 1 precursor	482						extracellular region	metal ion binding|peptidase activity			skin(1)	1	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			TCAACTCAAAGATGAATTTCA	0.517													41	33					6.02501e-08	6.36289e-08	1	1	0	
SRGAP2	23380	broad.mit.edu	37	1	206632198	206632198	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:206632198C>T	uc001hdy.2	+	19	2809	c.2476C>T	c.(2476-2478)CGG>TGG	p.R826W	SRGAP2_uc010pru.1_Missense_Mutation_p.R749W	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	913					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					CCTGAAGAATCGGCTGGATAG	0.552													10	38					0	0	1	0	0	
IKBKE	9641	broad.mit.edu	37	1	206665007	206665007	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:206665007G>T	uc001hdz.1	+	18	2128	c.1760G>T	c.(1759-1761)AGA>ATA	p.R587I	IKBKE_uc009xbv.1_Missense_Mutation_p.R587I|IKBKE_uc001hea.1_Missense_Mutation_p.R502I	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	587					DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					TTAGCCAAAAGACTCCTGCAG	0.532													16	72					9.16793e-09	9.77785e-09	1	1	0	
DYRK3	8444	broad.mit.edu	37	1	206821076	206821076	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:206821076G>T	uc001hej.2	+	3	701	c.533G>T	c.(532-534)AGA>ATA	p.R178I	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.R158I	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	178					erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			GCCAAGAAAAGACATGGAGTT	0.408													50	197					1.22102e-19	1.43653e-19	1	1	0	
MAPKAPK2	9261	broad.mit.edu	37	1	206903322	206903322	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:206903322G>T	uc001hem.1	+	5	856	c.570G>T	c.(568-570)GAG>GAT	p.E190D	MAPKAPK2_uc001hel.1_Missense_Mutation_p.E190D	NM_032960	NP_116584	P49137	MAPK2_HUMAN	mitogen-activated protein kinase-activated	190	Protein kinase.				activation of MAPK activity|hormone biosynthetic process|innate immune response|leukotriene biosynthetic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|prostanoid metabolic process|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			TGTAGCCTGAGAATCTCTTAT	0.493													17	78					2.35188e-11	2.57851e-11	1	1	0	
C4BPB	725	broad.mit.edu	37	1	207273175	207273175	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:207273175G>T	uc001hfj.2	+	7	790	c.660G>T	c.(658-660)GAG>GAT	p.E220D	C4BPB_uc001hfi.2_Missense_Mutation_p.E219D|C4BPB_uc001hfk.2_Missense_Mutation_p.E219D|C4BPB_uc001hfl.2_Missense_Mutation_p.E220D|C4BPB_uc009xcd.2_Missense_Mutation_p.E271D|C4BPB_uc001hfm.2_Missense_Mutation_p.E220D	NM_001017365	NP_001017365	P20851	C4BPB_HUMAN	complement component 4 binding protein, beta	220					blood coagulation|complement activation, classical pathway|innate immune response	extracellular region				ovary(1)	1						AAGCCATGGAGAACTTTATGC	0.393													76	58					1.58458e-29	1.93341e-29	1	1	0	
CD55	1604	broad.mit.edu	37	1	207495903	207495903	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:207495903T>C	uc001hfq.3	+	2	571	c.277T>C	c.(277-279)TTC>CTC	p.F93L	CD55_uc001hfp.3_Missense_Mutation_p.F93L|CD55_uc001hfr.3_Missense_Mutation_p.F93L|CD55_uc010psf.1_RNA|CD55_uc009xcf.2_Missense_Mutation_p.F93L|CD55_uc009xce.2_Missense_Mutation_p.F93L	NM_000574	NP_000565	P08174	DAF_HUMAN	decay accelerating factor for complement isoform	93	Sushi 1.				complement activation, classical pathway|elevation of cytosolic calcium ion concentration|innate immune response|respiratory burst	anchored to membrane|extracellular region|integral to plasma membrane|membrane raft|soluble fraction	receptor activity			ovary(1)	1					Chloramphenicol(DB00446)	TATTGAAGAGTTCTGCAATCG	0.348													17	62					0	0	1	0	0	
CR2	1380	broad.mit.edu	37	1	207642169	207642169	+	Missense_Mutation	SNP	G	A	A	rs147633291		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:207642169G>A	uc001hfw.2	+	4	753	c.659G>A	c.(658-660)CGA>CAA	p.R220Q	CR2_uc001hfv.2_Missense_Mutation_p.R220Q|CR2_uc009xch.2_Missense_Mutation_p.R220Q|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	220	Sushi 4.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TCTCTAGGACGATTTCCCAAT	0.393													30	102					0	0	1	0	0	
CR2	1380	broad.mit.edu	37	1	207648237	207648237	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:207648237C>A	uc001hfw.2	+	13	2309	c.2215C>A	c.(2215-2217)CTA>ATA	p.L739I	CR2_uc001hfv.2_Missense_Mutation_p.L798I|CR2_uc009xch.2_Missense_Mutation_p.L739I	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	739	Sushi 12.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						AGAAAACTTTCTATATGGAAA	0.418													49	167					1.51926e-22	1.8124e-22	1	1	0	
CR2	1380	broad.mit.edu	37	1	207648254	207648254	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:207648254C>A	uc001hfw.2	+	13	2326	c.2232C>A	c.(2230-2232)GTC>GTA	p.V744V	CR2_uc001hfv.2_Silent_p.V803V|CR2_uc009xch.2_Silent_p.V744V	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	744	Sushi 12.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GAAATGAAGTCTCTTATGAAT	0.443													56	169					6.56871e-35	8.10039e-35	1	1	0	
CR1L	1379	broad.mit.edu	37	1	207851610	207851610	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:207851610C>T	uc001hga.3	+	3	466	c.345C>T	c.(343-345)TTC>TTT	p.F115F	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	115	Sushi 2.					cytoplasm|extracellular region|membrane					0						ACATCCAGTTCAGATCCCAAA	0.408													39	51					0	0	1	0	0	
CR1L	1379	broad.mit.edu	37	1	207890813	207890813	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:207890813C>A	uc001hga.3	+	11	1540	c.1419C>A	c.(1417-1419)ATC>ATA	p.I473I	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	473	Sushi 8.					cytoplasm|extracellular region|membrane					0						TTCTAGAAATCTTTTGTCCAA	0.373													75	71					4.79706e-38	5.93708e-38	1	1	0	
MIR29C	407026	broad.mit.edu	37	1	207975264	207975264	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:207975264C>T	hsa-mir-29c|MI0000735	-			c.21C>T			uc001hgr.2_RNA|uc009xcm.1_RNA																	0						CAGGAGAAATCGGTCAGCCTG	0.542													5	6					0	0	1	0	0	
PLXNA2	5362	broad.mit.edu	37	1	208202319	208202319	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:208202319C>A	uc001hgz.2	-	30	6052	c.5294G>T	c.(5293-5295)AGC>ATC	p.S1765I	PLXNA2_uc001hgy.2_Missense_Mutation_p.S35I	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1765	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		GTCCGTGATGCTGCCCTTGTG	0.572													34	86					1.22384e-17	1.42067e-17	1	1	0	
PLXNA2	5362	broad.mit.edu	37	1	208390238	208390238	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:208390238T>G	uc001hgz.2	-	2	1788	c.1030A>C	c.(1030-1032)AAG>CAG	p.K344Q	PLXNA2_uc001hha.3_Missense_Mutation_p.K398Q	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	344	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		TGATACTGCTTCTGCCCTTTG	0.592													41	33					0	0	1	0	0	
TRAF3IP3	80342	broad.mit.edu	37	1	209936186	209936186	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:209936186A>C	uc001hho.2	+	5	812	c.522A>C	c.(520-522)ACA>ACC	p.T174T	TRAF3IP3_uc001hhl.2_Silent_p.T154T|TRAF3IP3_uc001hhm.1_Silent_p.T174T|TRAF3IP3_uc001hhn.2_Silent_p.T154T|TRAF3IP3_uc009xcr.2_Silent_p.T174T	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	174	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		AAGGACCAACAATTAAGAACG	0.473													62	139					0	0	1	0	0	
TRAF3IP3	80342	broad.mit.edu	37	1	209936841	209936841	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:209936841C>T	uc001hho.2	+	8	901	c.611C>T	c.(610-612)GCC>GTC	p.A204V	TRAF3IP3_uc001hhl.2_Missense_Mutation_p.A184V|TRAF3IP3_uc001hhm.1_Missense_Mutation_p.A204V|TRAF3IP3_uc001hhn.2_Missense_Mutation_p.A184V|TRAF3IP3_uc009xcr.2_Missense_Mutation_p.A204V	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	204	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		CCCCAGGAGGCCCTACAAAGG	0.537													13	57					0	0	1	0	0	
C1orf107	27042	broad.mit.edu	37	1	210024594	210024594	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:210024594G>A	uc001hhr.1	+	12	2149	c.2073G>A	c.(2071-2073)CCG>CCA	p.P691P	C1orf107_uc009xcu.1_Silent_p.P406P	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	691					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		ATGAACTGCCGACATATCCAC	0.408													20	68					0	0	1	0	0	
SYT14	255928	broad.mit.edu	37	1	210334179	210334179	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:210334179T>G	uc009xcv.2	+	8	1532	c.1460T>G	c.(1459-1461)TTT>TGT	p.F487C	SYT14_uc001hhs.3_Missense_Mutation_p.F551C|SYT14_uc001hht.3_Missense_Mutation_p.F506C|SYT14_uc001hhu.3_RNA|SYT14_uc010psn.1_Missense_Mutation_p.F532C|SYT14_uc010pso.1_Missense_Mutation_p.F449C|SYT14_uc010psp.1_Missense_Mutation_p.F25C	NM_153262	NP_694994	Q8NB59	SYT14_HUMAN	synaptotagmin XIV isoform 4	487	Cytoplasmic (Potential).|C2 2.					integral to membrane				ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.085)		AAGGAAACTTTTGTCTTTCAA	0.403													33	121					0	0	1	0	0	
SYT14	255928	broad.mit.edu	37	1	210334372	210334372	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:210334372G>A	uc009xcv.2	+	8	1725	c.1653G>A	c.(1651-1653)GCG>GCA	p.A551A	SYT14_uc001hhs.3_Silent_p.A615A|SYT14_uc001hht.3_Silent_p.A570A|SYT14_uc001hhu.3_RNA|SYT14_uc010psn.1_Silent_p.A596A|SYT14_uc010pso.1_Silent_p.A513A|SYT14_uc010psp.1_Silent_p.A89A	NM_153262	NP_694994	Q8NB59	SYT14_HUMAN	synaptotagmin XIV isoform 4	551	Cytoplasmic (Potential).					integral to membrane				ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.085)		GATGGCATGCGTTGCTAGAGT	0.403													19	122					0	0	1	0	0	
KCNH1	3756	broad.mit.edu	37	1	210856661	210856661	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:210856661A>G	uc001hib.2	-	11	3102	c.2932T>C	c.(2932-2934)TCC>CCC	p.S978P	KCNH1_uc001hic.2_Missense_Mutation_p.S951P	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	978	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		GATTCTGGGGACTGTGGCCTC	0.458													33	143					0	0	1	0	0	
KCNH1	3756	broad.mit.edu	37	1	210977369	210977369	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:210977369C>T	uc001hib.2	-	8	1772	c.1602G>A	c.(1600-1602)GAG>GAA	p.E534E	KCNH1_uc001hic.2_Silent_p.E507E	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	534	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CCATTACTCGCTCACTCAATC	0.458													50	60					0	0	1	0	0	
KCNH1	3756	broad.mit.edu	37	1	211093016	211093016	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:211093016C>A	uc001hib.2	-	7	1598	c.1428G>T	c.(1426-1428)GAG>GAT	p.E476D	KCNH1_uc001hic.2_Missense_Mutation_p.E449D	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	476	Extracellular (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		CAAAGATCTTCTCAATGTCTG	0.498													47	180					1.08114e-33	1.32944e-33	1	1	0	
RCOR3	55758	broad.mit.edu	37	1	211451540	211451540	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:211451540C>T	uc001hig.2	+	5	593	c.424C>T	c.(424-426)CGC>TGC	p.R142C	RCOR3_uc010psv.1_RNA|RCOR3_uc001hie.2_Missense_Mutation_p.R200C|RCOR3_uc010psw.1_Missense_Mutation_p.R200C|RCOR3_uc001hif.2_Missense_Mutation_p.R200C	NM_018254	NP_060724	Q9P2K3	RCOR3_HUMAN	REST corepressor 3 isoform d	142					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.00961)|all cancers(67;0.0999)|Epithelial(68;0.171)		TTTGATGGATCGCCAGGCTCG	0.363													47	177					0	0	1	0	0	
RD3	343035	broad.mit.edu	37	1	211654646	211654646	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:211654646G>A	uc001him.2	-	2	1276	c.112C>T	c.(112-114)CGA>TGA	p.R38*	RD3_uc001hin.2_RNA|RD3_uc009xda.2_Intron	NM_183059	NP_898882	Q7Z3Z2	RD3_HUMAN	retinal degeneration 3	38	Potential.				response to stimulus|visual perception					ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.00284)|all cancers(67;0.0279)|Epithelial(68;0.0689)		TCAGCCTCTCGCATCTGCCCC	0.642													69	58					0	0	1	0	0	
LPGAT1	9926	broad.mit.edu	37	1	211956643	211956643	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:211956643T>G	uc001hiu.2	-	5	1468	c.655A>C	c.(655-657)AAA>CAA	p.K219Q	LPGAT1_uc001hiv.2_Missense_Mutation_p.K219Q	NM_014873	NP_055688	Q92604	LGAT1_HUMAN	lysophosphatidylglycerol acyltransferase 1	219					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.00773)|all cancers(67;0.0765)|Epithelial(68;0.114)		AAAATAATTTTTGTTGCCCCA	0.398													33	67					0	0	1	0	0	
PPP2R5A	5525	broad.mit.edu	37	1	212515594	212515594	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:212515594G>A	uc001hjb.2	+	4	1119	c.545G>A	c.(544-546)CGA>CAA	p.R182Q	PPP2R5A_uc010ptd.1_Missense_Mutation_p.R123Q	NM_006243	NP_006234	Q15172	2A5A_HUMAN	protein phosphatase 2, regulatory subunit B	182					negative regulation of establishment of protein localization in plasma membrane|negative regulation of lipid kinase activity|positive regulation of protein dephosphorylation|signal transduction	chromosome, centromeric region|cytoplasm|nucleus|protein phosphatase type 2A complex	kinase binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0125)|all cancers(67;0.029)|Epithelial(68;0.154)|GBM - Glioblastoma multiforme(131;0.155)		ATTGCAAAACGATACATTGAT	0.318													26	104					0	0	1	0	0	
RPS6KC1	26750	broad.mit.edu	37	1	213341250	213341250	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:213341250G>A	uc010ptr.1	+	7	1044	c.885G>A	c.(883-885)GAG>GAA	p.E295E	RPS6KC1_uc001hkd.2_Silent_p.E283E|RPS6KC1_uc010pts.1_Silent_p.E114E|RPS6KC1_uc010ptt.1_Silent_p.E114E|RPS6KC1_uc010ptu.1_Silent_p.E114E|RPS6KC1_uc010ptv.1_5'UTR|RPS6KC1_uc001hke.2_Silent_p.E114E	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	295	MIT.				cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		GAACAGCCGAGTACCTCATGC	0.408													38	42					0	0	1	0	0	
PROX1	5629	broad.mit.edu	37	1	214171593	214171593	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214171593C>T	uc001hkh.2	+	2	1987	c.1715C>T	c.(1714-1716)TCG>TTG	p.S572L	PROX1_uc001hkg.1_Missense_Mutation_p.S572L	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	572					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		TCACCTTATTCGGGAAGTGCA	0.448													32	132					0	0	1	0	0	
SMYD2	56950	broad.mit.edu	37	1	214492285	214492285	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214492285G>A	uc010ptx.1	+	5	526	c.493G>A	c.(493-495)GGA>AGA	p.G165R	SMYD2_uc009xdj.2_Missense_Mutation_p.G73R|SMYD2_uc010ptw.1_RNA|SMYD2_uc009xdl.1_RNA	NM_020197	NP_064582	Q9NRG4	SMYD2_HUMAN	SET and MYND domain containing 2	165	SET.				negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of DNA damage response, signal transduction by p53 class mediator|transcription, DNA-dependent	cytosol|nucleus	histone methyltransferase activity (H3-K36 specific)|p53 binding|RNA polymerase II core binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0122)|all cancers(67;0.0209)|GBM - Glioblastoma multiforme(131;0.106)|Epithelial(68;0.144)		CAAGCATCTCGGATTCCCTGA	0.468													36	100					0	0	1	0	0	
PTPN14	5784	broad.mit.edu	37	1	214551407	214551407	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214551407C>A	uc001hkk.1	-	14	2854	c.2583G>T	c.(2581-2583)CAG>CAT	p.Q861H	PTPN14_uc010pty.1_Missense_Mutation_p.Q762H	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	861					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GCGGCCTCTTCTGTGCCTCCA	0.517													18	68					3.32936e-07	3.48551e-07	1	1	0	
CENPF	1063	broad.mit.edu	37	1	214794191	214794191	+	Missense_Mutation	SNP	G	A	A	rs147545168	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214794191G>A	uc001hkm.2	+	6	941	c.767G>A	c.(766-768)CGA>CAA	p.R256Q		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	256	Interaction with SNAP25 and required for localization to the cytoplasm (By similarity).				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		ACTCCAAGTCGATCAACTTTG	0.388													41	149					0	0	1	0	0	
CENPF	1063	broad.mit.edu	37	1	214802406	214802406	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214802406A>C	uc001hkm.2	+	8	1260	c.1086A>C	c.(1084-1086)CAA>CAC	p.Q362H		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	362	Interaction with SNAP25 and required for localization to the cytoplasm (By similarity).|Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		CATTGGAACAAAAACTGAAAA	0.294													20	47					0	0	1	0	0	
CENPF	1063	broad.mit.edu	37	1	214813974	214813974	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214813974G>A	uc001hkm.2	+	12	2467	c.2293G>A	c.(2293-2295)GAT>AAT	p.D765N		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	765	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		GAGCCTCAGGGATCTGCTAAA	0.423													13	55					0	0	1	0	0	
CENPF	1063	broad.mit.edu	37	1	214815908	214815908	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214815908G>T	uc001hkm.2	+	12	4401	c.4227G>T	c.(4225-4227)GAG>GAT	p.E1409D		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AATTGCAAGAGAAATTCTTAT	0.398													12	69					9.05144e-12	9.95561e-12	1	1	0	
CENPF	1063	broad.mit.edu	37	1	214816283	214816283	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214816283G>T	uc001hkm.2	+	12	4776	c.4602G>T	c.(4600-4602)GAG>GAT	p.E1534D		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	1630					cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		TGCAGGAGGAGAATCTGACCA	0.498													29	72					6.38683e-12	7.03806e-12	1	1	0	
CENPF	1063	broad.mit.edu	37	1	214826201	214826201	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214826201A>G	uc001hkm.2	+	16	8365	c.8191A>G	c.(8191-8193)AAA>GAA	p.K2731E		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	2827	Potential.|Sufficient for self-association.|Sufficient for centromere localization.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		ATACCGAGAGAAATTGACTTC	0.343													54	43					0	0	1	0	0	
KCNK2	3776	broad.mit.edu	37	1	215259996	215259996	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:215259996C>T	uc001hkq.2	+	2	501	c.332C>T	c.(331-333)TCG>TTG	p.S111L	KCNK2_uc001hko.2_Missense_Mutation_p.S107L|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Missense_Mutation_p.S96L	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	111							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	TGTGTCAATTCGACGGAGCTG	0.458													118	111					0	0	1	0	0	
KCTD3	51133	broad.mit.edu	37	1	215792499	215792499	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:215792499A>C	uc001hks.2	+	17	2046	c.1752A>C	c.(1750-1752)GTA>GTC	p.V584V	KCTD3_uc001hkt.2_Splice_Site_p.G583_splice|KCTD3_uc010pub.1_Silent_p.V482V|KCTD3_uc009xdn.2_Silent_p.V308V	NM_016121	NP_057205	Q9Y597	KCTD3_HUMAN	potassium channel tetramerisation domain	584						voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(3)	3				all cancers(67;0.0164)|OV - Ovarian serous cystadenocarcinoma(81;0.019)|GBM - Glioblastoma multiforme(131;0.0862)|Epithelial(68;0.13)		CCTAAGATGTAGGTGGTCCAA	0.398													35	126					0	0	1	0	0	
USH2A	7399	broad.mit.edu	37	1	215812516	215812516	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:215812516A>C	uc001hku.1	-	69	15420	c.15033T>G	c.(15031-15033)TAT>TAG	p.Y5011*		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	5011	Fibronectin type-III 35.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TAGAGGTATCATATTGGATCA	0.393										HNSCC(13;0.011)			62	239					0	0	1	0	0	
USH2A	7399	broad.mit.edu	37	1	216108085	216108085	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:216108085T>A	uc001hku.1	-	38	7560	c.7173A>T	c.(7171-7173)GAA>GAT	p.E2391D		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2391	Extracellular (Potential).|Fibronectin type-III 10.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGTTTGTCTCTTCTCCGCTGT	0.333										HNSCC(13;0.011)			68	75					0	0	1	0	0	
USH2A	7399	broad.mit.edu	37	1	216270438	216270438	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:216270438A>C	uc001hku.1	-	22	5132	c.4745T>G	c.(4744-4746)CTT>CGT	p.L1582R		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1582	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGGATCAAAAAGAAAATAAAG	0.249										HNSCC(13;0.011)			7	53					0	0	1	0	0	
USH2A	7399	broad.mit.edu	37	1	216380731	216380731	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:216380731G>T	uc001hku.1	-	16	3587	c.3200C>A	c.(3199-3201)TCT>TAT	p.S1067Y	USH2A_uc001hkv.2_Missense_Mutation_p.S1067Y	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1067	Extracellular (Potential).|Fibronectin type-III 1.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GATAGCAGAAGAACTTTGAAC	0.413										HNSCC(13;0.011)			28	107					7.38237e-10	7.96475e-10	1	1	0	
USH2A	7399	broad.mit.edu	37	1	216420132	216420132	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:216420132A>G	uc001hku.1	-	13	2991	c.2604T>C	c.(2602-2604)TGT>TGC	p.C868C	USH2A_uc001hkv.2_Silent_p.C868C	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	868	Laminin EGF-like 7.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATTTGCAAGGACATTGTCCTG	0.428										HNSCC(13;0.011)			78	242					0	0	1	0	0	
SPATA17	128153	broad.mit.edu	37	1	217947760	217947760	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:217947760C>T	uc001hlh.1	+	7	630	c.604C>T	c.(604-606)CGA>TGA	p.R202*	SPATA17_uc009xdr.1_RNA|SPATA17_uc001hli.2_Nonsense_Mutation_p.R202*	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	202						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		TTTAACACACCGAAGACCTAA	0.443													12	100					0	0	1	0	0	
SPATA17	128153	broad.mit.edu	37	1	217955597	217955597	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:217955597G>A	uc001hlh.1	+	8	831	c.805G>A	c.(805-807)GAT>AAT	p.D269N	SPATA17_uc009xdr.1_RNA|SPATA17_uc001hli.2_Missense_Mutation_p.D269N	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	269						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		AGAACCAATCGATGAGTTAAA	0.468													20	76					0	0	1	0	0	
TGFB2	7042	broad.mit.edu	37	1	218578621	218578621	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:218578621C>T	uc001hlm.2	+	2	1110	c.457C>T	c.(457-459)CGT>TGT	p.R153C	TGFB2_uc001hll.2_Missense_Mutation_p.R181C|TGFB2_uc001hln.2_Missense_Mutation_p.R181C|TGFB2_uc010pue.1_RNA|TGFB2_uc001hlo.2_RNA	NM_003238	NP_003229	P61812	TGFB2_HUMAN	transforming growth factor, beta 2 isoform 2	153					activation of protein kinase activity|angiogenesis|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cardioblast differentiation|catagen|cell cycle arrest|cell death|cell growth|cell-cell junction organization|cell-cell signaling|collagen fibril organization|dopamine biosynthetic process|embryonic digestive tract development|eye development|glial cell migration|hair follicle morphogenesis|hemopoiesis|menstrual cycle phase|negative regulation of alkaline phosphatase activity|negative regulation of cell growth|negative regulation of epithelial cell proliferation|negative regulation of immune response|negative regulation of macrophage cytokine production|neuron development|neutrophil chemotaxis|odontogenesis|pathway-restricted SMAD protein phosphorylation|platelet activation|platelet degranulation|positive regulation of cardioblast differentiation|positive regulation of catagen|positive regulation of cell adhesion mediated by integrin|positive regulation of cell cycle|positive regulation of cell division|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of epithelial cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of heart contraction|positive regulation of immune response|positive regulation of integrin biosynthetic process|positive regulation of neuron apoptosis|positive regulation of ossification|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein secretion|positive regulation of stress-activated MAPK cascade|regulation of transforming growth factor-beta2 production|response to hypoxia|response to progesterone stimulus|salivary gland morphogenesis|SMAD protein import into nucleus|somatic stem cell division|transforming growth factor beta receptor signaling pathway	axon|extracellular matrix|extracellular space|neuronal cell body|platelet alpha granule lumen	beta-amyloid binding|cytokine activity|growth factor activity|protein heterodimerization activity|protein homodimerization activity|receptor signaling protein serine/threonine kinase activity|type II transforming growth factor beta receptor binding				0				all cancers(67;0.0459)|OV - Ovarian serous cystadenocarcinoma(81;0.049)|GBM - Glioblastoma multiforme(131;0.0776)		CAGAGTCTTTCGTTTGCAGAA	0.363													61	258					0	0	1	0	0	
LYPLAL1	127018	broad.mit.edu	37	1	219384943	219384943	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:219384943C>A	uc001hlq.3	+	5	628	c.587C>A	c.(586-588)TCT>TAT	p.S196Y	LYPLAL1_uc001hlr.3_Missense_Mutation_p.S180Y|LYPLAL1_uc001hls.3_Missense_Mutation_p.S72Y|LYPLAL1_uc001hlt.3_Missense_Mutation_p.S72Y|LYPLAL1_uc009xds.2_Missense_Mutation_p.S145Y	NM_138794	NP_620149	Q5VWZ2	LYPL1_HUMAN	lysophospholipase-like 1	196						cytoplasm	lysophospholipase activity				0				GBM - Glioblastoma multiforme(131;0.055)|all cancers(67;0.105)|OV - Ovarian serous cystadenocarcinoma(81;0.116)		ATGTTAAAATCTCTAGGAGTG	0.363													49	135					2.13384e-23	2.55524e-23	1	1	0	
EPRS	2058	broad.mit.edu	37	1	220191809	220191809	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:220191809G>A	uc001hly.1	-	12	1746	c.1476C>T	c.(1474-1476)ATC>ATT	p.I492I	EPRS_uc010puf.1_Silent_p.I243I|EPRS_uc001hlz.1_Silent_p.I492I|EPRS_uc009xdt.1_Intron	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	492	Glutamyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	TAAACGCCCAGATTTTGTCCC	0.378													23	93					0	0	1	0	0	
IARS2	55699	broad.mit.edu	37	1	220279257	220279257	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:220279257G>A	uc001hmc.2	+	9	1195	c.1091G>A	c.(1090-1092)TGC>TAC	p.C364Y		NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	364					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	AATGGTACTTGCAGTCATCCA	0.383													43	124					0	0	1	0	0	
MIR215	406997	broad.mit.edu	37	1	220291244	220291244	+	RNA	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:220291244A>C	hsa-mir-215|MI0000291	-			c.61A>C			IARS2_uc001hmc.2_Intron|uc010pui.1_RNA																	0						ATGACAGACAAACTCAGCTAT	0.373													17	14					0	0	1	0	0	
MIA3	375056	broad.mit.edu	37	1	222802768	222802768	+	Missense_Mutation	SNP	G	A	A	rs76866849	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:222802768G>A	uc001hnl.2	+	4	2215	c.2206G>A	c.(2206-2208)GCT>ACT	p.A736T	MIA3_uc009xea.1_Missense_Mutation_p.A572T	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	736	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		GGATGAAAACGCTATAAATGC	0.438													28	93					0	0	1	0	0	
MIA3	375056	broad.mit.edu	37	1	222803139	222803139	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:222803139G>A	uc001hnl.2	+	4	2586	c.2577G>A	c.(2575-2577)GAG>GAA	p.E859E	MIA3_uc009xea.1_Silent_p.E695E	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	859	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		ACAACCCTGAGGAACATCTGA	0.448													17	55					0	0	1	0	0	
C1orf58	148362	broad.mit.edu	37	1	222906034	222906034	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:222906034A>G	uc001hnq.1	+	13	1609	c.1214A>G	c.(1213-1215)GAC>GGC	p.D405G	C1orf58_uc010put.1_Missense_Mutation_p.D373G|C1orf58_uc010puu.1_3'UTR|C1orf58_uc010puv.1_Missense_Mutation_p.D373G|uc001hnr.1_Intron|uc001hns.1_5'Flank	NM_144695	NP_653296	Q5VW32	BROX_HUMAN	Bro1-domain-containing protein	405	BRO1.					membrane					0				GBM - Glioblastoma multiforme(131;0.0667)		CCTCAAAAGGACACTGGGTGC	0.353													17	47					0	0	1	0	0	
DISP1	84976	broad.mit.edu	37	1	223177427	223177427	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:223177427G>A	uc001hnu.1	+	8	2835	c.2688G>A	c.(2686-2688)GAG>GAA	p.E896E		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	896					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		CTATCATGGAGCTGGAAAGGA	0.493													22	73					0	0	1	0	0	
C1orf65	164127	broad.mit.edu	37	1	223568033	223568033	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:223568033C>T	uc001hoa.2	+	1	1319	c.1216C>T	c.(1216-1218)CGC>TGC	p.R406C		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	406										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GGAAGCCTGTCGCAAGAGGCA	0.627													25	28					0	0	1	0	0	
TP53BP2	7159	broad.mit.edu	37	1	223984003	223984003	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:223984003C>T	uc010pvb.1	-	13	2530	c.2238G>A	c.(2236-2238)GAG>GAA	p.E746E	TP53BP2_uc001hod.2_Silent_p.E617E|TP53BP2_uc010puz.1_5'UTR|TP53BP2_uc010pva.1_Silent_p.E385E	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	740					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		GACCCTCTGGCTCTGTAATAG	0.463													60	169					0	0	1	0	0	
TP53BP2	7159	broad.mit.edu	37	1	223988509	223988509	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:223988509G>T	uc010pvb.1	-	10	1521	c.1229C>A	c.(1228-1230)TCT>TAT	p.S410Y	TP53BP2_uc001hod.2_Missense_Mutation_p.S281Y|TP53BP2_uc010puz.1_5'UTR|TP53BP2_uc010pva.1_Missense_Mutation_p.S49Y	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	404					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		ATGGATTTTAGAGCCTAAAAT	0.383													15	64					1.05317e-09	1.13491e-09	1	1	0	
FBXO28	23219	broad.mit.edu	37	1	224321810	224321810	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:224321810C>T	uc001hoh.2	+	3	453	c.412C>T	c.(412-414)CGT>TGT	p.R138C	FBXO28_uc009xef.2_Missense_Mutation_p.R138C|FBXO28_uc010pvc.1_Intron	NM_015176	NP_055991	Q9NVF7	FBX28_HUMAN	F-box protein 28 isoform a	138										ovary(2)|kidney(2)|lung(1)	5	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.0363)		TTCATTAGCTCGTCATGCAGA	0.353													22	13					0	0	1	0	0	
WDR26	80232	broad.mit.edu	37	1	224586614	224586614	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:224586614G>A	uc001hop.3	-	10	1467	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	WDR26_uc001hoq.3_Silent_p.F351F|WDR26_uc010pvh.1_Silent_p.F74F	NM_025160	NP_079436	Q9H7D7	WDR26_HUMAN	WD repeat domain 26 isoform a	514						cytoplasm|nucleus					0				GBM - Glioblastoma multiforme(131;0.0104)		TAAGGTCCTCGAAGTTATAGC	0.408													53	59					0	0	1	0	0	
LBR	3930	broad.mit.edu	37	1	225599097	225599097	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:225599097C>T	uc001hoy.2	-	9	1273	c.1130G>A	c.(1129-1131)CGA>CAA	p.R377Q	LBR_uc001hoz.2_Missense_Mutation_p.R377Q|LBR_uc001hpa.1_Missense_Mutation_p.R377Q	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	377					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		AGTACCAATTCGAGGGTTTAA	0.388													85	76					0	0	1	0	0	
LIN9	286826	broad.mit.edu	37	1	226421140	226421140	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:226421140G>A	uc001hqa.2	-	13	1688	c.1378C>T	c.(1378-1380)CGG>TGG	p.R460W	LIN9_uc001hqb.2_Missense_Mutation_p.R425W|LIN9_uc001hqc.2_Missense_Mutation_p.R392W|LIN9_uc009xel.1_Missense_Mutation_p.R425W	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	444					cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		TTTGCATGCCGAACAATTTCC	0.443													48	174					0	0	1	0	0	
ITPKB	3707	broad.mit.edu	37	1	226825420	226825420	+	Missense_Mutation	SNP	C	T	T	rs142586470		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:226825420C>T	uc010pvo.1	-	7	2925	c.2585G>A	c.(2584-2586)CGA>CAA	p.R862Q		NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	862							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				TAGAGTGGTTCGAATGGCCTT	0.552											OREG0014299	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	32					0	0	1	0	0	
CDC42BPA	8476	broad.mit.edu	37	1	227219208	227219208	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:227219208G>A	uc001hqr.2	-	27	4404	c.3461C>T	c.(3460-3462)GCT>GTT	p.A1154V	CDC42BPA_uc001hqq.2_Missense_Mutation_p.A453V|CDC42BPA_uc001hqs.2_Missense_Mutation_p.A1073V|CDC42BPA_uc009xes.2_Missense_Mutation_p.A1126V|CDC42BPA_uc010pvs.1_Missense_Mutation_p.A1134V|CDC42BPA_uc001hqp.2_Missense_Mutation_p.A310V|CDC42BPA_uc001hqt.2_Missense_Mutation_p.A32V|CDC42BPA_uc001hqu.1_Missense_Mutation_p.A361V	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	1167	PH.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				GAGCTGGGAAGCTGTGACCTA	0.383													37	119					0	0	1	0	0	
CDC42BPA	8476	broad.mit.edu	37	1	227333279	227333279	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:227333279G>A	uc001hqr.2	-	8	1997	c.1054C>T	c.(1054-1056)CGG>TGG	p.R352W	CDC42BPA_uc001hqs.2_Missense_Mutation_p.R352W|CDC42BPA_uc009xes.2_Missense_Mutation_p.R352W|CDC42BPA_uc010pvs.1_Missense_Mutation_p.R352W	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	352	AGC-kinase C-terminal.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				TCACAGTTCCGAATATTATCC	0.353													42	149					0	0	1	0	0	
CDC42BPA	8476	broad.mit.edu	37	1	227400862	227400862	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:227400862T>G	uc001hqr.2	-	3	1272	c.329A>C	c.(328-330)AAA>ACA	p.K110T	CDC42BPA_uc001hqs.2_Missense_Mutation_p.K110T|CDC42BPA_uc009xes.2_Missense_Mutation_p.K110T|CDC42BPA_uc010pvs.1_Missense_Mutation_p.K110T	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	110	Protein kinase.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				CATTTCCCATTTATTCAATAT	0.239													17	71					0	0	1	0	0	
ZNF678	339500	broad.mit.edu	37	1	227842301	227842301	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:227842301G>T	uc001hqw.1	+	4	695	c.350G>T	c.(349-351)AGA>ATA	p.R117I	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	172					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				GAACATAAGAGAATTCATACT	0.333													28	88					7.38237e-10	7.96475e-10	1	1	0	
ZNF678	339500	broad.mit.edu	37	1	227843225	227843225	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:227843225G>T	uc001hqw.1	+	4	1619	c.1274G>T	c.(1273-1275)AGA>ATA	p.R425I	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	480					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				AGCCATAAGAGAATTCATACT	0.368													14	56					6.72482e-11	7.33162e-11	1	1	0	
ZNF678	339500	broad.mit.edu	37	1	227843477	227843477	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:227843477G>T	uc001hqw.1	+	4	1871	c.1526G>T	c.(1525-1527)AGA>ATA	p.R509I	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	564					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				AAGTATAAGAGAATTTATACT	0.323													39	54					2.45108e-15	2.78995e-15	1	1	0	
WNT3A	89780	broad.mit.edu	37	1	228238550	228238550	+	Silent	SNP	C	T	T	rs141170201		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:228238550C>T	uc001hrq.1	+	3	585	c.507C>T	c.(505-507)TTC>TTT	p.F169F	WNT3A_uc001hrp.1_Silent_p.F169F	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	169					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				CTCGGGAGTTCGCCGACGCCC	0.672													15	45					0	0	1	0	0	
WNT3A	89780	broad.mit.edu	37	1	228238597	228238597	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:228238597G>A	uc001hrq.1	+	3	632	c.554G>A	c.(553-555)CGC>CAC	p.R185H	WNT3A_uc001hrp.1_Missense_Mutation_p.R185H	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	185					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				GCCATGAACCGCCACAACAAC	0.652													17	17					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228402664	228402664	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:228402664G>A	uc009xez.1	+	5	1737	c.1693G>A	c.(1693-1695)GAG>AAG	p.E565K	OBSCN_uc001hsn.2_Missense_Mutation_p.E565K|uc001hsm.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	565	Fibronectin type-III 1.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGGTGCCACGAGGCTGAATG	0.597													11	29					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228434331	228434331	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:228434331C>T	uc009xez.1	+	13	3904	c.3860C>T	c.(3859-3861)ACA>ATA	p.T1287I	OBSCN_uc001hsn.2_Missense_Mutation_p.T1287I	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1287	Ig-like 13.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGGCCCAGACAGAGGTGACG	0.612													69	69					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228451947	228451947	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:228451947G>T	uc009xez.1	+	16	4760	c.4716G>T	c.(4714-4716)AAG>AAT	p.K1572N	OBSCN_uc001hsn.2_Missense_Mutation_p.K1572N	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1572	Ig-like 16.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGACGGGAAGAAACTGAGCT	0.672													58	48					8.4772e-36	1.04649e-35	1	1	0	
OBSCN	84033	broad.mit.edu	37	1	228511096	228511096	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:228511096C>T	uc009xez.1	+	56	15485	c.15441C>T	c.(15439-15441)TGC>TGT	p.C5147C	OBSCN_uc001hsn.2_Silent_p.C5147C	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5147	Ig-like 49.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCTTTGACTGCGTGGTGACAG	0.532													3	18					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228527683	228527683	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:228527683G>A	uc009xez.1	+	70	17340	c.17296G>A	c.(17296-17298)GAC>AAC	p.D5766N	OBSCN_uc001hsn.2_Missense_Mutation_p.D5766N|OBSCN_uc001hsr.1_Missense_Mutation_p.D395N	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5766	DH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CACGGACGACGACGTGGCCAT	0.637													53	55					0	0	1	0	0	
NUP133	55746	broad.mit.edu	37	1	229580703	229580703	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:229580703C>A	uc001htn.2	-	25	3384	c.3292G>T	c.(3292-3294)GAC>TAC	p.D1098Y		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	1098					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				AATATACTGTCTTTAGATACT	0.318													81	95					6.14238e-36	7.58607e-36	1	1	0	
ABCB10	23456	broad.mit.edu	37	1	229653939	229653939	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:229653939A>C	uc001htp.3	-	13	2247	c.2204T>G	c.(2203-2205)TTT>TGT	p.F735C		NM_012089	NP_036221	Q9NRK6	ABCBA_HUMAN	ATP-binding cassette, sub-family B, member 10	735	Mitochondrial intermembrane (Potential).|Mitochondrial matrix (Potential).					integral to mitochondrial membrane|mitochondrial inner membrane	ATP binding|oligopeptide-transporting ATPase activity			breast(2)	2	Breast(184;0.143)|Ovarian(103;0.249)	Prostate(94;0.167)				TGCTGAAATAAAACTTTGTTT	0.318													52	59					0	0	1	0	0	
ABCB10	23456	broad.mit.edu	37	1	229675310	229675310	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:229675310A>C	uc001htp.3	-	6	1275	c.1232T>G	c.(1231-1233)CTT>CGT	p.L411R		NM_012089	NP_036221	Q9NRK6	ABCBA_HUMAN	ATP-binding cassette, sub-family B, member 10	411	Mitochondrial intermembrane (Potential).|Helical; (Potential).|ABC transmembrane type-1.					integral to mitochondrial membrane|mitochondrial inner membrane	ATP binding|oligopeptide-transporting ATPase activity			breast(2)	2	Breast(184;0.143)|Ovarian(103;0.249)	Prostate(94;0.167)				CAGGACAGAAAGCACGATCAG	0.507													69	70					0	0	1	0	0	
ABCB10	23456	broad.mit.edu	37	1	229683424	229683424	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:229683424C>A	uc001htp.3	-	3	786	c.743G>T	c.(742-744)AGA>ATA	p.R248I		NM_012089	NP_036221	Q9NRK6	ABCBA_HUMAN	ATP-binding cassette, sub-family B, member 10	248	Mitochondrial intermembrane (Potential).|Mitochondrial intermembrane (Potential).|ABC transmembrane type-1.					integral to mitochondrial membrane|mitochondrial inner membrane	ATP binding|oligopeptide-transporting ATPase activity			breast(2)	2	Breast(184;0.143)|Ovarian(103;0.249)	Prostate(94;0.167)				TAATGAAGTTCTCAGCCTATT	0.478													15	72					3.45872e-05	3.55908e-05	1	1	0	
PGBD5	79605	broad.mit.edu	37	1	230468774	230468774	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:230468774G>A	uc010pwb.1	-	5	882	c.882C>T	c.(880-882)TGC>TGT	p.C294C	PGBD5_uc001htv.2_Silent_p.C393C	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	294						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		GGAGCAAGCCGCAGCAGTAAA	0.657													7	9					0	0	1	0	0	
COG2	22796	broad.mit.edu	37	1	230795218	230795218	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:230795218C>T	uc001htw.2	+	2	232	c.81C>T	c.(79-81)TTC>TTT	p.F27F	COG2_uc001htx.2_Silent_p.F27F|COG2_uc010pwc.1_5'UTR	NM_007357	NP_031383	Q14746	COG2_HUMAN	component of oligomeric golgi complex 2 isoform	27					Golgi organization|intra-Golgi vesicle-mediated transport|intracellular protein transport|oligosaccharide biosynthetic process|protein glycosylation	Golgi membrane|Golgi stack|Golgi transport complex	protein binding|protein transporter activity				0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				AGGAAGATTTCGATGTCGATC	0.378													60	45					0	0	1	0	0	
COG2	22796	broad.mit.edu	37	1	230805215	230805215	+	Silent	SNP	G	A	A	rs34010781	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:230805215G>A	uc001htw.2	+	7	859	c.708G>A	c.(706-708)ACG>ACA	p.T236T	COG2_uc001htx.2_Silent_p.T236T|COG2_uc010pwc.1_Silent_p.T109T	NM_007357	NP_031383	Q14746	COG2_HUMAN	component of oligomeric golgi complex 2 isoform	236					Golgi organization|intra-Golgi vesicle-mediated transport|intracellular protein transport|oligosaccharide biosynthetic process|protein glycosylation	Golgi membrane|Golgi stack|Golgi transport complex	protein binding|protein transporter activity				0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				CTTACGCCACGATTGACAAGA	0.448													47	47					0	0	1	0	0	
TTC13	79573	broad.mit.edu	37	1	231079614	231079614	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:231079614C>T	uc001huf.3	-	6	641	c.610G>A	c.(610-612)GAA>AAA	p.E204K	TTC13_uc009xfi.2_Intron|TTC13_uc009xfj.2_RNA|TTC13_uc001hug.3_Intron|TTC13_uc009xfk.1_Intron	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a	204							binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		CGGCTCAGTTCGAACAGAGCA	0.418													42	123					0	0	1	0	0	
TRIM67	440730	broad.mit.edu	37	1	231349577	231349577	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:231349577T>C	uc009xfn.1	+	9	2182	c.2140T>C	c.(2140-2142)TGC>CGC	p.C714R		NM_001004342	NP_001004342	Q6ZTA4	TRI67_HUMAN	tripartite motif-containing 67	714	B30.2/SPRY.					cytoplasm|cytoskeleton	zinc ion binding			ovary(2)|breast(1)|kidney(1)	4	Breast(184;0.0871)	all_cancers(173;0.189)|Prostate(94;0.167)				AGGTGGCGTGTGCAAGGGGGC	0.557													96	78					0	0	1	0	0	
C1orf131	128061	broad.mit.edu	37	1	231374789	231374789	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:231374789C>T	uc001hun.1	-	2	301	c.264G>A	c.(262-264)TCG>TCA	p.S88S	C1orf131_uc001hul.2_Silent_p.S88S|C1orf131_uc001hum.2_Silent_p.S88S|C1orf131_uc010pwd.1_Silent_p.S88S|C1orf131_uc001huo.1_Silent_p.S88S|GNPAT_uc009xfo.1_5'Flank|GNPAT_uc001hup.3_5'Flank|GNPAT_uc009xfp.2_5'Flank	NM_152379	NP_689592	Q8NDD1	CA131_HUMAN	hypothetical protein LOC128061	88										central_nervous_system(1)|skin(1)	2	Breast(184;0.0871)	all_cancers(173;0.2)|Prostate(94;0.183)				TGAAGAAGCTCGAAGCGCTCT	0.547													26	74					0	0	1	0	0	
EXOC8	149371	broad.mit.edu	37	1	231471824	231471824	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:231471824G>A	uc001huq.2	-	1	1755	c.1668C>T	c.(1666-1668)CAC>CAT	p.H556H		NM_175876	NP_787072	Q8IYI6	EXOC8_HUMAN	exocyst complex 84-kDa subunit	556					exocytosis|protein transport	growth cone|nucleus	protein binding			skin(1)	1	Breast(184;0.0871)	all_cancers(173;0.151)|Prostate(94;0.183)				CTTTGTAACTGTGCAAGGCCC	0.488													73	65					0	0	1	0	0	
SIPA1L2	57568	broad.mit.edu	37	1	232538143	232538143	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:232538143G>A	uc001hvg.2	-	20	5175	c.5017C>T	c.(5017-5019)CGG>TGG	p.R1673W	SIPA1L2_uc001hvf.2_Missense_Mutation_p.R729W	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1673	Potential.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				ATTACCTTCCGAAGGTCGGTC	0.393													26	29					0	0	1	0	0	
SIPA1L2	57568	broad.mit.edu	37	1	232596771	232596771	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:232596771C>T	uc001hvg.2	-	8	3115	c.2957G>A	c.(2956-2958)CGC>CAC	p.R986H	SIPA1L2_uc001hvf.2_Missense_Mutation_p.R60H	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	986	PDZ.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GCTCCCTTGGCGAAGGCCAGC	0.567													41	139					0	0	1	0	0	
SIPA1L2	57568	broad.mit.edu	37	1	232615380	232615380	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:232615380C>T	uc001hvg.2	-	5	2236	c.2078G>A	c.(2077-2079)AGA>AAA	p.R693K		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	693	Rap-GAP.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				TACCTGTTGTCTGTTGTTGGG	0.483													15	89					0	0	1	0	0	
SIPA1L2	57568	broad.mit.edu	37	1	232649902	232649902	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:232649902G>A	uc001hvg.2	-	1	1342	c.1184C>T	c.(1183-1185)GCC>GTC	p.A395V		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	395					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				ACCCTCATCGGCATCCAGGTT	0.542													131	131					0	0	1	0	0	
KIAA1804	84451	broad.mit.edu	37	1	233482190	233482190	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:233482190T>G	uc001hvt.3	+	2	1069	c.808T>G	c.(808-810)TTG>GTG	p.L270V	KIAA1804_uc001hvs.1_Missense_Mutation_p.L270V	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	270	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				TTCTTTAGTTTTGCTACTTGA	0.353													25	61					0	0	1	0	0	
KIAA1804	84451	broad.mit.edu	37	1	233490640	233490640	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:233490640G>T	uc001hvt.3	+	4	1455	c.1194G>T	c.(1192-1194)TTG>TTT	p.L398F	KIAA1804_uc001hvs.1_Missense_Mutation_p.L398F	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	398	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				TCGAACAGTTGACTGCTATTG	0.383													83	77					5.52753e-52	6.88169e-52	1	1	0	
C1orf31	388753	broad.mit.edu	37	1	234509574	234509574	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:234509574C>A	uc001hwc.2	+	1	146	c.110C>A	c.(109-111)TCT>TAT	p.S37Y	C1orf31_uc001hwb.2_Intron	NM_001012985	NP_001013003	Q5JTJ3	CA031_HUMAN	hypothetical protein LOC388753	37						mitochondrion	cytochrome-c oxidase activity				0	Ovarian(103;0.0339)	all_cancers(173;0.241)|Prostate(94;0.0353)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			ACACCTGTTTCTACAGCGCTT	0.353													15	57					0.00074312	0.000755197	1	1	0	
ARID4B	51742	broad.mit.edu	37	1	235377167	235377167	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:235377167T>G	uc001hwq.2	-	17	2256	c.1758A>C	c.(1756-1758)AAA>AAC	p.K586N	ARID4B_uc001hwr.2_Intron|ARID4B_uc001hws.3_Intron|ARID4B_uc001hwt.3_Missense_Mutation_p.K267N	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	586					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			CTTCATACATTTTTTGATTTT	0.393													131	100					0	0	1	0	0	
ARID4B	51742	broad.mit.edu	37	1	235383751	235383751	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:235383751C>A	uc001hwq.2	-	15	1771	c.1273G>T	c.(1273-1275)GAA>TAA	p.E425*	ARID4B_uc001hwr.2_Nonsense_Mutation_p.E425*|ARID4B_uc001hws.3_Nonsense_Mutation_p.E425*|ARID4B_uc001hwt.3_Nonsense_Mutation_p.E106*	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	425	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			ACTTTTATTTCTTTTACATTT	0.353													17	65					4.75885e-15	5.40475e-15	1	1	0	
LYST	1130	broad.mit.edu	37	1	235887376	235887376	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:235887376G>T	uc001hxj.2	-	39	9442	c.9267C>A	c.(9265-9267)ATC>ATA	p.I3089I	LYST_uc001hxi.2_Silent_p.I313I	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3089					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TTGTTAGAAAGATTTCTACAG	0.378									Chediak-Higashi_syndrome				23	94					1.1804e-14	1.33524e-14	1	1	0	
LYST	1130	broad.mit.edu	37	1	235897198	235897198	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:235897198C>A	uc001hxj.2	-	33	8719	c.8544G>T	c.(8542-8544)AAG>AAT	p.K2848N	LYST_uc001hxi.2_Missense_Mutation_p.K72N	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	2848					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TTTCATATTTCTTTTGTTCCT	0.284									Chediak-Higashi_syndrome				25	90					2.50493e-22	2.98478e-22	1	1	0	
LYST	1130	broad.mit.edu	37	1	235944236	235944236	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:235944236C>A	uc001hxj.2	-	16	5318	c.5143G>T	c.(5143-5145)GAA>TAA	p.E1715*	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1715					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			CGCAAAATTTCTTTATTAATA	0.313									Chediak-Higashi_syndrome				30	32					2.46105e-21	2.91722e-21	1	1	0	
LYST	1130	broad.mit.edu	37	1	235972028	235972028	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:235972028T>G	uc001hxj.2	-	5	2265	c.2090A>C	c.(2089-2091)CAG>CCG	p.Q697P	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.Q697P	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	697	WD 1.				defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			AACAAAGTTCTGATAAGCCTT	0.363									Chediak-Higashi_syndrome				12	55					0	0	1	0	0	
LYST	1130	broad.mit.edu	37	1	235972915	235972915	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:235972915T>C	uc001hxj.2	-	5	1378	c.1203A>G	c.(1201-1203)TTA>TTG	p.L401L	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Silent_p.L401L	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	401					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			AAAGCTCAGGTAAAAGAAGGG	0.418									Chediak-Higashi_syndrome				117	95					0	0	1	0	0	
HEATR1	55127	broad.mit.edu	37	1	236746034	236746034	+	Splice_Site	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:236746034A>C	uc001hyd.1	-	19	2687	c.2562_splice	c.e19+1	p.K854_splice	HEATR1_uc009xgh.1_Splice_Site_p.K97_splice	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28						rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			GGAGGCTTGTACCTTTATGAA	0.338													44	131					0	0	1	0	0	
HEATR1	55127	broad.mit.edu	37	1	236749198	236749198	+	Silent	SNP	G	A	A	rs140333539		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:236749198G>A	uc001hyd.1	-	16	2096	c.1971C>T	c.(1969-1971)ATC>ATT	p.I657I	HEATR1_uc009xgh.1_5'Flank	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	657					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			TTGCTACACCGATTAGTTTTC	0.348													15	60					0	0	1	0	0	
HEATR1	55127	broad.mit.edu	37	1	236754253	236754253	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:236754253A>C	uc001hyd.1	-	12	1549	c.1424T>G	c.(1423-1425)TTT>TGT	p.F475C		NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	475					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			ATCTGCTAAAAACTACAGGGT	0.368													24	30					0	0	1	0	0	
ACTN2	88	broad.mit.edu	37	1	236907933	236907933	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:236907933G>T	uc001hyf.2	+	12	1467	c.1263G>T	c.(1261-1263)GAG>GAT	p.E421D	ACTN2_uc001hyg.2_Missense_Mutation_p.E213D|ACTN2_uc009xgi.1_Missense_Mutation_p.E421D|ACTN2_uc010pxu.1_Missense_Mutation_p.E110D|ACTN2_uc001hyh.2_Missense_Mutation_p.E109D	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	421	Spectrin 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CAGGCAAAGAGCAGATCTTGC	0.577													13	40					7.93312e-07	8.28085e-07	1	1	0	
ACTN2	88	broad.mit.edu	37	1	236908053	236908053	+	Silent	SNP	C	T	T	rs34827377	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:236908053C>T	uc001hyf.2	+	12	1587	c.1383C>T	c.(1381-1383)ATC>ATT	p.I461I	ACTN2_uc001hyg.2_Silent_p.I253I|ACTN2_uc009xgi.1_Silent_p.I461I|ACTN2_uc010pxu.1_Silent_p.I150I|ACTN2_uc001hyh.2_Silent_p.I149I	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	461	Spectrin 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TGGAGCAGATCGCAGCCATCG	0.652													36	35					0	0	1	0	0	
MTR	4548	broad.mit.edu	37	1	236992548	236992548	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:236992548A>C	uc001hyi.3	+	12	1478	c.1055A>C	c.(1054-1056)GAA>GCA	p.E352A	MTR_uc010pxw.1_5'UTR|MTR_uc010pxx.1_Missense_Mutation_p.E352A|MTR_uc010pxy.1_Missense_Mutation_p.E352A|MTR_uc009xgj.1_3'UTR	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	352					nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	ACTGCTTTTGAAGGACATATG	0.393													36	153					0	0	1	0	0	
RYR2	6262	broad.mit.edu	37	1	237617847	237617847	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:237617847G>T	uc001hyl.1	+	15	1569	c.1449G>T	c.(1447-1449)AAG>AAT	p.K483N		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	483	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAGCCCTGAAGAATCGGCAAA	0.433													8	40					0.00448238	0.00453273	1	1	0	
RYR2	6262	broad.mit.edu	37	1	237880516	237880516	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:237880516G>A	uc001hyl.1	+	72	10462	c.10342G>A	c.(10342-10344)GAA>AAA	p.E3448K	RYR2_uc010pxz.1_Missense_Mutation_p.E403K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3448					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TTCTGATCAGGAAAGGAAGAA	0.463													9	14					0	0	1	0	0	
RYR2	6262	broad.mit.edu	37	1	237935360	237935360	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:237935360A>G	uc001hyl.1	+	86	11726	c.11606A>G	c.(11605-11607)AAC>AGC	p.N3869S	RYR2_uc010pya.1_Missense_Mutation_p.N284S	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3869					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACAACTGTCAACATAATTATC	0.338													5	4					0	0	1	0	0	
RYR2	6262	broad.mit.edu	37	1	237947276	237947276	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:237947276C>T	uc001hyl.1	+	90	12384	c.12264C>T	c.(12262-12264)CAC>CAT	p.H4088H	RYR2_uc010pya.1_Silent_p.H503H	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4088					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AACGCTTCCACGAACCTGCGA	0.493													21	40					0	0	1	0	0	
RYR2	6262	broad.mit.edu	37	1	237947421	237947421	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:237947421G>A	uc001hyl.1	+	90	12529	c.12409G>A	c.(12409-12411)GAA>AAA	p.E4137K	RYR2_uc010pya.1_Missense_Mutation_p.E552K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4137					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGGCCGCATCGAAATCATGGG	0.512													29	88					0	0	1	0	0	
RYR2	6262	broad.mit.edu	37	1	237947567	237947567	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:237947567G>T	uc001hyl.1	+	90	12675	c.12555G>T	c.(12553-12555)AAG>AAT	p.K4185N	RYR2_uc010pya.1_Missense_Mutation_p.K600N	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4185					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGAAAGAGAAGATGGAACTCT	0.517													39	125					1.90571e-15	2.17219e-15	1	1	0	
LOC100130331	100130331	broad.mit.edu	37	1	238090214	238090214	+	RNA	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:238090214A>C	uc010pyc.1	+	12		c.1720A>C				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						ATGCCCCCCAAGCTGTGTTTC	0.597													11	17					0	0	1	0	0	
CHRM3	1131	broad.mit.edu	37	1	240071148	240071148	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:240071148C>T	uc001hyp.2	+	5	1176	c.397C>T	c.(397-399)CGA>TGA	p.R133*		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	133	Extracellular (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CATCATGAATCGATGGGCCTT	0.478													32	78					0	0	1	0	0	
FMN2	56776	broad.mit.edu	37	1	240370340	240370340	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:240370340C>T	uc010pyd.1	+	5	2453	c.2228C>T	c.(2227-2229)TCG>TTG	p.S743L	FMN2_uc010pye.1_Missense_Mutation_p.S747L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	743					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GAGGCGAAATCGATACAGACT	0.572													11	48					0	0	1	0	0	
FMN2	56776	broad.mit.edu	37	1	240492436	240492436	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:240492436G>A	uc010pyd.1	+	9	4501	c.4276G>A	c.(4276-4278)GAA>AAA	p.E1426K	FMN2_uc010pye.1_Missense_Mutation_p.E1430K|FMN2_uc010pyf.1_Missense_Mutation_p.E72K|FMN2_uc010pyg.1_Missense_Mutation_p.E22K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1426	FH2.			EN -> TR (in Ref. 3; AAF72885).	actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CAAAGACAAGGAAAATGCCAA	0.438													27	94					0	0	1	0	0	
FMN2	56776	broad.mit.edu	37	1	240492457	240492457	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:240492457A>C	uc010pyd.1	+	9	4522	c.4297A>C	c.(4297-4299)AAA>CAA	p.K1433Q	FMN2_uc010pye.1_Missense_Mutation_p.K1437Q|FMN2_uc010pyf.1_Missense_Mutation_p.K79Q|FMN2_uc010pyg.1_Missense_Mutation_p.K29Q	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1433	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GTCTCTGGACAAACCTGAACA	0.448													39	87					0	0	1	0	0	
FMN2	56776	broad.mit.edu	37	1	240497233	240497233	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:240497233G>A	uc010pyd.1	+	12	4856	c.4631G>A	c.(4630-4632)CGA>CAA	p.R1544Q	FMN2_uc010pye.1_Missense_Mutation_p.R1548Q|FMN2_uc010pyf.1_Missense_Mutation_p.R190Q|FMN2_uc010pyg.1_Missense_Mutation_p.R140Q	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1544	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TATTATCTCCGAAATTTTGAT	0.279													5	32					0	0	1	0	0	
WDR64	128025	broad.mit.edu	37	1	241946608	241946608	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:241946608C>A	uc001hzf.1	+	12	1412	c.1259C>A	c.(1258-1260)TCT>TAT	p.S420Y	WDR64_uc001hzg.1_Missense_Mutation_p.S333Y	NM_144625	NP_653226	B1ANS9	WDR64_HUMAN	WD repeat domain 64	867	WD 12.									skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			CGTGCTCATTCTTTGGAAATT	0.383													13	70					0.00136819	0.00138733	1	1	0	
WDR64	128025	broad.mit.edu	37	1	241951289	241951289	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:241951289C>A	uc001hzf.1	+	13	1626	c.1473C>A	c.(1471-1473)TTC>TTA	p.F491L	WDR64_uc001hzg.1_Missense_Mutation_p.F404L	NM_144625	NP_653226	B1ANS9	WDR64_HUMAN	WD repeat domain 64	938										skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			AAAGCAAGTTCACAGAGAAGC	0.348													53	52					6.14515e-18	7.15987e-18	1	1	0	
PLD5	200150	broad.mit.edu	37	1	242271009	242271009	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:242271009C>T	uc001hzn.1	-	8	1330	c.1203G>A	c.(1201-1203)GCG>GCA	p.A401A	PLD5_uc001hzl.3_Silent_p.A339A|PLD5_uc001hzm.3_Silent_p.A191A|PLD5_uc001hzo.1_Silent_p.A309A			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	401						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			CAGTGCAAATCGCTTTAAGAG	0.373													60	165					0	0	1	0	0	
PLD5	200150	broad.mit.edu	37	1	242271076	242271076	+	Missense_Mutation	SNP	C	T	T	rs147447408		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:242271076C>T	uc001hzn.1	-	8	1263	c.1136G>A	c.(1135-1137)CGA>CAA	p.R379Q	PLD5_uc001hzl.3_Missense_Mutation_p.R317Q|PLD5_uc001hzm.3_Missense_Mutation_p.R169Q|PLD5_uc001hzo.1_Missense_Mutation_p.R287Q			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	379						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			TAAAAGGAGTCGAACTCTAAC	0.363													77	88					0	0	1	0	0	
AKT3	10000	broad.mit.edu	37	1	243778458	243778458	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:243778458T>C	uc001iab.1	-	6	648	c.567A>G	c.(565-567)GAA>GAG	p.E189E	AKT3_uc001hzz.1_Silent_p.E189E	NM_005465	NP_005456	Q9Y243	AKT3_HUMAN	AKT3 kinase isoform 1	189	Protein kinase.				signal transduction	Golgi apparatus|nucleus|plasma membrane	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_cancers(71;0.000307)|all_epithelial(71;0.000374)|all_lung(81;0.0323)|Ovarian(71;0.0619)|all_neural(11;0.101)|Lung NSC(105;0.168)	all_cancers(173;0.0274)	all cancers(7;4.3e-08)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00196)			TGTGTGCCACTTCATCCTACA	0.333													23	22					0	0	1	0	0	
ZNF238	10472	broad.mit.edu	37	1	244217801	244217801	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:244217801C>T	uc001iae.2	+	1	1220	c.698C>T	c.(697-699)TCG>TTG	p.S233L	ZNF238_uc001iad.3_Missense_Mutation_p.S242L|ZNF238_uc001iaf.1_Intron	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	233				KLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHAT AAGKTVASPCSSTESLSQRSVTSVRDSADVDCVLDLSVKSS LSGVENLNSSYFSSQ -> IEHPAQQKGLGGRAWEHVDAIA LRLSRHPPGWRRGRATRHSSWKNSSQPLQLNRVFVPE (in Ref. 1; AAA81368).	negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			GTGAGGGATTCGGCAGATGTT	0.532													46	143					0	0	1	0	0	
C1orf100	200159	broad.mit.edu	37	1	244552296	244552296	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:244552296G>A	uc001iah.2	+	5	482	c.369G>A	c.(367-369)CCG>CCA	p.P123P	C1orf100_uc001iai.2_Silent_p.P91P	NM_001012970	NP_001012988	Q5SVJ3	CA100_HUMAN	hypothetical protein LOC200159	123											0	all_cancers(71;3.94e-05)|all_epithelial(71;0.000138)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|all_lung(81;0.0736)|Ovarian(71;0.0761)|Lung NSC(105;0.103)		all cancers(7;8.19e-08)|GBM - Glioblastoma multiforme(7;2.05e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.000984)			ATCCTCGACCGCTTAATTCAC	0.353													43	126					0	0	1	0	0	
HNRNPU	3192	broad.mit.edu	37	1	245022042	245022042	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:245022042T>C	uc001iaz.1	-	6	1437	c.1219A>G	c.(1219-1221)ACA>GCA	p.T407A	HNRNPU_uc001iaw.1_5'Flank|HNRNPU_uc001iax.1_RNA|HNRNPU_uc001iay.1_Missense_Mutation_p.T131A|HNRNPU_uc001iba.1_Missense_Mutation_p.T388A|HNRNPU_uc001ibb.1_Missense_Mutation_p.T95A	NM_031844	NP_114032	Q00839	HNRPU_HUMAN	heterogeneous nuclear ribonucleoprotein U	407	B30.2/SPRY.				CRD-mediated mRNA stabilization	catalytic step 2 spliceosome|cell surface|CRD-mediated mRNA stability complex|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	ATP binding|DNA binding|protein binding|RNA binding				0	all_cancers(71;6.97e-06)|all_epithelial(71;0.000104)|all_neural(11;0.0269)|Breast(184;0.0545)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0989)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.00868)			GCAAAACATGTAATCACATCA	0.308													27	22					0	0	1	0	0	
EFCAB2	84288	broad.mit.edu	37	1	245245415	245245415	+	Nonsense_Mutation	SNP	C	T	T	rs148124964		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:245245415C>T	uc001ibd.2	+	5	763	c.622C>T	c.(622-624)CGA>TGA	p.R208*	EFCAB2_uc001ibc.2_Nonsense_Mutation_p.R72*|EFCAB2_uc010pyo.1_Nonsense_Mutation_p.R82*|EFCAB2_uc010pyp.1_Nonsense_Mutation_p.R72*|EFCAB2_uc001ibe.2_RNA	NR_026586		Q5VUJ9	EFCB2_HUMAN	RecName: Full=EF-hand calcium-binding domain-containing protein 2;	208							calcium ion binding				0	all_cancers(71;2.93e-06)|all_epithelial(71;2.13e-05)|all_lung(81;0.0337)|Lung NSC(105;0.0472)|Ovarian(71;0.0584)|Breast(184;0.0716)|all_neural(11;0.0982)		OV - Ovarian serous cystadenocarcinoma(106;0.015)			TGGATACATTCGATTCGAAAA	0.259													29	122					0	0	1	0	0	
KIF26B	55083	broad.mit.edu	37	1	245849116	245849116	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:245849116G>A	uc001ibf.1	+	12	3271	c.2831G>A	c.(2830-2832)AGC>AAC	p.S944N	KIF26B_uc001ibg.1_Missense_Mutation_p.S562N|KIF26B_uc001ibh.1_Missense_Mutation_p.S186N	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	944					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GAGCCCAGCAGCTTTCCTTTC	0.617													9	29					0	0	1	0	0	
TFB2M	64216	broad.mit.edu	37	1	246727664	246727664	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:246727664A>C	uc001ibn.2	-	2	511	c.386T>G	c.(385-387)TTT>TGT	p.F129C	CNST_uc001ibo.3_5'Flank|CNST_uc001ibp.2_5'Flank|TFB2M_uc010pys.1_RNA	NM_022366	NP_071761	Q9H5Q4	TFB2M_HUMAN	transcription factor B2, mitochondrial	129					positive regulation of transcription, DNA-dependent|transcription initiation from mitochondrial promoter	mitochondrial nucleoid	protein binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity|transcription cofactor activity			ovary(1)	1	all_cancers(71;4.25e-05)|all_epithelial(71;4.92e-06)|Ovarian(71;0.0254)|all_lung(81;0.0272)|Breast(184;0.0318)|Lung NSC(105;0.0376)		OV - Ovarian serous cystadenocarcinoma(106;0.00358)			ATGTGGAATAAAAGTTTTGTC	0.388													27	51					0	0	1	0	0	
ZNF695	57116	broad.mit.edu	37	1	247162690	247162690	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:247162690C>T	uc009xgu.2	-	3	364	c.219G>A	c.(217-219)GAG>GAA	p.E73E	ZNF695_uc001ica.2_RNA|ZNF695_uc001icb.1_RNA|ZNF695_uc009xgt.1_RNA|ZNF695_uc001ibx.2_Silent_p.E73E|ZNF695_uc001iby.2_RNA|ZNF695_uc001icc.2_Silent_p.E61E	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	73	KRAB.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			CGTTCCAGGGCTCTTTCCTTG	0.463													41	37					0	0	1	0	0	
NLRP3	114548	broad.mit.edu	37	1	247582372	247582372	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:247582372G>A	uc001icr.2	+	3	414	c.276G>A	c.(274-276)CCG>CCA	p.P92P	NLRP3_uc001ics.2_Silent_p.P92P|NLRP3_uc001icu.2_Silent_p.P92P|NLRP3_uc001icw.2_Silent_p.P92P|NLRP3_uc001icv.2_Silent_p.P92P|NLRP3_uc010pyw.1_Silent_p.P90P|NLRP3_uc001ict.1_Silent_p.P90P	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	92	DAPIN.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GAGATGAGCCGAAGTGGGGTG	0.333													7	37					0	0	1	0	0	
NLRP3	114548	broad.mit.edu	37	1	247588450	247588450	+	Missense_Mutation	SNP	G	A	A	rs104895389		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:247588450G>A	uc001icr.2	+	5	1843	c.1705G>A	c.(1705-1707)GAA>AAA	p.E569K	NLRP3_uc001ics.2_Missense_Mutation_p.E569K|NLRP3_uc001icu.2_Missense_Mutation_p.E569K|NLRP3_uc001icw.2_Missense_Mutation_p.E569K|NLRP3_uc001icv.2_Missense_Mutation_p.E569K|NLRP3_uc010pyw.1_Missense_Mutation_p.E567K|NLRP3_uc001ict.1_Missense_Mutation_p.E567K	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	569					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TGGCAAATTCGAAAAGGGGTA	0.463													39	35					0	0	1	0	0	
OR2G3	81469	broad.mit.edu	37	1	247769596	247769596	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:247769596G>A	uc010pyz.1	+	1	709	c.709G>A	c.(709-711)GCC>ACC	p.A237T		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	237	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AAGGCACAAAGCCTTCAGCAC	0.478													33	51					0	0	1	0	0	
OR14A16	284532	broad.mit.edu	37	1	247978292	247978292	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:247978292A>G	uc001idm.1	-	1	740	c.740T>C	c.(739-741)TTA>TCA	p.L247S		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	247	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGAAAGAAATAACACAACCAG	0.438													22	58					0	0	1	0	0	
TRIM58	25893	broad.mit.edu	37	1	248039649	248039649	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248039649T>G	uc001ido.2	+	6	1367	c.1319T>G	c.(1318-1320)TTC>TGC	p.F440C	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	440	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AACCAACTCTTCTCTGGTCTT	0.438													122	133					0	0	1	0	0	
OR2W3	343171	broad.mit.edu	37	1	248059374	248059374	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248059374G>T	uc001idp.1	+	3	755	c.486G>T	c.(484-486)GTG>GTT	p.V162V	OR2W3_uc010pzb.1_Silent_p.V162V	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGTCTCCTGTGACCCTGCGCT	0.647													26	72					8.24728e-16	9.42941e-16	1	1	0	
OR2AK2	391191	broad.mit.edu	37	1	248128684	248128684	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248128684A>C	uc010pzd.1	+	1	51	c.51A>C	c.(49-51)AAA>AAC	p.K17N	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CAGCCATGAAAACAGGAAATC	0.244													39	108					0	0	1	0	0	
OR2L2	26246	broad.mit.edu	37	1	248202363	248202363	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248202363G>A	uc001idw.2	+	1	890	c.794G>A	c.(793-795)CGA>CAA	p.R265Q	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			AGATCCCTGCGATCTCCAACA	0.502													45	140					0	0	1	0	0	
OR2L3	391192	broad.mit.edu	37	1	248224049	248224049	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248224049T>C	uc001idx.1	+	1	66	c.66T>C	c.(64-66)ATT>ATC	p.I22I	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CATCAAGAATTGGCCTTTTCC	0.403													268	233					0	0	1	0	0	
OR2L3	391192	broad.mit.edu	37	1	248224853	248224853	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248224853C>T	uc001idx.1	+	1	870	c.870C>T	c.(868-870)AGC>AGT	p.S290S	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TCATCTATAGCCTGAGGAACA	0.498													85	54					0	0	1	0	0	
OR2M4	26245	broad.mit.edu	37	1	248403071	248403071	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248403071C>A	uc010pzh.1	+	1	841	c.841C>A	c.(841-843)CTC>ATC	p.L281I		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	281	Helical; Name=7; (Potential).			LT -> SH (in Ref. 4).	sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTACACTATTCTCACCCCTAT	0.458													64	45					1.12612e-26	1.36447e-26	1	1	0	
OR2T12	127064	broad.mit.edu	37	1	248458301	248458301	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248458301C>T	uc010pzj.1	-	1	580	c.580G>A	c.(580-582)GAA>AAA	p.E194K		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	194	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			ATGGCGTTTTCGAAGACTGAA	0.537													26	117					0	0	1	0	0	
OR2M7	391196	broad.mit.edu	37	1	248486997	248486997	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248486997G>T	uc010pzk.1	-	1	874	c.874C>A	c.(874-876)CTC>ATC	p.L292I		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTGTTGCGGAGGCTATAAATG	0.433													35	79					4.3181e-19	5.06354e-19	1	1	0	
OR2T1	26696	broad.mit.edu	37	1	248569654	248569654	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248569654A>G	uc010pzm.1	+	1	359	c.359A>G	c.(358-360)GAC>GGC	p.D120G		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	120	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCCTTAATTGACATGATGTAT	0.458													45	204					0	0	1	0	0	
OR2T1	26696	broad.mit.edu	37	1	248570369	248570369	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248570369C>A	uc010pzm.1	+	1	1074	c.1074C>A	c.(1072-1074)TTC>TTA	p.F358L		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	358	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGGGAGGTTCAAGGGTCCTC	0.517													57	182					7.91745e-34	9.74309e-34	1	1	0	
OR2G6	391211	broad.mit.edu	37	1	248684964	248684964	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248684964A>G	uc001ien.1	+	1	17	c.17A>G	c.(16-18)AAC>AGC	p.N6S		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GAAACCAACAACAGCTCTGAA	0.403													34	152					0	0	1	0	0	
OR2G6	391211	broad.mit.edu	37	1	248685634	248685634	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248685634A>C	uc001ien.1	+	1	687	c.687A>C	c.(685-687)AAA>AAC	p.K229N		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TAAGGATAAAATCAGCTGCGG	0.468													22	105					0	0	1	0	0	
OR14I1	401994	broad.mit.edu	37	1	248845530	248845530	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:248845530C>T	uc001ieu.1	-	1	76	c.76G>A	c.(76-78)GCC>ACC	p.A26T		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	26	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AACAGCCCGGCGTGCAGCACC	0.493													32	50					0	0	1	0	0	
ZMYND11	10771	broad.mit.edu	37	10	267147	267147	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:267147G>A	uc010pzt.1	+	4	717	c.289G>A	c.(289-291)GAA>AAA	p.E97K	ZMYND11_uc001ifk.2_Missense_Mutation_p.E97K|ZMYND11_uc010pzu.1_Missense_Mutation_p.E97K|ZMYND11_uc010pzv.1_Intron|ZMYND11_uc010pzw.1_Intron|ZMYND11_uc001ifm.2_Intron|ZMYND11_uc010pzx.1_Missense_Mutation_p.E97K|ZMYND11_uc001ifn.2_Intron|ZMYND11_uc009xhg.2_Missense_Mutation_p.E80K|ZMYND11_uc009xhh.2_Intron|ZMYND11_uc010pzy.1_Intron	NM_006624	NP_006615	Q15326	ZMY11_HUMAN	zinc finger, MYND domain containing 11 isoform	57					cell cycle|cell proliferation|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(4;1.32e-05)|all_lung(4;3.67e-05)|Lung NSC(4;0.000301)|all_epithelial(10;0.000416)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.132)	Epithelial(11;0.00289)|all cancers(11;0.0108)|Lung(33;0.0689)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CTGGGAAACAGAAAATCATGA	0.348													46	111					0	0	1	0	0	
ZMYND11	10771	broad.mit.edu	37	10	294869	294869	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:294869G>A	uc010pzt.1	+	14	1955	c.1527G>A	c.(1525-1527)AAG>AAA	p.K509K	ZMYND11_uc001ifk.2_Silent_p.K508K|ZMYND11_uc010pzu.1_Silent_p.K509K|ZMYND11_uc010pzv.1_Silent_p.K454K|ZMYND11_uc010pzw.1_Silent_p.K424K|ZMYND11_uc001ifm.2_Silent_p.K455K|ZMYND11_uc010pzx.1_Silent_p.K509K|ZMYND11_uc001ifn.2_Silent_p.K455K|ZMYND11_uc009xhg.2_Silent_p.K492K|ZMYND11_uc009xhh.2_Silent_p.K383K|ZMYND11_uc010pzy.1_Silent_p.K361K	NM_006624	NP_006615	Q15326	ZMY11_HUMAN	zinc finger, MYND domain containing 11 isoform	469	Interaction with human adenovirus E1A.				cell cycle|cell proliferation|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(4;1.32e-05)|all_lung(4;3.67e-05)|Lung NSC(4;0.000301)|all_epithelial(10;0.000416)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.132)	Epithelial(11;0.00289)|all cancers(11;0.0108)|Lung(33;0.0689)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		AAGAAGAAAAGAGACAAGCTG	0.403													20	24					0	0	1	0	0	
DIP2C	22982	broad.mit.edu	37	10	460034	460034	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:460034C>T	uc001ifp.2	-	8	966	c.876G>A	c.(874-876)CCG>CCA	p.P292P	DIP2C_uc009xhj.1_5'UTR	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	292						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		TTGGTTGGTTCGGATCCGGTT	0.527													20	50					0	0	1	0	0	
LARP4B	23185	broad.mit.edu	37	10	871710	871710	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:871710C>T	uc001ifs.1	-	11	1267	c.1226G>A	c.(1225-1227)CGA>CAA	p.R409Q		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	409							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						TTGCCTGCTTCGAGGAGGATA	0.507													8	14					0	0	1	0	0	
LARP4B	23185	broad.mit.edu	37	10	875374	875374	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:875374A>G	uc001ifs.1	-	10	1117	c.1076T>C	c.(1075-1077)ATC>ACC	p.I359T		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	359							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						CTGGGGAGTGATCAGGCTGTA	0.537													20	41					0	0	1	0	0	
LARP4B	23185	broad.mit.edu	37	10	910209	910209	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:910209A>G	uc001ifs.1	-	3	184	c.143T>C	c.(142-144)GTA>GCA	p.V48A		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	48							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						AGTTGCTGGTACCTAGGAAGA	0.428													24	46					0	0	1	0	0	
GTPBP4	23560	broad.mit.edu	37	10	1058589	1058589	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:1058589G>A	uc001ift.2	+	14	1600	c.1529G>A	c.(1528-1530)CGA>CAA	p.R510Q	GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Missense_Mutation_p.R394Q|GTPBP4_uc010qae.1_Missense_Mutation_p.R463Q	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	510					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		AGGATGCCGCGAACTGCTAAG	0.403													13	27					0	0	1	0	0	
WDR37	22884	broad.mit.edu	37	10	1126003	1126003	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:1126003G>A	uc001igf.1	+	4	461	c.288G>A	c.(286-288)GCG>GCA	p.A96A	WDR37_uc001ige.2_Silent_p.A96A|WDR37_uc009xhm.1_Silent_p.A96A|WDR37_uc009xhn.1_RNA|WDR37_uc001igg.1_RNA	NM_014023	NP_054742	Q9Y2I8	WDR37_HUMAN	WD repeat domain 37	96											0		all_epithelial(10;0.0449)|Colorectal(49;0.142)		Epithelial(11;0.134)		AAGGACAAGCGATTGATGGAG	0.378													21	42					0	0	1	0	0	
ADARB2	105	broad.mit.edu	37	10	1405799	1405799	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:1405799G>A	uc009xhq.2	-	3	875	c.501C>T	c.(499-501)TTC>TTT	p.F167F		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	167	DRBM 1.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		CTGTGCCCTCGAACGTGAGCC	0.687													10	13					0	0	1	0	0	
AKR1C4	1109	broad.mit.edu	37	10	5242274	5242274	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:5242274G>A	uc001ihw.2	+	2	248	c.215G>A	c.(214-216)GGC>GAC	p.G72D		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	72					androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	ATTGCAGATGGCAGTGTGAAG	0.413													42	97					0	0	1	0	0	
C10orf18	54906	broad.mit.edu	37	10	5784301	5784301	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:5784301G>A	uc001iij.2	+	14	3194	c.2569G>A	c.(2569-2571)GAA>AAA	p.E857K	C10orf18_uc001iik.2_Intron	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	857										ovary(1)|central_nervous_system(1)	2						GGAGACTAACGAAATTTCCAG	0.438													51	107					0	0	1	0	0	
C10orf18	54906	broad.mit.edu	37	10	5791054	5791054	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:5791054G>A	uc001iij.2	+	15	6295	c.5670G>A	c.(5668-5670)GAG>GAA	p.E1890E	C10orf18_uc001iik.2_Silent_p.E734E	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	1890										ovary(1)|central_nervous_system(1)	2						CAGGCATGGAGACGAGCCTCC	0.547													13	39					0	0	1	0	0	
ANKRD16	54522	broad.mit.edu	37	10	5922312	5922312	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:5922312G>T	uc010qat.1	-	6	1420	c.877C>A	c.(877-879)CTC>ATC	p.L293I	ANKRD16_uc009xie.2_Intron|ANKRD16_uc009xif.2_Missense_Mutation_p.L293I|ANKRD16_uc001iiq.2_Intron	NM_019046	NP_061919	Q6P6B7	ANR16_HUMAN	ankyrin repeat domain 16 isoform a	293	ANK 8.										0						AAGGATAAGAGAGTCTGAATT	0.284													10	22					0.00621372	0.0062719	1	1	0	
SFMBT2	57713	broad.mit.edu	37	10	7326097	7326097	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:7326097C>A	uc009xio.1	-	6	632	c.541G>T	c.(541-543)GGC>TGC	p.G181C	SFMBT2_uc001ijn.1_Missense_Mutation_p.G181C|SFMBT2_uc010qay.1_Missense_Mutation_p.G181C	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	181	MBT 2.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TCTATAGGGCCTTTCCCTCGC	0.373													41	65					4.92203e-23	5.88717e-23	1	1	0	
ITIH5	80760	broad.mit.edu	37	10	7682734	7682734	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:7682734T>G	uc001ijq.2	-	4	463	c.384A>C	c.(382-384)AAA>AAC	p.K128N	ITIH5_uc001ijr.1_Missense_Mutation_p.K128N	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	128	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CTTCTGTGGTTTTATTCCTTT	0.378													37	78					0	0	1	0	0	
ITIH2	3698	broad.mit.edu	37	10	7769791	7769791	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:7769791G>T	uc001ijs.2	+	11	1441	c.1279G>T	c.(1279-1281)GGC>TGC	p.G427C		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	427	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						TCCAACAGTGGGCAAGTGTCA	0.448													14	29					6.31663e-08	6.6657e-08	1	1	0	
ITIH2	3698	broad.mit.edu	37	10	7785224	7785224	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:7785224T>C	uc001ijs.2	+	17	2371	c.2209_splice	c.e17+2	p.G737_splice		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide						hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						CAGAATCAGGtaaaataaaaa	0.333													50	114					0	0	1	0	0	
KIN	22944	broad.mit.edu	37	10	7816807	7816807	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:7816807A>T	uc001ijt.2	-	7	703	c.655T>A	c.(655-657)TCT>ACT	p.S219T	KIN_uc010qaz.1_RNA|KIN_uc009xip.2_Missense_Mutation_p.S219T|KIN_uc010qba.1_Missense_Mutation_p.S113T	NM_012311	NP_036443	O60870	KIN17_HUMAN	HsKin17 protein	219					DNA recombination|DNA repair|DNA replication|interspecies interaction between organisms|mRNA processing	cytoplasm|nuclear matrix	double-stranded DNA binding|RNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GACTTGGAAGATGTTGCTCCG	0.308													36	68					0	0	1	0	0	
ATP5C1	509	broad.mit.edu	37	10	7838094	7838094	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:7838094C>T	uc001iju.2	+	2	145	c.67C>T	c.(67-69)CGA>TGA	p.R23*	ATP5C1_uc010qbb.1_Nonsense_Mutation_p.R23*|ATP5C1_uc009xiq.1_Nonsense_Mutation_p.R23*|ATP5C1_uc010qbc.1_Intron|ATP5C1_uc001ijv.2_Nonsense_Mutation_p.R23*	NM_001001973	NP_001001973	P36542	ATPG_HUMAN	ATP synthase, H+ transporting, mitochondrial F1	23					oxidative phosphorylation|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						GATTCAAGTTCGAAATATGGC	0.224													8	28					0	0	1	0	0	
ATP5C1	509	broad.mit.edu	37	10	7844253	7844253	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:7844253G>A	uc001iju.2	+	7	736	c.658G>A	c.(658-660)GAT>AAT	p.D220N	ATP5C1_uc009xiq.1_Missense_Mutation_p.D220N|ATP5C1_uc010qbc.1_Missense_Mutation_p.D171N|ATP5C1_uc001ijv.2_Missense_Mutation_p.D220N	NM_001001973	NP_001001973	P36542	ATPG_HUMAN	ATP synthase, H+ transporting, mitochondrial F1	220					oxidative phosphorylation|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						TATCTATGACGATATTGATGC	0.383													25	45					0	0	1	0	0	
ATP5C1	509	broad.mit.edu	37	10	7844768	7844768	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:7844768G>A	uc001iju.2	+	8	919	c.841G>A	c.(841-843)GCT>ACT	p.A281T	ATP5C1_uc009xiq.1_Missense_Mutation_p.A281T|ATP5C1_uc010qbc.1_Missense_Mutation_p.A232T|ATP5C1_uc001ijv.2_Missense_Mutation_p.A281T	NM_001001973	NP_001001973	P36542	ATPG_HUMAN	ATP synthase, H+ transporting, mitochondrial F1	281					oxidative phosphorylation|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						TACCCGCCAAGCTGTCATCAC	0.363													44	74					0	0	1	0	0	
TAF3	83860	broad.mit.edu	37	10	7866365	7866365	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:7866365T>C	uc010qbd.1	+	2	251	c.251T>C	c.(250-252)ATT>ACT	p.I84T		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	84					maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						GAAGACTATATTCACAACATT	0.423													64	100					0	0	1	0	0	
GATA3	2625	broad.mit.edu	37	10	8115837	8115837	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:8115837G>A	uc001ika.2	+	6	1740	c.1183G>A	c.(1183-1185)GCC>ACC	p.A395T	GATA3_uc001ijz.2_Missense_Mutation_p.A396T	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	395					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding	p.A395fs*54(1)		breast(17)|ovary(3)|central_nervous_system(2)	22						TAACCCGGCCGCCCTCTCCAG	0.562			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						35	91					0	0	1	0	0	
USP6NL	9712	broad.mit.edu	37	10	11504533	11504533	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:11504533A>G	uc001ikt.3	-	15	2715	c.2394T>C	c.(2392-2394)AGT>AGC	p.S798S	USP6NL_uc001iks.1_Silent_p.S815S	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	798						intracellular	Rab GTPase activator activity				0						ATCCAGATGGACTGGCATCTT	0.537													44	113					0	0	1	0	0	
CDC123	8872	broad.mit.edu	37	10	12280462	12280462	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:12280462T>G	uc001ill.2	+	10	979	c.695T>G	c.(694-696)TTC>TGC	p.F232C	CDC123_uc001ilm.2_Missense_Mutation_p.F244C	NM_006023	NP_006014	O75794	CD123_HUMAN	cell division cycle 123	232					cell cycle arrest|cell division|positive regulation of cell proliferation|regulation of mitotic cell cycle	cytoplasm				central_nervous_system(1)	1						ACAGTTGTGTTCGATATATAC	0.303													13	24					0	0	1	0	0	
CCDC3	83643	broad.mit.edu	37	10	12940464	12940464	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:12940464C>T	uc001ilq.1	-	3	899	c.765G>A	c.(763-765)CCG>CCA	p.P255P	CCDC3_uc009xjb.1_RNA|CCDC3_uc001ilr.2_RNA|CCDC3_uc009xjc.1_RNA	NM_031455	NP_113643	Q9BQI4	CCDC3_HUMAN	coiled-coil domain containing 3 precursor	255						endoplasmic reticulum|extracellular region				ovary(1)	1		Ovarian(717;0.0822)	BRCA - Breast invasive adenocarcinoma(52;0.163)			CATTGATGTGCGGCAGCGCGC	0.672													14	43					0	0	1	0	0	
PHYH	5264	broad.mit.edu	37	10	13336491	13336491	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:13336491C>A	uc001imf.2	-	4	439	c.351G>T	c.(349-351)ATG>ATT	p.M117I	PHYH_uc001ime.2_Missense_Mutation_p.M17I|PHYH_uc001img.2_Missense_Mutation_p.M98I	NM_006214	NP_006205	O14832	PAHX_HUMAN	phytanoyl-CoA 2-hydroxylase isoform a precursor	117					fatty acid alpha-oxidation|nervous system development	peroxisomal matrix	electron carrier activity|L-ascorbic acid binding|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|phytanoyl-CoA dioxygenase activity|protein binding				0		Ovarian(717;0.0448)			Antihemophilic Factor(DB00025)|Vitamin C(DB00126)	CCTTCGTGATCATCTTCTCAC	0.448													31	47					5.45727e-16	6.24559e-16	1	1	0	
BEND7	222389	broad.mit.edu	37	10	13481494	13481494	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:13481494G>A	uc001imm.2	-	9	1382	c.1085C>T	c.(1084-1086)GCT>GTT	p.A362V	BEND7_uc001iml.2_RNA	NM_152751	NP_689964	Q8N7W2	BEND7_HUMAN	BEN domain containing 7 isoform 1	413							protein binding			ovary(1)|breast(1)	2						CCCACCACAAGCACCTGTGga	0.458													10	29					0	0	1	0	0	
FRMD4A	55691	broad.mit.edu	37	10	13735997	13735997	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:13735997C>T	uc001ims.2	-	15	1370	c.1018G>A	c.(1018-1020)GAC>AAC	p.D340N	FRMD4A_uc009xjf.1_Missense_Mutation_p.D340N|FRMD4A_uc001imt.1_Missense_Mutation_p.D373N|FRMD4A_uc001imu.1_Missense_Mutation_p.D356N	NM_018027	NP_060497	Q9P2Q2	FRM4A_HUMAN	FERM domain containing 4A	340						cytoplasm|cytoskeleton	binding			ovary(1)|skin(1)|pancreas(1)	3						TCGGTCAGGTCGATGGCGATC	0.577													25	50					0	0	1	0	0	
SUV39H2	79723	broad.mit.edu	37	10	14938972	14938972	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:14938972C>A	uc001inh.2	+	2	181	c.125C>A	c.(124-126)TCT>TAT	p.S42Y	SUV39H2_uc001ing.2_Missense_Mutation_p.S102Y|SUV39H2_uc001ini.2_Missense_Mutation_p.S42Y|SUV39H2_uc001inj.2_Missense_Mutation_p.S42Y	NM_024670	NP_078946	Q9H5I1	SUV92_HUMAN	suppressor of variegation 3-9 homolog 2	102	Chromo.				cell cycle|cell differentiation|chromatin assembly or disassembly|chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin|chromosome, centromeric region|nucleus	histone methyltransferase activity (H3-K9 specific)|protein binding|zinc ion binding			breast(2)|ovary(1)	3						AATTATTTATCTCAGGTAAAG	0.368													30	59					3.73148e-12	4.12027e-12	1	1	0	
DCLRE1C	64421	broad.mit.edu	37	10	14951273	14951273	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:14951273C>T	uc001inn.2	-	14	1298	c.1213G>A	c.(1213-1215)GTT>ATT	p.V405I	DCLRE1C_uc010qbx.1_Intron|DCLRE1C_uc001ink.2_Missense_Mutation_p.V58I|DCLRE1C_uc001inl.2_Missense_Mutation_p.V285I|DCLRE1C_uc009xji.2_Missense_Mutation_p.V290I|DCLRE1C_uc001inm.2_Missense_Mutation_p.V285I|DCLRE1C_uc001ino.2_Missense_Mutation_p.V290I|DCLRE1C_uc009xjh.2_RNA|DCLRE1C_uc001inp.2_Missense_Mutation_p.V285I|DCLRE1C_uc001inq.2_Missense_Mutation_p.V285I|DCLRE1C_uc001inr.2_Missense_Mutation_p.V290I	NM_001033855	NP_001029027	Q96SD1	DCR1C_HUMAN	artemis protein isoform a	405					DNA recombination	nucleus	5'-3' exonuclease activity|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)	1						GGGTATGGAACTTTGTGCCTT	0.443								Involved_in_tolerance_or_repair_of_DNA_crosslinks|NHEJ					21	43					0	0	1	0	0	
ACBD7	414149	broad.mit.edu	37	10	15060107	15060107	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:15060107T>C	uc010qby.1	-	5	334	c.25A>G	c.(25-27)ACT>GCT	p.T9A				Q8N6N7	ACBD7_HUMAN	SubName: Full=cDNA FLJ52263, highly similar to Artemis protein (EC 3.1.-.-);	Error:Variant_position_missing_in_Q8N6N7_after_alignment							fatty-acyl-CoA binding				0						CAATCTGAAGTCCCCTGTGTA	0.388													48	89					0	0	1	0	0	
NMT2	9397	broad.mit.edu	37	10	15161473	15161473	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:15161473C>A	uc001inz.1	-	9	1123	c.1039G>T	c.(1039-1041)GAT>TAT	p.D347Y	NMT2_uc001ioa.1_Missense_Mutation_p.D334Y|NMT2_uc009xjo.1_Missense_Mutation_p.D347Y|NMT2_uc010qbz.1_Missense_Mutation_p.D159Y	NM_004808	NP_004799	O60551	NMT2_HUMAN	N-myristoyltransferase 2	347					N-terminal protein myristoylation|protein lipoylation	Golgi apparatus|plasma membrane	glycylpeptide N-tetradecanoyltransferase activity			ovary(1)	1						GATTTGATATCTTTTGGTTCC	0.433													28	69					2.41591e-17	2.79654e-17	1	1	0	
FAM171A1	221061	broad.mit.edu	37	10	15255460	15255460	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:15255460G>A	uc001iob.2	-	8	2134	c.2127C>T	c.(2125-2127)TTC>TTT	p.F709F		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	709	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CCAAGGAGACGAACCACGCCC	0.557													31	94					0	0	1	0	0	
FAM171A1	221061	broad.mit.edu	37	10	15258059	15258059	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:15258059C>T	uc001iob.2	-	7	929	c.922G>A	c.(922-924)GCC>ACC	p.A308T		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	308	Helical; (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CCTAAAATGGCCAAAAGAAAC	0.363													18	34					0	0	1	0	0	
ITGA8	8516	broad.mit.edu	37	10	15573138	15573138	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:15573138G>T	uc001ioc.1	-	28	2893	c.2893C>A	c.(2893-2895)CCC>ACC	p.P965T	ITGA8_uc010qcb.1_Missense_Mutation_p.P950T	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	965	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						AGAGCATAGGGATCATTTTTT	0.328													28	73					9.39395e-14	1.05303e-13	1	1	0	
ITGA8	8516	broad.mit.edu	37	10	15600166	15600166	+	Silent	SNP	G	A	A	rs142740699		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:15600166G>A	uc001ioc.1	-	26	2673	c.2673C>T	c.(2671-2673)AGC>AGT	p.S891S	ITGA8_uc010qcb.1_Silent_p.S876S	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	891	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GCAAAAAGGCGCTGAGCTCAG	0.463													23	46					0	0	1	0	0	
ITGA8	8516	broad.mit.edu	37	10	15628612	15628612	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:15628612G>A	uc001ioc.1	-	23	2343	c.2343C>T	c.(2341-2343)ATC>ATT	p.I781I	ITGA8_uc010qcb.1_Silent_p.I766I	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	781	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CTACAGCAGTGATGTTGATTT	0.368													14	42					0	0	1	0	0	
FAM188A	80013	broad.mit.edu	37	10	15821133	15821133	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:15821133T>C	uc001iod.1	-	15	1417	c.1196A>G	c.(1195-1197)TAC>TGC	p.Y399C	FAM188A_uc001ioe.1_Missense_Mutation_p.Y226C	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	399					apoptosis	nucleus	calcium ion binding			ovary(1)	1						CCCTTCTACGTACATGACCTG	0.403													21	37					0	0	1	0	0	
PTER	9317	broad.mit.edu	37	10	16526545	16526545	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:16526545G>T	uc001iog.1	+	3	369	c.162G>T	c.(160-162)ATG>ATT	p.M54I	PTER_uc001ioh.1_Missense_Mutation_p.M54I|PTER_uc001ioi.1_Missense_Mutation_p.M54I|PTER_uc009xjp.1_Missense_Mutation_p.M54I	NM_030664	NP_109589	Q96BW5	PTER_HUMAN	phosphotriesterase related	54					catabolic process		hydrolase activity, acting on ester bonds|zinc ion binding			ovary(2)	2						CTATCGTGATGAAAAATTTAT	0.423													36	50					1.06647e-15	1.21866e-15	1	1	0	
PTER	9317	broad.mit.edu	37	10	16553255	16553255	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:16553255G>A	uc001iog.1	+	6	1257	c.1050G>A	c.(1048-1050)TAG>TAA	p.*350*	PTER_uc001ioh.1_Silent_p.*350*|PTER_uc001ioi.1_Silent_p.*350*|PTER_uc009xjp.1_Silent_p.*303*	NM_030664	NP_109589	Q96BW5	PTER_HUMAN	phosphotriesterase related	350					catabolic process		hydrolase activity, acting on ester bonds|zinc ion binding			ovary(2)	2						CTTTCAAATAGGATGGTTGCT	0.373													35	75					0	0	1	0	0	
CUBN	8029	broad.mit.edu	37	10	16911750	16911750	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:16911750G>A	uc001ioo.2	-	59	9391	c.9339C>T	c.(9337-9339)TGC>TGT	p.C3113C	CUBN_uc009xjq.1_RNA|CUBN_uc009xjr.1_Silent_p.C469C	NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3113	CUB 23.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GCTTGGAACCGCAGAATTTGC	0.478													45	80					0	0	1	0	0	
CUBN	8029	broad.mit.edu	37	10	17024530	17024530	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:17024530A>G	uc001ioo.2	-	31	4700	c.4648T>C	c.(4648-4650)TTG>CTG	p.L1550L		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1550	CUB 10.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GTGAAGTTCAAGAGAACACGA	0.418													29	54					0	0	1	0	0	
CUBN	8029	broad.mit.edu	37	10	17145179	17145179	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:17145179A>G	uc001ioo.2	-	13	1527	c.1475T>C	c.(1474-1476)GTT>GCT	p.V492A		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	492	CUB 1.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AACATAACCAACATCCGGGCT	0.388													30	33					0	0	1	0	0	
CUBN	8029	broad.mit.edu	37	10	17147483	17147483	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:17147483A>G	uc001ioo.2	-	11	1255	c.1203T>C	c.(1201-1203)AGT>AGC	p.S401S		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	401	EGF-like 6.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GACAGGGGTGACTTAGGCAAA	0.438													29	73					0	0	1	0	0	
TRDMT1	1787	broad.mit.edu	37	10	17201203	17201203	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:17201203C>T	uc001iop.2	-	7	533	c.485G>A	c.(484-486)CGA>CAA	p.R162Q	TRDMT1_uc001ioq.2_Missense_Mutation_p.R138Q|TRDMT1_uc001ior.2_Missense_Mutation_p.R116Q|TRDMT1_uc001ios.2_Missense_Mutation_p.R91Q|TRDMT1_uc009xjt.2_Missense_Mutation_p.R81Q|TRDMT1_uc010qcc.1_Missense_Mutation_p.R91Q|TRDMT1_uc010qcd.1_Intron|TRDMT1_uc009xjs.1_Missense_Mutation_p.R79Q|TRDMT1_uc009xju.1_RNA	NM_004412	NP_004403	O14717	TRDMT_HUMAN	tRNA aspartic acid methyltransferase 1 isoform	162					tRNA processing	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|RNA binding			ovary(1)	1						AAGAAAATATCGTAGCCTTGA	0.353													39	75					0	0	1	0	0	
VIM	7431	broad.mit.edu	37	10	17277206	17277206	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:17277206G>T	uc001iou.2	+	7	1460	c.1047G>T	c.(1045-1047)GAG>GAT	p.E349D	VIM_uc001iov.1_Missense_Mutation_p.E349D|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Missense_Mutation_p.E349D|VIM_uc001ioy.1_Intron|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Missense_Mutation_p.E307D|VIM_uc001ipc.1_Missense_Mutation_p.E349D	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	349	Rod.|Coil 2.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						AAATGGAAGAGAACTTTGCCG	0.483													24	69					5.35356e-11	5.83973e-11	1	1	0	
ST8SIA6	338596	broad.mit.edu	37	10	17432535	17432535	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:17432535C>T	uc001ipd.2	-	3	285	c.285G>A	c.(283-285)ACG>ACA	p.T95T	ST8SIA6_uc010qce.1_RNA|uc001ipe.2_Intron|uc001ipf.1_Intron	NM_001004470	NP_001004470	P61647	SIA8F_HUMAN	ST8 alpha-N-acetyl-neuraminide	95	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(1)	1						CTTACCCTTTCGTTTTGTTAG	0.363													39	95					0	0	1	0	0	
MRC1	4360	broad.mit.edu	37	10	17891665	17891665	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:17891665A>C	uc001ipk.2	+	7	1249	c.1146A>C	c.(1144-1146)AAA>AAC	p.K382N		NM_002438	NP_002429	P22897	MRC1_HUMAN	mannose receptor C type 1 precursor	382	Extracellular (Potential).|C-type lectin 2.				receptor-mediated endocytosis	endosome membrane|integral to plasma membrane	mannose binding|receptor activity				0						ATGAGAAAAAAATCCAGAGGG	0.478													56	70					0	0	1	0	0	
MRC1	4360	broad.mit.edu	37	10	18138590	18138590	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:18138590A>C	uc001ipm.2	+	7	1249	c.1146A>C	c.(1144-1146)AAA>AAC	p.K382N		NM_002438	NP_002429	P22897	MRC1_HUMAN	mannose receptor C type 1 precursor	382	Extracellular (Potential).|C-type lectin 2.				receptor-mediated endocytosis	endosome membrane|integral to plasma membrane	mannose binding|receptor activity				0						ATGAGAAAAAAATCCAGAGGG	0.483													5	16					0	0	1	0	0	
SLC39A12	221074	broad.mit.edu	37	10	18280228	18280228	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:18280228A>G	uc001ipo.2	+	8	1691	c.1418A>G	c.(1417-1419)GAC>GGC	p.D473G	SLC39A12_uc001ipn.2_Missense_Mutation_p.D473G|SLC39A12_uc001ipp.2_Missense_Mutation_p.D473G|SLC39A12_uc010qck.1_Missense_Mutation_p.D339G	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	473	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TCACCAAATGACAAGGTATAT	0.308													22	54					0	0	1	0	0	
NSUN6	221078	broad.mit.edu	37	10	18875000	18875000	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:18875000T>G	uc010qcp.1	-	8	1218	c.800A>C	c.(799-801)AAA>ACA	p.K267T		NM_182543	NP_872349	Q8TEA1	NSUN6_HUMAN	NOL1/NOP2/Sun domain family, member 6	267							methyltransferase activity|RNA binding			ovary(2)	2						GTTGAAGATTTTATCCAGTGC	0.313													17	32					0	0	1	0	0	
PLXDC2	84898	broad.mit.edu	37	10	20465940	20465940	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:20465940G>T	uc001iqg.1	+	8	1533	c.896G>T	c.(895-897)AGA>ATA	p.R299I	PLXDC2_uc001iqh.1_Missense_Mutation_p.R250I|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	299	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						GTTCGAAGAAGAACAATTTAT	0.318													33	77					6.04164e-23	7.22422e-23	1	1	0	
NEBL	10529	broad.mit.edu	37	10	21098812	21098812	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:21098812C>T	uc001iqi.2	-	25	2931	c.2534G>A	c.(2533-2535)CGC>CAC	p.R845H	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	845	Linker.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						AGGATCTGTGCGCCAAACTTT	0.383													26	59					0	0	1	0	0	
NEBL	10529	broad.mit.edu	37	10	21177096	21177096	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:21177096G>T	uc001iqi.2	-	4	696	c.299C>A	c.(298-300)TCT>TAT	p.S100Y	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	100	Nebulin 3.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CTTATAAAGAGAATTAGAAAG	0.353													19	43					8.00594e-06	8.28612e-06	1	1	0	
MLLT10	8028	broad.mit.edu	37	10	21906051	21906051	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:21906051A>C	uc001iqs.2	+	8	962	c.614A>C	c.(613-615)AAA>ACA	p.K205T	MLLT10_uc001iqt.2_Missense_Mutation_p.K205T|MLLT10_uc001iqv.2_RNA|MLLT10_uc001iqy.2_Missense_Mutation_p.K205T|MLLT10_uc001ira.2_5'UTR|MLLT10_uc001iqz.2_5'UTR	NM_004641	NP_004632	P55197	AF10_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	205	Self-association.|Interaction with FSTL3.				positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(1)|skin(1)	2						AAAAAGAGCAAACGGGGATCT	0.254			T	MLL|PICALM|CDK6	AL								14	47					0	0	1	0	0	
DNAJC1	64215	broad.mit.edu	37	10	22171227	22171227	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:22171227C>T	uc001irc.2	-	8	1249	c.962G>A	c.(961-963)CGA>CAA	p.R321Q	DNAJC1_uc001ird.2_Missense_Mutation_p.R207Q	NM_022365	NP_071760	Q96KC8	DNJC1_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 1	321	Cytoplasmic (By similarity).				negative regulation of proteolysis|regulation of protein secretion|regulation of transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	ATPase activator activity|DNA binding|heat shock protein binding|unfolded protein binding			lung(1)	1		Breast(68;0.00869)|Prostate(175;0.0181)|Lung SC(717;0.0262)				TTTCTGTGTTCGGTTCCTGTT	0.318													20	45					0	0	1	0	0	
SPAG6	9576	broad.mit.edu	37	10	22680806	22680806	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:22680806C>A	uc001iri.2	+	8	1296	c.1154C>A	c.(1153-1155)TCT>TAT	p.S385Y	SPAG6_uc001irj.2_Missense_Mutation_p.S385Y|SPAG6_uc010qct.1_Missense_Mutation_p.S355Y|SPAG6_uc009xkh.2_Missense_Mutation_p.S363Y	NM_012443	NP_036575	O75602	SPAG6_HUMAN	sperm associated antigen 6 isoform 1	385	ARM 8.				cell projection organization|spermatid development	axoneme|cilium|cytoplasm|flagellum|microtubule	binding			breast(1)	1						GTTCTGCTTTCTTTGTACATG	0.398													13	30					0.0202918	0.020439	1	1	0	
C10orf67	256815	broad.mit.edu	37	10	23611421	23611421	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:23611421G>T	uc010qcx.1	-	3	442	c.376C>A	c.(376-378)CTT>ATT	p.L126I		NM_153714	NP_714925	Q8IYJ2	CJ067_HUMAN	hypothetical protein LOC256815	126											0						TTCAACTGAAGCAATTGTTTG	0.299													16	41					1.15088e-07	1.20949e-07	1	1	0	
KIAA1217	56243	broad.mit.edu	37	10	24832504	24832504	+	Silent	SNP	C	T	T	rs113019857	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:24832504C>T	uc001iru.3	+	19	4708	c.4305C>T	c.(4303-4305)GTC>GTT	p.V1435V	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Silent_p.V1118V|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Silent_p.V271V	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1435					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGGATCCAGTCGTGTGCCTGG	0.453													33	53					0	0	1	0	0	
ARHGAP21	57584	broad.mit.edu	37	10	24874037	24874037	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:24874037T>C	uc001isb.2	-	26	5668	c.5181A>G	c.(5179-5181)GCA>GCG	p.A1727A	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1726	Interaction with CTNNA1.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						TTAACGAAGGTGCTTCTTTCT	0.408													67	112					0	0	1	0	0	
THNSL1	79896	broad.mit.edu	37	10	25312156	25312156	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:25312156C>T	uc001isi.3	+	3	333	c.4C>T	c.(4-6)CTC>TTC	p.L2F	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	2					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	AAAGAGAATGCTCCACTTTAA	0.328													13	39					0	0	1	0	0	
GPR158	57512	broad.mit.edu	37	10	25464659	25464659	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:25464659G>A	uc001isj.2	+	1	370	c.310G>A	c.(310-312)GAG>AAG	p.E104K	LOC100128811_uc010qde.1_Missense_Mutation_p.S98L	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	104	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CGGCCGCTACGAGTTGGCGGG	0.677													21	47					0	0	1	0	0	
GPR158	57512	broad.mit.edu	37	10	25509998	25509998	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:25509998A>G	uc001isj.2	+	2	980	c.920A>G	c.(919-921)GAC>GGC	p.D307G		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	307	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						ATGAAAGTTGACATAAATCTT	0.333													20	45					0	0	1	0	0	
GPR158	57512	broad.mit.edu	37	10	25861601	25861601	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:25861601G>A	uc001isj.2	+	7	1598	c.1538G>A	c.(1537-1539)CGA>CAA	p.R513Q		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	513	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TTTCTTTCACGAACGGCTCAA	0.383													39	84					0	0	1	0	0	
MYO3A	53904	broad.mit.edu	37	10	26385323	26385323	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:26385323T>G	uc001isn.2	+	16	1936	c.1576T>G	c.(1576-1578)TTT>GTT	p.F526V	MYO3A_uc009xko.1_Missense_Mutation_p.F526V|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.F526V	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	526	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AGAAAAAAATTTTCATATTTT	0.318													17	25					0	0	1	0	0	
MYO3A	53904	broad.mit.edu	37	10	26490219	26490219	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:26490219G>T	uc001isn.2	+	33	4931	c.4571G>T	c.(4570-4572)AGA>ATA	p.R1524I	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1524					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GAAAAACGAAGACCAAGGAAA	0.249													5	13					2.7689e-08	2.93819e-08	1	1	0	
ABI1	10006	broad.mit.edu	37	10	27066139	27066139	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27066139C>T	uc001isx.2	-	3	484	c.317G>A	c.(316-318)CGA>CAA	p.R106Q	ABI1_uc001ite.2_Missense_Mutation_p.R106Q|ABI1_uc010qdh.1_Missense_Mutation_p.R106Q|ABI1_uc010qdi.1_Intron|ABI1_uc001isy.2_Missense_Mutation_p.R106Q|ABI1_uc001ita.2_Missense_Mutation_p.R106Q|ABI1_uc001isz.2_Missense_Mutation_p.R106Q|ABI1_uc001itb.2_Missense_Mutation_p.R123Q|ABI1_uc001itc.2_Missense_Mutation_p.R106Q|ABI1_uc010qdj.1_Missense_Mutation_p.R106Q|ABI1_uc001itd.2_Missense_Mutation_p.R106Q|ABI1_uc010qdk.1_Missense_Mutation_p.R106Q|ABI1_uc010qdg.1_5'UTR	NM_005470	NP_005461	Q8IZP0	ABI1_HUMAN	abl-interactor 1 isoform a	106	t-SNARE coiled-coil homology.				actin polymerization or depolymerization|cellular component movement|negative regulation of cell proliferation|peptidyl-tyrosine phosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	cell junction|cytoskeleton|cytosol|endoplasmic reticulum|filopodium|growth cone|lamellipodium|nucleus|soluble fraction|synapse|synaptosome	cytoskeletal protein binding			central_nervous_system(1)	1						AATCTCTCTTCGTGCCACTTT	0.323													12	29					0	0	1	0	0	
ANKRD26	22852	broad.mit.edu	37	10	27323866	27323866	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27323866A>C	uc001ith.2	-	24	3682	c.3510T>G	c.(3508-3510)TTT>TTG	p.F1170L	ANKRD26_uc001itg.2_Missense_Mutation_p.F857L|ANKRD26_uc009xku.1_Missense_Mutation_p.F1171L	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	1170	Potential.					centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						CAATAGCATGAAACTGGTCTT	0.363													56	128					0	0	1	0	0	
ANKRD26	22852	broad.mit.edu	37	10	27335401	27335401	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27335401T>C	uc001ith.2	-	18	2035	c.1863A>G	c.(1861-1863)AAA>AAG	p.K621K	ANKRD26_uc001itg.2_Silent_p.K308K|ANKRD26_uc009xku.1_Silent_p.K622K	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	621						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						TCGAGGTCCGTTTTTCTTTTT	0.378													19	43					0	0	1	0	0	
ANKRD26	22852	broad.mit.edu	37	10	27356125	27356125	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27356125A>C	uc001ith.2	-	10	1340	c.1168T>G	c.(1168-1170)TTG>GTG	p.L390V	ANKRD26_uc001itg.2_Missense_Mutation_p.L109V|ANKRD26_uc009xku.1_Missense_Mutation_p.L390V	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	390						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						ACATAAGTCAAATTGTCATTA	0.318													24	55					0	0	1	0	0	
ANKRD26	22852	broad.mit.edu	37	10	27368089	27368089	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27368089G>T	uc001ith.2	-	7	914	c.742C>A	c.(742-744)CTT>ATT	p.L248I	ANKRD26_uc001itg.2_5'UTR|ANKRD26_uc009xku.1_Missense_Mutation_p.L248I	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	248						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						TTGCCAGAAAGCCTTTAGAAC	0.348													33	59					7.11191e-15	8.05931e-15	1	1	0	
YME1L1	10730	broad.mit.edu	37	10	27411786	27411786	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27411786G>T	uc001iti.2	-	12	1572	c.1390C>A	c.(1390-1392)CTT>ATT	p.L464I	YME1L1_uc001itj.2_Missense_Mutation_p.L407I|YME1L1_uc010qdl.1_Missense_Mutation_p.L374I|YME1L1_uc009xkv.2_Intron	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	464					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						ATTTCAGCAAGAAGTTGATTT	0.343													27	52					3.28513e-13	3.66545e-13	1	1	0	
YME1L1	10730	broad.mit.edu	37	10	27411858	27411858	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27411858A>C	uc001iti.2	-	12	1500	c.1318T>G	c.(1318-1320)TTA>GTA	p.L440V	YME1L1_uc001itj.2_Missense_Mutation_p.L383V|YME1L1_uc010qdl.1_Missense_Mutation_p.L350V|YME1L1_uc009xkv.2_Intron	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	440					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						ACAGAATCTAATTCATCAATA	0.353													7	91					0	0	1	0	0	
MASTL	84930	broad.mit.edu	37	10	27459259	27459259	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27459259A>C	uc001itm.2	+	8	2010	c.1371A>C	c.(1369-1371)AAA>AAC	p.K457N	MASTL_uc001itl.2_Missense_Mutation_p.K457N|MASTL_uc009xkw.1_Missense_Mutation_p.K457N|MASTL_uc009xkx.1_RNA	NM_032844	NP_116233	Q96GX5	GWL_HUMAN	microtubule associated serine/threonine	457	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|mitosis|negative regulation of protein phosphatase type 2A activity|regulation of cell cycle|response to DNA damage stimulus	centrosome|cleavage furrow|nucleus	ATP binding|protein phosphatase 2A binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						CTTGTAAAAAAATTATACAGA	0.348													29	52					0	0	1	0	0	
PTCHD3	374308	broad.mit.edu	37	10	27687698	27687698	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27687698A>G	uc001itu.2	-	4	1947	c.1829T>C	c.(1828-1830)GTT>GCT	p.V610A		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	610	Helical; (Potential).				spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GATGTACAAAACATATATAAA	0.368													30	51					0	0	1	0	0	
PTCHD3	374308	broad.mit.edu	37	10	27702138	27702138	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27702138C>T	uc001itu.2	-	1	1160	c.1042G>A	c.(1042-1044)GAT>AAT	p.D348N		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	348					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GTAAATTGATCGAGCAAATGG	0.522													87	207					0	0	1	0	0	
PTCHD3	374308	broad.mit.edu	37	10	27702944	27702944	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:27702944G>A	uc001itu.2	-	1	354	c.236C>T	c.(235-237)TCG>TTG	p.S79L		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	79					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GTCCAGCATCGACGGCCGGGG	0.716													21	53					0	0	1	0	0	
MKX	283078	broad.mit.edu	37	10	28023641	28023641	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:28023641C>A	uc001ity.3	-	5	807	c.582G>T	c.(580-582)GAG>GAT	p.E194D	MKX_uc001itx.3_Missense_Mutation_p.E194D	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	194					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGACCGAATTCTCACTTTTAA	0.488													30	66					5.45727e-16	6.24559e-16	1	1	0	
ARMC4	55130	broad.mit.edu	37	10	28196681	28196681	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:28196681G>A	uc009xky.2	-	17	2619	c.2521C>T	c.(2521-2523)CGT>TGT	p.R841C	ARMC4_uc010qds.1_Missense_Mutation_p.R366C|ARMC4_uc010qdt.1_Missense_Mutation_p.R533C|ARMC4_uc001itz.2_Missense_Mutation_p.R841C	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	841	ARM 6.						binding			ovary(4)|skin(2)	6						CACAACAAACGAACTCCATCT	0.423													15	51					0	0	1	0	0	
ARMC4	55130	broad.mit.edu	37	10	28274087	28274087	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:28274087C>A	uc009xky.2	-	4	534	c.436G>T	c.(436-438)GAA>TAA	p.E146*	ARMC4_uc010qdt.1_5'Flank|ARMC4_uc001itz.2_Nonsense_Mutation_p.E146*	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	146							binding			ovary(4)|skin(2)	6						ATTGAGTTTTCTTTCATTGTA	0.323													9	18					1.76689e-08	1.87808e-08	1	1	0	
WAC	51322	broad.mit.edu	37	10	28900756	28900756	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:28900756A>C	uc001iuf.2	+	10	1427	c.1342A>C	c.(1342-1344)AGA>CGA	p.R448R	WAC_uc001iud.2_Silent_p.R403R|WAC_uc001iue.2_Silent_p.R138R|WAC_uc001iug.2_Silent_p.R345R|WAC_uc001iuh.2_Silent_p.R400R	NM_016628	NP_057712	Q9BTA9	WAC_HUMAN	WW domain-containing adapter with a coiled-coil	448					cell cycle checkpoint|histone H2B conserved C-terminal lysine ubiquitination|histone monoubiquitination|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nuclear speck	chromatin binding|RNA polymerase II core binding			large_intestine(1)|ovary(1)	2						GTCATCCCCAAGATCATATGT	0.393													38	83					0	0	1	0	0	
WAC	51322	broad.mit.edu	37	10	28905110	28905110	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:28905110G>T	uc001iuf.2	+	12	1650	c.1565G>T	c.(1564-1566)AGA>ATA	p.R522I	WAC_uc001iud.2_Missense_Mutation_p.R477I|WAC_uc001iue.2_Missense_Mutation_p.R212I|WAC_uc001iug.2_Missense_Mutation_p.R419I|WAC_uc001iuh.2_Missense_Mutation_p.R473I	NM_016628	NP_057712	Q9BTA9	WAC_HUMAN	WW domain-containing adapter with a coiled-coil	522					cell cycle checkpoint|histone H2B conserved C-terminal lysine ubiquitination|histone monoubiquitination|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nuclear speck	chromatin binding|RNA polymerase II core binding			large_intestine(1)|ovary(1)	2						AGTAGCCAGAGAAGTCCATCA	0.363													38	92					9.14704e-12	1.00594e-11	1	1	0	
SVIL	6840	broad.mit.edu	37	10	29813568	29813568	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:29813568C>A	uc001iut.1	-	14	3172	c.2419G>T	c.(2419-2421)GAA>TAA	p.E807*	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Nonsense_Mutation_p.E381*	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	807					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				GAATCAGGTTCTCCTTGCTCA	0.458													54	109					1.86277e-20	2.20009e-20	1	1	0	
Unknown	0	broad.mit.edu	37	10	30992545	30992545	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:30992545G>T	uc010qdx.1	+	6	987	c.445G>T	c.(445-447)GAA>TAA	p.E149*						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		GGATTGGACAGAACTGAAAAG	0.493													60	167					3.74213e-36	4.62236e-36	1	1	0	
ZEB1	6935	broad.mit.edu	37	10	31809761	31809761	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:31809761A>G	uc001ivs.3	+	7	1561	c.1498A>G	c.(1498-1500)ACA>GCA	p.T500A	ZEB1_uc001ivr.3_Missense_Mutation_p.T282A|ZEB1_uc010qee.1_Missense_Mutation_p.T282A|ZEB1_uc010qef.1_Missense_Mutation_p.T282A|ZEB1_uc009xlj.1_Missense_Mutation_p.T426A|ZEB1_uc010qeg.1_Missense_Mutation_p.T359A|ZEB1_uc009xlk.1_Missense_Mutation_p.T282A|ZEB1_uc001ivt.3_Missense_Mutation_p.T282A|ZEB1_uc001ivu.3_Missense_Mutation_p.T501A|ZEB1_uc001ivv.3_Missense_Mutation_p.T480A|ZEB1_uc010qeh.1_Missense_Mutation_p.T433A|ZEB1_uc009xlo.1_Missense_Mutation_p.T483A|ZEB1_uc009xlp.2_Missense_Mutation_p.T484A	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	500					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				TCCAGTCGCTACAAACAGTTG	0.373													34	77					0	0	1	0	0	
KIF5B	3799	broad.mit.edu	37	10	32311856	32311856	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:32311856C>T	uc001iwe.3	-	16	2304	c.1834G>A	c.(1834-1836)GAA>AAA	p.E612K		NM_004521	NP_004512	P33176	KINH_HUMAN	kinesin family member 5B	612					stress granule disassembly|vesicle transport along microtubule	kinesin complex|microtubule|perinuclear region of cytoplasm|vesicle	ATP binding|microtubule binding|microtubule motor activity		KIF5B/ALK(4)	lung(4)|ovary(1)	5		Prostate(175;0.0137)				TGTGTGCTTTCTAACTGCTTG	0.378													38	58					0	0	1	0	0	
KIF5B	3799	broad.mit.edu	37	10	32327109	32327109	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:32327109G>T	uc001iwe.3	-	6	950	c.480C>A	c.(478-480)AAC>AAA	p.N160K		NM_004521	NP_004512	P33176	KINH_HUMAN	kinesin family member 5B	160	Kinesin-motor.				stress granule disassembly|vesicle transport along microtubule	kinesin complex|microtubule|perinuclear region of cytoplasm|vesicle	ATP binding|microtubule binding|microtubule motor activity		KIF5B/ALK(4)	lung(4)|ovary(1)	5		Prostate(175;0.0137)				AGGGAACTCGGTTTTTGTCTT	0.259													15	52					4.7546e-09	5.08881e-09	1	1	0	
C10orf68	79741	broad.mit.edu	37	10	33000570	33000570	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:33000570A>C	uc001iwn.3	+	7	875	c.402A>C	c.(400-402)GAA>GAC	p.E134D	C10orf68_uc001iwl.1_Missense_Mutation_p.E142D|C10orf68_uc001iwm.1_Missense_Mutation_p.E110D|C10orf68_uc010qei.1_Missense_Mutation_p.E61D	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	134										skin(2)|ovary(1)	3						AATCAGGTGAAAATCCTATGC	0.323													17	36					0	0	1	0	0	
C10orf68	79741	broad.mit.edu	37	10	33143334	33143334	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:33143334C>T	uc001iwn.3	+	21	2230	c.1757C>T	c.(1756-1758)TCG>TTG	p.S586L	C10orf68_uc001iwl.1_Missense_Mutation_p.S545L|C10orf68_uc001iwm.1_Missense_Mutation_p.S590L|C10orf68_uc010qei.1_Missense_Mutation_p.S562L|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	586										skin(2)|ovary(1)	3						TTAGGGCATTCGAAAGTTGTT	0.279													14	25					0	0	1	0	0	
NRP1	8829	broad.mit.edu	37	10	33545355	33545355	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:33545355G>A	uc001iwx.3	-	5	1226	c.703C>T	c.(703-705)CGA>TGA	p.R235*	NRP1_uc001iwv.3_Nonsense_Mutation_p.R235*|NRP1_uc009xlz.2_Nonsense_Mutation_p.R235*|NRP1_uc001iww.3_Nonsense_Mutation_p.R54*|NRP1_uc001iwy.3_Nonsense_Mutation_p.R235*|NRP1_uc001iwz.2_Nonsense_Mutation_p.R235*|NRP1_uc001ixa.2_Nonsense_Mutation_p.R235*|NRP1_uc001ixb.1_Nonsense_Mutation_p.R235*|NRP1_uc001ixc.1_Nonsense_Mutation_p.R235*	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	235	Extracellular (Potential).|CUB 2.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	GATCGGATTCGACCTGGTGTT	0.488													35	80					0	0	1	0	0	
CREM	1390	broad.mit.edu	37	10	35467886	35467886	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:35467886G>T	uc001iyb.2	+	4	400	c.238G>T	c.(238-240)GAA>TAA	p.E80*	CREM_uc001ixx.2_Nonsense_Mutation_p.E64*|CREM_uc001ixy.2_Intron|CREM_uc001ixz.2_Intron|CREM_uc001iya.2_Nonsense_Mutation_p.E80*|CREM_uc001iyc.2_Nonsense_Mutation_p.E64*|CREM_uc001iyd.2_Nonsense_Mutation_p.E80*|CREM_uc001iye.2_Nonsense_Mutation_p.E80*|CREM_uc001iyf.2_Nonsense_Mutation_p.E50*|CREM_uc001iyg.2_Nonsense_Mutation_p.E50*|CREM_uc001iyh.2_Nonsense_Mutation_p.E25*|CREM_uc001iyi.2_Nonsense_Mutation_p.E25*|CREM_uc001iyj.2_5'UTR|CREM_uc001iyk.2_5'UTR	NM_181571	NP_853549	Q03060	CREM_HUMAN	cAMP responsive element modulator isoform a	129	KID.				cell differentiation|multicellular organismal development|signal transduction|spermatogenesis	nucleus	cAMP response element binding protein binding|protein binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TAAACGTAGAGAAATCCTTTC	0.318													15	23					2.23348e-06	2.32221e-06	1	1	0	
CCNY	219771	broad.mit.edu	37	10	35842060	35842060	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:35842060T>C	uc001iyw.3	+	8	873	c.693T>C	c.(691-693)GCT>GCC	p.A231A	CCNY_uc001iyu.3_Silent_p.A177A|CCNY_uc001iyv.3_Silent_p.A177A|CCNY_uc001iyx.3_Silent_p.A177A|CCNY_uc009xmb.2_Silent_p.A206A|CCNY_uc010qet.1_Silent_p.A98A	NM_145012	NP_659449	Q8ND76	CCNY_HUMAN	cyclin Y isoform 1	231	Cyclin N-terminal.				cell division|G2/M transition of mitotic cell cycle|positive regulation of cyclin-dependent protein kinase activity|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	cyclin-dependent protein kinase regulator activity|protein kinase binding				0						ATGACCAGGCTGTATGGAATG	0.527													32	58					0	0	1	0	0	
ANKRD30A	91074	broad.mit.edu	37	10	37422915	37422915	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:37422915A>G	uc001iza.1	+	5	620	c.521A>G	c.(520-522)GAC>GGC	p.D174G		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	230	ANK 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CAAAATGTTGACGTCTTTGCT	0.383													65	159					0	0	1	0	0	
ANKRD30A	91074	broad.mit.edu	37	10	37454065	37454065	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:37454065A>C	uc001iza.1	+	18	1977	c.1878A>C	c.(1876-1878)GAA>GAC	p.E626D		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	682						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACTATGAAGAAAATTCTTGGG	0.294													25	49					0	0	1	0	0	
ANKRD30A	91074	broad.mit.edu	37	10	37490200	37490200	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:37490200T>C	uc001iza.1	+	31	2747	c.2648T>C	c.(2647-2649)GTA>GCA	p.V883A		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	939						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GATGTGTGTGTACCCAAGGCT	0.303													32	73					0	0	1	0	0	
ZNF248	57209	broad.mit.edu	37	10	38121547	38121547	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:38121547C>T	uc001izd.1	-	6	1235	c.736G>A	c.(736-738)GAA>AAA	p.E246K	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Missense_Mutation_p.E246K	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	246	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTTCCACATTCGTTATATTTA	0.368													37	60					0	0	1	0	0	
ZNF248	57209	broad.mit.edu	37	10	38121740	38121740	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:38121740C>A	uc001izd.1	-	6	1042	c.543G>T	c.(541-543)GAG>GAT	p.E181D	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Missense_Mutation_p.E181D	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	181					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TAGGGATTTTCTCATGCCTAA	0.338													28	48					6.12954e-19	7.17843e-19	1	1	0	
ZNF37B	100129482	broad.mit.edu	37	10	43014647	43014647	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:43014647G>T	uc001jab.3	-	5		c.4553C>A			ZNF37B_uc001jac.3_RNA|ZNF37B_uc001jaa.3_RNA					Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein.												0						ACTTCACACAGAATGATTTTC	0.358													4	10					0.00909568	0.00917068	1	1	0	
ZNF37B	100129482	broad.mit.edu	37	10	43015615	43015615	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:43015615C>T	uc001jab.3	-	5		c.3585G>A			ZNF37B_uc001jac.3_RNA|ZNF37B_uc001jaa.3_RNA					Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein.												0						TGTGTGAATTCTCTGATGTTT	0.408													4	19					0	0	1	0	0	
BMS1	9790	broad.mit.edu	37	10	43316063	43316063	+	Silent	SNP	C	T	T	rs1044443		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:43316063C>T	uc001jaj.2	+	17	3235	c.2877C>T	c.(2875-2877)ATC>ATT	p.I959I		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	959					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						TGTATTATATCGAAGACCACA	0.423													24	62					0	0	1	0	0	
RET	5979	broad.mit.edu	37	10	43608350	43608350	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:43608350C>T	uc001jal.2	+	9	1888	c.1698C>T	c.(1696-1698)CCC>CCT	p.P566P	RET_uc001jak.1_Silent_p.P566P|RET_uc010qez.1_Silent_p.P312P	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	566	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	AGACCTGCCCCGACGGCCACT	0.597		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				7	32					0	0	1	0	0	
ZNF239	8187	broad.mit.edu	37	10	44052344	44052344	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:44052344C>T	uc001jaw.3	-	2	1837	c.1184G>A	c.(1183-1185)AGA>AAA	p.R395K	ZNF239_uc001jax.3_Missense_Mutation_p.R395K|ZNF239_uc009xmj.2_Missense_Mutation_p.R395K|ZNF239_uc009xmk.2_Missense_Mutation_p.R395K	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	395	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						AGTGTGGACTCTGAGATGGAT	0.517													31	46					0	0	1	0	0	
ZNF239	8187	broad.mit.edu	37	10	44053445	44053445	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:44053445G>A	uc001jaw.3	-	2	736	c.83C>T	c.(82-84)TCC>TTC	p.S28F	ZNF239_uc001jax.3_Missense_Mutation_p.S28F|ZNF239_uc009xmj.2_Missense_Mutation_p.S28F|ZNF239_uc009xmk.2_Missense_Mutation_p.S28F	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	28					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						TTGACAAGGGGAAATATCTAG	0.443													31	66					0	0	1	0	0	
ANUBL1	93550	broad.mit.edu	37	10	46121766	46121766	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:46121766A>G	uc001jcp.3	-	7	1747	c.1505T>C	c.(1504-1506)CTA>CCA	p.L502P	ANUBL1_uc001jcl.3_Missense_Mutation_p.L22P|ANUBL1_uc001jcm.3_Missense_Mutation_p.L502P|ANUBL1_uc009xmu.2_Missense_Mutation_p.L428P|ANUBL1_uc001jcn.3_Missense_Mutation_p.L428P|ANUBL1_uc001jco.3_Intron	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	502							zinc ion binding				0						AGAAGGCTGTAGCTTCCCAAA	0.413													52	97					0	0	1	0	0	
FAM35B2	439965	broad.mit.edu	37	10	47416866	47416866	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:47416866C>T	uc010qga.1	+	5	658	c.329C>T	c.(328-330)GCG>GTG	p.A110V	FAM35B2_uc010qfz.1_RNA					SubName: Full=cDNA FLJ59018, highly similar to Protein FAM35A;												0						TGTAGGCCAGCGTTAATGACT	0.348													16	51					0	0	1	0	0	
GDF2	2658	broad.mit.edu	37	10	48414100	48414100	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:48414100G>A	uc001jfa.1	-	2	931	c.768C>T	c.(766-768)GTC>GTT	p.V256V		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	256					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CATTGGAGAAGACAACAAAGA	0.547													30	36					0	0	1	0	0	
FRMPD2	143162	broad.mit.edu	37	10	49444554	49444554	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:49444554T>C	uc001jgi.2	-	9	1071	c.964A>G	c.(964-966)ATG>GTG	p.M322V	FRMPD2_uc001jgh.2_Missense_Mutation_p.M291V|FRMPD2_uc001jgj.2_Missense_Mutation_p.M300V	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	322					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TGTAGTGTCATCGGGGCCTCT	0.557													25	62					0	0	1	0	0	
SLC18A3	6572	broad.mit.edu	37	10	50819126	50819126	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:50819126C>T	uc001jhw.2	+	1	780	c.340C>T	c.(340-342)CGC>TGC	p.R114C	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	114	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						CCTTCGGCCCCGCTACCCTAC	0.662													27	70					0	0	1	0	0	
CHAT	1103	broad.mit.edu	37	10	50830170	50830170	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:50830170A>G	uc001jhz.2	+	5	879	c.726A>G	c.(724-726)GTA>GTG	p.V242V	CHAT_uc001jhv.1_Silent_p.V124V|CHAT_uc001jhx.1_Silent_p.V124V|CHAT_uc001jhy.1_Silent_p.V124V|CHAT_uc001jia.2_Silent_p.V124V|CHAT_uc010qgs.1_Silent_p.V124V	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	242					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	TCTCTGGTGTACTCAGCTACA	0.483													48	107					0	0	1	0	0	
OGDHL	55753	broad.mit.edu	37	10	50953530	50953530	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:50953530G>A	uc001jie.2	-	12	1631	c.1489C>T	c.(1489-1491)CGG>TGG	p.R497W	OGDHL_uc009xog.2_Missense_Mutation_p.R524W|OGDHL_uc010qgt.1_Missense_Mutation_p.R440W|OGDHL_uc010qgu.1_Missense_Mutation_p.R288W|OGDHL_uc009xoh.2_Missense_Mutation_p.R288W	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	497					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TGGCCACGCCGGCGGTAACAG	0.572													16	39					0	0	1	0	0	
MSMB	4477	broad.mit.edu	37	10	51562273	51562273	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:51562273T>C	uc001jiq.2	+	4	250	c.218T>C	c.(217-219)GTT>GCT	p.V73A	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|MSMB_uc001jir.2_Missense_Mutation_p.F38L|NCOA4_uc009xon.2_5'Flank|NCOA4_uc010qhd.1_5'Flank|NCOA4_uc001jis.3_5'Flank|NCOA4_uc010qhe.1_5'Flank|NCOA4_uc010qhf.1_5'Flank	NM_002443	NP_002434	P08118	MSMB_HUMAN	beta-microseminoprotein isoform a precursor	73						extracellular space|nucleus				ovary(2)	2						AATGACAGTGTTTCTACACCT	0.498									Hereditary_Prostate_Cancer				95	187					0	0	1	0	0	
FAM21A	387680	broad.mit.edu	37	10	51829368	51829368	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:51829368A>C	uc001jjb.2	+	3	270	c.188A>C	c.(187-189)AAA>ACA	p.K63T	uc001jiz.1_5'Flank|FAM21A_uc001jja.1_5'UTR|FAM21A_uc010qhi.1_Missense_Mutation_p.K63T|FAM21A_uc010qhj.1_Missense_Mutation_p.K63T	NM_001005751	NP_001005751	Q641Q2	FA21A_HUMAN	hypothetical protein LOC387680	63					retrograde transport, endosome to Golgi	early endosome membrane|WASH complex				ovary(1)	1						GAAATCAAGAAACAAGTGGAC	0.378													53	110					0	0	1	0	0	
SGMS1	259230	broad.mit.edu	37	10	52103662	52103662	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:52103662G>A	uc001jje.2	-	7	1167	c.213C>T	c.(211-213)CAC>CAT	p.H71H	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Silent_p.H71H|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	77					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						CTTCCAAATGGTGCTCCATTT	0.527													25	59					0	0	1	0	0	
PRKG1	5592	broad.mit.edu	37	10	52912940	52912940	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:52912940A>C	uc001jjm.2	+	2	477	c.283A>C	c.(283-285)AAG>CAG	p.K95Q	PRKG1_uc001jjn.2_Missense_Mutation_p.K110Q|PRKG1_uc001jjo.2_Missense_Mutation_p.K110Q|PRKG1_uc010qhp.1_Missense_Mutation_p.K95Q	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	95	Dimerization.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		GGATCTTATAAAGGAAGCTAT	0.458													52	101					0	0	1	0	0	
CSTF2T	23283	broad.mit.edu	37	10	53458833	53458833	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:53458833T>G	uc001jjp.2	-	1	523	c.477A>C	c.(475-477)CGA>CGC	p.R159R	PRKG1_uc001jjm.2_Intron|PRKG1_uc001jjn.2_Intron|PRKG1_uc001jjo.2_Intron	NM_015235	NP_056050	Q9H0L4	CSTFT_HUMAN	cleavage stimulation factor, 3' pre-RNA, subunit	159					mRNA processing	nucleus	nucleotide binding|RNA binding			ovary(1)	1				COAD - Colon adenocarcinoma(2;0.00736)|Colorectal(2;0.00898)|all cancers(4;0.0188)|GBM - Glioblastoma multiforme(4;0.0778)|Epithelial(53;0.122)		GTAACATGTTTCGAGCTTCCT	0.468													72	146					0	0	1	0	0	
PCDH15	65217	broad.mit.edu	37	10	55566762	55566762	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:55566762G>A	uc010qhq.1	-	36	5021	c.4626C>T	c.(4624-4626)AAC>AAT	p.N1542N	PCDH15_uc010qhr.1_Silent_p.N1537N	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ATATATTGCCGTTGATATTAC	0.478										HNSCC(58;0.16)			27	74					0	0	1	0	0	
PCDH15	65217	broad.mit.edu	37	10	55569095	55569095	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:55569095C>T	uc010qhs.1	-	37	5125	c.4730G>A	c.(4729-4731)AGA>AAA	p.R1577K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.R1570K|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTCAAGGCGTCTCTGCCACTC	0.433										HNSCC(58;0.16)			32	51					0	0	1	0	0	
PCDH15	65217	broad.mit.edu	37	10	55569225	55569225	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:55569225T>G	uc010qhs.1	-	37	4995	c.4600A>C	c.(4600-4602)AAA>CAA	p.K1534Q	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.K1527Q|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GCTGGTGGTTTTTCGATAGTT	0.373										HNSCC(58;0.16)			77	140					0	0	1	0	0	
PCDH15	65217	broad.mit.edu	37	10	55582450	55582450	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:55582450C>T	uc001jju.1	-	33	5431	c.5036G>A	c.(5035-5037)AGA>AAA	p.R1679K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.R1676K|PCDH15_uc010qhw.1_Missense_Mutation_p.R1639K|PCDH15_uc010qhx.1_Missense_Mutation_p.R1610K|PCDH15_uc010qhy.1_Missense_Mutation_p.R1686K|PCDH15_uc010qhz.1_Missense_Mutation_p.R1681K|PCDH15_uc010qia.1_Missense_Mutation_p.R1659K|PCDH15_uc010qib.1_Missense_Mutation_p.R1656K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1679	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTCCACAGTTCTTGAAACAGT	0.418										HNSCC(58;0.16)			40	90					0	0	1	0	0	
PCDH15	65217	broad.mit.edu	37	10	55700682	55700682	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:55700682G>T	uc001jju.1	-	24	3571	c.3176C>A	c.(3175-3177)TCT>TAT	p.S1059Y	PCDH15_uc010qhq.1_Missense_Mutation_p.S1064Y|PCDH15_uc010qhr.1_Missense_Mutation_p.S1059Y|PCDH15_uc010qhs.1_Missense_Mutation_p.S1071Y|PCDH15_uc010qht.1_Missense_Mutation_p.S1066Y|PCDH15_uc010qhu.1_Missense_Mutation_p.S1059Y|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.S1059Y|PCDH15_uc010qhw.1_Missense_Mutation_p.S1022Y|PCDH15_uc010qhx.1_Missense_Mutation_p.S988Y|PCDH15_uc010qhy.1_Missense_Mutation_p.S1064Y|PCDH15_uc010qhz.1_Missense_Mutation_p.S1059Y|PCDH15_uc010qia.1_Missense_Mutation_p.S1037Y|PCDH15_uc010qib.1_Missense_Mutation_p.S1037Y	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1059	Cadherin 10.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GGCAGCAGCAGAAATTACACC	0.368										HNSCC(58;0.16)			17	47					3.51602e-12	3.88498e-12	1	1	0	
BICC1	80114	broad.mit.edu	37	10	60548181	60548181	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:60548181C>T	uc001jki.1	+	6	598	c.598C>T	c.(598-600)CGG>TGG	p.R200W		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	200					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						AGTTAGAATTCGGGTAACTAT	0.303													12	38					0	0	1	0	0	
PHYHIPL	84457	broad.mit.edu	37	10	61005148	61005148	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:61005148T>G	uc001jkk.3	+	5	1194	c.928T>G	c.(928-930)TTT>GTT	p.F310V	PHYHIPL_uc001jkl.3_Missense_Mutation_p.F264V|PHYHIPL_uc001jkm.3_Missense_Mutation_p.F284V	NM_032439	NP_115815	Q96FC7	PHIPL_HUMAN	phytanoyl-CoA 2-hydroxylase interacting	310											0						GGATAATAAATTTTTGACCTG	0.413													36	62					0	0	1	0	0	
PHYHIPL	84457	broad.mit.edu	37	10	61005308	61005308	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:61005308A>C	uc001jkk.3	+	5	1354	c.1088A>C	c.(1087-1089)AAA>ACA	p.K363T	PHYHIPL_uc001jkl.3_Missense_Mutation_p.K317T|PHYHIPL_uc001jkm.3_Missense_Mutation_p.K337T	NM_032439	NP_115815	Q96FC7	PHIPL_HUMAN	phytanoyl-CoA 2-hydroxylase interacting	363											0						AATGCAAAGAAAGATCCCAGC	0.448													35	83					0	0	1	0	0	
FAM13C	220965	broad.mit.edu	37	10	61011369	61011369	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:61011369C>A	uc001jkn.2	-	14	1734	c.1600G>T	c.(1600-1602)GAA>TAA	p.E534*	FAM13C_uc001jko.2_Nonsense_Mutation_p.E436*|FAM13C_uc010qid.1_Nonsense_Mutation_p.E450*|FAM13C_uc010qie.1_Nonsense_Mutation_p.E451*|FAM13C_uc010qif.1_Nonsense_Mutation_p.E556*	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	534										ovary(2)	2						TCTTCAAATTCTCTTAAGGCT	0.388													54	143					2.82306e-37	3.49133e-37	1	1	0	
FAM13C	220965	broad.mit.edu	37	10	61062583	61062583	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:61062583T>G	uc001jkn.2	-	6	619	c.485A>C	c.(484-486)GAA>GCA	p.E162A	FAM13C_uc001jko.2_Missense_Mutation_p.E162A|FAM13C_uc010qid.1_Missense_Mutation_p.E79A|FAM13C_uc010qie.1_Missense_Mutation_p.E79A|FAM13C_uc010qif.1_Missense_Mutation_p.E184A|FAM13C_uc001jkp.2_Missense_Mutation_p.E79A	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	162										ovary(2)	2						CTGCCGAGTTTCAAAAGCATC	0.343													33	72					0	0	1	0	0	
CCDC6	8030	broad.mit.edu	37	10	61554295	61554295	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:61554295C>T	uc001jks.3	-	8	1802	c.1166G>A	c.(1165-1167)GGA>GAA	p.G389E		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	389						cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		ATAAGACATTCCAGCTCTAGT	0.433													32	65					0	0	1	0	0	
ANK3	288	broad.mit.edu	37	10	61831943	61831943	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:61831943G>A	uc001jky.2	-	37	8888	c.8696C>T	c.(8695-8697)TCT>TTT	p.S2899F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2899					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTCAGTCACAGACATAAATTC	0.353													22	57					0	0	1	0	0	
ANK3	288	broad.mit.edu	37	10	61832027	61832027	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:61832027G>A	uc001jky.2	-	37	8804	c.8612C>T	c.(8611-8613)TCG>TTG	p.S2871L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2871					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AAGTACATGCGAAAGTTTTTC	0.398													43	65					0	0	1	0	0	
ANK3	288	broad.mit.edu	37	10	61844546	61844546	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:61844546C>T	uc001jky.2	-	32	4080	c.3888G>A	c.(3886-3888)GGG>GGA	p.G1296G	ANK3_uc001jkw.2_Silent_p.G430G|ANK3_uc009xpa.2_Silent_p.G430G|ANK3_uc001jkx.2_Silent_p.G474G|ANK3_uc010qih.1_Silent_p.G1297G|ANK3_uc001jkz.3_Silent_p.G1290G|ANK3_uc001jla.1_Silent_p.G362G|ANK3_uc001jlb.1_Silent_p.G814G|ANK3_uc001jkv.2_5'Flank	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1296					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCGTGGCTAACCCCACAGTTT	0.373													25	69					0	0	1	0	0	
JMJD1C	221037	broad.mit.edu	37	10	64973807	64973807	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:64973807T>G	uc001jmn.2	-	8	2420	c.2120A>C	c.(2119-2121)AAA>ACA	p.K707T	JMJD1C_uc001jml.2_Missense_Mutation_p.K488T|JMJD1C_uc001jmm.2_Missense_Mutation_p.K419T|JMJD1C_uc010qiq.1_Missense_Mutation_p.K525T|JMJD1C_uc009xpi.2_Missense_Mutation_p.K525T|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmp.1_Missense_Mutation_p.K419T	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	707					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					ATGCTCATTTTTATCAATGAT	0.368													43	61					0	0	1	0	0	
SIRT1	23411	broad.mit.edu	37	10	69648688	69648688	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:69648688G>A	uc001jnd.2	+	3	649	c.596G>A	c.(595-597)CGA>CAA	p.R199Q	SIRT1_uc010qis.1_Intron|SIRT1_uc009xpp.2_Missense_Mutation_p.R7Q|SIRT1_uc001jne.2_5'Flank	NM_012238	NP_036370	Q96EB6	SIRT1_HUMAN	sirtuin 1 isoform a	199	Interaction with HIST1H1E.				apoptosis|cell aging|cellular response to hydrogen peroxide|cellular response to starvation|chromatin silencing at rDNA|DNA repair|DNA replication|establishment of chromatin silencing|histone H3 deacetylation|interspecies interaction between organisms|maintenance of chromatin silencing|muscle organ development|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of fat cell differentiation|negative regulation of helicase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine acetylation|peptidyl-lysine deacetylation|positive regulation of anti-apoptosis|positive regulation of chromatin silencing|positive regulation of DNA repair|regulation of apoptosis|regulation of cell proliferation|regulation of endodeoxyribonuclease activity|regulation of protein import into nucleus, translocation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|rRNA processing|transcription, DNA-dependent|triglyceride mobilization|white fat cell differentiation	chromatin silencing complex|cytoplasm|nuclear euchromatin|nuclear heterochromatin|nuclear inner membrane|nucleolus|PML body|rDNA heterochromatin	bHLH transcription factor binding|histone binding|HLH domain binding|identical protein binding|mitogen-activated protein kinase binding|NAD+ binding|NAD-dependent histone deacetylase activity (H3-K9 specific)|p53 binding|protein C-terminus binding|transcription corepressor activity|zinc ion binding				0						ACAGATCCTCGAACAATTCTT	0.368													29	78					0	0	1	0	0	
HERC4	26091	broad.mit.edu	37	10	69700806	69700806	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:69700806A>C	uc001jng.3	-	21	2729	c.2418T>G	c.(2416-2418)ATT>ATG	p.I806M	HERC4_uc009xpq.2_Missense_Mutation_p.I339M|HERC4_uc001jnf.3_RNA|HERC4_uc001jnh.3_Missense_Mutation_p.I798M|HERC4_uc009xpr.2_Intron|HERC4_uc001jni.3_Missense_Mutation_p.I542M	NM_022079	NP_071362	Q5GLZ8	HERC4_HUMAN	hect domain and RLD 4 isoform a	806	HECT.				cell differentiation|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	cytosol	ubiquitin-protein ligase activity			ovary(1)|breast(1)|skin(1)	3						TACAATTATAAATTGCTAAGC	0.328													33	75					0	0	1	0	0	
HERC4	26091	broad.mit.edu	37	10	69793738	69793738	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:69793738A>G	uc001jng.3	-	6	980	c.669T>C	c.(667-669)GGT>GGC	p.G223G	HERC4_uc001jnf.3_RNA|HERC4_uc001jnh.3_Silent_p.G223G|HERC4_uc009xpr.2_Silent_p.G223G|HERC4_uc001jni.3_5'UTR|HERC4_uc001jnj.2_Silent_p.G223G	NM_022079	NP_071362	Q5GLZ8	HERC4_HUMAN	hect domain and RLD 4 isoform a	223	RCC1 5.				cell differentiation|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	cytosol	ubiquitin-protein ligase activity			ovary(1)|breast(1)|skin(1)	3						CATCATTAAGACCTAGCTGAC	0.403													27	43					0	0	1	0	0	
MYPN	84665	broad.mit.edu	37	10	69905258	69905258	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:69905258G>A	uc001jnm.3	+	5	1290	c.1105G>A	c.(1105-1107)GAC>AAC	p.D369N	MYPN_uc001jnl.1_Missense_Mutation_p.D369N|MYPN_uc001jnn.3_Missense_Mutation_p.D94N|MYPN_uc001jno.3_Missense_Mutation_p.D369N|MYPN_uc001jnp.1_Missense_Mutation_p.D369N|MYPN_uc009xps.2_Missense_Mutation_p.D369N|MYPN_uc009xpt.2_Missense_Mutation_p.D369N|MYPN_uc010qit.1_Missense_Mutation_p.D75N|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	369	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						CTCAGAAGGCGACCCTAACAA	0.343													33	64					0	0	1	0	0	
MYPN	84665	broad.mit.edu	37	10	69948801	69948801	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:69948801A>G	uc001jnm.3	+	14	3028	c.2843A>G	c.(2842-2844)GAC>GGC	p.D948G	MYPN_uc001jnn.3_Missense_Mutation_p.D673G|MYPN_uc001jno.3_Missense_Mutation_p.D948G|MYPN_uc009xpt.2_Missense_Mutation_p.D948G|MYPN_uc010qit.1_Missense_Mutation_p.D654G|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	948	Ig-like 3.|Interaction with ACTN.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						CCCATCTTTGACAAGAGACTC	0.453													24	56					0	0	1	0	0	
HNRNPH3	3189	broad.mit.edu	37	10	70099299	70099299	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70099299A>C	uc001jnw.3	+	6	855	c.626A>C	c.(625-627)AAT>ACT	p.N209T	HNRNPH3_uc001jnx.3_Missense_Mutation_p.N194T|HNRNPH3_uc009xpu.2_Missense_Mutation_p.N78T|HNRNPH3_uc010qiv.1_Missense_Mutation_p.N101T|HNRNPH3_uc001jny.3_Missense_Mutation_p.N160T	NM_012207	NP_036339	P31942	HNRH3_HUMAN	heterogeneous nuclear ribonucleoprotein H3	209	Gly-rich.|RRM 2.				nuclear mRNA splicing, via spliceosome	heterogeneous nuclear ribonucleoprotein complex	nucleotide binding|protein binding|RNA binding			ovary(2)	2						GCAACTGAAAATGACATTGCT	0.368													15	34					0	0	1	0	0	
DNA2	1763	broad.mit.edu	37	10	70182635	70182635	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70182635T>G	uc001jof.2	-	15	2479	c.2479A>C	c.(2479-2481)ACA>CCA	p.T827P	DNA2_uc001jog.1_Intron|DNA2_uc001joh.1_RNA	NM_001080449	NP_001073918	P51530	DNA2L_HUMAN	DNA replication helicase 2 homolog	741					base-excision repair|DNA replication, removal of RNA primer|mitochondrial DNA repair|mitochondrial DNA replication|positive regulation of DNA replication|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	mitochondrial nucleoid|nucleoplasm	5'-flap endonuclease activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|site-specific endodeoxyribonuclease activity, specific for altered base				0						ATACATGTTGTTGCAACTATA	0.303													13	21					0	0	1	0	0	
TET1	80312	broad.mit.edu	37	10	70446447	70446447	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70446447C>T	uc001jok.3	+	11	5892	c.5387C>T	c.(5386-5388)TCG>TTG	p.S1796L		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1796					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						AGTAAGCCTTCGTCACTGCCA	0.428													27	40					0	0	1	0	0	
TET1	80312	broad.mit.edu	37	10	70451273	70451273	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70451273G>A	uc001jok.3	+	12	6618	c.6113G>A	c.(6112-6114)CGT>CAT	p.R2038H		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	2038					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						CACCCCAACCGTAATCATCCA	0.498													22	52					0	0	1	0	0	
CCAR1	55749	broad.mit.edu	37	10	70525798	70525798	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70525798G>A	uc001joo.2	+	17	2379	c.2260G>A	c.(2260-2262)GAC>AAC	p.D754N	CCAR1_uc001jol.1_RNA|CCAR1_uc001jom.1_Missense_Mutation_p.D559N|CCAR1_uc009xpx.1_Missense_Mutation_p.D728N|CCAR1_uc001jon.1_Missense_Mutation_p.D700N|CCAR1_uc010qiz.1_Missense_Mutation_p.D739N|CCAR1_uc010qja.1_Missense_Mutation_p.D739N|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	754	Glu-rich.				apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						TGTCCTATTGGACTACAGATT	0.274													27	53					0	0	1	0	0	
CCAR1	55749	broad.mit.edu	37	10	70550991	70550991	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70550991C>A	uc001joo.2	+	25	3540	c.3421C>A	c.(3421-3423)CAA>AAA	p.Q1141K	CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	1141					apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						AGACAAAGATCAAAAATCCAA	0.264													37	51					5.20837e-25	6.26994e-25	1	1	0	
STOX1	219736	broad.mit.edu	37	10	70644481	70644481	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70644481A>C	uc001jos.2	+	3	1016	c.929A>C	c.(928-930)AAG>ACG	p.K310T	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Missense_Mutation_p.K200T	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	310						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						AAAGGCAAGAAGTTTGGTTTT	0.458													47	86					0	0	1	0	0	
STOX1	219736	broad.mit.edu	37	10	70645601	70645601	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70645601A>C	uc001jos.2	+	3	2136	c.2049A>C	c.(2047-2049)CAA>CAC	p.Q683H	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Missense_Mutation_p.Q573H	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	683						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						CTTTAAGACAAGCTGCAAGAC	0.413													55	121					0	0	1	0	0	
KIAA1279	26128	broad.mit.edu	37	10	70776080	70776080	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70776080G>A	uc001joy.2	+	7	1870	c.1774G>A	c.(1774-1776)GAA>AAA	p.E592K		NM_015634	NP_056449	Q96EK5	KBP_HUMAN	KIF1 binding protein	592					cell differentiation|mitochondrial transport|nervous system development	mitochondrion	kinesin binding			ovary(1)	1						GGCCGCCCAGGAAATAGAAGT	0.398													23	47					0	0	1	0	0	
VPS26A	9559	broad.mit.edu	37	10	70922222	70922222	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:70922222A>G	uc001jpb.2	+	6	738	c.612A>G	c.(610-612)ATA>ATG	p.I204M	VPS26A_uc001jpc.2_Missense_Mutation_p.I204M|VPS26A_uc009xqa.2_Missense_Mutation_p.I197M|VPS26A_uc001jpd.2_Missense_Mutation_p.I93M	NM_004896	NP_004887	O75436	VP26A_HUMAN	vacuolar protein sorting 26 A isoform 1	204					retrograde transport, endosome to Golgi|vacuolar transport	cytosol|endosome membrane|retromer complex|vesicle	protein binding|protein transporter activity				0						GAATAAAAATACAACATATGG	0.264													17	23					0	0	1	0	0	
HK1	3098	broad.mit.edu	37	10	71144127	71144127	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:71144127A>C	uc001jpl.3	+	11	1710	c.1609A>C	c.(1609-1611)AAT>CAT	p.N537H	HK1_uc001jpg.3_Missense_Mutation_p.N525H|HK1_uc001jph.3_Missense_Mutation_p.N541H|HK1_uc001jpi.3_Missense_Mutation_p.N541H|HK1_uc001jpj.3_Missense_Mutation_p.N572H|HK1_uc001jpk.3_Missense_Mutation_p.N536H|HK1_uc009xqd.2_Missense_Mutation_p.N415H	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	537	Catalytic.|ATP 2.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						TGGAGGAACCAATTTCCGTGT	0.463													66	102					0	0	1	0	0	
HK1	3098	broad.mit.edu	37	10	71152041	71152041	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:71152041T>C	uc001jpl.3	+	15	2297	c.2196T>C	c.(2194-2196)TAT>TAC	p.Y732Y	HK1_uc001jpg.3_Silent_p.Y720Y|HK1_uc001jph.3_Silent_p.Y736Y|HK1_uc001jpi.3_Silent_p.Y736Y|HK1_uc001jpj.3_Silent_p.Y767Y|HK1_uc001jpk.3_Silent_p.Y731Y	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	732	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						TGGACGAATATTCCCTAAATG	0.562											OREG0020217	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	52					0	0	1	0	0	
COL13A1	1305	broad.mit.edu	37	10	71657243	71657243	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:71657243A>C	uc001jpr.1	+	12	1206	c.670A>C	c.(670-672)AGC>CGC	p.S224R	COL13A1_uc001jqj.1_Missense_Mutation_p.S224R|COL13A1_uc001jps.1_Missense_Mutation_p.S195R|COL13A1_uc001jpt.1_Intron|COL13A1_uc001jpu.1_Intron|COL13A1_uc001jpv.1_Missense_Mutation_p.S224R|COL13A1_uc001jpx.1_Missense_Mutation_p.S224R|COL13A1_uc001jpw.1_Intron|COL13A1_uc001jpy.1_Intron|COL13A1_uc001jpz.1_Intron|COL13A1_uc001jqa.1_Missense_Mutation_p.S186R|COL13A1_uc001jqc.1_Missense_Mutation_p.S224R|COL13A1_uc001jqb.1_Missense_Mutation_p.S195R|COL13A1_uc001jql.2_Missense_Mutation_p.S224R|COL13A1_uc001jqd.1_Missense_Mutation_p.S212R|COL13A1_uc001jqe.1_Missense_Mutation_p.S207R|COL13A1_uc001jqf.1_Intron|COL13A1_uc001jqg.1_Missense_Mutation_p.S224R|COL13A1_uc001jqh.1_Missense_Mutation_p.S224R|COL13A1_uc001jqi.1_Missense_Mutation_p.S224R|COL13A1_uc010qjf.1_Intron|COL13A1_uc001jqk.1_Missense_Mutation_p.S84R	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	224	Extracellular (Potential).|Nonhelical region 2 (NC2).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	GTGCCTAAGCAGCATGCCAGC	0.607													11	24					0	0	1	0	0	
ADAMTS14	140766	broad.mit.edu	37	10	72517751	72517751	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:72517751C>T	uc001jrh.2	+	20	2971	c.2971C>T	c.(2971-2973)CGG>TGG	p.R991W	ADAMTS14_uc001jrg.2_Missense_Mutation_p.R994W	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	991	TSP type-1 4.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CATCCAGCAGCGGCAGGTGGT	0.652													46	60					0	0	1	0	0	
ADAMTS14	140766	broad.mit.edu	37	10	72520350	72520350	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:72520350C>T	uc001jrh.2	+	22	3413	c.3413C>T	c.(3412-3414)ACG>ATG	p.T1138M	ADAMTS14_uc001jrg.2_Missense_Mutation_p.T1141M	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1138	Pro-rich.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						GGAAAGCCAACGGGATCAGAG	0.577													21	67					0	0	1	0	0	
SLC29A3	55315	broad.mit.edu	37	10	73122094	73122094	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:73122094G>A	uc001jrr.3	+	6	1214	c.1157G>A	c.(1156-1158)CGG>CAG	p.R386Q	SLC29A3_uc001jrs.3_3'UTR|SLC29A3_uc010qjq.1_Missense_Mutation_p.R240Q|SLC29A3_uc001jrt.3_Missense_Mutation_p.R180Q|SLC29A3_uc001jru.3_Missense_Mutation_p.R198Q	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	386	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						GTGCTCCTCCGGACCTGCCTC	0.622													54	132					0	0	1	0	0	
CDH23	64072	broad.mit.edu	37	10	73466770	73466770	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:73466770G>A	uc001jrx.3	+	25	3447	c.3070G>A	c.(3070-3072)GTG>ATG	p.V1024M	CDH23_uc001jry.2_Missense_Mutation_p.V640M|CDH23_uc001jrz.2_Missense_Mutation_p.V640M	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1024	Cadherin 10.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GGACAACGACGTGGGCCTCAA	0.657													5	9					0	0	1	0	0	
CHST3	9469	broad.mit.edu	37	10	73767275	73767275	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:73767275C>T	uc001jsn.2	+	3	926	c.486C>T	c.(484-486)TTC>TTT	p.F162F		NM_004273	NP_004264	Q7LGC8	CHST3_HUMAN	chondroitin 6-sulfotransferase 3	162	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 6-sulfotransferase activity				0						TCTACCTCTTCGAGCCGCTGT	0.687													10	15					0	0	1	0	0	
SPOCK2	9806	broad.mit.edu	37	10	73830147	73830147	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:73830147C>A	uc001jso.1	-	5	842	c.397G>T	c.(397-399)GAC>TAC	p.D133Y	SPOCK2_uc001jsp.2_Missense_Mutation_p.D133Y	NM_014767	NP_055582	Q92563	TICN2_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	133	Kazal-like.				extracellular matrix organization|regulation of cell differentiation|signal transduction|synapse assembly	proteinaceous extracellular matrix	calcium ion binding				0						CAGATGGAGTCTTTGTTTCCA	0.597													14	34					4.93089e-13	5.49801e-13	1	1	0	
PLA2G12B	84647	broad.mit.edu	37	10	74714364	74714364	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:74714364G>A	uc001jtf.1	-	1	147	c.80C>T	c.(79-81)ACG>ATG	p.T27M	PLA2G12B_uc009xqt.1_Translation_Start_Site|PLA2G12B_uc010qjz.1_Missense_Mutation_p.T27M	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	27					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					GGACTCCTCCGTGTCAGGGCT	0.582													51	120					0	0	1	0	0	
P4HA1	5033	broad.mit.edu	37	10	74813221	74813221	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:74813221G>A	uc010qka.1	-	7	925	c.591C>T	c.(589-591)GGC>GGT	p.G197G	P4HA1_uc001jtg.2_Silent_p.G197G|P4HA1_uc001jth.2_Silent_p.G197G|P4HA1_uc010qkb.1_Silent_p.G197G|P4HA1_uc001jti.2_RNA	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	197						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TAGAAATCTCGCCTTCATCCA	0.448													62	89					0	0	1	0	0	
TTC18	118491	broad.mit.edu	37	10	75035326	75035326	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:75035326A>C	uc009xrc.2	-	23	2882	c.2761T>G	c.(2761-2763)TTA>GTA	p.L921V	TTC18_uc001jty.2_Missense_Mutation_p.L921V|TTC18_uc001jtv.3_Missense_Mutation_p.L25V|TTC18_uc001jtw.3_Missense_Mutation_p.L25V|TTC18_uc001jtx.2_Missense_Mutation_p.L302V	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	921							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					TGAGGGCATAACAGCTCATGT	0.438													45	122					0	0	1	0	0	
AGAP5	729092	broad.mit.edu	37	10	75435151	75435151	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:75435151A>C	uc009xri.2	-	8	1308	c.1267T>G	c.(1267-1269)TTT>GTT	p.F423V	AGAP5_uc001juu.3_Missense_Mutation_p.F384V	NM_001144000	NP_001137472	A6NIR3	AGAP5_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	423	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GTGGCTTCAAAGTGCCATGTT	0.522													92	175					0	0	1	0	0	
KIAA0913	23053	broad.mit.edu	37	10	75558819	75558819	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:75558819C>T	uc009xrl.2	+	21	4253	c.4221C>T	c.(4219-4221)GGC>GGT	p.G1407G	KIAA0913_uc001jve.2_Silent_p.G1412G|KIAA0913_uc001jvf.2_Intron|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_Silent_p.G842G|KIAA0913_uc010qkr.1_Silent_p.G830G|KIAA0913_uc001jvj.2_Silent_p.G830G|KIAA0913_uc009xrn.1_5'Flank	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	1407							zinc ion binding			breast(1)	1	Prostate(51;0.0112)					AGGGTGGGGGCGTGTACCCTG	0.562													9	19					0	0	1	0	0	
MYST4	23522	broad.mit.edu	37	10	76784845	76784845	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:76784845C>T	uc001jwn.1	+	17	3995	c.3502C>T	c.(3502-3504)CCA>TCA	p.P1168S	MYST4_uc001jwo.1_Missense_Mutation_p.P876S|MYST4_uc001jwp.1_Missense_Mutation_p.P985S	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1168					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					TGAAGAGAGGCCAATGCCACA	0.493			T	CREBBP	AML								25	44					0	0	1	0	0	
MYST4	23522	broad.mit.edu	37	10	76788342	76788342	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:76788342C>T	uc001jwn.1	+	18	4253	c.3760C>T	c.(3760-3762)CGC>TGC	p.R1254C	MYST4_uc001jwo.1_Missense_Mutation_p.R962C|MYST4_uc001jwp.1_Missense_Mutation_p.R1071C	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1254					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					AGGAACAAAGCGCGGTCTATC	0.443			T	CREBBP	AML								36	76					0	0	1	0	0	
KCNMA1	3778	broad.mit.edu	37	10	78651404	78651404	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:78651404G>A	uc001jxn.2	-	26	3398	c.3221C>T	c.(3220-3222)GCT>GTT	p.A1074V	KCNMA1_uc001jxj.2_Missense_Mutation_p.A1020V|KCNMA1_uc001jxk.1_Missense_Mutation_p.A692V|KCNMA1_uc009xrt.1_Missense_Mutation_p.A865V|KCNMA1_uc001jxl.1_Missense_Mutation_p.A699V|KCNMA1_uc001jxo.2_Missense_Mutation_p.A1057V|KCNMA1_uc001jxm.2_Missense_Mutation_p.A1016V|KCNMA1_uc001jxq.2_Missense_Mutation_p.A1046V|uc001jxp.2_Intron	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	1074	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	AGCAATCAGAGCCTCCAGCTC	0.587													29	37					0	0	1	0	0	
KCNMA1	3778	broad.mit.edu	37	10	79397114	79397114	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:79397114A>G	uc001jxn.2	-	1	464	c.287T>C	c.(286-288)GTG>GCG	p.V96A	KCNMA1_uc001jxj.2_Missense_Mutation_p.V96A|KCNMA1_uc001jxo.2_Missense_Mutation_p.V96A|KCNMA1_uc001jxm.2_Missense_Mutation_p.V96A|KCNMA1_uc001jxq.2_Missense_Mutation_p.V96A|KCNMA1_uc001jxs.3_Missense_Mutation_p.V96A|KCNMA1_uc001jxt.3_Missense_Mutation_p.V96A	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	96	Helical; Name=Segment S0; (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	GAAGAAAGTCACCATGGAGGA	0.602													8	28					0	0	1	0	0	
POLR3A	11128	broad.mit.edu	37	10	79779000	79779000	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:79779000G>T	uc001jzn.2	-	9	1303	c.1209C>A	c.(1207-1209)TTC>TTA	p.F403L		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	403					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			GTTTCCTCAAGAAATTGATGT	0.388													21	43					1.10513e-12	1.22773e-12	1	1	0	
SFTPD	6441	broad.mit.edu	37	10	81706344	81706344	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:81706344C>A	uc001kbh.2	-	2	115	c.72G>T	c.(70-72)AAG>AAT	p.K24N	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	24					cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			GGGAGTAGGTCTTCATTTCTG	0.572													22	20					3.5997e-14	4.05566e-14	1	1	0	
NRG3	10718	broad.mit.edu	37	10	84118498	84118498	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:84118498C>T	uc001kco.2	+	2	854	c.827C>T	c.(826-828)ACG>ATG	p.T276M	NRG3_uc010qlz.1_Missense_Mutation_p.T276M|NRG3_uc001kcp.2_Missense_Mutation_p.T55M|NRG3_uc001kcq.2_Translation_Start_Site	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	276	Ser/Thr-rich.|Extracellular (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity	p.T276R(1)		lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		CTGACAGATACGACGACATAT	0.517													28	53					0	0	1	0	0	
NRG3	10718	broad.mit.edu	37	10	84745345	84745345	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:84745345C>A	uc001kco.2	+	9	2102	c.2075C>A	c.(2074-2076)TCT>TAT	p.S692Y	NRG3_uc010qlz.1_Missense_Mutation_p.S691Y|NRG3_uc001kcp.2_Missense_Mutation_p.S495Y|NRG3_uc001kcq.2_Missense_Mutation_p.S342Y|NRG3_uc001kcr.2_Missense_Mutation_p.S366Y	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	716	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		CAAAGAGACTCTGCATTGACC	0.403													30	86					2.68265e-12	2.96656e-12	1	1	0	
GHITM	27069	broad.mit.edu	37	10	85902490	85902490	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:85902490C>T	uc001kcs.1	+	3	413	c.209C>T	c.(208-210)TCG>TTG	p.S70L	GHITM_uc010qma.1_Nonsense_Mutation_p.R26*|GHITM_uc010qmb.1_5'UTR	NM_014394	NP_055209	Q9H3K2	GHITM_HUMAN	growth hormone inducible transmembrane protein	70	Mitochondrial matrix (Potential).				apoptosis	integral to membrane|mitochondrial inner membrane					0						TTGGAACCATCGATGGAAAAA	0.294													17	32					0	0	1	0	0	
RGR	5995	broad.mit.edu	37	10	86012656	86012656	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:86012656C>T	uc001kdc.1	+	4	440	c.402C>T	c.(400-402)TTC>TTT	p.F134F	RGR_uc001kdd.1_Silent_p.F138F|RGR_uc001kde.1_Silent_p.F134F	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	134	Helical; Name=4; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						TGGTGCTCTTCGTGTGGCTGT	0.587													24	85					0	0	1	0	0	
LIPJ	142910	broad.mit.edu	37	10	90356076	90356076	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:90356076G>T	uc001kff.2	+	7	793	c.479G>T	c.(478-480)AGA>ATA	p.R160I		NM_001010939	NP_001010939	Q5W064	LIPJ_HUMAN	lipase, family member J	160					lipid catabolic process		hydrolase activity			ovary(1)	1		all_cancers(4;2.79e-10)|Prostate(4;1.68e-15)|all_epithelial(4;1.43e-09)|Colorectal(252;0.0381)|Breast(4;0.141)|Melanoma(5;0.2)|all_hematologic(4;0.222)		Colorectal(12;1.02e-05)|COAD - Colon adenocarcinoma(12;1.54e-05)		ATAGCTGAAAGAATCAAAATA	0.264													13	23					2.27111e-07	2.38128e-07	1	1	0	
LIPF	8513	broad.mit.edu	37	10	90427119	90427119	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:90427119G>A	uc001kfg.1	+	2	231	c.65G>A	c.(64-66)GGA>GAA	p.G22E	LIPF_uc009xtk.2_Missense_Mutation_p.G22E|LIPF_uc001kfh.1_Missense_Mutation_p.G32E|LIPF_uc010qmt.1_Missense_Mutation_p.G32E|LIPF_uc010qmu.1_Missense_Mutation_p.G22E	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	22					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		GGTTTGTTTGGAAAATTACAT	0.368													24	47					0	0	1	0	0	
ANKRD22	118932	broad.mit.edu	37	10	90582738	90582738	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:90582738T>G	uc001kfj.3	-	6	904	c.536A>C	c.(535-537)AAA>ACA	p.K179T		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	179											0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		CTGGGAAAATTTTAATCTCCG	0.398													58	119					0	0	1	0	0	
IFIT2	3433	broad.mit.edu	37	10	91066464	91066464	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:91066464C>T	uc009xts.2	+	2	926	c.751C>T	c.(751-753)CGC>TGC	p.R251C	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron	NM_001547	NP_001538	P09913	IFIT2_HUMAN	interferon-induced protein with	251	TPR 4.				negative regulation of protein binding|response to virus|type I interferon-mediated signaling pathway		protein binding			ovary(1)|skin(1)	2		Colorectal(252;0.0161)				AGATGTTCTTCGCAGTGCAGC	0.433													34	71					0	0	1	0	0	
IFIT3	3437	broad.mit.edu	37	10	91099660	91099660	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:91099660T>G	uc001kgf.2	+	2	1477	c.1248T>G	c.(1246-1248)AAT>AAG	p.N416K	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron|IFIT3_uc001kgg.2_Missense_Mutation_p.N416K	NM_001549	NP_001540	O14879	IFIT3_HUMAN	interferon-induced protein with	416	TPR 7.				type I interferon-mediated signaling pathway		protein binding			central_nervous_system(1)	1						ATGCACCAAATTATTGGTATC	0.418													21	59					0	0	1	0	0	
KIF20B	9585	broad.mit.edu	37	10	91484801	91484801	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:91484801G>A	uc001kgs.1	+	15	1959	c.1887G>A	c.(1885-1887)GAG>GAA	p.E629E	KIF20B_uc001kgr.1_Silent_p.E629E|KIF20B_uc001kgt.1_5'UTR	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	629					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						AAGAACGAGAGATATTAGAAG	0.358													31	57					0	0	1	0	0	
KIF20B	9585	broad.mit.edu	37	10	91498280	91498280	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:91498280G>T	uc001kgs.1	+	20	3754	c.3682G>T	c.(3682-3684)GAA>TAA	p.E1228*	KIF20B_uc001kgr.1_Nonsense_Mutation_p.E1188*|KIF20B_uc001kgt.1_Nonsense_Mutation_p.E439*|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1228					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						GCTGAAAGAAGAAATCACACA	0.303													24	59					1.96895e-08	2.09068e-08	1	1	0	
KIF20B	9585	broad.mit.edu	37	10	91528597	91528597	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:91528597A>C	uc001kgs.1	+	31	5266	c.5194A>C	c.(5194-5196)AAA>CAA	p.K1732Q	KIF20B_uc001kgr.1_Missense_Mutation_p.K1692Q|KIF20B_uc001kgt.1_Missense_Mutation_p.K943Q|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1732	Interaction with PIN1.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						AACACTACAGAAATTTGGAGA	0.343													30	57					0	0	1	0	0	
ANKRD1	27063	broad.mit.edu	37	10	92675935	92675935	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:92675935C>T	uc001khe.1	-	6	892	c.644G>A	c.(643-645)CGA>CAA	p.R215Q		NM_014391	NP_055206	Q15327	ANKR1_HUMAN	cardiac ankyrin repeat protein	215					cellular lipid metabolic process|defense response|signal transduction		DNA binding				0		Colorectal(252;0.0475)				TACCTTATCTCGGGCGCTAAT	0.313													16	39					0	0	1	0	0	
BTAF1	9044	broad.mit.edu	37	10	93786976	93786976	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:93786976G>A	uc001khr.2	+	37	5423	c.5325G>A	c.(5323-5325)GCG>GCA	p.A1775A		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1775	Helicase C-terminal.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				TGAACATAGCGAATACTGTTA	0.368													58	103					0	0	1	0	0	
IDE	3416	broad.mit.edu	37	10	94215362	94215362	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:94215362T>G	uc001kia.2	-	24	3011	c.2935A>C	c.(2935-2937)AAT>CAT	p.N979H	IDE_uc010qnp.1_Missense_Mutation_p.N424H|IDE_uc001khz.2_Missense_Mutation_p.N424H	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	979					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGTGACAAATTTATGTCATTT	0.328													24	59					0	0	1	0	0	
HHEX	3087	broad.mit.edu	37	10	94452231	94452231	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:94452231C>T	uc001kid.2	+	2	531	c.468C>T	c.(466-468)TTC>TTT	p.F156F		NM_002729	NP_002720	Q03014	HHEX_HUMAN	hematopoietically expressed homeobox	156	Homeobox.				anterior/posterior pattern formation|B cell differentiation|cell cycle|DNA conformation change|negative regulation of angiogenesis|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of vascular endothelial growth factor receptor signaling pathway|poly(A)+ mRNA export from nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|Wnt receptor signaling pathway	cytoplasm|nucleus|protein-DNA complex	DNA bending activity|eukaryotic initiation factor 4E binding|protein homodimerization activity|repressing transcription factor binding|sequence-specific DNA binding|TBP-class protein binding|transcription regulatory region DNA binding			ovary(1)	1						AGAAGAAATTCGAGACGCAGA	0.597													26	42					0	0	1	0	0	
CYP26C1	340665	broad.mit.edu	37	10	94824234	94824234	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:94824234G>A	uc010qns.1	+	4	802	c.802G>A	c.(802-804)GAC>AAC	p.D268N	CYP26C1_uc009xud.2_Intron	NM_183374	NP_899230	Q6V0L0	CP26C_HUMAN	cytochrome P450, family 26, subfamily C,	268					anterior/posterior pattern formation|central nervous system development|negative regulation of retinoic acid receptor signaling pathway|neural crest cell development|organelle fusion|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			central_nervous_system(1)	1		Colorectal(252;0.122)				TGATGCCCTCGACCTAATCAT	0.602													17	57					0	0	1	0	0	
CYP26A1	1592	broad.mit.edu	37	10	94836943	94836943	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:94836943T>C	uc001kil.2	+	7	1421	c.1376T>C	c.(1375-1377)CTG>CCG	p.L459P	CYP26A1_uc001kik.1_Missense_Mutation_p.L390P|CYP26A1_uc001kim.1_Missense_Mutation_p.L357P	NM_000783	NP_000774	O43174	CP26A_HUMAN	cytochrome P450, family 26, subfamily A,	459					negative regulation of retinoic acid receptor signaling pathway|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|oxygen binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		Colorectal(252;0.122)				ACAGTGGAGCTGGCCAGGCAT	0.463													24	49					0	0	1	0	0	
MYOF	26509	broad.mit.edu	37	10	95161176	95161176	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:95161176C>A	uc001kin.2	-	12	1239	c.1116G>T	c.(1114-1116)CAG>CAT	p.Q372H	MYOF_uc001kio.2_Missense_Mutation_p.Q372H|MYOF_uc001kip.3_Missense_Mutation_p.Q372H|MYOF_uc009xuf.2_Missense_Mutation_p.Q354H	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	372	Cytoplasmic (Potential).|C2 3.				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						AGTACATACTCTGGGGGATGT	0.423													33	82					9.85521e-28	1.19659e-27	1	1	0	
GPR120	338557	broad.mit.edu	37	10	95335855	95335855	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:95335855C>T	uc010qnt.1	+	2	631	c.575C>T	c.(574-576)TCG>TTG	p.S192L	GPR120_uc010qnu.1_Missense_Mutation_p.S192L	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	192	Extracellular (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				TAGGAAATTTCGATTTGCACA	0.438													44	105					0	0	1	0	0	
C10orf4	118924	broad.mit.edu	37	10	95445100	95445100	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:95445100T>C	uc001kiz.1	-	9	726	c.528A>G	c.(526-528)GGA>GGG	p.G176G	C10orf4_uc001kiv.1_RNA|C10orf4_uc001kja.1_Silent_p.G176G	NM_145246	NP_660289	Q70Z53	F10C1_HUMAN	FRA10AC1 protein	176	Lys-rich.					nucleus	protein binding				0		Colorectal(252;0.122)				AATATTTATTTCCACAGAAAA	0.299													47	89					0	0	1	0	0	
C10orf4	118924	broad.mit.edu	37	10	95447191	95447191	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:95447191G>A	uc001kiz.1	-	8	679	c.481C>T	c.(481-483)CGA>TGA	p.R161*	C10orf4_uc001kiv.1_RNA|C10orf4_uc001kja.1_Nonsense_Mutation_p.R161*	NM_145246	NP_660289	Q70Z53	F10C1_HUMAN	FRA10AC1 protein	161	Lys-rich.					nucleus	protein binding				0		Colorectal(252;0.122)				TTTTCTACTCGCCACCTAAAT	0.259													8	11					0	0	1	0	0	
LGI1	9211	broad.mit.edu	37	10	95556817	95556817	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:95556817C>T	uc001kjc.3	+	8	1267	c.931C>T	c.(931-933)CGA>TGA	p.R311*	LGI1_uc010qnv.1_Nonsense_Mutation_p.R263*|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	311	EAR 2.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				CATCTATAAGCGAGACAGTTT	0.378													31	68					0	0	1	0	0	
PIPSL	266971	broad.mit.edu	37	10	95720561	95720561	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:95720561G>A	uc009xuj.2	-	1	1112	c.593C>T	c.(592-594)TCG>TTG	p.S198L		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						CATTTTTACCGATCTTGGTAA	0.458													30	57					0	0	1	0	0	
PLCE1	51196	broad.mit.edu	37	10	95791016	95791016	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:95791016G>A	uc001kjk.2	+	2	847	c.213G>A	c.(211-213)AAG>AAA	p.K71K	PLCE1_uc010qnx.1_Silent_p.K71K	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	71					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ACTTGCCAAAGATTCTCTCAA	0.388													6	98					0	0	1	0	0	
NOC3L	64318	broad.mit.edu	37	10	96097537	96097537	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:96097537C>T	uc001kjq.1	-	19	2274	c.2186G>A	c.(2185-2187)CGA>CAA	p.R729Q		NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	729						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				ATATTACCTTCGACTCAACTC	0.418													31	64					0	0	1	0	0	
NOC3L	64318	broad.mit.edu	37	10	96099593	96099593	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:96099593C>T	uc001kjq.1	-	17	1953	c.1865G>A	c.(1864-1866)CGA>CAA	p.R622Q		NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	622						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				GGCAAGAGCTCGCTGCTGAGA	0.418													15	59					0	0	1	0	0	
CYP2C8	1558	broad.mit.edu	37	10	96796963	96796963	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:96796963C>A	uc001kkb.2	-	9	1490	c.1395G>T	c.(1393-1395)AAG>AAT	p.K465N	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.K395N|CYP2C8_uc010qob.1_Missense_Mutation_p.K379N|CYP2C8_uc010qoc.1_Missense_Mutation_p.K363N	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	465					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	TATTGAGGTTCTTTAAATCAT	0.418													14	26					1.5842e-08	1.6863e-08	1	1	0	
CYP2C8	1558	broad.mit.edu	37	10	96829106	96829106	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:96829106T>G	uc001kkb.2	-	1	149	c.54A>C	c.(52-54)TCA>TCC	p.S18S	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_5'UTR|CYP2C8_uc010qob.1_5'UTR|CYP2C8_uc010qoc.1_5'UTR|CYP2C8_uc010qod.1_5'UTR	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	18					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	GTCTCCAGAGTGAAAAGAGAA	0.453													33	53					0	0	1	0	0	
ZNF518A	9849	broad.mit.edu	37	10	97916956	97916956	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:97916956G>T	uc001klp.2	+	6	1734	c.877G>T	c.(877-879)GAA>TAA	p.E293*	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Nonsense_Mutation_p.E293*|ZNF518A_uc001klr.2_Nonsense_Mutation_p.E293*	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	293					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		ATATGCAAAAGAAAAACTGGA	0.343													9	17					1.12685e-05	1.16379e-05	1	1	0	
ZNF518A	9849	broad.mit.edu	37	10	97918860	97918860	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:97918860A>C	uc001klp.2	+	6	3638	c.2781A>C	c.(2779-2781)AAA>AAC	p.K927N	ZNF518A_uc001klo.1_Missense_Mutation_p.K397N|ZNF518A_uc001klq.2_Missense_Mutation_p.K927N|ZNF518A_uc001klr.2_Missense_Mutation_p.K927N	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	927					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		CAGAACAAAAAAAAACTATAA	0.348													21	56					0	0	1	0	0	
TM9SF3	56889	broad.mit.edu	37	10	98321841	98321841	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:98321841T>G	uc001kmm.3	-	4	693	c.476A>C	c.(475-477)AAA>ACA	p.K159T	TM9SF3_uc010qot.1_Missense_Mutation_p.K159T	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	159						integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		TTCAAGTTTTTTATAGGTCCA	0.308													15	24					0	0	1	0	0	
PIK3AP1	118788	broad.mit.edu	37	10	98376434	98376434	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:98376434C>T	uc001kmq.2	-	13	2104	c.1976G>A	c.(1975-1977)CGA>CAA	p.R659Q	PIK3AP1_uc001kmo.2_Missense_Mutation_p.R258Q|PIK3AP1_uc001kmp.2_Missense_Mutation_p.R481Q	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	659	Potential.					cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		TCTCTGTCTTCGGGTGATGCT	0.423													35	83					0	0	1	0	0	
PIK3AP1	118788	broad.mit.edu	37	10	98408569	98408569	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:98408569C>T	uc001kmq.2	-	7	1160	c.1032G>A	c.(1030-1032)GCG>GCA	p.A344A	PIK3AP1_uc001kmp.2_Silent_p.A166A	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	344						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		GTCCATACTTCGCAGCAAAAT	0.512													8	31					0	0	1	0	0	
LCOR	84458	broad.mit.edu	37	10	98715594	98715594	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:98715594C>T	uc001kms.1	+	8	1738	c.1217C>T	c.(1216-1218)TCG>TTG	p.S406L	LCOR_uc001kmr.2_Intron|C10orf12_uc009xvg.1_Intron|LCOR_uc001kmt.1_Missense_Mutation_p.S406L|LCOR_uc001kmu.1_Missense_Mutation_p.S406L	NM_032440	NP_115816	Q96JN0	LCOR_HUMAN	ligand dependent nuclear receptor corepressor	406						nucleus	DNA binding			ovary(3)	3		Colorectal(252;0.162)		Epithelial(162;4.43e-09)|all cancers(201;2.96e-07)		TTAATGAGGTCGGAGGGGCCA	0.423													19	46					0	0	1	0	0	
C10orf12	26148	broad.mit.edu	37	10	98743206	98743206	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:98743206G>A	uc001kmv.2	+	1	2166	c.2059G>A	c.(2059-2061)GAA>AAA	p.E687K		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	687										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		GGTAGACAACGAAAACACCCA	0.502													31	68					0	0	1	0	0	
C10orf12	26148	broad.mit.edu	37	10	98744567	98744567	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:98744567G>A	uc001kmv.2	+	1	3527	c.3420G>A	c.(3418-3420)ACG>ACA	p.T1140T		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	1140										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		CCAAAAAGACGTCTTTGAAAG	0.498													26	52					0	0	1	0	0	
SLIT1	6585	broad.mit.edu	37	10	98764578	98764578	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:98764578G>T	uc001kmw.2	-	33	3834	c.3582C>A	c.(3580-3582)GTC>GTA	p.V1194V		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1194	Laminin G-like.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CTGCCGTGGAGACCTGATGGG	0.592													16	34					1.5739e-10	1.71181e-10	1	1	0	
MMS19	64210	broad.mit.edu	37	10	99223673	99223673	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:99223673A>C	uc001kns.3	-	19	2079	c.1854T>G	c.(1852-1854)TAT>TAG	p.Y618*	MMS19_uc001knq.2_5'Flank|MMS19_uc009xvs.2_Nonsense_Mutation_p.Y203*|MMS19_uc009xvt.2_Nonsense_Mutation_p.Y362*|MMS19_uc001knr.2_Nonsense_Mutation_p.Y459*|MMS19_uc010qox.1_Nonsense_Mutation_p.Y596*|MMS19_uc001knt.2_Nonsense_Mutation_p.Y618*|MMS19_uc001knu.1_RNA	NM_022362	NP_071757	Q96T76	MMS19_HUMAN	MMS19 nucleotide excision repair homolog	618					chromosome segregation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|response to hormone stimulus|transcription, DNA-dependent|two-component signal transduction system (phosphorelay)	cytoplasm|holo TFIIH complex|MMXD complex	estrogen receptor binding|protein binding, bridging|receptor signaling complex scaffold activity|transcription coactivator activity				0		Colorectal(252;0.0846)		Epithelial(162;3.33e-10)|all cancers(201;2.74e-08)		TCTGGTGGAAATACCAGCAAC	0.517								Direct_reversal_of_damage|NER			OREG0020414	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	10					0	0	1	0	0	
MMS19	64210	broad.mit.edu	37	10	99225597	99225597	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:99225597G>A	uc001kns.3	-	18	1946	c.1721C>T	c.(1720-1722)CCT>CTT	p.P574L	MMS19_uc009xvs.2_Missense_Mutation_p.P159L|MMS19_uc009xvt.2_Missense_Mutation_p.P318L|MMS19_uc001knr.2_Missense_Mutation_p.P415L|MMS19_uc010qox.1_Missense_Mutation_p.P552L|MMS19_uc001knt.2_Missense_Mutation_p.P574L|MMS19_uc001knu.1_RNA	NM_022362	NP_071757	Q96T76	MMS19_HUMAN	MMS19 nucleotide excision repair homolog	574					chromosome segregation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|response to hormone stimulus|transcription, DNA-dependent|two-component signal transduction system (phosphorelay)	cytoplasm|holo TFIIH complex|MMXD complex	estrogen receptor binding|protein binding, bridging|receptor signaling complex scaffold activity|transcription coactivator activity				0		Colorectal(252;0.0846)		Epithelial(162;3.33e-10)|all cancers(201;2.74e-08)		CAGCAGCAGAGGCAGTGTCTC	0.517								Direct_reversal_of_damage|NER					36	97					0	0	1	0	0	
CRTAC1	55118	broad.mit.edu	37	10	99655723	99655723	+	Silent	SNP	G	A	A	rs145632263		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:99655723G>A	uc001kou.1	-	10	1592	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F	CRTAC1_uc001kov.2_Silent_p.F401F|CRTAC1_uc001kot.1_Silent_p.F202F	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	412	FG-GAP 4; atypical.					proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		CGTCTCCGTCGAAGTCGGTCA	0.572													17	46					0	0	1	0	0	
C10orf28	27291	broad.mit.edu	37	10	99991421	99991421	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:99991421T>C	uc001kow.3	+	5	2233	c.1938T>C	c.(1936-1938)CTT>CTC	p.L646L	C10orf28_uc001kox.3_Silent_p.L660L|C10orf28_uc001koy.3_Silent_p.L646L|C10orf28_uc009xvx.2_Silent_p.L646L|C10orf28_uc009xvy.2_Silent_p.L52L|C10orf28_uc001koz.3_RNA	NM_014472	NP_055287	Q4KMY3	Q4KMY3_HUMAN	growth inhibition and differentiation related	646							nucleotide binding			large_intestine(1)|skin(1)	2		Colorectal(252;0.234)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)		CTGAAGACCTTCTACGGGTTT	0.368													42	68					0	0	1	0	0	
HPS1	3257	broad.mit.edu	37	10	100190928	100190928	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:100190928A>C	uc010qpf.1	-	7	874	c.628T>G	c.(628-630)TTC>GTC	p.F210V	HPS1_uc001kpi.1_Missense_Mutation_p.F210V|HPS1_uc001kpj.1_Missense_Mutation_p.F150V|HPS1_uc001kpk.1_Intron|HPS1_uc009xwb.2_RNA|HPS1_uc010qph.1_Missense_Mutation_p.F210V|HPS1_uc001kpl.2_Missense_Mutation_p.F210V	NM_000195	NP_000186	Q92902	HPS1_HUMAN	Hermansky-Pudlak syndrome 1 protein isoform a	210					lysosome organization|response to stimulus|visual perception	cytoplasmic membrane-bounded vesicle|integral to plasma membrane|lysosome|membrane fraction|soluble fraction	protein dimerization activity			skin(1)	1		Colorectal(252;0.234)		Epithelial(162;3.87e-12)|all cancers(201;5.63e-10)		ACGAGCAGGAAGGCATGCAGG	0.627									Hermansky-Pudlak_syndrome				6	24					0	0	1	0	0	
SLC25A28	81894	broad.mit.edu	37	10	101373638	101373638	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:101373638C>T	uc001kpx.2	-	2	464	c.335G>A	c.(334-336)CGC>CAC	p.R112H	SLC25A28_uc001kpy.2_5'UTR|SLC25A28_uc009xwk.1_Missense_Mutation_p.R112H	NM_031212	NP_112489	Q96A46	MFRN2_HUMAN	solute carrier family 25, member 28	112	Solcar 1.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Colorectal(252;0.234)		Epithelial(162;2.57e-10)|all cancers(201;2.01e-08)		CAACACATTGCGATAGCGGGC	0.587													8	24					0	0	1	0	0	
DNMBP	23268	broad.mit.edu	37	10	101716155	101716155	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:101716155G>T	uc001kqj.2	-	4	1168	c.1076C>A	c.(1075-1077)TCT>TAT	p.S359Y	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	359					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		ACCGAGGGGAGAAGTGGGTGC	0.532													35	52					7.11191e-15	8.05931e-15	1	1	0	
FAM178A	55719	broad.mit.edu	37	10	102676415	102676415	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:102676415G>A	uc001krt.3	+	3	815	c.273G>A	c.(271-273)AGG>AGA	p.R91R	FAM178A_uc001krr.1_Silent_p.R91R|FAM178A_uc001krs.2_Silent_p.R91R|FAM178A_uc001kru.1_Silent_p.R27R	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	91											0						AGTTTGAAAGGAAACTATCCT	0.393													14	47					0	0	1	0	0	
FAM178A	55719	broad.mit.edu	37	10	102698458	102698458	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:102698458G>T	uc001krt.3	+	11	3161	c.2619G>T	c.(2617-2619)GAG>GAT	p.E873D	FAM178A_uc001krs.2_Missense_Mutation_p.E873D	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	873											0						TTCCCCTGGAGAATCTTCAGC	0.363													44	119					8.48111e-28	1.03021e-27	1	1	0	
BTRC	8945	broad.mit.edu	37	10	103294454	103294454	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:103294454G>A	uc001kta.2	+	10	1247	c.1134G>A	c.(1132-1134)ACG>ACA	p.T378T	BTRC_uc001ktb.2_Silent_p.T342T|BTRC_uc001ktc.2_Silent_p.T352T	NM_033637	NP_378663	Q9Y297	FBW1A_HUMAN	beta-transducin repeat containing protein	378	WD 2.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|positive regulation of proteolysis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|viral reproduction|Wnt receptor signaling pathway	cytosol|nucleus|SCF ubiquitin ligase complex				ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;1.05e-08)|all cancers(201;6.59e-07)		TGCTAAACACGTTGATTCACC	0.413													14	164					0	0	1	0	0	
POLL	27343	broad.mit.edu	37	10	103340084	103340084	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:103340084G>A	uc001ktg.1	-	7	2050	c.1284C>T	c.(1282-1284)GTC>GTT	p.V428V	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_Silent_p.V101V|POLL_uc001kte.1_Silent_p.V120V|POLL_uc001kth.1_Silent_p.V153V|POLL_uc001kti.1_Silent_p.V428V|POLL_uc001ktj.1_Silent_p.V428V|POLL_uc001ktf.2_Silent_p.V336V|POLL_uc001ktk.1_Silent_p.V167V|POLL_uc010qqa.1_Silent_p.V167V|POLL_uc010qqb.1_RNA|POLL_uc001ktm.2_Silent_p.V428V|POLL_uc001ktl.2_Silent_p.V340V|POLL_uc010qqc.1_Silent_p.V120V	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	428	Involved in primer binding (By similarity).				DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		TGAGCACGTCGACATCACCAC	0.582								DNA_polymerases_(catalytic_subunits)					48	71					0	0	1	0	0	
HPS6	79803	broad.mit.edu	37	10	103826086	103826086	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:103826086C>T	uc001kuj.2	+	1	940	c.855C>T	c.(853-855)TTC>TTT	p.F285F		NM_024747	NP_079023	Q86YV9	HPS6_HUMAN	Hermansky-Pudlak syndrome-6	285						cytosol|early endosome membrane|endoplasmic reticulum|microsome					0		Colorectal(252;0.122)		Epithelial(162;5.93e-08)|all cancers(201;1.03e-06)		TGCTTGACTTCGGGGGCACTG	0.677									Hermansky-Pudlak_syndrome				34	50					0	0	1	0	0	
PSD	5662	broad.mit.edu	37	10	104164427	104164427	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:104164427G>T	uc001kvg.1	-	15	3140	c.2613C>A	c.(2611-2613)TTC>TTA	p.F871L	PSD_uc001kve.1_Missense_Mutation_p.F79L|PSD_uc001kvf.1_Missense_Mutation_p.F240L|PSD_uc001kvh.1_Missense_Mutation_p.F492L|PSD_uc009xxd.1_Missense_Mutation_p.F871L	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	871					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GGGGCGCAGAGAACATAGCGG	0.617													60	129					8.33888e-18	9.69929e-18	1	1	0	
SUFU	51684	broad.mit.edu	37	10	104268934	104268934	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:104268934G>T	uc001kvy.1	+	2	337	c.191G>T	c.(190-192)GGC>GTC	p.G64V	SUFU_uc001kvw.1_Missense_Mutation_p.G64V|SUFU_uc001kvx.2_Missense_Mutation_p.G64V	NM_016169	NP_057253	Q9UMX1	SUFU_HUMAN	suppressor of fused	64					negative regulation of transcription from RNA polymerase II promoter|proteolysis|skeletal system development	cytoplasm|nucleus	identical protein binding|protein binding|signal transducer activity|transcription corepressor activity|transcription factor binding			central_nervous_system(4)|skin(2)|breast(1)	7		Colorectal(252;0.207)		Epithelial(162;1.36e-08)|all cancers(201;3.81e-07)|BRCA - Breast invasive adenocarcinoma(275;0.242)		AGGTTGGGTGGCCCAGACCCC	0.318			D|F|S		medulloblastoma	medulloblastoma			Medulloblastoma_associated_with_Germline_SUFU_Mutation				41	67					6.48837e-15	7.35576e-15	1	1	0	
C10orf26	54838	broad.mit.edu	37	10	104569765	104569765	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:104569765C>T	uc001kwe.3	+	3	506	c.246C>T	c.(244-246)ATC>ATT	p.I82I	C10orf26_uc001kwf.3_Silent_p.I103I|C10orf26_uc009xxg.1_RNA	NM_017787	NP_060257	Q9NX94	OPA1L_HUMAN	hypothetical protein LOC54838 isoform 2	82						integral to membrane				central_nervous_system(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;6.14e-09)|all cancers(201;1.66e-07)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TCAACCTGATCGCTTACCGAG	0.567													40	119					0	0	1	0	0	
NT5C2	22978	broad.mit.edu	37	10	104852955	104852955	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:104852955C>T	uc001kwo.2	-	15	1286	c.1100G>A	c.(1099-1101)CGA>CAA	p.R367Q	NT5C2_uc010qqp.1_Missense_Mutation_p.R338Q|NT5C2_uc001kwq.2_Missense_Mutation_p.R367Q|NT5C2_uc001kwp.2_Missense_Mutation_p.R214Q	NM_012229	NP_036361	P49902	5NTC_HUMAN	5'-nucleotidase, cytosolic II	367					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|metal ion binding|nucleotide binding|protein binding				0		all_hematologic(284;0.176)|Colorectal(252;0.178)		Epithelial(162;1.33e-08)|all cancers(201;1.04e-07)|BRCA - Breast invasive adenocarcinoma(275;0.159)	Adenosine triphosphate(DB00171)|Ribavirin(DB00811)	CAAAAAAGTTCGCCACCCTTG	0.393													32	86					0	0	1	0	0	
NT5C2	22978	broad.mit.edu	37	10	104854130	104854130	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:104854130C>T	uc001kwo.2	-	13	1082	c.896G>A	c.(895-897)GGC>GAC	p.G299D	NT5C2_uc010qqp.1_Missense_Mutation_p.G270D|NT5C2_uc001kwq.2_Missense_Mutation_p.G299D|NT5C2_uc001kwp.2_Missense_Mutation_p.G146D	NM_012229	NP_036361	P49902	5NTC_HUMAN	5'-nucleotidase, cytosolic II	299					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|metal ion binding|nucleotide binding|protein binding				0		all_hematologic(284;0.176)|Colorectal(252;0.178)		Epithelial(162;1.33e-08)|all cancers(201;1.04e-07)|BRCA - Breast invasive adenocarcinoma(275;0.159)	Adenosine triphosphate(DB00171)|Ribavirin(DB00811)	CAGTACTGTGCCTTCTCCAAA	0.478													7	30					0	0	1	0	0	
LOC729020	729020	broad.mit.edu	37	10	105005926	105005926	+	Missense_Mutation	SNP	G	A	A	rs61746133	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:105005926G>A	uc009xxi.2	+	1	283	c.173G>A	c.(172-174)CGA>CAA	p.R58Q	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	58					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						GAAAGCCTTCGAAAGCAGCTA	0.498													75	183					0	0	1	0	0	
PDCD11	22984	broad.mit.edu	37	10	105172967	105172967	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:105172967G>A	uc001kwy.1	+	9	1160	c.1073G>A	c.(1072-1074)CGA>CAA	p.R358Q		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	358					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		CCACTCACCCGACTCTCTTGC	0.572													30	69					0	0	1	0	0	
PDCD11	22984	broad.mit.edu	37	10	105198554	105198554	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:105198554T>C	uc001kwy.1	+	27	4101	c.4014T>C	c.(4012-4014)GGT>GGC	p.G1338G		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	1338	S1 motif 12.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		AGCCACACGGTGTGTTCTTTC	0.547													28	63					0	0	1	0	0	
PDCD11	22984	broad.mit.edu	37	10	105205159	105205159	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:105205159T>C	uc001kwy.1	+	36	5556	c.5469T>C	c.(5467-5469)CAT>CAC	p.H1823H		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	1823	HAT 4.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		GGGTCATTCATCTGAGCTTGG	0.537													10	128					0	0	1	0	0	
C10orf79	80217	broad.mit.edu	37	10	105900722	105900722	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:105900722T>C	uc001kxw.2	-	34	4425	c.4309A>G	c.(4309-4311)ACA>GCA	p.T1437A	C10orf79_uc009xxq.2_Missense_Mutation_p.T716A	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1437											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		ATTTGGATTGTCAAATTCAAC	0.318													10	31					0	0	1	0	0	
C10orf79	80217	broad.mit.edu	37	10	105921768	105921768	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:105921768T>C	uc001kxw.2	-	26	3481	c.3365A>G	c.(3364-3366)GAC>GGC	p.D1122G	C10orf79_uc009xxq.2_Missense_Mutation_p.D430G	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1122											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TCCCATCATGTCCATCAGAGC	0.473													125	248					0	0	1	0	0	
C10orf79	80217	broad.mit.edu	37	10	105944863	105944863	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:105944863A>G	uc001kxw.2	-	16	2168	c.2052T>C	c.(2050-2052)CAT>CAC	p.H684H	C10orf79_uc009xxq.2_5'UTR|C10orf79_uc001kxx.3_Silent_p.H685H	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	684	WD 9.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		ACTGAATCCCATGACCCTGGT	0.403													40	68					0	0	1	0	0	
CCDC147	159686	broad.mit.edu	37	10	106128305	106128305	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:106128305C>T	uc001kyh.2	+	6	1051	c.917C>T	c.(916-918)GCG>GTG	p.A306V		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	306	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		CAACAGAAGGCGTTGGAGCTC	0.463													17	54					0	0	1	0	0	
CCDC147	159686	broad.mit.edu	37	10	106160654	106160654	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:106160654G>T	uc001kyh.2	+	13	2166	c.2032G>T	c.(2032-2034)GAA>TAA	p.E678*		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	678	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		TAATGTTGAAGAACTCAGGTA	0.468													27	35					4.87955e-14	5.4818e-14	1	1	0	
CCDC147	159686	broad.mit.edu	37	10	106209871	106209871	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:106209871G>T	uc001kyh.2	+	17	2553	c.2419G>T	c.(2419-2421)GAA>TAA	p.E807*		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	807	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		ACAGAGCAAAGAATATAAATA	0.313													44	92					2.35958e-20	2.78446e-20	1	1	0	
SORCS3	22986	broad.mit.edu	37	10	106737154	106737155	+	Missense_Mutation	DNP	CG	TA	TA	rs139171852		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:106737154_106737155CG>TA	uc001kyi.1	+	4	1084_1085	c.857_858CG>TA	c.(856-858)GCG>GTA	p.A286V		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	286	BNR 2.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GACGAAGGGGCGACCTATCAGA	0.47													15	43					0	0	1	0	0	
SORCS3	22986	broad.mit.edu	37	10	106899200	106899200	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:106899200G>T	uc001kyi.1	+	8	1485	c.1258G>T	c.(1258-1260)GAG>TAG	p.E420*		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	420	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TTATCGAAGAGAGGCCTTTGC	0.507													34	87					3.11337e-16	3.5706e-16	1	1	0	
SMNDC1	10285	broad.mit.edu	37	10	112058499	112058499	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:112058499G>A	uc001kzc.3	-	3	372	c.170C>T	c.(169-171)ACG>ATG	p.T57M	SMNDC1_uc001kzb.2_Translation_Start_Site	NM_005871	NP_005862	O75940	SPF30_HUMAN	survival motor neuron domain containing 1	57					apoptosis|induction of apoptosis|mRNA processing|RNA splicing, via transesterification reactions	Cajal body|cytoplasm|nuclear speck|spliceosomal complex	protein binding|RNA binding			skin(1)	1		Breast(234;0.174)		Epithelial(162;6.86e-05)|all cancers(201;0.00149)|BRCA - Breast invasive adenocarcinoma(275;0.119)		ACTTGCAAGCGTCTCAGAAGG	0.368													26	36					0	0	1	0	0	
RPL13AP6	644511	broad.mit.edu	37	10	112696774	112696774	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:112696774A>G	uc010qrh.1	-	1	240	c.218T>C	c.(217-219)TTC>TCC	p.F73S	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						GGGGGCCCGGAAGTGGTAGGG	0.567													12	26					0	0	1	0	0	
TECTB	6975	broad.mit.edu	37	10	114053507	114053507	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:114053507C>A	uc001kzr.1	+	5	495	c.495C>A	c.(493-495)TTC>TTA	p.F165L		NM_058222	NP_478129	Q96PL2	TECTB_HUMAN	tectorin beta precursor	165	ZP.					anchored to membrane|plasma membrane|proteinaceous extracellular matrix					0		Colorectal(252;0.198)		Epithelial(162;0.0143)|all cancers(201;0.0242)		ATGCCAAGTTCTCCATCAAGA	0.478													21	63					2.89027e-11	3.162e-11	1	1	0	
ACSL5	51703	broad.mit.edu	37	10	114186031	114186031	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:114186031G>A	uc001kzs.2	+	19	1894	c.1753G>A	c.(1753-1755)GTG>ATG	p.V585M	ACSL5_uc001kzt.2_Missense_Mutation_p.V585M|ACSL5_uc001kzu.2_Missense_Mutation_p.V641M|ACSL5_uc009xxz.2_Missense_Mutation_p.V585M|ACSL5_uc010qrj.1_Missense_Mutation_p.V367M	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	585	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		CTTAGTAGGAGTGGTGGTTCC	0.448													27	61					0	0	1	0	0	
ACSL5	51703	broad.mit.edu	37	10	114186112	114186112	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:114186112A>C	uc001kzs.2	+	19	1975	c.1834A>C	c.(1834-1836)AAC>CAC	p.N612H	ACSL5_uc001kzt.2_Missense_Mutation_p.N612H|ACSL5_uc001kzu.2_Missense_Mutation_p.N668H|ACSL5_uc009xxz.2_Missense_Mutation_p.N612H|ACSL5_uc010qrj.1_Missense_Mutation_p.N394H	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	612	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		ACTGTGCCAAAACCAAGTAAG	0.517													26	44					0	0	1	0	0	
VTI1A	143187	broad.mit.edu	37	10	114224397	114224397	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:114224397G>A	uc001kzy.2	+	3	621	c.245G>A	c.(244-246)GGA>GAA	p.G82E	VTI1A_uc001kzz.2_Missense_Mutation_p.G82E	NM_145206	NP_660207	Q96AJ9	VTI1A_HUMAN	SNARE Vti1a-beta protein	82	Potential.				intracellular protein transport|retrograde transport, endosome to Golgi	SNARE complex	protein transporter activity|SNAP receptor activity			ovary(1)	1		Colorectal(252;0.0314)|Breast(234;0.183)		Epithelial(162;0.0126)|all cancers(201;0.0487)		CAAGAAATGGGAAAACTCGAA	0.393													18	28					0	0	1	0	0	
TCF7L2	6934	broad.mit.edu	37	10	114920412	114920412	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:114920412C>T	uc001lae.3	+	13	1860	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F	TCF7L2_uc001lac.3_Intron|TCF7L2_uc010qrk.1_Intron|TCF7L2_uc010qrl.1_Silent_p.F428F|TCF7L2_uc010qrm.1_Intron|TCF7L2_uc010qrn.1_Intron|TCF7L2_uc001lad.3_Intron|TCF7L2_uc001lag.3_Intron|TCF7L2_uc001laf.3_Intron|TCF7L2_uc010qro.1_Intron|TCF7L2_uc001lah.2_Missense_Mutation_p.R475W|TCF7L2_uc010qrp.1_Intron|TCF7L2_uc010qrq.1_Intron|TCF7L2_uc010qrr.1_Silent_p.F383F|TCF7L2_uc010qrs.1_Intron|TCF7L2_uc010qrt.1_Silent_p.F339F|TCF7L2_uc010qru.1_Intron|TCF7L2_uc010qrv.1_Intron|TCF7L2_uc010qrw.1_Intron|TCF7L2_uc010qrx.1_Intron	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	468	Promoter-specific activation domain.				anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		GGGCACTGTTCGGGCTTGACC	0.458													5	2					0	0	1	0	0	
TCF7L2	6934	broad.mit.edu	37	10	114925333	114925333	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:114925333C>T	uc001lae.3	+	14	1918	c.1411C>T	c.(1411-1413)CGC>TGC	p.R471C	TCF7L2_uc001lac.3_Missense_Mutation_p.R465C|TCF7L2_uc010qrk.1_Silent_p.F440F|TCF7L2_uc010qrl.1_Missense_Mutation_p.R448C|TCF7L2_uc010qrm.1_Silent_p.F446F|TCF7L2_uc010qrn.1_Silent_p.F389F|TCF7L2_uc001lad.3_Silent_p.F436F|TCF7L2_uc001lag.3_Silent_p.F470F|TCF7L2_uc001laf.3_Missense_Mutation_p.R448C|TCF7L2_uc010qro.1_Silent_p.F423F|TCF7L2_uc001lah.2_3'UTR|TCF7L2_uc010qrp.1_3'UTR|TCF7L2_uc010qrq.1_3'UTR|TCF7L2_uc010qrr.1_Missense_Mutation_p.R403C|TCF7L2_uc010qrs.1_Missense_Mutation_p.R359C|TCF7L2_uc010qrt.1_Missense_Mutation_p.R359C|TCF7L2_uc010qru.1_Silent_p.F362F|TCF7L2_uc010qrv.1_3'UTR|TCF7L2_uc010qrw.1_3'UTR|TCF7L2_uc010qrx.1_3'UTR	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	488	Promoter-specific activation domain.				anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding	p.R465C(1)		large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		AAAGTGCGTTCGCTACATACA	0.532													59	132					0	0	1	0	0	
NRAP	4892	broad.mit.edu	37	10	115380377	115380377	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:115380377C>A	uc001laj.2	-	25	3024	c.2860G>T	c.(2860-2862)GAA>TAA	p.E954*	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Nonsense_Mutation_p.E919*|NRAP_uc001lal.3_Nonsense_Mutation_p.E954*	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	954	Nebulin 24.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CTAATGAGTTCTCCTGCCTTC	0.493													44	99					2.95478e-19	3.46784e-19	1	1	0	
NHLRC2	374354	broad.mit.edu	37	10	115661480	115661480	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:115661480C>T	uc001lax.1	+	7	1407	c.1195C>T	c.(1195-1197)CGA>TGA	p.R399*	NHLRC2_uc001lay.1_RNA	NM_198514	NP_940916	Q8NBF2	NHLC2_HUMAN	NHL repeat containing 2	399					cell redox homeostasis					ovary(1)	1				Epithelial(162;0.017)|all cancers(201;0.0187)		TGAAGAGAATCGAAACAATGC	0.448													58	112					0	0	1	0	0	
NHLRC2	374354	broad.mit.edu	37	10	115662299	115662299	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:115662299A>G	uc001lax.1	+	8	1653	c.1441A>G	c.(1441-1443)ACA>GCA	p.T481A	NHLRC2_uc001lay.1_RNA	NM_198514	NP_940916	Q8NBF2	NHLC2_HUMAN	NHL repeat containing 2	481	NHL 5.				cell redox homeostasis					ovary(1)	1				Epithelial(162;0.017)|all cancers(201;0.0187)		CCTTGGAGTAACATGGGACAA	0.343													44	91					0	0	1	0	0	
C10orf118	55088	broad.mit.edu	37	10	115887281	115887281	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:115887281T>G	uc001lbb.1	-	14	2984	c.2332A>C	c.(2332-2334)AAG>CAG	p.K778Q	C10orf118_uc009xyd.1_Missense_Mutation_p.K376Q|C10orf118_uc001lbc.1_Missense_Mutation_p.K778Q|C10orf118_uc009xye.1_Intron	NM_018017	NP_060487	Q7Z3E2	CJ118_HUMAN	CTCL tumor antigen L14-2	778	Potential.									ovary(2)	2		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0161)|all cancers(201;0.0397)		AATTCTATCTTTTCATTTTTC	0.378													34	61					0	0	1	0	0	
TRUB1	142940	broad.mit.edu	37	10	116734914	116734914	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:116734914A>G	uc001lcd.2	+	8	887	c.826A>G	c.(826-828)ACC>GCC	p.T276A	TRUB1_uc010qsl.1_Missense_Mutation_p.T178A	NM_139169	NP_631908	Q8WWH5	TRUB1_HUMAN	TruB pseudouridine (psi) synthase homolog 1	276					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding				0		Colorectal(252;0.09)|Breast(234;0.174)|Lung NSC(174;0.245)		Epithelial(162;0.00879)|all cancers(201;0.0243)		GCTAGAGCTGACCCGAACCAA	0.408													21	167					0	0	1	0	0	
ATRNL1	26033	broad.mit.edu	37	10	117024726	117024726	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:117024726T>G	uc001lcg.2	+	11	2130	c.1744T>G	c.(1744-1746)TTT>GTT	p.F582V		NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	582	Kelch 5.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TGTCAACAGATTTGGACACTC	0.289													42	104					0	0	1	0	0	
GFRA1	2674	broad.mit.edu	37	10	117849401	117849401	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:117849401C>T	uc001lcj.2	-	9	1746	c.1048G>A	c.(1048-1050)GAT>AAT	p.D350N	GFRA1_uc001lci.2_Missense_Mutation_p.D345N|GFRA1_uc009xyr.2_Missense_Mutation_p.D345N	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	350					axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		ACGGTCACATCGGAGCCATTG	0.522													16	34					0	0	1	0	0	
PNLIPRP3	119548	broad.mit.edu	37	10	118236226	118236226	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:118236226A>G	uc001lcl.3	+	11	1336	c.1235A>G	c.(1234-1236)AAC>AGC	p.N412S		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	412	PLAT.				lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		AACGTTGGAAACATTACAAGT	0.358													35	65					0	0	1	0	0	
PNLIP	5406	broad.mit.edu	37	10	118306875	118306875	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:118306875G>T	uc001lcm.2	+	3	159	c.116G>T	c.(115-117)AGA>ATA	p.R39I		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	39					lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	ATTACGGAAAGACCCCTCCAT	0.433													35	64					2.09667e-21	2.48674e-21	1	1	0	
PNLIPRP1	5407	broad.mit.edu	37	10	118354250	118354250	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:118354250C>T	uc001lco.1	+	5	357	c.339C>T	c.(337-339)TTC>TTT	p.F113F	PNLIPRP1_uc001lcp.2_Silent_p.F113F|PNLIPRP1_uc009xys.1_RNA	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	113					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		AGAAACTGTTCGAGGTGGAGG	0.577													36	66					0	0	1	0	0	
PNLIPRP2	5408	broad.mit.edu	37	10	118383524	118383524	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:118383524C>T	uc001lcq.2	+	5	144	c.121C>T	c.(121-123)CGA>TGA	p.R41*	PNLIPRP2_uc009xyu.1_RNA|PNLIPRP2_uc009xyv.1_RNA	NM_005396	NP_005387	P54317	LIPR2_HUMAN	pancreatic lipase-related protein 2	40					galactolipid catabolic process|lipid digestion|phospholipid catabolic process|triglyceride metabolic process	extracellular space	acylglycerol lipase activity|calcium ion binding|galactolipase activity|phospholipase activity|triglyceride lipase activity			large_intestine(1)	1				all cancers(201;0.015)		AACCCTTCAGCGACCTGTAAA	0.473													26	44					0	0	1	0	0	
HSPA12A	259217	broad.mit.edu	37	10	118460485	118460485	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:118460485T>G	uc001lct.2	-	4	515	c.410A>C	c.(409-411)GAG>GCG	p.E137A	HSPA12A_uc001lcu.2_Missense_Mutation_p.E54A	NM_025015	NP_079291	O43301	HS12A_HUMAN	heat shock 70kDa protein 12A	137							ATP binding			ovary(1)	1				all cancers(201;0.0158)		CTTGAACTTCTCCAGGTACAG	0.592													39	93					0	0	1	0	0	
KIAA1598	57698	broad.mit.edu	37	10	118661437	118661437	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:118661437G>A	uc009xyw.2	-	16	2010	c.1512C>T	c.(1510-1512)TCC>TCT	p.S504S	KIAA1598_uc001lcz.3_Intron|KIAA1598_uc010qso.1_Silent_p.S444S|KIAA1598_uc010qsp.1_Silent_p.S504S|KIAA1598_uc010qsq.1_Silent_p.S444S|KIAA1598_uc001lcy.3_Silent_p.S474S	NM_001127211	NP_001120683	A0MZ66	SHOT1_HUMAN	shootin1 isoform a	504					axon guidance	axon					0				all cancers(201;0.00494)		GCATGGATTTGGACTCTGAGG	0.418													10	18					0	0	1	0	0	
KCNK18	338567	broad.mit.edu	37	10	118960684	118960684	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:118960684A>C	uc010qsr.1	+	2	238	c.238A>C	c.(238-240)AAA>CAA	p.K80Q		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	80						integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		GGAAGACAGAAAACAGGATCT	0.522													71	139					0	0	1	0	0	
SLC18A2	6571	broad.mit.edu	37	10	119014811	119014811	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:119014811C>T	uc001ldd.1	+	7	755	c.724C>T	c.(724-726)CTC>TTC	p.L242F	SLC18A2_uc009xyy.1_Missense_Mutation_p.L39F	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	242	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	CGGGAGTGTGCTCTATGAGTT	0.602													17	50					0	0	1	0	0	
PDZD8	118987	broad.mit.edu	37	10	119043112	119043112	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:119043112C>T	uc001lde.1	-	5	3331	c.3132G>A	c.(3130-3132)CAG>CAA	p.Q1044Q		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	1044	Potential.				intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		CAATTTCATTCTGTAGCTTAT	0.388													50	91					0	0	1	0	0	
PDZD8	118987	broad.mit.edu	37	10	119044160	119044160	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:119044160C>A	uc001lde.1	-	5	2283	c.2084G>T	c.(2083-2085)AGA>ATA	p.R695I		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	695					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		TGCTCTGGTTCTTGTCCATTT	0.433													31	78					2.65835e-16	3.05131e-16	1	1	0	
PDZD8	118987	broad.mit.edu	37	10	119044314	119044314	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:119044314C>T	uc001lde.1	-	5	2129	c.1930G>A	c.(1930-1932)GAT>AAT	p.D644N		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	644					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		GCAGCTGCATCGTCTATGGCA	0.458													35	59					0	0	1	0	0	
C10orf46	143384	broad.mit.edu	37	10	120460905	120460905	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:120460905C>T	uc001lds.1	-	5	1193	c.709G>A	c.(709-711)GAA>AAA	p.E237K	C10orf46_uc010qst.1_RNA	NM_153810	NP_722517	Q86Y37	CJ046_HUMAN	chromosome 10 open reading frame 46	237					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex	ubiquitin protein ligase binding				0		Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0131)		AGCTTGGTTTCGATGTAAAAC	0.299													35	47					0	0	1	0	0	
EIF3A	8661	broad.mit.edu	37	10	120825078	120825078	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:120825078A>G	uc001ldu.2	-	7	1101	c.955T>C	c.(955-957)TCT>CCT	p.S319P	EIF3A_uc010qsu.1_Missense_Mutation_p.S285P	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	319					formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		ACTCTAGTAGACATTCTATGG	0.383													36	72					0	0	1	0	0	
SFXN4	119559	broad.mit.edu	37	10	120923675	120923675	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:120923675A>C	uc001leb.2	-	2	190	c.145T>G	c.(145-147)TTA>GTA	p.L49V	SFXN4_uc001ldz.2_5'UTR|SFXN4_uc001lea.2_RNA	NM_213649	NP_998814	Q6P4A7	SFXN4_HUMAN	sideroflexin 4	49					iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0261)		GGATCTAATAATTCTGTCCAT	0.328													60	63					0	0	1	0	0	
BAG3	9531	broad.mit.edu	37	10	121436099	121436099	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:121436099G>T	uc001lem.2	+	4	1339	c.1033G>T	c.(1033-1035)GAG>TAG	p.E345*	BAG3_uc001lel.2_Nonsense_Mutation_p.E344*	NM_004281	NP_004272	O95817	BAG3_HUMAN	BCL2-associated athanogene 3	345					anti-apoptosis|apoptosis|protein folding	cytosol				ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00187)|BRCA - Breast invasive adenocarcinoma(275;0.148)		GATCCGCAAAGAGGTGGATTC	0.542													81	108					4.00405e-42	4.96687e-42	1	1	0	
INPP5F	22876	broad.mit.edu	37	10	121565919	121565919	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:121565919T>C	uc001leo.2	+	12	1533	c.1367T>C	c.(1366-1368)GTT>GCT	p.V456A		NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	456	SAC.						phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		ATTTTTCGTGTTAATTGTATG	0.378													8	22					0	0	1	0	0	
FGFR2	2263	broad.mit.edu	37	10	123274722	123274722	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:123274722C>T	uc010qtk.1	-	9	1843	c.1196G>A	c.(1195-1197)CGA>CAA	p.R399Q	FGFR2_uc010qtg.1_Missense_Mutation_p.R287Q|FGFR2_uc010qth.1_Missense_Mutation_p.R284Q|FGFR2_uc010qti.1_Missense_Mutation_p.R310Q|FGFR2_uc010qtj.1_Missense_Mutation_p.R400Q|FGFR2_uc010qtl.1_Intron|FGFR2_uc010qtm.1_Missense_Mutation_p.R284Q|FGFR2_uc001lfl.3_Missense_Mutation_p.R400Q|FGFR2_uc001lfm.2_Missense_Mutation_p.R311Q|FGFR2_uc001lfn.3_RNA|FGFR2_uc001lfg.3_Missense_Mutation_p.R9Q	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	399	Cytoplasmic (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GTTCTTCATTCGGCACAGGAT	0.507		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				36	84					0	0	1	0	0	
TACC2	10579	broad.mit.edu	37	10	123845456	123845456	+	Silent	SNP	G	A	A	rs145035433	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:123845456G>A	uc001lfv.2	+	4	3801	c.3441G>A	c.(3439-3441)CCG>CCA	p.P1147P	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.P1147P|TACC2_uc010qtv.1_Silent_p.P1147P	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1147						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGCAGGCTCCGGAGAAACCTG	0.592													20	39					0	0	1	0	0	
TACC2	10579	broad.mit.edu	37	10	123997519	123997519	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:123997519A>G	uc001lfv.2	+	18	8675	c.8315A>G	c.(8314-8316)TAT>TGT	p.Y2772C	TACC2_uc001lfw.2_Missense_Mutation_p.Y918C|TACC2_uc009xzx.2_Missense_Mutation_p.Y2650C|TACC2_uc010qtv.1_Missense_Mutation_p.Y2699C|TACC2_uc001lfx.2_Missense_Mutation_p.Y399C|TACC2_uc001lfy.2_Missense_Mutation_p.Y395C|TACC2_uc001lfz.2_Missense_Mutation_p.Y850C|TACC2_uc001lga.2_Missense_Mutation_p.Y820C|TACC2_uc009xzy.2_Missense_Mutation_p.Y832C|TACC2_uc001lgb.2_Missense_Mutation_p.Y730C	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2772	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AAAGATAAATATGAAGAAAGC	0.458													19	31					0	0	1	0	0	
TACC2	10579	broad.mit.edu	37	10	124009084	124009084	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:124009084C>T	uc001lfv.2	+	22	9046	c.8686C>T	c.(8686-8688)CGA>TGA	p.R2896*	TACC2_uc001lfw.2_Nonsense_Mutation_p.R1042*|TACC2_uc009xzx.2_Nonsense_Mutation_p.R2774*|TACC2_uc010qtv.1_Nonsense_Mutation_p.R2823*|TACC2_uc001lfx.2_Nonsense_Mutation_p.R523*|TACC2_uc001lfy.2_Nonsense_Mutation_p.R519*|TACC2_uc001lfz.2_Nonsense_Mutation_p.R974*|TACC2_uc001lga.2_Nonsense_Mutation_p.R944*|TACC2_uc009xzy.2_Nonsense_Mutation_p.R956*|TACC2_uc001lgb.2_Nonsense_Mutation_p.R854*	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2896	Potential.			R -> Q (in Ref. 3; AAO62629/AAO62630).		microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TGCTCAGGTTCGAGGCAAGGC	0.597													18	30					0	0	1	0	0	
BTBD16	118663	broad.mit.edu	37	10	124043396	124043396	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:124043396C>A	uc001lgc.1	+	4	449	c.198C>A	c.(196-198)TTC>TTA	p.F66L	BTBD16_uc001lgd.1_Missense_Mutation_p.F65L	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	66										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				AGAAGTTTTTCTTTGAGAATT	0.373													25	39					1.77063e-15	2.01907e-15	1	1	0	
HTRA1	5654	broad.mit.edu	37	10	124271569	124271569	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:124271569C>T	uc001lgj.2	+	8	1390	c.1262C>T	c.(1261-1263)ACC>ATC	p.T421I		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	421	PDZ.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				ATTCCTGATACCCCAGCAGAA	0.493													14	67					0	0	1	0	0	
CUZD1	50624	broad.mit.edu	37	10	124594392	124594392	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:124594392T>C	uc001lgq.2	-	7	1544	c.1212A>G	c.(1210-1212)TCA>TCG	p.S404S	CUZD1_uc001lgp.2_Silent_p.S123S|CUZD1_uc009yad.2_Silent_p.S123S|CUZD1_uc009yaf.2_Silent_p.S38S|CUZD1_uc001lgr.2_Silent_p.S123S|CUZD1_uc010qty.1_Silent_p.S123S|CUZD1_uc009yae.2_Silent_p.S123S|CUZD1_uc001lgs.2_Silent_p.S404S|CUZD1_uc010qtz.1_Silent_p.S404S	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	404	Extracellular (Potential).|ZP.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		TCTTTTCAAATGAATTGGATT	0.348													16	30					0	0	1	0	0	
C10orf88	80007	broad.mit.edu	37	10	124692137	124692137	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:124692137G>T	uc001lgw.2	-	6	1369	c.1144C>A	c.(1144-1146)CTT>ATT	p.L382I	C10orf88_uc001lgx.2_Missense_Mutation_p.L284I	NM_024942	NP_079218	Q9H8K7	CJ088_HUMAN	hypothetical protein LOC80007	382											0		all_neural(114;0.0765)|Lung NSC(174;0.163)|all_lung(145;0.205)		Colorectal(40;0.0686)|COAD - Colon adenocarcinoma(40;0.0735)		TTTTTAGAAAGAATCTTTTCC	0.303													11	24					0.00010058	0.000102942	1	1	0	
ACADSB	36	broad.mit.edu	37	10	124812651	124812651	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:124812651G>T	uc001lhb.2	+	10	1320	c.1203G>T	c.(1201-1203)GAG>GAT	p.E401D	ACADSB_uc010qub.1_Missense_Mutation_p.E299D	NM_001609	NP_001600	P45954	ACDSB_HUMAN	acyl-Coenzyme A dehydrogenase, short/branched	401					branched chain family amino acid catabolic process|fatty acid metabolic process	mitochondrial matrix	flavin adenine dinucleotide binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.0811)|COAD - Colon adenocarcinoma(40;0.0835)	L-Isoleucine(DB00167)	ACCCTGTGGAGAAATACTTCC	0.363													27	39					1.42536e-11	1.56543e-11	1	1	0	
C10orf137	26098	broad.mit.edu	37	10	127422070	127422070	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:127422070T>G	uc001liq.1	+	10	1519	c.1226T>G	c.(1225-1227)TTT>TGT	p.F409C	C10orf137_uc001lin.2_Missense_Mutation_p.F375C|C10orf137_uc001lio.1_Missense_Mutation_p.F375C|C10orf137_uc001lip.1_Missense_Mutation_p.F113C|C10orf137_uc001lir.2_5'Flank	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	409					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				ATTTTATCATTTTTGAAATCT	0.284													23	22					0	0	1	0	0	
C10orf137	26098	broad.mit.edu	37	10	127431743	127431743	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:127431743C>T	uc001liq.1	+	18	2781	c.2488C>T	c.(2488-2490)CCA>TCA	p.P830S	C10orf137_uc001lin.2_Missense_Mutation_p.P796S|C10orf137_uc001lio.1_Missense_Mutation_p.P796S|C10orf137_uc001lip.1_Missense_Mutation_p.P534S|C10orf137_uc001lis.1_Missense_Mutation_p.P156S	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	830					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				AAGCCAAAATCCAGAACACTA	0.353													18	45					0	0	1	0	0	
MMP21	118856	broad.mit.edu	37	10	127459031	127459031	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:127459031C>T	uc001liu.2	-	5	1109	c.1109G>A	c.(1108-1110)CGA>CAA	p.R370Q		NM_147191	NP_671724	Q8N119	MMP21_HUMAN	matrix metalloproteinase 21 preproprotein	370	Hemopexin-like 1.				proteolysis	extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				CCTATTGTTTCGATTTTCATA	0.448													41	96					0	0	1	0	0	
MKI67	4288	broad.mit.edu	37	10	129899683	129899683	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:129899683G>A	uc001lke.2	-	14	9739	c.9544C>T	c.(9544-9546)CTC>TTC	p.L3182F	MKI67_uc001lkf.2_Missense_Mutation_p.L2822F	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	3182					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTCTGCATGAGAACCTTCGCA	0.502													48	131					0	0	1	0	0	
MKI67	4288	broad.mit.edu	37	10	129901203	129901203	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:129901203T>G	uc001lke.2	-	13	9096	c.8901A>C	c.(8899-8901)AAA>AAC	p.K2967N	MKI67_uc001lkf.2_Missense_Mutation_p.K2607N|MKI67_uc009yav.1_Missense_Mutation_p.K2542N|MKI67_uc009yaw.1_Missense_Mutation_p.K2117N	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2967					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CGGGTTCTACTTTAGGGGCCC	0.502													73	71					0	0	1	0	0	
MKI67	4288	broad.mit.edu	37	10	129904177	129904177	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:129904177A>C	uc001lke.2	-	13	6122	c.5927T>G	c.(5926-5928)ATC>AGC	p.I1976S	MKI67_uc001lkf.2_Missense_Mutation_p.I1616S|MKI67_uc009yav.1_Missense_Mutation_p.I1551S|MKI67_uc009yaw.1_Missense_Mutation_p.I1126S	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1976	16 X 122 AA approximate repeats.|9.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TACTTCTGTGATTTTGTCATC	0.468													102	181					0	0	1	0	0	
MKI67	4288	broad.mit.edu	37	10	129905488	129905488	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:129905488T>C	uc001lke.2	-	13	4811	c.4616A>G	c.(4615-4617)CAC>CGC	p.H1539R	MKI67_uc001lkf.2_Missense_Mutation_p.H1179R|MKI67_uc009yav.1_Missense_Mutation_p.H1114R|MKI67_uc009yaw.1_Missense_Mutation_p.H689R	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1539	5.|16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTTGGGTGTGTGCATGGCTTT	0.483													30	328					0	0	1	0	0	
MKI67	4288	broad.mit.edu	37	10	129907415	129907415	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:129907415T>C	uc001lke.2	-	13	2884	c.2689A>G	c.(2689-2691)AAT>GAT	p.N897D	MKI67_uc001lkf.2_Missense_Mutation_p.N537D|MKI67_uc009yav.1_Missense_Mutation_p.N472D|MKI67_uc009yaw.1_Missense_Mutation_p.N47D	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	897					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				ATTTCTGTATTTGTTTCTTCA	0.398													57	101					0	0	1	0	0	
MGMT	4255	broad.mit.edu	37	10	131557541	131557541	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:131557541T>C	uc001lkh.2	+	4	469	c.443T>C	c.(442-444)TTA>TCA	p.L148S		NM_002412	NP_002403	P16455	MGMT_HUMAN	O-6-methylguanine-DNA methyltransferase	117										ovary(1)|breast(1)	2		all_cancers(35;9.44e-09)|all_epithelial(44;6.98e-08)|Lung NSC(174;0.0157)|all_lung(145;0.0201)|all_neural(114;0.0732)|Colorectal(57;0.0792)|Breast(234;0.167)		OV - Ovarian serous cystadenocarcinoma(35;0.00291)		TACCAGCAATTAGCAGCCCTG	0.527								Direct_reversal_of_damage					43	86					0	0	1	0	0	
EBF3	253738	broad.mit.edu	37	10	131760461	131760461	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:131760461G>A	uc001lki.1	-	4	444	c.385C>T	c.(385-387)CGC>TGC	p.R129C	EBF3_uc010qur.1_3'UTR	NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	129					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		TCTATGAGGCGAACATACAGA	0.502													28	49					0	0	1	0	0	
GLRX3	10539	broad.mit.edu	37	10	131943557	131943557	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:131943557G>T	uc001lkm.1	+	2	197	c.175G>T	c.(175-177)GAA>TAA	p.E59*	GLRX3_uc001lkn.1_Nonsense_Mutation_p.E59*|GLRX3_uc001lko.2_RNA	NM_006541	NP_006532	O76003	GLRX3_HUMAN	glutaredoxin 3	59	Thioredoxin.				cell redox homeostasis|negative regulation of cardiac muscle hypertrophy|regulation of the force of heart contraction	cell cortex	electron carrier activity|iron-sulfur cluster binding|metal ion binding|protein disulfide oxidoreductase activity				0		all_cancers(35;9.59e-07)|all_epithelial(44;1.48e-06)|Lung NSC(174;0.00566)|all_lung(145;0.00949)|Colorectal(57;0.142)|all_neural(114;0.16)|Breast(234;0.173)|Glioma(114;0.222)		OV - Ovarian serous cystadenocarcinoma(35;0.00218)		GTTAGCTAAAGAACTCCCTCA	0.358													19	43					1.33834e-09	1.43956e-09	1	1	0	
TCERG1L	256536	broad.mit.edu	37	10	132965127	132965127	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:132965127C>T	uc001lkp.2	-	5	964	c.878G>A	c.(877-879)CGA>CAA	p.R293Q	TCERG1L_uc009yax.1_RNA	NM_174937	NP_777597	Q5VWI1	TCRGL_HUMAN	transcription elongation regulator 1-like	293										large_intestine(2)|ovary(2)	4		all_cancers(35;1.22e-10)|all_epithelial(44;2.65e-09)|Lung NSC(174;0.00188)|all_lung(145;0.00307)|Melanoma(40;0.0179)|all_neural(114;0.0424)|Breast(234;0.0743)|Colorectal(57;0.09)		all cancers(32;0.000899)|OV - Ovarian serous cystadenocarcinoma(35;0.0021)|Epithelial(32;0.00276)		GCGGGCCACTCGGCCCCGCTC	0.512													4	35					0	0	1	0	0	
PPP2R2D	55844	broad.mit.edu	37	10	133758887	133758887	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:133758887C>T	uc001lks.2	+	5	888	c.645C>T	c.(643-645)TTC>TTT	p.F215F	PPP2R2D_uc001lkr.2_Silent_p.F21F|PPP2R2D_uc001lkt.2_Silent_p.F21F|PPP2R2D_uc009yay.2_Silent_p.F83F	NM_018461	NP_060931	Q66LE6	2ABD_HUMAN	protein phosphatase 2, regulatory subunit B,	248	WD 4.				cell division|exit from mitosis|mitosis|signal transduction	cytoplasm|protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			skin(1)	1		all_cancers(35;2.16e-12)|all_epithelial(44;2.77e-09)|Lung NSC(174;0.00237)|all_lung(145;0.00354)|Colorectal(31;0.0124)|Breast(234;0.023)|all_neural(114;0.0299)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.86e-05)|Epithelial(32;8.82e-05)|all cancers(32;0.000106)|BRCA - Breast invasive adenocarcinoma(275;0.21)		GCAACGTGTTCGTCTACAGCA	0.542													38	66					0	0	1	0	0	
BNIP3	664	broad.mit.edu	37	10	133784192	133784192	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:133784192T>G	uc001lkv.1	-	5	615	c.489A>C	c.(487-489)AAA>AAC	p.K163N	BNIP3_uc001lku.1_5'Flank|BNIP3_uc010qut.1_Missense_Mutation_p.K163N	NM_004052	NP_004043	Q12983	BNIP3_HUMAN	BCL2/adenovirus E1B 19kD-interacting protein 3	163					cellular response to cobalt ion|cellular response to hypoxia|cellular response to mechanical stimulus|chromatin remodeling|defense response to virus|DNA fragmentation involved in apoptotic nuclear change|induction of apoptosis|interspecies interaction between organisms|mitochondrial fragmentation involved in apoptosis|negative regulation of membrane potential|negative regulation of mitochondrial fusion|negative regulation of survival gene product expression|neuron apoptosis|positive regulation of mitochondrial fission|positive regulation of protein complex disassembly|positive regulation of release of cytochrome c from mitochondria|reactive oxygen species metabolic process|regulation of mitochondrial membrane permeability	dendrite|integral to mitochondrial outer membrane|nuclear envelope|nucleoplasm	GTPase binding|protein heterodimerization activity|protein homodimerization activity			lung(1)|skin(1)	2		all_cancers(35;4e-11)|all_epithelial(44;5.07e-08)|Ovarian(717;2.61e-05)|Lung NSC(174;0.00237)|all_lung(145;0.00354)|Breast(234;0.023)|all_neural(114;0.0299)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)		Epithelial(32;1.59e-12)|all cancers(32;3.75e-11)|OV - Ovarian serous cystadenocarcinoma(35;2.57e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		GAAGGAAAACTTTCAGAAATT	0.522													21	32					0	0	1	0	0	
DPYSL4	10570	broad.mit.edu	37	10	134016247	134016247	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:134016247T>G	uc009ybb.2	+	12	1533	c.1379T>G	c.(1378-1380)TTT>TGT	p.F460C		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	460					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		GGGAAGATGTTTGTCACCCCG	0.617													30	49					0	0	1	0	0	
LRRC27	80313	broad.mit.edu	37	10	134161693	134161693	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:134161693G>T	uc010quw.1	+	6	954	c.759G>T	c.(757-759)TGG>TGT	p.W253C	LRRC27_uc001llf.2_Missense_Mutation_p.W253C|LRRC27_uc010quv.1_Missense_Mutation_p.W253C|LRRC27_uc001llg.2_RNA|LRRC27_uc001lli.2_Missense_Mutation_p.W253C|LRRC27_uc001llj.2_Missense_Mutation_p.W191C|LRRC27_uc001llk.3_Missense_Mutation_p.W126C	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a	253										ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		CAGAGAACTGGCCCAGCGAGG	0.557													25	54					3.7963e-18	4.42695e-18	1	1	0	
KNDC1	85442	broad.mit.edu	37	10	135009295	135009295	+	Silent	SNP	G	A	A	rs148476238	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:135009295G>A	uc001llz.1	+	10	1705	c.1704G>A	c.(1702-1704)CCG>CCA	p.P568P	KNDC1_uc001lma.1_Silent_p.P503P|KNDC1_uc001lmb.1_5'Flank	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	568	KIND 2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GCAGTGCCCCGGAGCGGCCGT	0.687													3	10					0	0	1	0	0	
KNDC1	85442	broad.mit.edu	37	10	135015105	135015105	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:135015105C>T	uc001llz.1	+	17	3091	c.3090C>T	c.(3088-3090)TTC>TTT	p.F1030F	KNDC1_uc001lma.1_Silent_p.F965F|KNDC1_uc001lmb.1_Silent_p.F442F	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1030					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GGGGAAACTTCGAGGTGGGGT	0.657													33	70					0	0	1	0	0	
CYP2E1	1571	broad.mit.edu	37	10	135347293	135347293	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr10:135347293G>A	uc001lnj.1	+	6	892	c.859G>A	c.(859-861)GAC>AAC	p.D287N	CYP2E1_uc001lnk.1_Missense_Mutation_p.D150N|CYP2E1_uc009ybl.1_Missense_Mutation_p.D88N|CYP2E1_uc009ybm.1_Intron|CYP2E1_uc001lnl.1_Missense_Mutation_p.D88N	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	287					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	GTACACAATGGACGGTATCAC	0.542									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				33	79					0	0	1	0	0	
SCGB1C1	147199	broad.mit.edu	37	11	193746	193746	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:193746C>A	uc001loa.1	+	2	110	c.90C>A	c.(88-90)TTC>TTA	p.F30L		NM_145651	NP_663626	Q8TD33	SG1C1_HUMAN	secretoglobin, family 1C, member 1 precursor	30						extracellular region	binding			skin(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATGAGTTTTTCATGGACTTCC	0.557													7	77					0.00198382	0.00200883	1	1	0	
ATHL1	80162	broad.mit.edu	37	11	294327	294327	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:294327C>T	uc010qvu.1	+	13	1984	c.1869C>T	c.(1867-1869)AGC>AGT	p.S623S	ATHL1_uc001lor.3_Silent_p.S375S|ATHL1_uc001lou.3_Silent_p.S198S|ATHL1_uc001lov.3_Silent_p.S84S	NM_025092	NP_079368	Q32M88	ATHL1_HUMAN	ATH1, acid trehalase-like 1	623					carbohydrate metabolic process		hydrolase activity, acting on glycosyl bonds			liver(1)|central_nervous_system(1)|skin(1)	3		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.38e-28)|Epithelial(43;3.25e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		CCAGAGTGAGCGTCTCCGGCA	0.617													30	89					0	0	1	0	0	
B4GALNT4	338707	broad.mit.edu	37	11	380147	380147	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:380147G>A	uc001lpb.2	+	17	2669	c.2660G>A	c.(2659-2661)CGA>CAA	p.R887Q		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	887	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TACCTGAGACGAACCGGGAAC	0.687													8	17					0	0	1	0	0	
LRRC56	115399	broad.mit.edu	37	11	554059	554059	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:554059A>G	uc010qvz.1	+	14	1917	c.1412A>G	c.(1411-1413)GAC>GGC	p.D471G		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	471										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGGTCGACAGACCTGCAGTCC	0.692													30	78					0	0	1	0	0	
MUC6	4588	broad.mit.edu	37	11	1016585	1016585	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:1016585G>T	uc001lsw.2	-	31	6267	c.6216C>A	c.(6214-6216)AGC>AGA	p.S2072R		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	2072	Ser-rich.|Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGTGGGTTTGGCTGGTCCCAC	0.572													82	141					8.6838e-40	1.07605e-39	1	1	0	
MUC6	4588	broad.mit.edu	37	11	1026380	1026380	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:1026380G>T	uc001lsw.2	-	20	2544	c.2493C>A	c.(2491-2493)TTC>TTA	p.F831L		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	831					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGACCCCCGAGAACTCACATG	0.647													6	20					3.59834e-05	3.69903e-05	1	1	0	
MUC6	4588	broad.mit.edu	37	11	1027310	1027310	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:1027310A>G	uc001lsw.2	-	17	2240	c.2189T>C	c.(2188-2190)TTC>TCC	p.F730S		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	730					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGCCAGGATGAACTTGTAACC	0.657													72	83					0	0	1	0	0	
MUC6	4588	broad.mit.edu	37	11	1027763	1027763	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:1027763C>T	uc001lsw.2	-	16	1954	c.1903G>A	c.(1903-1905)GCC>ACC	p.A635T		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	635					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TCGCCCAGGGCGGCACAGATG	0.652													5	18					0	0	1	0	0	
MUC5B	727897	broad.mit.edu	37	11	1268507	1268507	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:1268507C>T	uc009ycr.1	+	50	12107	c.11981C>T	c.(11980-11982)ACG>ATG	p.T3994M	MUC5B_uc001ltb.2_Missense_Mutation_p.T3469M	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3466	7 X Cys-rich subdomain repeats.|Thr-rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGTCCCCACACGGTGCGCACA	0.677													28	61					0	0	1	0	0	
MUC5B	727897	broad.mit.edu	37	11	1271226	1271226	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:1271226G>A	uc009ycr.1	+	51	14661	c.14535G>A	c.(14533-14535)ACG>ACA	p.T4845T	MUC5B_uc001ltb.2_Silent_p.T4375T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4372	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGGCCACCACGACAAGGGCCA	0.632													56	101					0	0	1	0	0	
TOLLIP	54472	broad.mit.edu	37	11	1311585	1311585	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:1311585G>A	uc001lte.2	-	3	349	c.238C>T	c.(238-240)CGC>TGC	p.R80C	TOLLIP_uc001ltd.2_Missense_Mutation_p.R11C|TOLLIP_uc009ycu.2_Intron|TOLLIP_uc001ltf.2_Missense_Mutation_p.R30C	NM_019009	NP_061882	Q9H0E2	TOLIP_HUMAN	toll interacting protein	80	C2.				cell-cell signaling|inflammatory response|innate immune response|intracellular signal transduction|leukocyte activation|phosphorylation	cytosol|interleukin-1 receptor complex|interleukin-18 receptor complex	kinase binding|signal transducer activity|Toll-like receptor binding				0		all_cancers(49;7.62e-05)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.00152)|Lung(200;0.09)|LUSC - Lung squamous cell carcinoma(625;0.107)		TAGCCCAGGCGCAGTCGGCAG	0.597													13	30					0	0	1	0	0	
DUSP8	1850	broad.mit.edu	37	11	1578801	1578801	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:1578801G>A	uc001lts.2	-	7	953	c.825C>T	c.(823-825)TTC>TTT	p.F275F		NM_004420	NP_004411	Q13202	DUS8_HUMAN	dual specificity phosphatase 8	275	Tyrosine-protein phosphatase.				inactivation of MAPK activity	cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		all_epithelial(84;0.000134)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000621)|Lung(200;0.0687)|LUSC - Lung squamous cell carcinoma(625;0.0825)		TGTCCTTCACGAACCTGCGGG	0.711													4	9					0	0	1	0	0	
KCNQ1	3784	broad.mit.edu	37	11	2609948	2609948	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:2609948G>T	uc001lwn.2	+	10	1365	c.1257G>T	c.(1255-1257)AAG>AAT	p.K419N	KCNQ1_uc009ydp.1_Missense_Mutation_p.K203N|KCNQ1_uc001lwo.2_Missense_Mutation_p.K292N	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	419	Cytoplasmic (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	TTTAGGTAAAGAAAAAAAAGT	0.562													5	18					0.00116845	0.00118508	1	1	0	
CARS	833	broad.mit.edu	37	11	3039178	3039178	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:3039178A>G	uc001lxh.2	-	14	1461	c.1387T>C	c.(1387-1389)TTC>CTC	p.F463L	CARS_uc001lxe.2_Missense_Mutation_p.F453L|CARS_uc001lxf.2_Missense_Mutation_p.F546L|CARS_uc001lxg.2_Missense_Mutation_p.F463L|CARS_uc010qxo.1_Missense_Mutation_p.F546L|CARS_uc010qxp.1_Missense_Mutation_p.F476L	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	463					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	ACATTTAAGAAAAACTCCTGA	0.373			T	ALK	ALCL								14	28					0	0	1	0	0	
NUP98	4928	broad.mit.edu	37	11	3716702	3716702	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:3716702A>G	uc001lyh.2	-	26	4435	c.4144T>C	c.(4144-4146)TTT>CTT	p.F1382L	NUP98_uc001lyi.2_Missense_Mutation_p.F1382L|NUP98_uc001lyg.2_Missense_Mutation_p.F347L	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1399					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		AACAGAGCAAAGATGCGCAGT	0.483			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								77	183					0	0	1	0	0	
OR52M1	119772	broad.mit.edu	37	11	4567211	4567211	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:4567211T>C	uc010qyf.1	+	1	791	c.791T>C	c.(790-792)ATT>ACT	p.I264T		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCTTCCCTGATTCACCGATTT	0.498													36	72					0	0	1	0	0	
C11orf40	143501	broad.mit.edu	37	11	4593454	4593454	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:4593454C>T	uc010qyg.1	-	3	379	c.379G>A	c.(379-381)GCA>ACA	p.A127T		NM_144663	NP_653264	Q8WZ69	CK040_HUMAN	hypothetical protein LOC143501	127										ovary(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;4.28e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		TGTTTCATTGCTCCCACAGGT	0.438													17	58					0	0	1	0	0	
OR52I2	143502	broad.mit.edu	37	11	4608256	4608256	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:4608256A>G	uc010qyh.1	+	1	214	c.214A>G	c.(214-216)AAC>GAC	p.N72D		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	72	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCTGTTAGGAAACACCATCAT	0.507													74	184					0	0	1	0	0	
TRIM68	55128	broad.mit.edu	37	11	4621672	4621672	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:4621672G>A	uc001lzf.1	-	7	1530	c.1292C>T	c.(1291-1293)GCC>GTC	p.A431V	TRIM68_uc001lzg.1_Missense_Mutation_p.A208V|TRIM68_uc010qyj.1_RNA	NM_018073	NP_060543	Q6AZZ1	TRI68_HUMAN	ring finger protein 137	431	B30.2/SPRY.				protein autoubiquitination|regulation of androgen receptor signaling pathway	Golgi apparatus|nucleolus|perinuclear region of cytoplasm	androgen receptor binding|histone acetyltransferase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;9.49e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		AATGTCATGGGCCTCATAATC	0.552													22	63					0	0	1	0	0	
OR51F1	256892	broad.mit.edu	37	11	4790838	4790838	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:4790838A>G	uc010qyl.1	-	1	310	c.310T>C	c.(310-312)TTT>CTT	p.F104L		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	104						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		TGAAGAAAAAACATCTGGACA	0.443													27	39					0	0	1	0	0	
OR51S1	119692	broad.mit.edu	37	11	4870013	4870013	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:4870013C>T	uc010qyo.1	-	1	426	c.426G>A	c.(424-426)GCG>GCA	p.A142A		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	142	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGTGAGGAGCGCTGGGTAGT	0.532													49	96					0	0	1	0	0	
OR51T1	401665	broad.mit.edu	37	11	4904076	4904076	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:4904076G>A	uc010qyp.1	+	1	1028	c.1028G>A	c.(1027-1029)GGT>GAT	p.G343D		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	316	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGTTCATGGGGTTTTAATGTG	0.473													21	44					0	0	1	0	0	
OR52A5	390054	broad.mit.edu	37	11	5153774	5153774	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5153774G>T	uc010qyx.1	-	1	99	c.99C>A	c.(97-99)TTC>TTA	p.F33L		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		ACATGGCAGAGAAAGGAATCC	0.403													25	68					6.12954e-19	7.17843e-19	1	1	0	
OR52A1	23538	broad.mit.edu	37	11	5173501	5173501	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5173501G>A	uc010qyy.1	-	1	99	c.99C>T	c.(97-99)TTC>TTT	p.F33F		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAATGGCACAGAATGGAATCC	0.453													23	41					0	0	1	0	0	
HBG2	3048	broad.mit.edu	37	11	5275593	5275593	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5275593G>T	uc001mai.1	-	2	681	c.244C>A	c.(244-246)CTC>ATC	p.L82I	HBG2_uc001mak.1_RNA|HBG2_uc001maj.1_Missense_Mutation_p.L82I	NM_000559	NP_000550	P69892	HBG2_HUMAN	A-gamma globin	82					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTGCCCTTGAGATCATCCAGG	0.527													12	198					4.3838e-07	4.58765e-07	1	1	0	
OR51B4	79339	broad.mit.edu	37	11	5322320	5322320	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5322320G>T	uc010qza.1	-	1	857	c.857C>A	c.(856-858)CCT>CAT	p.P286H	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATAAATGATAGGATTCACGAA	0.423													25	50					9.80776e-20	1.15405e-19	1	1	0	
OR51B5	282763	broad.mit.edu	37	11	5364321	5364321	+	Missense_Mutation	SNP	C	T	T	rs148591287	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5364321C>T	uc001map.1	-	1	434	c.434G>A	c.(433-435)GGA>GAA	p.G145E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.G145E	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATCAGAACTCCCAGCCCAAT	0.443													29	66					0	0	1	0	0	
OR51B6	390058	broad.mit.edu	37	11	5373216	5373216	+	Missense_Mutation	SNP	G	A	A	rs112049705		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5373216G>A	uc010qzb.1	+	1	479	c.479G>A	c.(478-480)CGC>CAC	p.R160H	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATAGTTGTTCGCCTACACTGG	0.478													35	70					0	0	1	0	0	
OR51B6	390058	broad.mit.edu	37	11	5373534	5373534	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5373534T>C	uc010qzb.1	+	1	797	c.797T>C	c.(796-798)GTT>GCT	p.V266A	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGAAAGCATGTTCCTCATGTC	0.408													60	99					0	0	1	0	0	
OR51M1	390059	broad.mit.edu	37	11	5410951	5410951	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5410951C>T	uc010qzc.1	+	1	323	c.323C>T	c.(322-324)GCG>GTG	p.A108V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	108						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TACTTTGGAGCGTGTCAAATC	0.522													66	109					0	0	1	0	0	
OR51M1	390059	broad.mit.edu	37	11	5411514	5411514	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5411514C>T	uc010qzc.1	+	1	886	c.886C>T	c.(886-888)CCT>TCT	p.P296S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	296						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTTTTTGTGCCTCCCATGCT	0.468													9	29					0	0	1	0	0	
UBQLN3	50613	broad.mit.edu	37	11	5529786	5529786	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5529786T>G	uc001may.1	-	2	1089	c.1003A>C	c.(1003-1005)AAC>CAC	p.N335H	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	335										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCAGAAAGTTTGGAAACCTA	0.507													16	54					0	0	1	0	0	
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5631384	5631384	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5631384C>A	uc001mbf.2	+	6	1111	c.867C>A	c.(865-867)TTC>TTA	p.F289L	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Missense_Mutation_p.F235L|TRIM6_uc010qzj.1_Missense_Mutation_p.F86L|TRIM6_uc001mbc.1_Missense_Mutation_p.F261L|TRIM6_uc001mbe.2_Missense_Mutation_p.F86L|TRIM6_uc010qzk.1_Missense_Mutation_p.F86L|TRIM6_uc010qzl.1_Missense_Mutation_p.F86L|TRIM6_uc001mbd.2_Missense_Mutation_p.F289L|TRIM6_uc001mbg.1_Missense_Mutation_p.F86L|TRIM6_uc009yep.1_Missense_Mutation_p.F86L	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	289						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		GGAGTGAGTTCTGGACCCTGA	0.522													30	43					1.39806e-14	1.58014e-14	1	1	0	
TRIM5	85363	broad.mit.edu	37	11	5701382	5701382	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5701382A>G	uc001mbm.1	-	2	283	c.26T>C	c.(25-27)GTA>GCA	p.V9A	TRIM5_uc001mbq.1_Missense_Mutation_p.V9A|TRIM5_uc001mbl.1_RNA|TRIM5_uc001mbn.2_Missense_Mutation_p.V9A|TRIM5_uc001mbo.2_Missense_Mutation_p.V9A|TRIM5_uc001mbp.2_Missense_Mutation_p.V9A	NM_033034	NP_149023	Q9C035	TRIM5_HUMAN	tripartite motif protein TRIM5 isoform alpha	9					interspecies interaction between organisms|protein trimerization|response to virus	cytoplasm|cytoplasmic mRNA processing body	ligase activity|protein binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)|Lung NSC(207;0.138)|all_lung(207;0.221)		Epithelial(150;7.21e-09)|BRCA - Breast invasive adenocarcinoma(625;0.139)		CTCCTCCTTTACATTAACCAG	0.552													21	61					0	0	1	0	0	
TRIM22	10346	broad.mit.edu	37	11	5730393	5730393	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5730393G>T	uc001mbr.2	+	8	1289	c.1012G>T	c.(1012-1014)GAT>TAT	p.D338Y	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|TRIM22_uc009yes.2_Missense_Mutation_p.D334Y|TRIM22_uc010qzm.1_Missense_Mutation_p.D166Y|TRIM22_uc009yeu.2_Missense_Mutation_p.D149Y|OR56B1_uc001mbs.1_Intron|OR56B1_uc009yev.1_Intron	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	338	B30.2/SPRY.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		AAATCCATGTGATTTTTCTGC	0.443													31	96					7.68411e-24	9.21644e-24	1	1	0	
OR52N1	79473	broad.mit.edu	37	11	5809177	5809177	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5809177C>A	uc010qzo.1	-	1	870	c.870G>T	c.(868-870)ATG>ATT	p.M290I	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		CAATAGGGTTCATTGTGGGAG	0.398													57	25					6.60958e-23	7.89986e-23	1	1	0	
OR52E8	390079	broad.mit.edu	37	11	5878752	5878752	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5878752G>A	uc010qzr.1	-	1	181	c.181C>T	c.(181-183)CTC>TTC	p.L61F	TRIM5_uc001mbq.1_Intron	NM_001005168	NP_001005168	Q6IFG1	O52E8_HUMAN	olfactory receptor, family 52, subfamily E,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.114)		Epithelial(150;2.37e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCTCATGGAGACTCTGCTCA	0.468													36	129					0	0	1	0	0	
OR52E4	390081	broad.mit.edu	37	11	5905807	5905807	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5905807C>A	uc010qzs.1	+	1	285	c.285C>A	c.(283-285)AGC>AGA	p.S95R	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAGAGATCAGCTTTGGGGGAT	0.458													42	89					1.47197e-15	1.68038e-15	1	1	0	
OR52E4	390081	broad.mit.edu	37	11	5906275	5906275	+	Nonsense_Mutation	SNP	C	A	A	rs149421594		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:5906275C>A	uc010qzs.1	+	1	753	c.753C>A	c.(751-753)TGC>TGA	p.C251*	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTATGCTGTGCTTTTACACAC	0.418													33	92					4.65686e-17	5.37613e-17	1	1	0	
OR56A1	120796	broad.mit.edu	37	11	6048000	6048000	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6048000T>G	uc010qzw.1	-	1	935	c.935A>C	c.(934-936)AAG>ACG	p.K312T		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGCAGTAACTTCTGAATTCC	0.433													27	33					0	0	1	0	0	
CNGA4	1262	broad.mit.edu	37	11	6261346	6261346	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6261346C>T	uc001mco.2	+	4	429	c.322C>T	c.(322-324)CGC>TGC	p.R108C	CNGA4_uc010raa.1_Intron|CNGA4_uc001mcn.2_Missense_Mutation_p.R68C	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	108	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATCTCGAGTCGCTACGTTCG	0.607													57	113					0	0	1	0	0	
CCKBR	887	broad.mit.edu	37	11	6290930	6290930	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6290930C>T	uc001mcp.2	+	2	376	c.183C>T	c.(181-183)TAC>TAT	p.Y61Y	CCKBR_uc001mcq.2_Translation_Start_Site|CCKBR_uc001mcr.2_Silent_p.Y61Y|CCKBR_uc001mcs.2_Silent_p.Y61Y	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	61	Helical; Name=1; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TCACTCTTTACGCAGTGATCT	0.532													35	76					0	0	1	0	0	
CCKBR	887	broad.mit.edu	37	11	6291065	6291065	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6291065T>G	uc001mcp.2	+	2	511	c.318T>G	c.(316-318)GCT>GCG	p.A106A	CCKBR_uc001mcq.2_Silent_p.A34A|CCKBR_uc001mcr.2_Silent_p.A106A|CCKBR_uc001mcs.2_Silent_p.A106A	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	106	Helical; Name=2; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TGGCTGTGGCTTGCATGCCCT	0.592													29	80					0	0	1	0	0	
SMPD1	6609	broad.mit.edu	37	11	6412632	6412632	+	Missense_Mutation	SNP	C	T	T	rs140202512	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6412632C>T	uc001mcw.2	+	2	511	c.337C>T	c.(337-339)CGC>TGC	p.R113C	SMPD1_uc001mcv.1_RNA|SMPD1_uc009yex.2_RNA|SMPD1_uc001mcx.2_Missense_Mutation_p.R113C|SMPD1_uc009yew.2_Missense_Mutation_p.R112C	NM_000543	NP_000534	P17405	ASM_HUMAN	sphingomyelin phosphodiesterase 1, acid	111	Saposin B-type.				cell death|ceramide biosynthetic process|negative regulation of MAP kinase activity|nervous system development|positive regulation of protein dephosphorylation|signal transduction|sphingomyelin catabolic process|termination of signal transduction	lysosome	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;4.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)	Desipramine(DB01151)	CAATGTGGCTCGCGTGGGCTC	0.592													13	38					0	0	1	0	0	
SMPD1	6609	broad.mit.edu	37	11	6414487	6414487	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6414487G>A	uc001mcw.2	+	3	1307	c.1133G>A	c.(1132-1134)CGC>CAC	p.R378H	SMPD1_uc001mcv.1_RNA|SMPD1_uc009yex.2_Intron|SMPD1_uc001mcx.2_Intron|SMPD1_uc009yew.2_Missense_Mutation_p.R377H	NM_000543	NP_000534	P17405	ASM_HUMAN	sphingomyelin phosphodiesterase 1, acid	376			R -> H (in NPDB; also found in a patient with an intermediate form).|R -> L (in NPDB).		cell death|ceramide biosynthetic process|negative regulation of MAP kinase activity|nervous system development|positive regulation of protein dephosphorylation|signal transduction|sphingomyelin catabolic process|termination of signal transduction	lysosome	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;4.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)	Desipramine(DB01151)	CCCGGTCTCCGCCTCATCTCT	0.517													14	21					0	0	1	0	0	
ARFIP2	23647	broad.mit.edu	37	11	6500092	6500092	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6500092C>T	uc001mdk.2	-	5	550	c.413G>A	c.(412-414)CGC>CAC	p.R138H	ARFIP2_uc001mdl.2_Missense_Mutation_p.R138H|ARFIP2_uc010ral.1_Missense_Mutation_p.R100H|ARFIP2_uc010ram.1_Missense_Mutation_p.R44H|ARFIP2_uc010ran.1_Missense_Mutation_p.R171H|ARFIP2_uc001mdm.2_RNA|FXC1_uc001mdn.3_5'Flank|FXC1_uc001mdo.3_5'Flank	NM_012402	NP_036534	P53365	ARFP2_HUMAN	ADP-ribosylation factor interacting protein 2	138	AH.				actin cytoskeleton organization|cellular component movement|lamellipodium assembly|ruffle organization|small GTPase mediated signal transduction	cell cortex|plasma membrane|ruffle	GTP binding|GTP-dependent protein binding|Rac GTPase binding				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;3.41e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTCATACTTGCGCTTCGTCTC	0.572													12	33					0	0	1	0	0	
DNHD1	144132	broad.mit.edu	37	11	6540971	6540971	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6540971G>A	uc001mdw.3	+	8	2098	c.1534G>A	c.(1534-1536)GCC>ACC	p.A512T	DNHD1_uc001mdp.2_Missense_Mutation_p.A512T|DNHD1_uc001mdq.2_Missense_Mutation_p.A201T	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	512					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		GCAAGCAGAGGCCTGGTGGCT	0.517													20	52					0	0	1	0	0	
DNHD1	144132	broad.mit.edu	37	11	6588290	6588290	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6588290C>T	uc001mdw.3	+	36	12115	c.11551C>T	c.(11551-11553)CGA>TGA	p.R3851*	DNHD1_uc001mea.3_Nonsense_Mutation_p.R120*|DNHD1_uc001meb.2_Nonsense_Mutation_p.R119*|DNHD1_uc001mec.2_Nonsense_Mutation_p.R119*|DNHD1_uc010rao.1_Nonsense_Mutation_p.R109*|DNHD1_uc009yfg.2_5'Flank	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	3851					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		GGCACCCTATCGACCTGTGGT	0.522													35	63					0	0	1	0	0	
DNHD1	144132	broad.mit.edu	37	11	6591310	6591310	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6591310C>G	uc001mdw.3	+	40	13499	c.12935C>G	c.(12934-12936)GCT>GGT	p.A4312G	DNHD1_uc001mea.3_Missense_Mutation_p.A581G|DNHD1_uc001meb.2_Missense_Mutation_p.A580G|DNHD1_uc001mec.2_Missense_Mutation_p.A580G|DNHD1_uc010rao.1_Missense_Mutation_p.A570G|DNHD1_uc009yfg.2_5'UTR	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	4312					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		AATCCCCGTGCTGCCATGCAA	0.552													18	68					0	0	1	0	0	
OR2AG2	338755	broad.mit.edu	37	11	6789862	6789862	+	Silent	SNP	G	A	A	rs145583606	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6789862G>A	uc001meq.1	-	1	327	c.327C>T	c.(325-327)AGC>AGT	p.S109S		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GGTCCTCAGCGCTACCCATTG	0.522													26	68					0	0	1	0	0	
OR6A2	8590	broad.mit.edu	37	11	6816380	6816380	+	Missense_Mutation	SNP	G	T	T	rs143570851	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6816380G>T	uc001mes.1	-	1	760	c.560C>A	c.(559-561)TCT>TAT	p.S187Y		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GAGCAATGGAGAGACATCACA	0.463													55	89					1.70205e-38	2.10718e-38	1	1	0	
OR10A5	144124	broad.mit.edu	37	11	6867289	6867289	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6867289G>A	uc001met.1	+	1	376	c.376G>A	c.(376-378)GCC>ACC	p.A126T		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCGCTATGTGGCCATCTGCAG	0.522													59	118					0	0	1	0	0	
ZNF215	7762	broad.mit.edu	37	11	6977697	6977697	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:6977697A>G	uc001mey.2	+	7	2077	c.1489A>G	c.(1489-1491)AAA>GAA	p.K497E	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Missense_Mutation_p.K259E|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	497	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		GGAATGTAGTAAAGCCTTCAA	0.373													26	66					0	0	1	0	0	
ZNF214	7761	broad.mit.edu	37	11	7021924	7021924	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:7021924G>T	uc001mfa.2	-	3	1293	c.990C>A	c.(988-990)TTC>TTA	p.F330L	ZNF214_uc010ray.1_Missense_Mutation_p.F330L|ZNF214_uc009yfh.1_Missense_Mutation_p.F330L	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	330	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		CAATTTTATAGAATTTCTCTT	0.383													32	70					5.90632e-09	6.31323e-09	1	1	0	
NLRP14	338323	broad.mit.edu	37	11	7063729	7063729	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:7063729G>T	uc001mfb.1	+	4	795	c.472G>T	c.(472-474)GAT>TAT	p.D158Y		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	158					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		TGCAGAGAAAGATAGAAAACT	0.428													26	66					6.12954e-19	7.17843e-19	1	1	0	
SYT9	143425	broad.mit.edu	37	11	7439350	7439350	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:7439350A>G	uc001mfe.2	+	5	1565	c.1328A>G	c.(1327-1329)GAC>GGC	p.D443G	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	443	Cytoplasmic (Potential).|C2 2.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		GCAGTCATGGACTATGACCGG	0.502													36	56					0	0	1	0	0	
OR10A6	390093	broad.mit.edu	37	11	7949332	7949332	+	Missense_Mutation	SNP	C	T	T	rs143603778		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:7949332C>T	uc010rbh.1	-	1	878	c.878G>A	c.(877-879)CGA>CAA	p.R293Q		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTCACTATTTCGCAAACTGTA	0.418													38	70					0	0	1	0	0	
OR10A6	390093	broad.mit.edu	37	11	7949936	7949936	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:7949936T>G	uc010rbh.1	-	1	274	c.274A>C	c.(274-276)ATT>CTT	p.I92L		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CCAAAAGAAATTGTAGTTTTT	0.433													68	125					0	0	1	0	0	
STK33	65975	broad.mit.edu	37	11	8496386	8496386	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:8496386C>A	uc001mgi.1	-	1	986	c.67G>T	c.(67-69)GAT>TAT	p.D23Y	STK33_uc001mgj.1_Missense_Mutation_p.D23Y|STK33_uc001mgk.1_Missense_Mutation_p.D23Y|STK33_uc010rbn.1_Intron|STK33_uc001mgl.3_Intron|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	23						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		CAAAGTACATCTTTCTGAGAA	0.383													52	117					4.6707e-30	5.70484e-30	1	1	0	
ST5	6764	broad.mit.edu	37	11	8715670	8715670	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:8715670T>G	uc001mgt.2	-	20	3573	c.3387A>C	c.(3385-3387)AAA>AAC	p.K1129N	ST5_uc009yfr.2_Missense_Mutation_p.K709N|ST5_uc001mgu.2_Missense_Mutation_p.K709N|ST5_uc001mgv.2_Missense_Mutation_p.K1129N|ST5_uc010rbp.1_Missense_Mutation_p.K642N	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	1129					positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		GAAACTTCATTTTGTTGCCTG	0.542													19	62					0	0	1	0	0	
ST5	6764	broad.mit.edu	37	11	8724176	8724176	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:8724176C>T	uc001mgt.2	-	14	2849	c.2663G>A	c.(2662-2664)CGA>CAA	p.R888Q	ST5_uc009yfr.2_Missense_Mutation_p.R468Q|ST5_uc001mgu.2_Missense_Mutation_p.R468Q|ST5_uc001mgv.2_Missense_Mutation_p.R888Q|ST5_uc010rbp.1_Missense_Mutation_p.R401Q|ST5_uc009yfs.2_RNA	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	888	DENN.				positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		GGCAAAGATTCGGATGAGCTG	0.597													33	59					0	0	1	0	0	
ST5	6764	broad.mit.edu	37	11	8739286	8739286	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:8739286A>G	uc001mgt.2	-	5	1815	c.1629_splice	c.e5+1	p.Q543_splice	ST5_uc009yfr.2_Splice_Site_p.Q123_splice|ST5_uc001mgu.2_Splice_Site_p.Q123_splice|ST5_uc001mgv.2_Splice_Site_p.Q543_splice|ST5_uc010rbq.1_Splice_Site|ST5_uc010rbp.1_Splice_Site_p.Q56_splice	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1						positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		GGGCTGAGTTACCTGTGTGGG	0.572													14	34					0	0	1	0	0	
NRIP3	56675	broad.mit.edu	37	11	9007350	9007350	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:9007350G>T	uc001mhg.2	-	4	584	c.470C>A	c.(469-471)TCT>TAT	p.S157Y	NRIP3_uc010rbu.1_Intron	NM_020645	NP_065696	Q9NQ35	NRIP3_HUMAN	nuclear receptor interacting protein 3	157					proteolysis		aspartic-type endopeptidase activity				0				Epithelial(150;4.77e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0241)		CCGGGGTAGAGAAAGCTTTTC	0.512													44	80					3.54909e-21	4.20329e-21	1	1	0	
SCUBE2	57758	broad.mit.edu	37	11	9051490	9051490	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:9051490G>T	uc001mhh.1	-	18	2437	c.2357C>A	c.(2356-2358)TCT>TAT	p.S786Y	SCUBE2_uc001mhi.1_Missense_Mutation_p.S758Y|SCUBE2_uc001mhj.1_Missense_Mutation_p.S660Y	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	786						extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		TCCTGGGCAAGAAACACAATT	0.428													48	121					1.62263e-30	1.98456e-30	1	1	0	
DENND5A	23258	broad.mit.edu	37	11	9166618	9166618	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:9166618C>A	uc001mhl.2	-	18	3301	c.3046G>T	c.(3046-3048)GAT>TAT	p.D1016Y	DENND5A_uc001mhk.2_Missense_Mutation_p.D359Y|DENND5A_uc010rbw.1_Missense_Mutation_p.D1016Y	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	1016	PLAT.									liver(1)	1						CCAGAGTTATCATGGCCAATC	0.443													34	104					2.47316e-13	2.76362e-13	1	1	0	
ZNF143	7702	broad.mit.edu	37	11	9522663	9522663	+	Silent	SNP	C	T	T	rs147334022		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:9522663C>T	uc001mhr.2	+	11	1111	c.993C>T	c.(991-993)TTC>TTT	p.F331F	ZNF143_uc009yfu.2_Silent_p.F330F|ZNF143_uc010rby.1_Silent_p.F300F	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	331	C2H2-type 4.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		AGTGTCCCTTCGAAGGCTGCG	0.403													30	81					0	0	1	0	0	
CTR9	9646	broad.mit.edu	37	11	10789639	10789639	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:10789639C>T	uc001mja.2	+	15	2040	c.1891C>T	c.(1891-1893)CGT>TGT	p.R631C		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	631	TPR 13.				histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		TCATCAAGATCGTGCTCTGGC	0.358													25	58					0	0	1	0	0	
CSNK2A1P	283106	broad.mit.edu	37	11	11374429	11374429	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:11374429G>A	uc001mjp.2	-	1	476	c.238C>T	c.(238-240)CGT>TGT	p.R80C	GALNTL4_uc001mjo.2_Intron	NM_177559	NP_808227			casein kinase II alpha 1 subunit isoform a												0						TTTATTTCACGCTTAATTTTC	0.378													41	93					0	0	1	0	0	
USP47	55031	broad.mit.edu	37	11	11971915	11971915	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:11971915C>T	uc001mjs.2	+	24	4232	c.3469C>T	c.(3469-3471)CGT>TGT	p.R1157C	USP47_uc001mjr.2_Missense_Mutation_p.R1089C|USP47_uc009ygi.2_5'UTR	NM_017944	NP_060414	Q96K76	UBP47_HUMAN	ubiquitin specific protease 47	1177					base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		TTGTAGGTTTCGTCTAAGGAA	0.308													17	34					0	0	1	0	0	
USP47	55031	broad.mit.edu	37	11	11971986	11971986	+	Translation_Start_Site	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:11971986T>G	uc009ygi.2	+	1	76	c.-127T>G	c.(-129--125)ATTAA>ATGAA		USP47_uc001mjr.2_Missense_Mutation_p.I1112M|USP47_uc001mjs.2_Missense_Mutation_p.I1180M			Q96K76	UBP47_HUMAN	RecName: Full=Ubiquitin carboxyl-terminal hydrolase 47;          EC=3.1.2.15; AltName: Full=Ubiquitin thioesterase 47; AltName: Full=Ubiquitin-specific-processing protease 47; AltName: Full=Deubiquitinating enzyme 47;						base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		AAGAAGATATTAATATTTCCA	0.318													36	64					0	0	1	0	0	
MICAL2	9645	broad.mit.edu	37	11	12231140	12231140	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:12231140T>C	uc001mjz.2	+	6	974	c.686T>C	c.(685-687)CTG>CCG	p.L229P	MICAL2_uc010rch.1_Missense_Mutation_p.L229P|MICAL2_uc001mka.2_Missense_Mutation_p.L229P|MICAL2_uc010rci.1_Missense_Mutation_p.L229P|MICAL2_uc001mkb.2_Missense_Mutation_p.L229P|MICAL2_uc001mkc.2_Missense_Mutation_p.L229P|MICAL2_uc001mkd.2_Missense_Mutation_p.L58P	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	229						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		AGGAACACCCTGGAAGGTGAA	0.527													19	61					0	0	1	0	0	
MICALCL	84953	broad.mit.edu	37	11	12315174	12315174	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:12315174C>T	uc001mkg.1	+	3	487	c.196C>T	c.(196-198)CGG>TGG	p.R66W		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	66	Interaction with MAPK1 (By similarity).				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		CCCAAACTTTCGGAGGCGAGC	0.552													51	153					0	0	1	0	0	
PARVA	55742	broad.mit.edu	37	11	12535563	12535563	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:12535563A>G	uc001mki.2	+	10	867	c.818A>G	c.(817-819)AAC>AGC	p.N273S		NM_018222	NP_060692	Q9NVD7	PARVA_HUMAN	parvin, alpha	273	CH 2.				cell adhesion|cell junction assembly|cilium morphogenesis	actin cytoskeleton|cytosol|focal adhesion	actin binding			breast(3)	3				Epithelial(150;0.00624)		ACTTTCGTGAACAAGCACCTG	0.572													15	27					0	0	1	0	0	
ARNTL	406	broad.mit.edu	37	11	13380010	13380010	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:13380010G>A	uc001mkr.2	+	8	659	c.251G>A	c.(250-252)CGT>CAT	p.R84H	ARNTL_uc001mko.2_Missense_Mutation_p.R41H|ARNTL_uc001mkp.2_Missense_Mutation_p.R84H|ARNTL_uc001mkq.2_Missense_Mutation_p.R84H|ARNTL_uc001mks.2_Missense_Mutation_p.R41H|ARNTL_uc001mkt.2_Missense_Mutation_p.R84H|ARNTL_uc001mku.2_RNA|ARNTL_uc009ygm.1_Missense_Mutation_p.R41H|ARNTL_uc001mkv.1_Missense_Mutation_p.R41H|ARNTL_uc001mkw.2_Missense_Mutation_p.R41H|ARNTL_uc001mkx.2_Missense_Mutation_p.R82H	NM_001178	NP_001169	O00327	BMAL1_HUMAN	aryl hydrocarbon receptor nuclear	84	Basic motif.				circadian rhythm|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	aryl hydrocarbon receptor binding|DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0				Epithelial(150;0.0243)		GAAAAGCGGCGTCGGGATAAA	0.353													57	135					0	0	1	0	0	
RRAS2	22800	broad.mit.edu	37	11	14300968	14300968	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:14300968T>G	uc001mlf.3	-	6	843	c.530A>C	c.(529-531)AAA>ACA	p.K177T	RRAS2_uc009ygq.2_Missense_Mutation_p.K100T|RRAS2_uc010rco.1_Missense_Mutation_p.K183T	NM_012250	NP_036382	P62070	RRAS2_HUMAN	related RAS viral (r-ras) oncogene homolog 2	177						endoplasmic reticulum|plasma membrane	GTP binding|GTPase activity|protein binding			breast(1)	1				Epithelial(150;0.203)		CTCTTGAAATTTCCTGTAAGA	0.333													33	68					0	0	1	0	0	
COPB1	1315	broad.mit.edu	37	11	14490365	14490365	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:14490365G>A	uc001mli.2	-	16	2314	c.2007C>T	c.(2005-2007)GAC>GAT	p.D669D	COPB1_uc001mlg.2_Silent_p.D669D|COPB1_uc001mlh.2_Silent_p.D669D	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	669					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						AGGAAATGGGGTCATCAGGCT	0.383													70	148					0	0	1	0	0	
PDE3B	5140	broad.mit.edu	37	11	14880774	14880774	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:14880774C>T	uc001mln.2	+	13	3059	c.2706C>T	c.(2704-2706)CTC>CTT	p.L902L	PDE3B_uc010rcr.1_Silent_p.L851L	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	902	Catalytic (By similarity).				cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						TTGATTTTCTCGCAGAATTCA	0.308													18	37					0	0	1	0	0	
PDE3B	5140	broad.mit.edu	37	11	14891108	14891108	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:14891108A>C	uc001mln.2	+	16	3594	c.3241A>C	c.(3241-3243)AAA>CAA	p.K1081Q	PDE3B_uc010rcr.1_Missense_Mutation_p.K1030Q	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	1081					cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						GGAAGAAGAAAAATGTAAAGC	0.428													20	81					0	0	1	0	0	
CYP2R1	120227	broad.mit.edu	37	11	14901790	14901790	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:14901790C>A	uc001mlr.2	-	3	892	c.892G>T	c.(892-894)GAA>TAA	p.E298*	CYP2R1_uc001mlo.2_Nonsense_Mutation_p.E65*|CYP2R1_uc001mlp.2_Nonsense_Mutation_p.E181*|CYP2R1_uc001mlq.2_RNA|CYP2R1_uc001mls.1_Nonsense_Mutation_p.E243*	NM_024514	NP_078790	Q6VVX0	CP2R1_HUMAN	cytochrome P450, family 2, subfamily R,	298					hormone biosynthetic process|vitamin D metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding|vitamin D3 25-hydroxylase activity			ovary(1)|central_nervous_system(1)	2					Cholecalciferol(DB00169)|Ergocalciferol(DB00153)	ATTAGGTTTTCTTTGGAGAAA	0.403													23	62					3.5997e-14	4.05566e-14	1	1	0	
CYP2R1	120227	broad.mit.edu	37	11	14907379	14907379	+	Missense_Mutation	SNP	C	T	T	rs61744571		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:14907379C>T	uc001mlr.2	-	2	310	c.310G>A	c.(310-312)GAA>AAA	p.E104K	CYP2R1_uc001mlo.2_Missense_Mutation_p.R7Q|CYP2R1_uc001mlp.2_5'UTR|CYP2R1_uc001mlq.2_RNA|CYP2R1_uc001mls.1_Missense_Mutation_p.E49K	NM_024514	NP_078790	Q6VVX0	CP2R1_HUMAN	cytochrome P450, family 2, subfamily R,	104					hormone biosynthetic process|vitamin D metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding|vitamin D3 25-hydroxylase activity			ovary(1)|central_nervous_system(1)	2					Cholecalciferol(DB00169)|Ergocalciferol(DB00153)	GCAAAAATTTCGCTTTGATGA	0.348													29	56					0	0	1	0	0	
SOX6	55553	broad.mit.edu	37	11	16119153	16119153	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:16119153A>G	uc001mme.2	-	8	1050	c.1017_splice	c.e8+1	p.Q339_splice	SOX6_uc001mmd.2_Splice_Site_p.Q329_splice|SOX6_uc001mmf.2_Splice_Site_p.Q326_splice|SOX6_uc001mmg.2_Splice_Site_p.Q326_splice	NM_001145819	NP_001139291	P35712	SOX6_HUMAN	SRY (sex determining region Y)-box 6 isoform 4						muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3						TCTGGCACTTACCTGGAGCTG	0.428													13	29					0	0	1	0	0	
SOX6	55553	broad.mit.edu	37	11	16208354	16208354	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:16208354T>C	uc001mme.2	-	5	755	c.722A>G	c.(721-723)GAC>GGC	p.D241G	SOX6_uc001mmd.2_Missense_Mutation_p.D231G|SOX6_uc001mmf.2_Missense_Mutation_p.D228G|SOX6_uc001mmg.2_Missense_Mutation_p.D228G	NM_001145819	NP_001139291	P35712	SOX6_HUMAN	SRY (sex determining region Y)-box 6 isoform 4	228	Potential.|Gln-rich.				muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3						GCGAGCAAGGTCCATTTGCTG	0.493													46	125					0	0	1	0	0	
PLEKHA7	144100	broad.mit.edu	37	11	16824525	16824525	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:16824525C>A	uc001mmo.2	-	15	2166	c.2151G>T	c.(2149-2151)GAG>GAT	p.E717D	PLEKHA7_uc010rcu.1_Missense_Mutation_p.E717D|PLEKHA7_uc010rcv.1_Missense_Mutation_p.E291D|PLEKHA7_uc001mmn.2_Missense_Mutation_p.E425D	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	717	Potential.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						GTACTTTGTTCTCTTTAAGGG	0.448													39	69					3.76604e-16	4.31307e-16	1	1	0	
PLEKHA7	144100	broad.mit.edu	37	11	16863173	16863173	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:16863173C>T	uc001mmo.2	-	9	808	c.793G>A	c.(793-795)GAC>AAC	p.D265N	PLEKHA7_uc010rcu.1_Missense_Mutation_p.D265N	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	265	PH.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TCCTGGGTGTCGGCACTGAAG	0.587													31	71					0	0	1	0	0	
PLEKHA7	144100	broad.mit.edu	37	11	16892681	16892681	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:16892681A>G	uc001mmo.2	-	4	285	c.270T>C	c.(268-270)TTT>TTC	p.F90F	PLEKHA7_uc010rcu.1_Silent_p.F90F	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	90					epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TTTCTGGAGAAAACTGTCCCG	0.413													15	34					0	0	1	0	0	
PIK3C2A	5286	broad.mit.edu	37	11	17139172	17139172	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:17139172C>T	uc001mmq.3	-	18	3148	c.3082G>A	c.(3082-3084)GAA>AAA	p.E1028K	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Missense_Mutation_p.E648K|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	1028					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	AAAACATGTTCGTATCGGGTA	0.378													34	59					0	0	1	0	0	
PIK3C2A	5286	broad.mit.edu	37	11	17177086	17177086	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:17177086G>A	uc001mmq.3	-	2	1222	c.1156C>T	c.(1156-1158)CGA>TGA	p.R386*	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Nonsense_Mutation_p.R6*|PIK3C2A_uc001mmr.3_RNA|PIK3C2A_uc010rcx.1_Nonsense_Mutation_p.R386*|PIK3C2A_uc009ygv.1_Nonsense_Mutation_p.R386*	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	386					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	GTAATGGATCGACAAAAAGCT	0.303													20	52					0	0	1	0	0	
PIK3C2A	5286	broad.mit.edu	37	11	17190351	17190351	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:17190351G>A	uc001mmq.3	-	1	1004	c.938C>T	c.(937-939)TCG>TTG	p.S313L	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Intron|PIK3C2A_uc001mmr.3_RNA|PIK3C2A_uc010rcx.1_Missense_Mutation_p.S313L|PIK3C2A_uc009ygv.1_Missense_Mutation_p.S313L	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	313					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	ATTTGCTGTCGATCTCTCTTC	0.393													28	109					0	0	1	0	0	
TPH1	7166	broad.mit.edu	37	11	18042653	18042653	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:18042653C>T	uc001mnp.2	-	10	1246	c.1220G>A	c.(1219-1221)AGT>AAT	p.S407N	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	407					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	GATCTGAATACTCCGTGTATA	0.403													63	60					0	0	1	0	0	
TPH1	7166	broad.mit.edu	37	11	18057677	18057677	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:18057677T>C	uc001mnp.2	-	2	156	c.130A>G	c.(130-132)AAT>GAT	p.N44D	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	44	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	TGTAACAGATTCACATGCTTC	0.338													10	34					0	0	1	0	0	
MRGPRX3	117195	broad.mit.edu	37	11	18159568	18159568	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:18159568C>A	uc001mnu.2	+	3	1180	c.819C>A	c.(817-819)TTC>TTA	p.F273L		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	273	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TCATTTACTTCTTCGTGGGCT	0.507													31	63					5.60225e-13	6.24063e-13	1	1	0	
SAA2	6289	broad.mit.edu	37	11	18267004	18267004	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:18267004C>T	uc001mnz.3	-	4	326	c.289G>A	c.(289-291)GAT>AAT	p.D97N	SAA2_uc009yhj.2_Intron	NM_030754	NP_110381	P02735	SAA_HUMAN	serum amyloid A2 isoform a	97				ADQAAN -> SEATVK (in Ref. 11; AA sequence).	acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	GCAGCCTGATCGGCCAGCGAG	0.557													26	48					0	0	1	0	0	
HPS5	11234	broad.mit.edu	37	11	18309169	18309169	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:18309169G>A	uc001mod.1	-	18	2908	c.2630C>T	c.(2629-2631)TCG>TTG	p.S877L	HPS5_uc001moe.1_Missense_Mutation_p.S763L|HPS5_uc001mof.1_Missense_Mutation_p.S763L	NM_181507	NP_852608	Q9UPZ3	HPS5_HUMAN	Hermansky-Pudlak syndrome 5 isoform a	877						cytosol				ovary(1)|pancreas(1)|skin(1)	3						TATGATATCCGATGGCAAAAT	0.403									Hermansky-Pudlak_syndrome				24	60					0	0	1	0	0	
LDHA	3939	broad.mit.edu	37	11	18421014	18421014	+	Missense_Mutation	SNP	G	A	A	rs144856598		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:18421014G>A	uc001mok.3	+	3	435	c.163G>A	c.(163-165)GAA>AAA	p.E55K	LDHA_uc010rdc.1_Missense_Mutation_p.E55K|LDHA_uc009yhn.2_Missense_Mutation_p.E55K|LDHA_uc009yho.2_Intron|LDHA_uc001mol.3_Missense_Mutation_p.E55K|LDHA_uc010rdd.1_Missense_Mutation_p.E84K	NM_005566	NP_005557	P00338	LDHA_HUMAN	lactate dehydrogenase A isoform 1	55	NAD.				glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity|protein binding			central_nervous_system(3)	3					NADH(DB00157)	TGATGTCATCGAAGACAAATT	0.378													41	79					0	0	1	0	0	
TSG101	7251	broad.mit.edu	37	11	18536371	18536371	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:18536371G>A	uc001mor.2	-	4	337	c.211C>T	c.(211-213)CCA>TCA	p.P71S	TSG101_uc001mos.1_Missense_Mutation_p.P19S|TSG101_uc009yhs.1_Intron	NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	71	UEV.				cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						AGGCATATTGGAATATTGTAT	0.313													50	142					0	0	1	0	0	
TMEM86A	144110	broad.mit.edu	37	11	18723139	18723139	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:18723139G>A	uc001moz.1	+	3	389	c.306G>A	c.(304-306)GTG>GTA	p.V102V		NM_153347	NP_699178	Q8N2M4	TM86A_HUMAN	transmembrane protein 86A	102	Helical; (Potential).					integral to membrane				ovary(1)	1						TGTTTGCTGTGACCCACATGT	0.587													37	81					0	0	1	0	0	
SLC6A5	9152	broad.mit.edu	37	11	20668389	20668389	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:20668389G>T	uc001mqd.2	+	14	2252	c.1979G>T	c.(1978-1980)AGA>ATA	p.R660I	SLC6A5_uc009yic.2_Missense_Mutation_p.R425I	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	660					synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	GGCTTGCAAAGATTCTGTGAA	0.473													7	40					2.7689e-08	2.93819e-08	1	1	0	
SLC6A5	9152	broad.mit.edu	37	11	20673936	20673936	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:20673936T>C	uc001mqd.2	+	15	2445	c.2172T>C	c.(2170-2172)TGT>TGC	p.C724C	SLC6A5_uc009yic.2_Silent_p.C489C	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	724	Helical; Name=12; (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	TGCTCGCCTGTTCCGTCATCT	0.463													49	97					0	0	1	0	0	
NELL1	4745	broad.mit.edu	37	11	21135211	21135211	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:21135211C>T	uc001mqe.2	+	13	1530	c.1377C>T	c.(1375-1377)CGC>CGT	p.R459R	NELL1_uc001mqf.2_Silent_p.R459R|NELL1_uc009yid.2_Silent_p.R487R|NELL1_uc010rdo.1_Silent_p.R402R|NELL1_uc010rdp.1_Silent_p.R219R	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	459	EGF-like 2; calcium-binding (Potential).				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						GGTTATATCGCTGTGACTGTG	0.403													46	68					0	0	1	0	0	
NELL1	4745	broad.mit.edu	37	11	21135236	21135236	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:21135236C>T	uc001mqe.2	+	13	1555	c.1402C>T	c.(1402-1404)CGT>TGT	p.R468C	NELL1_uc001mqf.2_Missense_Mutation_p.R468C|NELL1_uc009yid.2_Missense_Mutation_p.R496C|NELL1_uc010rdo.1_Missense_Mutation_p.R411C|NELL1_uc010rdp.1_Missense_Mutation_p.R228C	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	468	EGF-like 2; calcium-binding (Potential).				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						AGGATACATTCGTGTGGATGA	0.403													49	67					0	0	1	0	0	
ANO5	203859	broad.mit.edu	37	11	22291982	22291982	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:22291982G>T	uc001mqi.2	+	18	2340	c.2023G>T	c.(2023-2025)GAA>TAA	p.E675*	ANO5_uc001mqj.2_Nonsense_Mutation_p.E674*	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	675	Extracellular (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TGAGTACTTAGAAACAGGTAA	0.373													43	106					2.47872e-24	2.97694e-24	1	1	0	
SLC17A6	57084	broad.mit.edu	37	11	22396342	22396342	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:22396342T>G	uc001mqk.2	+	9	1496	c.1083T>G	c.(1081-1083)ATT>ATG	p.I361M		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	361	Helical; (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						TAATGACAATTATTGTGCCTA	0.368													79	153					0	0	1	0	0	
SLC5A12	159963	broad.mit.edu	37	11	26700347	26700347	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:26700347A>G	uc001mra.2	-	13	1804	c.1491T>C	c.(1489-1491)GAT>GAC	p.D497D	SLC5A12_uc001mrb.2_RNA	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	497	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						AGTACCAGGTATCAGCTATTC	0.458													27	53					0	0	1	0	0	
FIBIN	387758	broad.mit.edu	37	11	27016106	27016106	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:27016106C>T	uc001mrd.2	+	1	479	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	11						extracellular region|Golgi apparatus					0						GCATGAGTTTCTTCTGCCACC	0.532													17	66					0	0	1	0	0	
BDNF	627	broad.mit.edu	37	11	27679427	27679427	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:27679427G>A	uc010rdu.1	-	2	1536	c.685C>T	c.(685-687)CGA>TGA	p.R229*	BDNFOS_uc001mrm.2_Intron|BDNFOS_uc009yij.2_Intron|BDNFOS_uc009yik.2_Intron|BDNFOS_uc009yil.2_Intron|BDNFOS_uc001mrp.2_Intron|BDNFOS_uc009yim.2_Intron|BDNFOS_uc009yin.2_Intron|BDNFOS_uc009yio.2_Intron|BDNFOS_uc009yip.2_Intron|BDNFOS_uc001mrn.2_Intron|BDNFOS_uc009yiq.2_Intron|BDNFOS_uc001mro.2_Intron|BDNFOS_uc009yir.2_Intron|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_Intron|BDNFOS_uc009yiu.2_Intron|BDNFOS_uc009yiv.2_Intron|BDNFOS_uc009yiw.2_Intron|BDNFOS_uc009yix.2_Intron|BDNFOS_uc009yiy.2_Intron|BDNFOS_uc009yiz.2_Intron|BDNFOS_uc001mrq.3_Intron|BDNFOS_uc001mrr.3_Intron|BDNFOS_uc009yja.2_Intron|BDNFOS_uc009yjb.2_Intron|BDNF_uc010rdv.1_Nonsense_Mutation_p.R229*|BDNF_uc001mrt.2_Nonsense_Mutation_p.R244*|BDNF_uc010rdw.1_Nonsense_Mutation_p.R229*|BDNF_uc009yjd.2_Nonsense_Mutation_p.R229*|BDNF_uc001mru.2_Nonsense_Mutation_p.R229*|BDNF_uc010rdx.1_Nonsense_Mutation_p.R229*|BDNF_uc010rdy.1_Nonsense_Mutation_p.R229*|BDNF_uc009yjg.2_Nonsense_Mutation_p.R229*|BDNF_uc009yje.2_Nonsense_Mutation_p.R311*|BDNF_uc009yjf.2_Nonsense_Mutation_p.R258*|BDNF_uc001mrv.2_Nonsense_Mutation_p.R229*|BDNF_uc001mrw.3_Nonsense_Mutation_p.R229*|BDNF_uc001mrx.2_Nonsense_Mutation_p.R229*|BDNF_uc001mry.3_Nonsense_Mutation_p.R229*|BDNF_uc001mrz.3_Nonsense_Mutation_p.R229*|BDNF_uc001msa.2_Nonsense_Mutation_p.R237*	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	229						extracellular region	growth factor activity				0						CTTATGAATCGCCAGCCAATT	0.423													47	110					0	0	1	0	0	
KCNA4	3739	broad.mit.edu	37	11	30032364	30032364	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:30032364G>T	uc001msk.2	-	2	3014	c.1862C>A	c.(1861-1863)TCT>TAT	p.S621Y		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	621						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGCACACAGAGATTCCTTAAC	0.453													33	78					1.62565e-12	1.80183e-12	1	1	0	
MPPED2	744	broad.mit.edu	37	11	30439133	30439133	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:30439133G>T	uc001msr.2	-	4	704	c.584C>A	c.(583-585)TCT>TAT	p.S195Y	MPPED2_uc001msq.3_Missense_Mutation_p.S195Y|MPPED2_uc009yji.2_Missense_Mutation_p.S69Y	NM_001584	NP_001575	Q15777	MPPD2_HUMAN	metallophosphoesterase domain containing 2	195					nervous system development		hydrolase activity|metal ion binding			skin(1)	1						GTCCAGCAGAGACTGACCTCT	0.527													12	41					2.27111e-07	2.38128e-07	1	1	0	
ELP4	26610	broad.mit.edu	37	11	31625328	31625328	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:31625328C>A	uc001mtb.2	+	5	562	c.527C>A	c.(526-528)TCA>TAA	p.S176*	ELP4_uc001mta.1_RNA|ELP4_uc001mtc.2_Nonsense_Mutation_p.S176*|ELP4_uc010rdz.1_Nonsense_Mutation_p.S177*	NM_019040	NP_061913	Q96EB1	ELP4_HUMAN	elongation protein 4 homolog	176					histone acetylation|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|Elongator holoenzyme complex|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|prostate(1)	3	Lung SC(675;0.225)					GGACCAGTATCATCTTCAAGA	0.323													42	84					1.15505e-17	1.34158e-17	1	1	0	
ELP4	26610	broad.mit.edu	37	11	31648659	31648659	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:31648659C>T	uc001mtb.2	+	6	691	c.656C>T	c.(655-657)TCT>TTT	p.S219F	ELP4_uc001mta.1_RNA|ELP4_uc001mtc.2_Missense_Mutation_p.S219F|ELP4_uc010rdz.1_Missense_Mutation_p.S220F	NM_019040	NP_061913	Q96EB1	ELP4_HUMAN	elongation protein 4 homolog	219					histone acetylation|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|Elongator holoenzyme complex|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|prostate(1)	3	Lung SC(675;0.225)					ACCAACAGTTCTTTGACCCCT	0.328													20	55					0	0	1	0	0	
WT1	7490	broad.mit.edu	37	11	32439194	32439194	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:32439194A>C	uc001mtn.1	-	4	1075	c.879T>G	c.(877-879)AAT>AAG	p.N293K	WT1_uc001mtl.1_Missense_Mutation_p.N81K|WT1_uc001mtm.1_Missense_Mutation_p.N81K|WT1_uc001mto.1_Missense_Mutation_p.N293K|WT1_uc001mtp.1_Missense_Mutation_p.N293K|WT1_uc001mtq.1_Missense_Mutation_p.N293K|WT1_uc009yjs.1_RNA	NM_024426	NP_077744	P19544	WT1_HUMAN	Wilms tumor 1 isoform D	225					adrenal cortex formation|branching involved in ureteric bud morphogenesis|camera-type eye development|cardiac muscle cell fate commitment|cellular response to cAMP|cellular response to gonadotropin stimulus|germ cell development|glomerular basement membrane development|glomerular visceral epithelial cell differentiation|induction of apoptosis|male genitalia development|male gonad development|mesenchymal to epithelial transition|metanephric epithelium development|metanephric S-shaped body morphogenesis|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of female gonad development|negative regulation of metanephric glomerular mesangial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of translation|positive regulation of male gonad development|positive regulation of transcription, DNA-dependent|posterior mesonephric tubule development|regulation of organ formation|RNA splicing|sex determination|vasculogenesis|visceral serous pericardium development	cytoplasm|nuclear speck|nucleoplasm	C2H2 zinc finger domain binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding		EWSR1/WT1(231)	haematopoietic_and_lymphoid_tissue(318)|soft_tissue(231)|kidney(132)|pleura(2)|lung(2)|upper_aerodigestive_tract(1)|peritoneum(1)	687	Breast(20;0.247)		OV - Ovarian serous cystadenocarcinoma(30;0.128)			TTTGGTATAAATTGTCACTGT	0.353			D|Mis|N|F|S	EWSR1	Wilms|desmoplastic small round cell tumor	Wilms			Denys-Drash_syndrome|Frasier_syndrome|Familial_Wilms_tumor|Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				26	33					0	0	1	0	0	
WT1	7490	broad.mit.edu	37	11	32449551	32449551	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:32449551C>T	uc001mtn.1	-	3	1019	c.823G>A	c.(823-825)GAC>AAC	p.D275N	WT1_uc001mtl.1_Missense_Mutation_p.D63N|WT1_uc001mtm.1_Missense_Mutation_p.D63N|WT1_uc001mto.1_Missense_Mutation_p.D275N|WT1_uc001mtp.1_Missense_Mutation_p.D275N|WT1_uc001mtq.1_Missense_Mutation_p.D275N|WT1_uc009yjs.1_RNA	NM_024426	NP_077744	P19544	WT1_HUMAN	Wilms tumor 1 isoform D	207					adrenal cortex formation|branching involved in ureteric bud morphogenesis|camera-type eye development|cardiac muscle cell fate commitment|cellular response to cAMP|cellular response to gonadotropin stimulus|germ cell development|glomerular basement membrane development|glomerular visceral epithelial cell differentiation|induction of apoptosis|male genitalia development|male gonad development|mesenchymal to epithelial transition|metanephric epithelium development|metanephric S-shaped body morphogenesis|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of female gonad development|negative regulation of metanephric glomerular mesangial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of translation|positive regulation of male gonad development|positive regulation of transcription, DNA-dependent|posterior mesonephric tubule development|regulation of organ formation|RNA splicing|sex determination|vasculogenesis|visceral serous pericardium development	cytoplasm|nuclear speck|nucleoplasm	C2H2 zinc finger domain binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding		EWSR1/WT1(231)	haematopoietic_and_lymphoid_tissue(318)|soft_tissue(231)|kidney(132)|pleura(2)|lung(2)|upper_aerodigestive_tract(1)|peritoneum(1)	687	Breast(20;0.247)		OV - Ovarian serous cystadenocarcinoma(30;0.128)			GTGCAGCTGTCGGTGGGGGTG	0.677			D|Mis|N|F|S	EWSR1	Wilms|desmoplastic small round cell tumor	Wilms			Denys-Drash_syndrome|Frasier_syndrome|Familial_Wilms_tumor|Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				8	16					0	0	1	0	0	
CCDC73	493860	broad.mit.edu	37	11	32635173	32635173	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:32635173T>G	uc001mtv.2	-	16	2735	c.2691A>C	c.(2689-2691)AAA>AAC	p.K897N		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	897										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					ATACTGGAGTTTTCTCAGTTT	0.388													61	122					0	0	1	0	0	
CCDC73	493860	broad.mit.edu	37	11	32636375	32636375	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:32636375T>G	uc001mtv.2	-	16	1533	c.1489A>C	c.(1489-1491)ATT>CTT	p.I497L		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	497										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					CCTTGACTAATTACTTCTTTA	0.333													22	57					0	0	1	0	0	
CCDC73	493860	broad.mit.edu	37	11	32657256	32657256	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:32657256C>G	uc001mtv.2	-	14	1215	c.1171G>C	c.(1171-1173)GAC>CAC	p.D391H	CCDC73_uc001mtw.1_Missense_Mutation_p.D381H	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	391										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					AACTTTTTGTCTTCCTCAAAT	0.249													10	20					0	0	1	0	0	
CCDC73	493860	broad.mit.edu	37	11	32676471	32676471	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:32676471A>G	uc001mtv.2	-	10	737	c.693T>C	c.(691-693)TGT>TGC	p.C231C	CCDC73_uc001mtw.1_Silent_p.C231C	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	231										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TCTTATATTGACATGTGACTT	0.279													16	23					0	0	1	0	0	
QSER1	79832	broad.mit.edu	37	11	32954327	32954327	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:32954327C>A	uc001mty.2	+	4	1403	c.1136C>A	c.(1135-1137)TCT>TAT	p.S379Y	QSER1_uc001mtz.1_Intron|QSER1_uc001mua.2_5'Flank	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	379	Ser-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					TTGACTTTTTCTGGGTCATCT	0.378													46	97					2.51966e-14	2.84312e-14	1	1	0	
QSER1	79832	broad.mit.edu	37	11	32976960	32976960	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:32976960T>C	uc001mty.2	+	6	4497	c.4230_splice	c.e6+2	p.S1410_splice	QSER1_uc001mtz.1_Splice_Site_p.S1171_splice|QSER1_uc001mua.2_Splice_Site_p.S915_splice	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1											ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					ACAAATAGTGTAAGTAAAATG	0.284													10	31					0	0	1	0	0	
TCP11L1	55346	broad.mit.edu	37	11	33094125	33094125	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:33094125A>G	uc001mud.2	+	10	1833	c.1433A>G	c.(1432-1434)GAA>GGA	p.E478G	TCP11L1_uc009yju.2_Missense_Mutation_p.E293G|TCP11L1_uc010rei.1_Missense_Mutation_p.E478G|TCP11L1_uc001mue.2_Missense_Mutation_p.E478G|TCP11L1_uc001muf.1_RNA	NM_018393	NP_060863	Q9NUJ3	T11L1_HUMAN	t-complex 11 (mouse) like 1	478											0						GAGCTGGAGGAAGTTGCTATT	0.498													45	120					0	0	1	0	0	
HIPK3	10114	broad.mit.edu	37	11	33308184	33308184	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:33308184A>G	uc001mul.1	+	2	494	c.224A>G	c.(223-225)AAC>AGC	p.N75S	HIPK3_uc001mum.1_Missense_Mutation_p.N75S|HIPK3_uc009yjv.1_Missense_Mutation_p.N75S	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	75					anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						CGAGGACACAACTTTTCATTG	0.453													39	83					0	0	1	0	0	
HIPK3	10114	broad.mit.edu	37	11	33308552	33308552	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:33308552G>A	uc001mul.1	+	2	862	c.592G>A	c.(592-594)GAA>AAA	p.E198K	HIPK3_uc001mum.1_Missense_Mutation_p.E198K|HIPK3_uc009yjv.1_Missense_Mutation_p.E198K	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	198	Protein kinase.				anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						AAATACTTACGAAGTCCTTGA	0.393													31	45					0	0	1	0	0	
HIPK3	10114	broad.mit.edu	37	11	33375100	33375100	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:33375100T>C	uc001mul.1	+	17	3904	c.3634T>C	c.(3634-3636)TAT>CAT	p.Y1212H	HIPK3_uc001mum.1_Missense_Mutation_p.Y1191H|HIPK3_uc009yjv.1_Missense_Mutation_p.Y1191H	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	1212					anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						ACTCAGCCAGTATCCATATAT	0.358													6	84					0	0	1	0	0	
CAPRIN1	4076	broad.mit.edu	37	11	34098105	34098105	+	Splice_Site	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:34098105A>C	uc001mvh.1	+	6	795	c.606_splice	c.e6-2	p.R202_splice	CAPRIN1_uc001mvg.2_Splice_Site_p.R202_splice|CAPRIN1_uc001mvi.2_Splice_Site_p.R202_splice|CAPRIN1_uc001mvj.1_Splice_Site_p.R121_splice	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker						negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				TACTATTAAAAGGTTGAATGA	0.388													42	80					0	0	1	0	0	
NAT10	55226	broad.mit.edu	37	11	34163346	34163346	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:34163346G>A	uc001mvk.2	+	26	3037	c.2793G>A	c.(2791-2793)AAG>AAA	p.K931K	NAT10_uc010ren.1_Silent_p.K859K	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	931	Required for localization to the nucleolus and midbody.					nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				CCACGATGAAGACCCTCAGTG	0.507													16	37					0	0	1	0	0	
ABTB2	25841	broad.mit.edu	37	11	34184328	34184328	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:34184328C>T	uc001mvl.1	-	10	1685	c.1455G>A	c.(1453-1455)ACG>ACA	p.T485T		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	485							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				GCTGTGGCTGCGTCAGGAGCT	0.642													10	24					0	0	1	0	0	
EHF	26298	broad.mit.edu	37	11	34670605	34670605	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:34670605T>C	uc001mvr.1	+	4	494	c.383T>C	c.(382-384)GTC>GCC	p.V128A	EHF_uc009yke.1_Missense_Mutation_p.V128A|EHF_uc009ykf.1_Missense_Mutation_p.V131A	NM_012153	NP_036285	Q9NZC4	EHF_HUMAN	ets homologous factor	128					cell proliferation|epithelial cell differentiation|multicellular organismal development|positive regulation of transcription, DNA-dependent		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(20;0.117)	Epithelial(1;0.055)|all cancers(1;0.137)|STAD - Stomach adenocarcinoma(6;0.235)			ACACACAATGTCATTGTCAAG	0.532													60	123					0	0	1	0	0	
EHF	26298	broad.mit.edu	37	11	34680177	34680177	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:34680177C>T	uc001mvr.1	+	8	816	c.705C>T	c.(703-705)GGC>GGT	p.G235G	EHF_uc009yke.1_Silent_p.G212G|EHF_uc009ykf.1_Silent_p.G238G	NM_012153	NP_036285	Q9NZC4	EHF_HUMAN	ets homologous factor	235	ETS.				cell proliferation|epithelial cell differentiation|multicellular organismal development|positive regulation of transcription, DNA-dependent		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(20;0.117)	Epithelial(1;0.055)|all cancers(1;0.137)|STAD - Stomach adenocarcinoma(6;0.235)			GATCTGAGGGCGTCTTCAGGT	0.488													43	74					0	0	1	0	0	
FJX1	24147	broad.mit.edu	37	11	35641111	35641111	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:35641111C>A	uc001mwh.2	+	1	1377	c.927C>A	c.(925-927)CTC>CTA	p.L309L		NM_014344	NP_055159	Q86VR8	FJX1_HUMAN	four jointed box 1 precursor	309						extracellular space					0	all_cancers(35;0.177)|all_lung(20;0.0238)|Lung NSC(22;0.0494)|all_epithelial(35;0.0739)	all_hematologic(20;0.107)				TAAGCAACCTCTTCAGCCTGC	0.627													10	28					5.16669e-11	5.64189e-11	1	1	0	
FJX1	24147	broad.mit.edu	37	11	35641181	35641181	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:35641181G>A	uc001mwh.2	+	1	1447	c.997G>A	c.(997-999)GCG>ACG	p.A333T		NM_014344	NP_055159	Q86VR8	FJX1_HUMAN	four jointed box 1 precursor	333						extracellular space					0	all_cancers(35;0.177)|all_lung(20;0.0238)|Lung NSC(22;0.0494)|all_epithelial(35;0.0739)	all_hematologic(20;0.107)				TCCGGGCGGGGCGCTGGTCTT	0.642													12	25					0	0	1	0	0	
PRR5L	79899	broad.mit.edu	37	11	36467895	36467895	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:36467895G>T	uc001mwo.3	+	7	879	c.490G>T	c.(490-492)GAC>TAC	p.D164Y	PRR5L_uc001mwp.2_Missense_Mutation_p.D164Y|PRR5L_uc009ykk.2_Intron|PRR5L_uc010rfc.1_Missense_Mutation_p.D164Y	NM_001160167	NP_001153639	Q6MZQ0	PRR5L_HUMAN	protor-2 isoform a	164										ovary(1)	1						GGGCTTCCGAGACCTAGTCTT	0.602													27	41					1.08312e-15	1.23716e-15	1	1	0	
Unknown	0	broad.mit.edu	37	11	43284436	43284436	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:43284436T>G	uc001mxe.1	-	2		c.500A>C								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		AAGGATAATTTTATGCACTCT	0.378													10	16					0	0	1	0	0	
ACCSL	390110	broad.mit.edu	37	11	44070029	44070029	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:44070029C>T	uc001mxw.1	+	1	499	c.443C>T	c.(442-444)TCG>TTG	p.S148L	ACCSL_uc009ykr.2_5'UTR	NM_001031854	NP_001027025	Q4AC99	1A1L2_HUMAN	1-aminocyclopropane-1-carboxylate synthase	148							1-aminocyclopropane-1-carboxylate synthase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(5)	5						TTTTATCAGTCGAGCTTCCAG	0.502													30	81					0	0	1	0	0	
SYT13	57586	broad.mit.edu	37	11	45267974	45267974	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:45267974C>T	uc001myq.2	-	5	1062	c.936G>A	c.(934-936)AAG>AAA	p.K312K	SYT13_uc009yku.1_Silent_p.K168K	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	312	C2 2.|Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						AGTGGAGGTTCTTGGCTTTAA	0.582													20	44					0	0	1	0	0	
CHST1	8534	broad.mit.edu	37	11	45671749	45671749	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:45671749G>A	uc001mys.1	-	4	1396	c.725C>T	c.(724-726)TCG>TTG	p.S242L		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	242	Lumenal (Potential).|PAPS (By similarity).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		CTCGCTGCGCGAAGCCAGAAT	0.662													37	52					0	0	1	0	0	
KIAA0652	9776	broad.mit.edu	37	11	46665897	46665897	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:46665897T>G	uc009yld.2	+	3	740	c.56T>G	c.(55-57)TTT>TGT	p.F19C	KIAA0652_uc001nda.2_Missense_Mutation_p.F19C|KIAA0652_uc001ndb.2_Missense_Mutation_p.F19C|KIAA0652_uc001ncz.2_Missense_Mutation_p.F19C|KIAA0652_uc001ndc.2_Missense_Mutation_p.F19C|KIAA0652_uc010rgv.1_Intron	NM_001142673	NP_001136145	O75143	ATG13_HUMAN	autophagy-related protein 13 isoform 1	19					autophagic vacuole assembly	cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding				0				GBM - Glioblastoma multiforme(35;0.226)		TTTATTAAATTTTTTGCCCTC	0.363													31	59					0	0	1	0	0	
CKAP5	9793	broad.mit.edu	37	11	46776615	46776615	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:46776615G>A	uc001ndi.1	-	36	4802	c.4692C>T	c.(4690-4692)ATC>ATT	p.I1564I	CKAP5_uc009ylg.1_Silent_p.I1450I|CKAP5_uc001ndj.1_Intron|CKAP5_uc001ndh.1_Silent_p.I493I	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	1564					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						GGACCTCATCGATCTGATAAC	0.363													13	31					0	0	1	0	0	
CKAP5	9793	broad.mit.edu	37	11	46804892	46804892	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:46804892C>A	uc001ndi.1	-	18	2291	c.2181G>T	c.(2179-2181)AAG>AAT	p.K727N	CKAP5_uc009ylg.1_Missense_Mutation_p.K613N|CKAP5_uc001ndj.1_Missense_Mutation_p.K727N	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	727					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						TTTTGGGATTCTTTTGTGAGA	0.353													19	30					1.50039e-11	1.64695e-11	1	1	0	
MADD	8567	broad.mit.edu	37	11	47348331	47348331	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:47348331C>T	uc001ner.1	+	34	4956	c.4765C>T	c.(4765-4767)CGA>TGA	p.R1589*	MADD_uc001neq.2_Nonsense_Mutation_p.R1530*|MADD_uc001nev.1_Intron|MADD_uc001nes.1_Nonsense_Mutation_p.R1507*|MADD_uc001net.1_Nonsense_Mutation_p.R1550*|MADD_uc009yln.1_Nonsense_Mutation_p.R1483*|MADD_uc001neu.1_Nonsense_Mutation_p.R1487*|MADD_uc001nex.2_Intron|MADD_uc001nez.2_Nonsense_Mutation_p.R1486*|MADD_uc001new.2_Nonsense_Mutation_p.R1529*	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1589					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		CAATACAGTTCGAGGCGTCTT	0.517													28	53					0	0	1	0	0	
SPI1	6688	broad.mit.edu	37	11	47397271	47397271	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:47397271C>A	uc001nfc.1	-	2	278	c.55G>T	c.(55-57)GAC>TAC	p.D19Y	SPI1_uc001nfb.1_Missense_Mutation_p.D20Y|SLC39A13_uc001nfd.2_Intron|SPI1_uc009ylp.1_Missense_Mutation_p.D13Y	NM_003120	NP_003111	P17947	SPI1_HUMAN	hematopoietic transcription factor PU.1 isoform	19					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of erythrocyte differentiation	nucleus	protein binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2				Lung(87;0.0967)		GGCACCAGGTCTTCTGATGGC	0.612													11	71					6.40141e-05	6.56571e-05	1	1	0	
OR4C12	283093	broad.mit.edu	37	11	50003388	50003388	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:50003388A>G	uc010ria.1	-	1	650	c.650T>C	c.(649-651)GTG>GCG	p.V217A		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CAAGATGATCACATAGGATAC	0.393													24	78					0	0	1	0	0	
OR4A16	81327	broad.mit.edu	37	11	55111601	55111601	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55111601A>C	uc010rie.1	+	1	925	c.925A>C	c.(925-927)AAA>CAA	p.K309Q		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						TATAGTTAGAAAAAGAGTATC	0.343													11	23					0	0	1	0	0	
OR4C15	81309	broad.mit.edu	37	11	55321977	55321977	+	Silent	SNP	C	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55321977C>G	uc010rig.1	+	1	195	c.195C>G	c.(193-195)GTC>GTG	p.V65V		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTGAGTTTGTCCTCCTGGGAC	0.383										HNSCC(20;0.049)			44	119					0	0	1	0	0	
OR4S2	219431	broad.mit.edu	37	11	55418468	55418468	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55418468C>A	uc001nhs.1	+	1	89	c.89C>A	c.(88-90)TCT>TAT	p.S30Y		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				GTGGTGTTTTCTTTCTTCTAC	0.388													39	80					2.52637e-11	2.7687e-11	1	1	0	
OR4C6	219432	broad.mit.edu	37	11	55433046	55433046	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55433046G>A	uc001nht.3	+	3	669	c.404G>A	c.(403-405)AGT>AAT	p.S135N	OR4C6_uc010rik.1_Missense_Mutation_p.S135N	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						ATCATCATGAGTCCACGGGTG	0.517													33	97					0	0	1	0	0	
OR5D13	390142	broad.mit.edu	37	11	55541018	55541018	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55541018C>T	uc010ril.1	+	1	105	c.105C>T	c.(103-105)TTC>TTT	p.F35F		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TTTTCTTGTTCGTCTACACAG	0.398													49	115					0	0	1	0	0	
OR5D13	390142	broad.mit.edu	37	11	55541337	55541337	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55541337C>T	uc010ril.1	+	1	424	c.424C>T	c.(424-426)CTC>TTC	p.L142F		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				GTCTCAGAAGCTCTGTGCTCT	0.428													71	173					0	0	1	0	0	
OR5D14	219436	broad.mit.edu	37	11	55563579	55563579	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55563579A>G	uc010rim.1	+	1	548	c.548A>G	c.(547-549)TAT>TGT	p.Y183C		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TTTTGTGAGTATACTGCTCTC	0.458													68	178					0	0	1	0	0	
OR5L1	219437	broad.mit.edu	37	11	55579859	55579859	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55579859G>A	uc001nhw.1	+	1	917	c.917G>A	c.(916-918)GGC>GAC	p.G306D		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				AAAGTGATGGGCTCCAAAATT	0.473													14	28					0	0	1	0	0	
OR5L2	26338	broad.mit.edu	37	11	55595592	55595592	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55595592G>A	uc001nhy.1	+	1	898	c.898G>A	c.(898-900)GCT>ACT	p.A300T		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TGTGAACAAAGCTCTCAGAAA	0.463										HNSCC(27;0.073)			16	41					0	0	1	0	0	
OR5D16	390144	broad.mit.edu	37	11	55606387	55606387	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55606387A>C	uc010rio.1	+	1	160	c.160A>C	c.(160-162)AAC>CAC	p.N54H		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				CATCAAAATTAACCCAAAATT	0.433													62	150					0	0	1	0	0	
OR5D16	390144	broad.mit.edu	37	11	55606573	55606573	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55606573C>A	uc010rio.1	+	1	346	c.346C>A	c.(346-348)CTA>ATA	p.L116I		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TGAATTAATTCTATTTGCGGT	0.438													66	117					1.84395e-34	2.27221e-34	1	1	0	
SPRYD5	84767	broad.mit.edu	37	11	55658701	55658701	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55658701G>T	uc010rip.1	+	7	1044	c.952G>T	c.(952-954)GAT>TAT	p.D318Y	SPRYD5_uc010riq.1_Missense_Mutation_p.D175Y	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	318	B30.2/SPRY.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				CCCTCAAGATGATCCCGATAT	0.428													47	101					2.01807e-28	2.45391e-28	1	1	0	
OR5W2	390148	broad.mit.edu	37	11	55681666	55681666	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55681666G>A	uc010rir.1	-	1	393	c.393C>T	c.(391-393)CTC>CTT	p.L131L		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGACTGTATAGAGCAGGGGGT	0.463													30	61					0	0	1	0	0	
OR10AG1	282770	broad.mit.edu	37	11	55735572	55735572	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55735572T>C	uc010rit.1	-	1	368	c.368A>G	c.(367-369)TAT>TGT	p.Y123C		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					CACTAGAGGATACTGCAAAGG	0.433													31	60					0	0	1	0	0	
OR10AG1	282770	broad.mit.edu	37	11	55735927	55735927	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55735927G>T	uc010rit.1	-	1	13	c.13C>A	c.(13-15)CTT>ATT	p.L5I		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					AACCCCAAAAGAACAAATTCC	0.313													22	44					2.21704e-12	2.45332e-12	1	1	0	
OR7E5P	219445	broad.mit.edu	37	11	55747284	55747284	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55747284A>G	uc010riu.1	-	4	728	c.173T>C	c.(172-174)GTC>GCC	p.V58A		NR_027688				SubName: Full=HCG2036849; SubName: Full=Seven transmembrane helix receptor;												0						ATGGTAGATGACTCTGCTATG	0.498													7	13					0	0	1	0	0	
OR5AS1	219447	broad.mit.edu	37	11	55798656	55798656	+	Silent	SNP	G	A	A	rs146891393	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55798656G>A	uc010riw.1	+	1	762	c.762G>A	c.(760-762)GCG>GCA	p.A254A		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TCTATGGAGCGCTCCTGTTTA	0.448													31	77					0	0	1	0	0	
OR8H2	390151	broad.mit.edu	37	11	55873182	55873182	+	Missense_Mutation	SNP	C	A	A	rs150100978		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55873182C>A	uc010riy.1	+	1	664	c.664C>A	c.(664-666)CTC>ATC	p.L222I		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TGTGTTCATTCTCTTTACCAT	0.403										HNSCC(53;0.14)			47	114					1.51926e-22	1.8124e-22	1	1	0	
OR8J3	81168	broad.mit.edu	37	11	55904703	55904703	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55904703G>T	uc010riz.1	-	1	492	c.492C>A	c.(490-492)TTC>TTA	p.F164L		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					AAGACACAGAGAATATACAAG	0.413													27	55					3.28513e-13	3.66545e-13	1	1	0	
OR8K5	219453	broad.mit.edu	37	11	55927518	55927518	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:55927518A>C	uc010rja.1	-	1	276	c.276T>G	c.(274-276)ATT>ATG	p.I92M		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				CATAATAGGAAATAGTATTTC	0.403													47	86					0	0	1	0	0	
OR5T3	390154	broad.mit.edu	37	11	56020510	56020510	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:56020510A>G	uc010rjd.1	+	1	835	c.835A>G	c.(835-837)ACA>GCA	p.T279A		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	279	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					AACTGGAGTGACAATTTATCA	0.398													48	115					0	0	1	0	0	
OR5T1	390155	broad.mit.edu	37	11	56043234	56043234	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:56043234T>G	uc001nio.1	+	1	120	c.120T>G	c.(118-120)TTT>TTG	p.F40L		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					TCTTCCTATTTTTATTATTTT	0.328													27	80					0	0	1	0	0	
OR8K1	390157	broad.mit.edu	37	11	56114034	56114034	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:56114034T>G	uc010rjg.1	+	1	520	c.520T>G	c.(520-522)TTC>GTC	p.F174V		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TAAACTGTCCTTCTGTGGCTC	0.353										HNSCC(65;0.19)			65	109					0	0	1	0	0	
OR5R1	219479	broad.mit.edu	37	11	56185686	56185686	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:56185686T>C	uc010rji.1	-	1	23	c.23A>G	c.(22-24)TAT>TGT	p.Y8C		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TACAGTGACATAAATGATATT	0.408													32	88					0	0	1	0	0	
OR5R1	219479	broad.mit.edu	37	11	56185699	56185699	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:56185699C>A	uc010rji.1	-	1	10	c.10G>T	c.(10-12)GTT>TTT	p.V4F		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ATGATATTAACTTCAGCCATT	0.388													29	85					7.26314e-15	8.22614e-15	1	1	0	
OR5M9	390162	broad.mit.edu	37	11	56230298	56230298	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:56230298C>A	uc010rjj.1	-	1	580	c.580G>T	c.(580-582)GAA>TAA	p.E194*		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ATTGTGATTTCTTTGATGTGC	0.433													10	41					1.58986e-06	1.65575e-06	1	1	0	
OR5M8	219484	broad.mit.edu	37	11	56258583	56258583	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:56258583C>A	uc001nix.1	-	1	264	c.264G>T	c.(262-264)AAG>AAT	p.K88N		NM_001005282	NP_001005282	Q8NGP6	OR5M8_HUMAN	olfactory receptor, family 5, subfamily M,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	Esophageal squamous(21;0.00352)					AAATGCTTTTCTTCTCTGAAA	0.458													43	73					1.48646e-12	1.65046e-12	1	1	0	
OR5M11	219487	broad.mit.edu	37	11	56310494	56310494	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:56310494C>A	uc010rjl.1	-	1	240	c.240G>T	c.(238-240)CAG>CAT	p.Q80H		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	80	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TAGTCGACATCTGCGGGGTTG	0.433													19	66					9.7654e-05	0.000100048	1	1	0	
OR5AR1	219493	broad.mit.edu	37	11	56432021	56432021	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:56432021C>T	uc010rjm.1	+	1	860	c.860C>T	c.(859-861)CCC>CTC	p.P287L		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGTTAAATCCCTTGATCTAC	0.403													11	26					0	0	1	0	0	
APLNR	187	broad.mit.edu	37	11	57003635	57003635	+	Missense_Mutation	SNP	C	T	T	rs143772778		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:57003635C>T	uc001njo.2	-	1	1293	c.844G>A	c.(844-846)GAC>AAC	p.D282N	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	282	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						AGGTCAAAGTCACAGGGCCAG	0.572													12	35					0	0	1	0	0	
SSRP1	6749	broad.mit.edu	37	11	57099296	57099296	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:57099296G>A	uc001njt.2	-	9	1336	c.1069C>T	c.(1069-1071)CGG>TGG	p.R357W		NM_003146	NP_003137	Q08945	SSRP1_HUMAN	structure specific recognition protein 1	357					DNA repair|DNA replication|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|cytoplasm|nucleoplasm	DNA binding|protein binding			ovary(2)	2						ATGAAGCCCCGCTCCAGCGGG	0.562													6	30					0	0	1	0	0	
ZDHHC5	25921	broad.mit.edu	37	11	57456029	57456029	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:57456029A>C	uc001nkx.1	+	4	1532	c.276A>C	c.(274-276)AAA>AAC	p.K92N	ZDHHC5_uc001nky.1_Missense_Mutation_p.K39N|ZDHHC5_uc001nkz.1_5'UTR	NM_015457	NP_056272	Q9C0B5	ZDHC5_HUMAN	zinc finger, DHHC domain containing 5	92						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)	1						CCCTTTACAAAACAGTGGAGA	0.443													28	40					0	0	1	0	0	
CTNND1	1500	broad.mit.edu	37	11	57576003	57576003	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:57576003G>T	uc001nmc.3	+	14	2804	c.2233G>T	c.(2233-2235)GAA>TAA	p.E745*	CTNND1_uc001nlh.1_Nonsense_Mutation_p.E745*|CTNND1_uc001nlu.3_Nonsense_Mutation_p.E638*|CTNND1_uc001nlt.3_Nonsense_Mutation_p.E638*|CTNND1_uc001nls.3_Nonsense_Mutation_p.E638*|CTNND1_uc001nlw.3_Nonsense_Mutation_p.E638*|CTNND1_uc001nmf.3_Nonsense_Mutation_p.E745*|CTNND1_uc001nmd.3_Nonsense_Mutation_p.E691*|CTNND1_uc001nlk.3_Nonsense_Mutation_p.E691*|CTNND1_uc001nme.3_Nonsense_Mutation_p.E739*|CTNND1_uc001nll.3_Nonsense_Mutation_p.E685*|CTNND1_uc001nmg.3_Nonsense_Mutation_p.E685*|CTNND1_uc001nlj.3_Nonsense_Mutation_p.E685*|CTNND1_uc001nlr.3_Nonsense_Mutation_p.E685*|CTNND1_uc001nlp.3_Nonsense_Mutation_p.E685*|CTNND1_uc001nlx.3_Nonsense_Mutation_p.E422*|CTNND1_uc001nlz.3_Nonsense_Mutation_p.E422*|CTNND1_uc009ymn.2_Nonsense_Mutation_p.E416*|CTNND1_uc001nlm.3_Nonsense_Mutation_p.E739*|CTNND1_uc001nly.3_Nonsense_Mutation_p.E416*|CTNND1_uc001nmb.3_Nonsense_Mutation_p.E416*|CTNND1_uc001nma.3_Nonsense_Mutation_p.E416*|CTNND1_uc001nmi.3_Nonsense_Mutation_p.E644*|CTNND1_uc001nmh.3_Nonsense_Mutation_p.E739*|CTNND1_uc001nlq.3_Nonsense_Mutation_p.E644*|CTNND1_uc001nln.3_Nonsense_Mutation_p.E739*|CTNND1_uc001nli.3_Nonsense_Mutation_p.E739*|CTNND1_uc001nlo.3_Nonsense_Mutation_p.E638*|CTNND1_uc001nlv.3_Nonsense_Mutation_p.E638*	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	745	ARM 9.				adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				TCGCAACAAAGAATTAATTGG	0.408													24	45					1.22574e-08	1.30575e-08	1	1	0	
OR9I1	219954	broad.mit.edu	37	11	57886886	57886886	+	Missense_Mutation	SNP	C	T	T	rs145179217		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:57886886C>T	uc001nml.1	-	1	31	c.31G>A	c.(31-33)GAA>AAA	p.E11K	OR9Q1_uc001nmj.2_Intron	NM_001005211	NP_001005211	Q8NGQ6	OR9I1_HUMAN	olfactory receptor, family 9, subfamily I,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Breast(21;0.0589)				AGAATGAATTCGGTTACTCTG	0.428													26	49					0	0	1	0	0	
OR9Q1	219956	broad.mit.edu	37	11	57947716	57947716	+	Missense_Mutation	SNP	C	T	T	rs142831243		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:57947716C>T	uc001nmj.2	+	3	1116	c.800C>T	c.(799-801)TCG>TTG	p.S267L		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				GATCAGTCTTCGGAGAAGAAT	0.512													53	81					0	0	1	0	0	
OR10W1	81341	broad.mit.edu	37	11	58035240	58035240	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58035240T>C	uc001nmq.1	-	1	493	c.91A>G	c.(91-93)ACT>GCT	p.T31A		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				ATGTTCCCAGTGATGATCAAA	0.463													29	60					0	0	1	0	0	
OR5B12	390191	broad.mit.edu	37	11	58207072	58207072	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58207072G>T	uc010rkh.1	-	1	553	c.553C>A	c.(553-555)CTC>ATC	p.L185I		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GAACATGAGAGAGTCAAGAGA	0.403													21	47					4.96729e-08	5.24652e-08	1	1	0	
OR5B12	390191	broad.mit.edu	37	11	58207297	58207297	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58207297T>A	uc010rkh.1	-	1	328	c.328A>T	c.(328-330)AGT>TGT	p.S110C		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AGGAGGAAACTTTCTGCAGTG	0.448													38	64					0	0	1	0	0	
ZFP91	80829	broad.mit.edu	37	11	58377501	58377501	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58377501A>G	uc001nmx.3	+	3	737	c.569A>G	c.(568-570)CAA>CGA	p.Q190R	ZFP91_uc001nmy.3_Missense_Mutation_p.Q190R|ZFP91-CNTF_uc010rkm.1_RNA	NM_053023	NP_444251	Q96JP5	ZFP91_HUMAN	zinc finger protein 91	190					activation of NF-kappaB-inducing kinase activity|protein K63-linked ubiquitination	nucleus	nucleic acid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				AATACAGACCAACTTGATTAT	0.398													5	61					0	0	1	0	0	
GLYAT	10249	broad.mit.edu	37	11	58477342	58477342	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58477342G>A	uc001nnb.2	-	6	943	c.788C>T	c.(787-789)TCT>TTT	p.S263F		NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	263					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	GTCTACATGAGAATAGACAGG	0.483													24	73					0	0	1	0	0	
GLYATL2	219970	broad.mit.edu	37	11	58604789	58604789	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58604789A>G	uc001nnd.3	-	4	399	c.268T>C	c.(268-270)TCA>CCA	p.S90P	GLYATL2_uc009ymq.2_Missense_Mutation_p.S90P	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	90						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	TTGGAGTATGACAGGACTTCC	0.388													51	86					0	0	1	0	0	
FAM111A	63901	broad.mit.edu	37	11	58920482	58920482	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58920482A>C	uc010rkp.1	+	5	1568	c.1341A>C	c.(1339-1341)GAA>GAC	p.E447D	FAM111A_uc010rkq.1_Missense_Mutation_p.E447D|FAM111A_uc010rkr.1_Missense_Mutation_p.E447D|FAM111A_uc001nno.2_Missense_Mutation_p.E447D|FAM111A_uc001nnp.2_Missense_Mutation_p.E447D|FAM111A_uc001nnq.2_Missense_Mutation_p.E447D	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	447					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				AACTGAAGGAAAATGGACAAC	0.363													41	75					0	0	1	0	0	
FAM111A	63901	broad.mit.edu	37	11	58920784	58920784	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58920784C>A	uc010rkp.1	+	5	1870	c.1643C>A	c.(1642-1644)TCA>TAA	p.S548*	FAM111A_uc010rkq.1_Nonsense_Mutation_p.S548*|FAM111A_uc010rkr.1_Nonsense_Mutation_p.S548*|FAM111A_uc001nno.2_Nonsense_Mutation_p.S548*|FAM111A_uc001nnp.2_Nonsense_Mutation_p.S548*|FAM111A_uc001nnq.2_Nonsense_Mutation_p.S548*	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	548					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				GTGTTTGATTCAAAAGGTTCA	0.418													48	132					2.68985e-26	3.25244e-26	1	1	0	
MPEG1	219972	broad.mit.edu	37	11	58979109	58979109	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58979109G>T	uc001nnu.3	-	1	1386	c.1230C>A	c.(1228-1230)TTC>TTA	p.F410L		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	410	Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				AGGGGCAGGAGAAATCACCAG	0.537													8	80					0.000157383	0.000160819	1	1	0	
MPEG1	219972	broad.mit.edu	37	11	58979454	58979454	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:58979454A>G	uc001nnu.3	-	1	1041	c.885T>C	c.(883-885)GGT>GGC	p.G295G		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	295	MACPF.|Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				GGTTGGTGATACCCTGCTGCC	0.582													9	11					0	0	1	0	0	
OR4D11	219986	broad.mit.edu	37	11	59271687	59271687	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:59271687C>T	uc001noa.1	+	1	639	c.639C>T	c.(637-639)TTC>TTT	p.F213F		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGTTTATCTTCCTGCTTGTGT	0.517													64	128					0	0	1	0	0	
OR4D9	390199	broad.mit.edu	37	11	59282741	59282741	+	Missense_Mutation	SNP	C	T	T	rs139740267		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:59282741C>T	uc010rkv.1	+	1	356	c.356C>T	c.(355-357)GCG>GTG	p.A119V		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTGTGATGGCGTTTGACCGC	0.527													46	64					0	0	1	0	0	
OR4D9	390199	broad.mit.edu	37	11	59282896	59282896	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:59282896C>T	uc010rkv.1	+	1	511	c.511C>T	c.(511-513)CCC>TCC	p.P171S		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTTCTGTGGACCCAATGTTCT	0.532													48	114					0	0	1	0	0	
MRPL16	54948	broad.mit.edu	37	11	59575228	59575228	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:59575228T>C	uc001noh.2	-	3	430	c.216A>G	c.(214-216)ATA>ATG	p.I72M		NM_017840	NP_060310	Q9NX20	RM16_HUMAN	mitochondrial ribosomal protein L16 precursor	72							rRNA binding			central_nervous_system(1)	1						AAGGTCCCCGTATGTCACTTA	0.413													111	183					0	0	1	0	0	
GIF	2694	broad.mit.edu	37	11	59603299	59603299	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:59603299C>T	uc001noi.2	-	7	1103	c.1055G>A	c.(1054-1056)CGC>CAC	p.R352H		NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	352					cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						AGGATTTTTGCGCTGTGCTTC	0.408													70	87					0	0	1	0	0	
MS4A7	58475	broad.mit.edu	37	11	60156897	60156897	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:60156897C>A	uc001npe.2	+	5	519	c.374C>A	c.(373-375)TCT>TAT	p.S125Y	MS4A7_uc001npf.2_Missense_Mutation_p.S125Y|MS4A7_uc001npg.2_Missense_Mutation_p.S80Y|MS4A7_uc001nph.2_Missense_Mutation_p.S80Y|MS4A14_uc001npi.2_Intron|MS4A7_uc009ymx.1_Missense_Mutation_p.S80Y	NM_206939	NP_996822	Q9GZW8	MS4A7_HUMAN	membrane-spanning 4-domains, subfamily A, member	125	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|central_nervous_system(1)	2						GCAGTGAGTTCTGTTACTGCA	0.493													9	43					9.70103e-10	1.04594e-09	1	1	0	
MS4A7	58475	broad.mit.edu	37	11	60157046	60157046	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:60157046C>T	uc001npe.2	+	5	668	c.523C>T	c.(523-525)CTC>TTC	p.L175F	MS4A7_uc001npf.2_Missense_Mutation_p.L175F|MS4A7_uc001npg.2_Missense_Mutation_p.L130F|MS4A7_uc001nph.2_Missense_Mutation_p.L130F|MS4A14_uc001npi.2_Intron|MS4A7_uc009ymx.1_Missense_Mutation_p.L130F	NM_206939	NP_996822	Q9GZW8	MS4A7_HUMAN	membrane-spanning 4-domains, subfamily A, member	175	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|central_nervous_system(1)	2						CAAAGATTGTCTCCTGACCAG	0.413													21	60					0	0	1	0	0	
MS4A14	84689	broad.mit.edu	37	11	60164039	60164039	+	Translation_Start_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:60164039C>A	uc001npj.2	+	1	553	c.-12C>A	c.(-14--10)TTCTG>TTATG		MS4A14_uc001npi.2_Intron|MS4A14_uc001npn.2_Translation_Start_Site|MS4A14_uc001npk.2_Translation_Start_Site|MS4A14_uc001npl.2_Translation_Start_Site|MS4A14_uc001npm.2_Translation_Start_Site	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member							integral to membrane	receptor activity			breast(1)	1						TACTAGAGTTCTGCCATAGAA	0.468													20	22					3.51602e-12	3.88498e-12	1	1	0	
MS4A13	503497	broad.mit.edu	37	11	60296873	60296873	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:60296873C>A	uc001nps.2	+	6	665	c.342C>A	c.(340-342)TTC>TTA	p.F114L	MS4A13_uc009ync.2_Missense_Mutation_p.F74L|MS4A13_uc009ynd.2_Missense_Mutation_p.F55L	NM_001012417	NP_001012417	Q5J8X5	M4A13_HUMAN	membrane-spanning 4-domains, subfamily A, member	114	Helical; (Potential).					integral to membrane					0						TTTTACTGTTCTTCTACGGTT	0.358													19	49					1.96292e-10	2.12899e-10	1	1	0	
MS4A13	503497	broad.mit.edu	37	11	60309995	60309995	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:60309995C>T	uc001nps.2	+	7	729	c.406C>T	c.(406-408)CGA>TGA	p.R136*	MS4A13_uc009ync.2_Nonsense_Mutation_p.R96*|MS4A13_uc009ynd.2_Nonsense_Mutation_p.R77*	NM_001012417	NP_001012417	Q5J8X5	M4A13_HUMAN	membrane-spanning 4-domains, subfamily A, member	136						integral to membrane					0						TTTCCAGTTTCGAAGACAAAA	0.318													9	17					0	0	1	0	0	
MS4A10	341116	broad.mit.edu	37	11	60559761	60559761	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:60559761G>A	uc001npz.1	+	4	423	c.327G>A	c.(325-327)GCG>GCA	p.A109A		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	109	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						GGATCTTGGCGATAACAATGA	0.453													36	101					0	0	1	0	0	
PRPF19	27339	broad.mit.edu	37	11	60665619	60665619	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:60665619C>T	uc001nqf.2	-	14	1472	c.1265G>A	c.(1264-1266)CGC>CAC	p.R422H		NM_014502	NP_055317	Q9UMS4	PRP19_HUMAN	PRP19/PSO4 pre-mRNA processing factor 19	422	WD 5.				DNA repair|protein polyubiquitination|spliceosome assembly	catalytic step 2 spliceosome|nuclear speck|spindle|ubiquitin ligase complex	DNA binding|identical protein binding|ubiquitin-ubiquitin ligase activity			ovary(1)	1						CTTAAGCTTGCGCAGATCCCA	0.522													32	55					0	0	1	0	0	
SLC15A3	51296	broad.mit.edu	37	11	60708685	60708685	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:60708685G>C	uc001nqn.2	-	5	1419	c.1185C>G	c.(1183-1185)GAC>GAG	p.D395E	SLC15A3_uc001nqo.2_Intron	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	395					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						GCAGTAAAGGGTCGATCAAGC	0.572													10	13					0	0	1	0	0	
VWCE	220001	broad.mit.edu	37	11	61032439	61032439	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:61032439A>G	uc001nra.2	-	18	2407	c.2128T>C	c.(2128-2130)TGC>CGC	p.C710R	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	710	VWFC 6.					extracellular region	calcium ion binding			ovary(1)	1						TGGCACGTGCACCGGGTGCAG	0.607													28	55					0	0	1	0	0	
CYBASC3	220002	broad.mit.edu	37	11	61118518	61118518	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:61118518A>G	uc001nrf.3	-	4	826	c.650T>C	c.(649-651)ATC>ACC	p.I217T	CYBASC3_uc010rlh.1_Missense_Mutation_p.I234T|CYBASC3_uc001nrg.2_Missense_Mutation_p.I217T|CYBASC3_uc009ynn.2_RNA|CYBASC3_uc001nrh.2_Missense_Mutation_p.I217T|CYBASC3_uc001nri.2_RNA	NM_001161452	NP_001154924	Q8NBI2	CYAC3_HUMAN	cytochrome b, ascorbate dependent 3 isoform 2	217	Cytochrome b561.|Helical; Name=6; (Potential).				electron transport chain|transport	integral to membrane|late endosome membrane|lysosomal membrane	metal ion binding|oxidoreductase activity				0						AGCCAGAAGGATGTAGAGCAC	0.607													13	28					0	0	1	0	0	
C11orf66	220004	broad.mit.edu	37	11	61253289	61253289	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:61253289C>T	uc001nru.1	+	7	718	c.593C>T	c.(592-594)TCG>TTG	p.S198L	C11orf66_uc009ynq.1_Missense_Mutation_p.S198L	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	198										ovary(1)	1						CAGAAGAAATCGATCGGCGCA	0.592													25	63					0	0	1	0	0	
C11orf10	746	broad.mit.edu	37	11	61558069	61558069	+	Silent	SNP	G	A	A	rs141028687		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:61558069G>A	uc001nsf.2	-	2	64	c.9C>T	c.(7-9)CTC>CTT	p.L3L	FEN1_uc001nsg.2_5'Flank	NM_014206	NP_055021	P61165	CK010_HUMAN	hypothetical protein LOC746	3						integral to membrane				breast(1)	1						TCATGGCCTCGAGCTCCTAGA	0.537													11	19					0	0	1	0	0	
FADS3	3995	broad.mit.edu	37	11	61645986	61645986	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:61645986C>T	uc001nsm.2	-	5	898	c.745G>A	c.(745-747)GAG>AAG	p.E249K	FADS3_uc001nsn.2_Missense_Mutation_p.E125K	NM_021727	NP_068373	Q9Y5Q0	FADS3_HUMAN	fatty acid desaturase 3	249	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	heme binding|oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water			ovary(1)|pancreas(1)	2						CCACCCACCTCGACGGATGAC	0.642													24	83					0	0	1	0	0	
INCENP	3619	broad.mit.edu	37	11	61919280	61919280	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:61919280G>A	uc001nsw.1	+	19	2791	c.2589G>A	c.(2587-2589)CCG>CCA	p.P863P	INCENP_uc001nsx.1_Silent_p.P859P|INCENP_uc001nsy.1_Silent_p.P277P	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	863					chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						ACCACCCACCGAACCTTCTGG	0.567													29	72					0	0	1	0	0	
MTA2	9219	broad.mit.edu	37	11	62362466	62362466	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:62362466G>A	uc001ntq.1	-	15	1941	c.1560C>T	c.(1558-1560)ATC>ATT	p.I520I	MTA2_uc010rlx.1_Silent_p.I347I	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	520					chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GATCTTTGACGATAGTTGCCA	0.527													70	153					0	0	1	0	0	
GANAB	23193	broad.mit.edu	37	11	62402472	62402472	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:62402472C>T	uc001nub.2	-	5	414	c.381G>A	c.(379-381)CGG>CGA	p.R127R	GANAB_uc001nua.2_Silent_p.R127R|GANAB_uc001nuc.2_Silent_p.R30R|GANAB_uc010rma.1_Silent_p.R13R|GANAB_uc010rmb.1_Silent_p.R13R	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	127					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						AGACAGAAAGCCTGGGAAACA	0.453													38	47					0	0	1	0	0	
METTL12	751071	broad.mit.edu	37	11	62433962	62433962	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:62433962C>A	uc001nug.1	+	3	421	c.162C>A	c.(160-162)TTC>TTA	p.F54L	C11orf48_uc001nue.2_Intron|C11orf48_uc001nuf.2_Intron|METTL12_uc001nuh.2_Missense_Mutation_p.S96Y|METTL12_uc010rmc.1_RNA	NM_001043229	NP_001036694	A8MUP2	MTL12_HUMAN	methyltransferase like 12 precursor	54						mitochondrion	methyltransferase activity				0						TCGACTGGTTCTTTGGATACG	0.617													34	76					3.86903e-22	4.60818e-22	1	1	0	
HNRNPUL2	221092	broad.mit.edu	37	11	62484514	62484514	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:62484514C>T	uc001nuw.2	-	11	2121	c.1928G>A	c.(1927-1929)CGA>CAA	p.R643Q	HNRNPUL2_uc001nuu.1_RNA	NM_001079559	NP_001073027	Q1KMD3	HNRL2_HUMAN	heterogeneous nuclear ribonucleoprotein U-like	643					cell killing	nucleus	ATP binding|nucleic acid binding				0						TCGGTTGTTTCGGCGATTTGT	0.567													27	49					0	0	1	0	0	
NXF1	10482	broad.mit.edu	37	11	62564692	62564692	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:62564692C>A	uc001nvf.1	-	13	1277	c.1141G>T	c.(1141-1143)GAA>TAA	p.E381*	NXF1_uc001nvg.1_3'UTR|NXF1_uc009yog.1_Nonsense_Mutation_p.E424*	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	381					gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						TTCAAGTTTTCTGTTCCAAAA	0.498													23	38					2.21704e-12	2.45332e-12	1	1	0	
STX5	6811	broad.mit.edu	37	11	62594857	62594857	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:62594857C>A	uc001nvh.2	-	4	464	c.310G>T	c.(310-312)GAC>TAC	p.D104Y	STX5_uc010rmi.1_Missense_Mutation_p.D8Y|STX5_uc009yoh.2_RNA|STX5_uc001nvi.2_Missense_Mutation_p.D50Y|STX5_uc010rmj.1_Missense_Mutation_p.D104Y|STX5_uc001nvj.2_5'UTR	NM_003164	NP_003155	Q13190	STX5_HUMAN	syntaxin 5	104	Cytoplasmic (Potential).				intracellular protein transport|retrograde transport, endosome to Golgi|vesicle targeting	ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|nucleus|SNARE complex	protein N-terminus binding|SNAP receptor activity			ovary(1)|breast(1)	2						TTGCTAAGGTCTTTCCCAATG	0.493													48	135					3.2641e-12	3.60906e-12	1	1	0	
SLC22A9	114571	broad.mit.edu	37	11	63137605	63137605	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:63137605T>G	uc001nww.2	+	1	345	c.77T>G	c.(76-78)ATC>AGC	p.I26S	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	26	Helical; (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						TTTCTCTCAATCTTTGCTGTT	0.483													47	124					0	0	1	0	0	
RARRES3	5920	broad.mit.edu	37	11	63313629	63313629	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:63313629G>A	uc001nxf.3	+	4	464	c.396G>A	c.(394-396)AAG>AAA	p.K132K		NM_004585	NP_004576	Q9UL19	TIG3_HUMAN	retinoic acid receptor responder (tazarotene	132					lipid catabolic process|negative regulation of cell proliferation		hydrolase activity			ovary(1)	1						AGGTGGAAAAGGCCAAGGTTG	0.542													88	141					0	0	1	0	0	
RTN3	10313	broad.mit.edu	37	11	63487738	63487738	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:63487738G>A	uc001nxq.2	+	3	1951	c.1764G>A	c.(1762-1764)ACG>ACA	p.T588T	RTN3_uc001nxo.2_Intron|RTN3_uc001nxm.2_Intron|RTN3_uc001nxn.2_Silent_p.T569T|RTN3_uc001nxp.2_Intron|RTN3_uc009yov.2_Silent_p.T476T|RTN3_uc010rmt.1_Intron|RTN3_uc010rmu.1_Intron	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	588					apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						TACCCGATACGAATGTCTCCT	0.428													46	96					0	0	1	0	0	
MARK2	2011	broad.mit.edu	37	11	63667549	63667549	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:63667549C>T	uc001nxw.2	+	8	1314	c.735C>T	c.(733-735)AGC>AGT	p.S245S	MARK2_uc001nxx.2_Silent_p.S245S|MARK2_uc001nxy.2_Silent_p.S245S|MARK2_uc001nxv.3_Silent_p.S245S|MARK2_uc001nxz.3_Silent_p.S212S|MARK2_uc009yoy.2_Silent_p.S212S	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	245	Protein kinase.				cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						CACTGGTCAGCGGATCCCTGC	0.512													78	136					0	0	1	0	0	
STIP1	10963	broad.mit.edu	37	11	63961954	63961954	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:63961954G>T	uc001nyk.1	+	4	512	c.365G>T	c.(364-366)AGA>ATA	p.R122I	STIP1_uc001nyj.2_Missense_Mutation_p.R122I|STIP1_uc010rnb.1_Missense_Mutation_p.R98I	NM_006819	NP_006810	P31948	STIP1_HUMAN	stress-induced-phosphoprotein 1	122					axon guidance|response to stress	Golgi apparatus|nucleus				ovary(2)|liver(1)	3						TGGACAGAGAGAAAATTCATG	0.443													21	60					1.85244e-09	1.99202e-09	1	1	0	
PLCB3	5331	broad.mit.edu	37	11	64029069	64029069	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:64029069C>T	uc001nzb.2	+	16	1845	c.1845C>T	c.(1843-1845)TTC>TTT	p.F615F	PLCB3_uc009ypg.1_Silent_p.F615F|PLCB3_uc009yph.1_Silent_p.F548F|PLCB3_uc009ypi.2_Silent_p.F615F	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	615	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						ACAAATGCTTCGAGATGTCGT	0.592													35	53					0	0	1	0	0	
NRXN2	9379	broad.mit.edu	37	11	64398002	64398002	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:64398002T>C	uc001oap.2	-	4	1002	c.491A>G	c.(490-492)GAC>GGC	p.D164G	NRXN2_uc001oar.2_Missense_Mutation_p.D1210G|NRXN2_uc001oas.2_Missense_Mutation_p.D1170G|NRXN2_uc001oaq.2_Missense_Mutation_p.D877G	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	164	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GATGGTAATGTCGTCCGTGCC	0.607													23	41					0	0	1	0	0	
SF1	7536	broad.mit.edu	37	11	64536783	64536783	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:64536783C>T	uc001obb.1	-	7	1068	c.691G>A	c.(691-693)GAG>AAG	p.E231K	SF1_uc010rnm.1_5'Flank|SF1_uc010rnn.1_Missense_Mutation_p.E205K|SF1_uc001oaz.1_Missense_Mutation_p.E356K|SF1_uc001oba.1_Missense_Mutation_p.E231K|SF1_uc001obc.1_Missense_Mutation_p.E231K|SF1_uc001obd.1_Missense_Mutation_p.E231K|SF1_uc001obe.1_Missense_Mutation_p.E116K|SF1_uc010rno.1_Missense_Mutation_p.E116K	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	231					nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						TCTGGAGTCTCGATACCCTGC	0.488													39	72					0	0	1	0	0	
ZNHIT2	741	broad.mit.edu	37	11	64883942	64883942	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:64883942C>A	uc001ocw.2	-	1	1229	c.1184G>T	c.(1183-1185)AGA>ATA	p.R395I	uc009yqb.1_5'UTR	NM_014205	NP_055020	Q9UHR6	ZNHI2_HUMAN	zinc finger, HIT domain containing 2	395							metal ion binding			breast(1)	1						AATGAGAGTTCTTGGGGCAGG	0.597													56	86					1.80625e-27	2.19245e-27	1	1	0	
POLA2	23649	broad.mit.edu	37	11	65046230	65046230	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:65046230G>A	uc001odj.2	+	6	833	c.491G>A	c.(490-492)CGA>CAA	p.R164Q	POLA2_uc009yqf.1_Missense_Mutation_p.R164Q|POLA2_uc010rod.1_5'UTR|POLA2_uc001odk.2_5'Flank	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	164					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	TACAACTCACGAAGTAACCGA	0.448													53	127					0	0	1	0	0	
DPF2	5977	broad.mit.edu	37	11	65109022	65109022	+	Nonsense_Mutation	SNP	C	T	T	rs139955640		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:65109022C>T	uc001odm.2	+	4	466	c.454C>T	c.(454-456)CGA>TGA	p.R152*	DPF2_uc001odn.2_Nonsense_Mutation_p.R152*|DPF2_uc010roe.1_Nonsense_Mutation_p.R152*	NM_006268	NP_006259	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	152					apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						GACCAACAGTCGAGCGCGAAA	0.552													15	59					0	0	1	0	0	
MALAT1	378938	broad.mit.edu	37	11	65269454	65269454	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:65269454G>A	uc010roh.1	+	1		c.4222G>A			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						AAAAAGTAAAGAAATATCAAC	0.393													19	23					0	0	1	0	0	
MALAT1	378938	broad.mit.edu	37	11	65273714	65273714	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:65273714C>A	uc010roh.1	+	1		c.8482C>A			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GGTGCTAGTTCTTGGAGTTTT	0.423													17	29					2.48551e-13	2.7759e-13	1	1	0	
EHBP1L1	254102	broad.mit.edu	37	11	65350612	65350612	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:65350612G>T	uc001oeo.3	+	9	2734	c.2469G>T	c.(2467-2469)GAG>GAT	p.E823D	EHBP1L1_uc001oep.1_Intron	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	823	Glu-rich.									central_nervous_system(1)	1						GGACCCAAGAGATAGCATCTA	0.567													19	34					2.94398e-08	3.12196e-08	1	1	0	
MAP3K11	4296	broad.mit.edu	37	11	65380788	65380788	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:65380788C>T	uc001oew.2	-	1	933	c.440G>A	c.(439-441)CGC>CAC	p.R147H	MAP3K11_uc010rol.1_5'Flank|PCNXL3_uc001oey.2_5'Flank	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	147	Protein kinase.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						GGGGTCCTGGCGAGCTGCCTT	0.632													33	48					0	0	1	0	0	
SART1	9092	broad.mit.edu	37	11	65745317	65745317	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:65745317G>A	uc001ogl.2	+	17	2211	c.2119G>A	c.(2119-2121)GAC>AAC	p.D707N		NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	707					cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						CTACAAACCCGACGTTAAGAT	0.602													10	18					0	0	1	0	0	
SF3B2	10992	broad.mit.edu	37	11	65826323	65826323	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:65826323G>A	uc001ogy.1	+	10	1029	c.989G>A	c.(988-990)CGA>CAA	p.R330Q		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	330					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						CGTAGGAACCGAAAGAAGAAG	0.587													18	49					0	0	1	0	0	
SF3B2	10992	broad.mit.edu	37	11	65830545	65830545	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:65830545G>A	uc001ogy.1	+	17	2083	c.2043G>A	c.(2041-2043)CCG>CCA	p.P681P		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	681					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						CTGGGAAACCGCTCTATGGGG	0.478													26	70					0	0	1	0	0	
SLC29A2	3177	broad.mit.edu	37	11	66136541	66136541	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:66136541G>A	uc001oht.2	-	4	634	c.405C>T	c.(403-405)TGC>TGT	p.C135C	SLC29A2_uc001ohs.2_Silent_p.C15C|SLC29A2_uc010rpb.1_RNA|SLC29A2_uc009yrf.2_Silent_p.C15C|SLC29A2_uc001ohu.2_Silent_p.C135C|SLC29A2_uc001ohv.2_Silent_p.C135C|uc001ohw.1_RNA	NM_001532	NP_001523	Q14542	S29A2_HUMAN	solute carrier family 29 (nucleoside	135	Helical; (Potential).				cell proliferation|nucleobase, nucleoside and nucleotide metabolic process	basolateral plasma membrane|integral to plasma membrane|nuclear membrane|nucleolus	nucleoside transmembrane transporter activity			ovary(1)	1						AGTTGATGAAGCAGACGGAGG	0.582													3	6					0	0	1	0	0	
NPAS4	266743	broad.mit.edu	37	11	66192494	66192494	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:66192494A>C	uc001ohx.1	+	7	2309	c.2133A>C	c.(2131-2133)GAA>GAC	p.E711D	NPAS4_uc010rpc.1_Missense_Mutation_p.E501D	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	711					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CGCCCGTGGAAGACATCTTCA	0.602													22	126					0	0	1	0	0	
CTSF	8722	broad.mit.edu	37	11	66334775	66334775	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:66334775C>T	uc001oip.2	-	4	639	c.549G>A	c.(547-549)ATG>ATA	p.M183I		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	183					proteolysis	lysosome	cysteine-type endopeptidase activity				0						AGATTGAAGCCATCTTCACAG	0.512													39	100					0	0	1	0	0	
SPTBN2	6712	broad.mit.edu	37	11	66482842	66482842	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:66482842G>A	uc001ojd.2	-	4	406	c.334C>T	c.(334-336)CGG>TGG	p.R112W		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	112	CH 1.|Actin-binding.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CAGTGGATCCGCATGCGGCCC	0.582													19	24					0	0	1	0	0	
SYT12	91683	broad.mit.edu	37	11	66807670	66807670	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:66807670C>A	uc009yrl.2	+	4	847	c.617C>A	c.(616-618)TCT>TAT	p.S206Y	SYT12_uc001oju.2_Missense_Mutation_p.S206Y	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	206	C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						GTGGGCATTTCTCGGGTAAGT	0.662													21	37					1.96895e-08	2.09068e-08	1	1	0	
CARNS1	57571	broad.mit.edu	37	11	67187257	67187257	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:67187257G>A	uc009yrp.2	+	6	1144	c.692G>A	c.(691-693)CGA>CAA	p.R231Q	PPP1CA_uc001okx.1_Intron|CARNS1_uc010rpr.1_Missense_Mutation_p.R354Q|CARNS1_uc001olc.3_Missense_Mutation_p.R370Q	NM_020811	NP_065862	A5YM72	CRNS1_HUMAN	ATP-grasp domain containing 1	231					carnosine biosynthetic process		ATP binding|carnosine synthase activity|metal ion binding				0						CTGGCCGTGCGAATCTGTGCT	0.657													8	12					0	0	1	0	0	
SUV420H1	51111	broad.mit.edu	37	11	67926444	67926444	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:67926444G>T	uc001onm.1	-	11	1625	c.1369C>A	c.(1369-1371)CAT>AAT	p.H457N	SUV420H1_uc009yse.1_Missense_Mutation_p.H43N|SUV420H1_uc001onn.1_Missense_Mutation_p.H285N|SUV420H1_uc009ysf.2_Missense_Mutation_p.H217N	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	457					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						CGCTTGCAATGATTTCTCAAT	0.363													37	62					1.57351e-24	1.89089e-24	1	1	0	
MTL5	9633	broad.mit.edu	37	11	68478501	68478501	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:68478501G>A	uc001ooc.2	-	9	1315	c.1175C>T	c.(1174-1176)TCT>TTT	p.S392F		NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	392	CXC 2.				cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			GCAAATAGAAGAACACATAAT	0.343													14	38					0	0	1	0	0	
MTL5	9633	broad.mit.edu	37	11	68512569	68512569	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:68512569T>C	uc001ooc.2	-	4	781	c.641A>G	c.(640-642)CAA>CGA	p.Q214R	MTL5_uc001ood.1_Missense_Mutation_p.Q214R|MTL5_uc009ysi.1_Missense_Mutation_p.Q214R	NM_004923	NP_004914	Q9Y4I5	MTL5_HUMAN	metallothionein-like 5, testis-specific isoform	214					cell differentiation|cellular metal ion homeostasis|multicellular organismal development|response to metal ion|spermatogenesis	cytoplasm|nucleus|soluble fraction	metal ion binding			ovary(2)|breast(1)	3	Esophageal squamous(3;4.37e-12)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.185)			CCCTTTCAATTGGCATATCAC	0.303													22	56					0	0	1	0	0	
CPT1A	1374	broad.mit.edu	37	11	68579981	68579981	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:68579981C>T	uc001oog.3	-	3	375	c.205G>A	c.(205-207)GTG>ATG	p.V69M	CPT1A_uc001oof.3_Missense_Mutation_p.V69M|CPT1A_uc009ysj.2_Missense_Mutation_p.V69M	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	69	Helical; (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	GTTGTCATCACGCCCACCACC	0.537													24	61					0	0	1	0	0	
MRPL21	219927	broad.mit.edu	37	11	68663994	68663994	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:68663994G>A	uc001ooi.2	-	4	410	c.385C>T	c.(385-387)CGA>TGA	p.R129*	MRPL21_uc001ooh.2_Nonsense_Mutation_p.R44*|MRPL21_uc010rqe.1_Nonsense_Mutation_p.R129*	NM_181514	NP_852615	Q7Z2W9	RM21_HUMAN	mitochondrial ribosomal protein L21 isoform d	129					translation	mitochondrion|ribosome	RNA binding|structural constituent of ribosome				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TTCTCCAGTCGAATTCTCTCT	0.537													42	107					0	0	1	0	0	
IGHMBP2	3508	broad.mit.edu	37	11	68676003	68676003	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:68676003G>A	uc001ook.1	+	4	553	c.451G>A	c.(451-453)GCC>ACC	p.A151T	IGHMBP2_uc001ooj.1_RNA	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	151					cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CCTTGGCAGAGCCCTGATTGC	0.522													24	38					0	0	1	0	0	
MRGPRD	116512	broad.mit.edu	37	11	68747543	68747543	+	Missense_Mutation	SNP	C	T	T	rs140472736		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:68747543C>T	uc010rqf.1	-	1	913	c.913G>A	c.(913-915)GAG>AAG	p.E305K		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	305	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CCTTCCAGCTCGGGCTCCTCG	0.677													32	74					0	0	1	0	0	
MYEOV	26579	broad.mit.edu	37	11	69063584	69063584	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:69063584G>T	uc001oov.2	+	3	1117	c.667G>T	c.(667-669)GAA>TAA	p.E223*	MYEOV_uc001oox.2_Intron|MYEOV_uc009ysl.2_Nonsense_Mutation_p.E223*|MYEOV_uc001oow.2_Nonsense_Mutation_p.E165*	NM_138768	NP_620123	Q96EZ4	MYEOV_HUMAN	myeloma overexpressed	223											0	all_lung(4;2.21e-19)|Lung NSC(4;6.13e-19)|Melanoma(5;0.00128)		LUSC - Lung squamous cell carcinoma(11;3.33e-11)|STAD - Stomach adenocarcinoma(18;0.00654)|LUAD - Lung adenocarcinoma(13;0.0713)	Kidney(183;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(183;3.23e-08)|Lung(977;0.00361)|LUSC - Lung squamous cell carcinoma(976;0.0153)		GACCCTGGCAGAATCGAGCTG	0.637													32	44					3.99451e-17	4.61668e-17	1	1	0	
ANO1	55107	broad.mit.edu	37	11	69978067	69978067	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:69978067G>A	uc001opj.2	+	11	1445	c.1140G>A	c.(1138-1140)CCG>CCA	p.P380P	ANO1_uc001opk.1_Silent_p.P352P|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.P115P	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	380	Extracellular (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						CCATGTGCCCGCTTTGCGACA	0.602													14	10					0	0	1	0	0	
ANO1	55107	broad.mit.edu	37	11	70031744	70031744	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:70031744C>A	uc001opj.2	+	25	2942	c.2637C>A	c.(2635-2637)ATC>ATA	p.I879I	ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.I588I|ANO1_uc010rql.1_Silent_p.I53I	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	879	Extracellular (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						AGTACGACATCTCCAAGGACT	0.587													25	46					1.75199e-13	1.95935e-13	1	1	0	
ANO1	55107	broad.mit.edu	37	11	70031792	70031792	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:70031792C>T	uc001opj.2	+	25	2990	c.2685C>T	c.(2683-2685)ATC>ATT	p.I895I	ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.I604I|ANO1_uc010rql.1_Silent_p.I69I	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	895	Helical; (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						CGTTTGTCATCGTCTTCCAGG	0.557													20	34					0	0	1	0	0	
PPFIA1	8500	broad.mit.edu	37	11	70221149	70221149	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:70221149G>A	uc001opo.2	+	24	3463	c.3265G>A	c.(3265-3267)GAC>AAC	p.D1089N	PPFIA1_uc001opn.1_Missense_Mutation_p.D1089N|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opr.2_Missense_Mutation_p.D228N|PPFIA1_uc001ops.2_Missense_Mutation_p.D128N|uc001opt.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	1089	SAM 3.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			TGAAACCTTCGACTTCAGTGC	0.488													11	39					0	0	1	0	0	
DHCR7	1717	broad.mit.edu	37	11	71150111	71150111	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:71150111G>T	uc001oqk.2	-	7	895	c.645C>A	c.(643-645)TTC>TTA	p.F215L	DHCR7_uc001oql.2_Missense_Mutation_p.F215L	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	215					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	AGTTGTAAAAGAAATTGCCTG	0.443									Smith-Lemli-Opitz_syndrome				11	30					1.08611e-07	1.14333e-07	1	1	0	
KRTAP5-8	57830	broad.mit.edu	37	11	71249203	71249203	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:71249203C>T	uc001oqr.1	+	1	133	c.102C>T	c.(100-102)TGC>TGT	p.C34C		NM_021046	NP_066384	O75690	KRA58_HUMAN	keratin associated protein 5-8	34	2.|9 X 4 AA repeats of C-C-X-P.					extracellular region|keratin filament	structural constituent of epidermis				0						CCATCTGCTGCTGCAAGCCCG	0.687													74	198					0	0	1	0	0	
NUMA1	4926	broad.mit.edu	37	11	71720125	71720125	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:71720125C>T	uc001orl.1	-	19	5118	c.4946G>A	c.(4945-4947)CGA>CAA	p.R1649Q	NUMA1_uc001orj.2_5'Flank|NUMA1_uc009ysw.1_Missense_Mutation_p.R1198Q|NUMA1_uc001ork.1_Missense_Mutation_p.R513Q|NUMA1_uc001orm.1_Missense_Mutation_p.R1635Q|NUMA1_uc001orn.2_Missense_Mutation_p.R1212Q	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1649	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						AGCTTCAGCTCGCAGCTCTTT	0.577			T	RARA	APL								16	31					0	0	1	0	0	
NUMA1	4926	broad.mit.edu	37	11	71726580	71726580	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:71726580C>T	uc001orl.1	-	15	2141	c.1969G>A	c.(1969-1971)GCC>ACC	p.A657T	NUMA1_uc009ysw.1_Missense_Mutation_p.A220T|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Missense_Mutation_p.A657T|NUMA1_uc001orn.2_Missense_Mutation_p.A220T|NUMA1_uc009ysx.1_Missense_Mutation_p.A657T|NUMA1_uc001oro.1_Missense_Mutation_p.A657T	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	657	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TCAACACAGGCCTGGAGTTCC	0.602			T	RARA	APL								27	57					0	0	1	0	0	
FOLR3	2352	broad.mit.edu	37	11	71847003	71847003	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:71847003A>G	uc001ory.1	+	2	55	c.5A>G	c.(4-6)GAC>GGC	p.D2G	FOLR3_uc001orx.1_Missense_Mutation_p.D2G			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	Error:Variant_position_missing_in_P41439_after_alignment					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	GAATAGATGGACATGGCCTGG	0.602													60	139					0	0	1	0	0	
PDE2A	5138	broad.mit.edu	37	11	72290417	72290417	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:72290417C>T	uc010rrc.1	-	27	2510	c.2267G>A	c.(2266-2268)CGC>CAC	p.R756H	PDE2A_uc001oso.2_Missense_Mutation_p.R735H|PDE2A_uc010rra.1_Missense_Mutation_p.R749H|PDE2A_uc001osn.2_Missense_Mutation_p.R500H|PDE2A_uc010rrb.1_Missense_Mutation_p.R747H|PDE2A_uc010rrd.1_Missense_Mutation_p.R641H	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	756	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	ATCCAGCATGCGCTGATAGTC	0.592													12	31					0	0	1	0	0	
PAAF1	80227	broad.mit.edu	37	11	73602177	73602177	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:73602177T>C	uc001ouk.1	+	4	247	c.213T>C	c.(211-213)TGT>TGC	p.C71C	PAAF1_uc001oul.1_Silent_p.C54C|PAAF1_uc009ytx.1_RNA|PAAF1_uc001oum.1_Silent_p.C54C	NM_025155	NP_079431	Q9BRP4	PAAF1_HUMAN	proteasomal ATPase-associated factor 1	71					interspecies interaction between organisms	proteasome complex	protein binding			ovary(1)|skin(1)	2	Breast(11;7.42e-05)					ATATTTCATGTCCAAAGGAAA	0.289													8	31					0	0	1	0	0	
C2CD3	26005	broad.mit.edu	37	11	73814566	73814566	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:73814566A>T	uc001ouu.2	-	14	2417	c.2190T>A	c.(2188-2190)AAT>AAA	p.N730K		NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	730						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GTAGTGCCTTATTTGGACTTG	0.383													26	72					0	0	1	0	0	
RNF169	254225	broad.mit.edu	37	11	74521240	74521240	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:74521240A>C	uc001ovl.3	+	3	601	c.588A>C	c.(586-588)GAA>GAC	p.E196D	XRRA1_uc001ovm.2_Intron	NM_001098638	NP_001092108	Q8NCN4	RN169_HUMAN	ring finger protein 169	196							zinc ion binding			ovary(1)	1						TGAGAGAAGAAAAGTTACAAG	0.323													21	60					0	0	1	0	0	
XRRA1	143570	broad.mit.edu	37	11	74563045	74563045	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:74563045G>A	uc009yub.2	-	13	1561	c.1229C>T	c.(1228-1230)GCC>GTC	p.A410V	XRRA1_uc001ovm.2_RNA|XRRA1_uc001ovn.2_Missense_Mutation_p.A33V|XRRA1_uc001ovo.2_Intron|XRRA1_uc001ovq.3_Intron|XRRA1_uc001ovp.3_Missense_Mutation_p.A135V|XRRA1_uc001ovr.2_Missense_Mutation_p.A33V|XRRA1_uc001ovs.1_Intron	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	410					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						TCGTGTATGGGCCACCAGAGG	0.547													31	46					0	0	1	0	0	
XRRA1	143570	broad.mit.edu	37	11	74641361	74641361	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:74641361T>G	uc009yub.2	-	6	716	c.384A>C	c.(382-384)GAA>GAC	p.E128D	XRRA1_uc001ovm.2_RNA|XRRA1_uc001ovo.2_5'UTR|XRRA1_uc001ovq.3_Missense_Mutation_p.E128D|XRRA1_uc001ovp.3_5'UTR|XRRA1_uc001ovr.2_5'UTR	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	128					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						GCAGCAGGTTTTCTGAGGCAT	0.393													3	8					0	0	1	0	0	
SLCO2B1	11309	broad.mit.edu	37	11	74913973	74913973	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:74913973G>A	uc001owb.2	+	12	2178	c.1791G>A	c.(1789-1791)TTG>TTA	p.L597L	SLCO2B1_uc010rrq.1_Silent_p.L342L|SLCO2B1_uc010rrr.1_Silent_p.L453L|SLCO2B1_uc010rrs.1_Silent_p.L481L|SLCO2B1_uc001owc.2_Silent_p.L370L|SLCO2B1_uc001owd.2_Silent_p.L575L	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	597	Helical; Name=11; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	ACAAGACTTTGGCTGTGGGCA	0.468													50	92					0	0	1	0	0	
MOGAT2	80168	broad.mit.edu	37	11	75439872	75439872	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:75439872G>T	uc010rru.1	+	5	688	c.688G>T	c.(688-690)GAC>TAC	p.D230Y	MOGAT2_uc001oww.1_3'UTR|MOGAT2_uc010rrv.1_Missense_Mutation_p.D148Y	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	230					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					CGGGGAGAATGACCTATTTGA	0.537													33	59					1.60099e-16	1.84126e-16	1	1	0	
ACER3	55331	broad.mit.edu	37	11	76726121	76726121	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:76726121T>G	uc009yum.1	+	8	663	c.559T>G	c.(559-561)TTA>GTA	p.L187V	ACER3_uc010rsg.1_Missense_Mutation_p.L145V|ACER3_uc009yul.1_RNA|ACER3_uc001oxu.2_RNA|ACER3_uc009yun.1_Missense_Mutation_p.L145V|ACER3_uc009yuo.1_Missense_Mutation_p.L92V|ACER3_uc010rsh.1_Missense_Mutation_p.L150V|ACER3_uc010rsi.1_Missense_Mutation_p.L92V|ACER3_uc010rsj.1_Missense_Mutation_p.L92V	NM_018367	NP_060837	Q9NUN7	ACER3_HUMAN	phytoceramidase, alkaline	187	Helical; (Potential).				ceramide metabolic process|phytosphingosine biosynthetic process|positive regulation of cell proliferation|sphingosine biosynthetic process	integral to endoplasmic reticulum membrane|integral to Golgi membrane	phytoceramidase activity				0						ATTGGGATTTTTATTTTGGAA	0.303													15	38					0	0	1	0	0	
MYO7A	4647	broad.mit.edu	37	11	76900472	76900472	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:76900472C>A	uc001oyb.2	+	28	3859	c.3587C>A	c.(3586-3588)TCT>TAT	p.S1196Y	MYO7A_uc010rsm.1_Missense_Mutation_p.S1185Y|MYO7A_uc001oyc.2_Missense_Mutation_p.S1196Y|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.S407Y	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1196	MyTH4 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						ATTCTCGTGTCTCTCTGCGTG	0.627													25	44					3.28513e-13	3.66545e-13	1	1	0	
PAK1	5058	broad.mit.edu	37	11	77090406	77090406	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:77090406G>A	uc001oyh.3	-	4	852	c.319C>T	c.(319-321)CTT>TTT	p.L107F	PAK1_uc010rso.1_Missense_Mutation_p.L9F|PAK1_uc001oyg.3_Missense_Mutation_p.L107F|PAK1_uc001oyi.1_Missense_Mutation_p.L107F	NM_002576	NP_002567	Q13153	PAK1_HUMAN	p21-activated kinase 1 isoform 2	107	Autoregulatory region.			L->F: Constitutively active.	apoptosis|axon guidance|cytoskeleton organization|ER-nucleus signaling pathway|positive regulation of JUN kinase activity|positive regulation of peptidyl-serine phosphorylation|protein autophosphorylation|T cell costimulation|T cell receptor signaling pathway	cytosol|focal adhesion|Golgi apparatus	ATP binding|collagen binding|protein binding|protein serine/threonine kinase activity			skin(2)|stomach(1)|lung(1)	4	all_cancers(14;1.75e-18)					GATGTCTGAAGCAAGCGGGCC	0.488													25	65					0	0	1	0	0	
RSF1	51773	broad.mit.edu	37	11	77412131	77412131	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:77412131C>A	uc001oyn.2	-	6	2263	c.2143G>T	c.(2143-2145)GAA>TAA	p.E715*	RSF1_uc001oym.2_Nonsense_Mutation_p.E463*	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	715					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			GCAGTGGTTTCTTCTTCAGGA	0.413													43	73					1.57019e-19	1.84548e-19	1	1	0	
RSF1	51773	broad.mit.edu	37	11	77412799	77412799	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:77412799G>T	uc001oyn.2	-	6	1595	c.1475C>A	c.(1474-1476)TCT>TAT	p.S492Y	RSF1_uc001oym.2_Missense_Mutation_p.S240Y	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	492					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			TGTTATGACAGAATTTAAGGA	0.393													54	112					2.47907e-22	2.95525e-22	1	1	0	
KCTD14	65987	broad.mit.edu	37	11	77727688	77727688	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:77727688C>A	uc001oyw.3	-	2	744	c.719G>T	c.(718-720)AGA>ATA	p.R240I		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	240						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			GAATTCGTTTCTTTTGGTGGG	0.453													27	46					3.01185e-09	3.22946e-09	1	1	0	
USP35	57558	broad.mit.edu	37	11	77911746	77911746	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:77911746G>A	uc009yva.1	+	6	1335	c.1089G>A	c.(1087-1089)TCG>TCA	p.S363S	USP35_uc001oze.2_Silent_p.S119S|USP35_uc001ozc.2_Intron|USP35_uc010rsp.1_Intron|USP35_uc001ozd.2_5'UTR|USP35_uc001ozf.2_Silent_p.S94S	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	363					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			AGGAGGACTCGAACTCGGGGA	0.647													25	28					0	0	1	0	0	
USP35	57558	broad.mit.edu	37	11	77920554	77920554	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:77920554G>A	uc009yva.1	+	10	1899	c.1653G>A	c.(1651-1653)TCG>TCA	p.S551S	USP35_uc001oze.2_Silent_p.S307S|USP35_uc001ozc.2_Silent_p.S119S|USP35_uc010rsp.1_5'UTR|USP35_uc001ozd.2_Silent_p.S162S|USP35_uc001ozf.2_Silent_p.S282S	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	551					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			AGTCCAGCTCGCCCTCTCCGC	0.572													20	40					0	0	1	0	0	
ODZ4	26011	broad.mit.edu	37	11	78369748	78369748	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:78369748C>A	uc001ozl.3	-	34	8128	c.7665G>T	c.(7663-7665)AAG>AAT	p.K2555N	ODZ4_uc001ozk.3_Missense_Mutation_p.K780N|ODZ4_uc009yvb.1_Intron	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2555	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ACTTCTTGGTCTTTGGAGCCT	0.522													21	31					8.10497e-08	8.54627e-08	1	1	0	
ODZ4	26011	broad.mit.edu	37	11	78412982	78412982	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:78412982C>T	uc001ozl.3	-	28	5139	c.4676G>A	c.(4675-4677)CGA>CAA	p.R1559Q	ODZ4_uc009yvb.1_Missense_Mutation_p.R143Q	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1559	NHL 5.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AAACCGAATTCGGATGTTCCC	0.493													14	54					0	0	1	0	0	
ODZ4	26011	broad.mit.edu	37	11	78413045	78413045	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:78413045G>A	uc001ozl.3	-	28	5076	c.4613C>T	c.(4612-4614)ACC>ATC	p.T1538I	ODZ4_uc009yvb.1_Missense_Mutation_p.T122I	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1538	NHL 5.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGAAGATGGGGTATTTAACTT	0.502													17	25					0	0	1	0	0	
ODZ4	26011	broad.mit.edu	37	11	78440647	78440647	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:78440647C>T	uc001ozl.3	-	22	3643	c.3180G>A	c.(3178-3180)AGG>AGA	p.R1060R		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1060	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GGTAGCTCAGCCTCATCTTGC	0.567													27	53					0	0	1	0	0	
PCF11	51585	broad.mit.edu	37	11	82878277	82878277	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:82878277G>A	uc001ozx.3	+	6	2273	c.1928G>A	c.(1927-1929)CGA>CAA	p.R643Q	PCF11_uc010rsu.1_Missense_Mutation_p.R643Q	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	643					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						CAACAGCATCGATTAAGTGTA	0.403													40	64					0	0	1	0	0	
ANKRD42	338699	broad.mit.edu	37	11	82936079	82936079	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:82936079G>T	uc001ozz.1	+	6	1107	c.685G>T	c.(685-687)GAC>TAC	p.D229Y	ANKRD42_uc010rsv.1_Missense_Mutation_p.D257Y|ANKRD42_uc001paa.2_Missense_Mutation_p.D257Y|ANKRD42_uc001pab.1_Missense_Mutation_p.D256Y	NM_182603	NP_872409	Q8N9B4	ANR42_HUMAN	ankyrin repeat domain 42	229	ANK 6.									skin(1)	1						TGAAGGAAAAGACCTAGAGGA	0.303													18	53					3.32936e-07	3.48551e-07	1	1	0	
DLG2	1740	broad.mit.edu	37	11	84996399	84996399	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:84996399T>G	uc001pak.2	-	4	363	c.51A>C	c.(49-51)GAA>GAC	p.E17D		NM_001142699	NP_001136171	Q15700	DLG2_HUMAN	chapsyn-110 isoform 1	Error:Variant_position_missing_in_Q15700_after_alignment						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CCTCATAAAATTCTTGGATAT	0.328													19	67					0	0	1	0	0	
TMEM126A	84233	broad.mit.edu	37	11	85365183	85365183	+	Nonsense_Mutation	SNP	C	T	T	rs121434508	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:85365183C>T	uc001par.2	+	3	259	c.163C>T	c.(163-165)CGA>TGA	p.R55*		NM_032273	NP_115649	Q9H061	T126A_HUMAN	transmembrane protein 126A	55						integral to membrane|mitochondrion				ovary(2)	2		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CAGTCTTTTTCGACGCATCTT	0.408													59	135					0	0	1	0	0	
TMEM135	65084	broad.mit.edu	37	11	86947710	86947710	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:86947710T>C	uc001pch.2	+	6	516	c.493T>C	c.(493-495)TAC>CAC	p.Y165H	TMEM135_uc010rtt.1_Missense_Mutation_p.Y26H|TMEM135_uc001pci.2_Missense_Mutation_p.Y143H	NM_022918	NP_075069	Q86UB9	TM135_HUMAN	transmembrane protein 135	165	Helical; (Potential).					integral to membrane					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				AGCTGCCATGTACATGTTCTT	0.333													19	43					0	0	1	0	0	
GRM5	2915	broad.mit.edu	37	11	88300351	88300351	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:88300351G>A	uc001pcq.2	-	7	2700	c.2500C>T	c.(2500-2502)CGC>TGC	p.R834C	GRM5_uc009yvm.2_Missense_Mutation_p.R834C	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	834	Cytoplasmic (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	AAGGCGCTGCGCACGTTTCTC	0.572													40	47					0	0	1	0	0	
TYR	7299	broad.mit.edu	37	11	88911375	88911375	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:88911375A>G	uc001pcs.2	+	1	336	c.254A>G	c.(253-255)TAT>TGT	p.Y85C		NM_000372	NP_000363	P14679	TYRO_HUMAN	tyrosinase precursor	85	Lumenal, melanosome (Potential).				eye pigment biosynthetic process|melanin biosynthetic process from tyrosine|visual perception	Golgi-associated vesicle|integral to membrane|lysosome|melanosome membrane|perinuclear region of cytoplasm	copper ion binding|monophenol monooxygenase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.0033)			Azelaic Acid(DB00548)|Mimosine(DB01055)|NADH(DB00157)	TCCGTCTTTTATAATAGGACC	0.507									Oculocutaneous_Albinism				17	33					0	0	1	0	0	
FOLH1B	219595	broad.mit.edu	37	11	89405123	89405123	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:89405123G>T	uc001pda.2	+	5	776	c.250G>T	c.(250-252)GCA>TCA	p.A84S		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	84					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TCAGAGTGGAGCAGCTGTTGT	0.373													33	64					8.11767e-34	9.98797e-34	1	1	0	
TRIM49	57093	broad.mit.edu	37	11	89537423	89537423	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:89537423T>C	uc001pdb.2	-	3	544	c.215A>G	c.(214-216)AAG>AGG	p.K72R		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	72						intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				AGAAGCCATCTTCTTCAAATG	0.443													17	65					0	0	1	0	0	
FAT3	120114	broad.mit.edu	37	11	92086173	92086173	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:92086173G>A	uc001pdj.3	+	1	912	c.895G>A	c.(895-897)GAA>AAA	p.E299K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	299	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGGAGAGATCGAATCTGTTTC	0.433										TCGA Ovarian(4;0.039)			27	39					0	0	1	0	0	
FAT3	120114	broad.mit.edu	37	11	92086393	92086393	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:92086393T>C	uc001pdj.3	+	1	1132	c.1115T>C	c.(1114-1116)GTC>GCC	p.V372A		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	372	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGAGACACTGTCCCCATTAGA	0.413										TCGA Ovarian(4;0.039)			17	18					0	0	1	0	0	
FAT3	120114	broad.mit.edu	37	11	92087946	92087946	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:92087946G>A	uc001pdj.3	+	1	2685	c.2668G>A	c.(2668-2670)GAC>AAC	p.D890N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	890	Cadherin 8.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTATGTAGCCGACCAGTTGGA	0.433										TCGA Ovarian(4;0.039)			39	83					0	0	1	0	0	
FAT3	120114	broad.mit.edu	37	11	92507255	92507255	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:92507255T>C	uc001pdj.3	+	6	4261	c.4244T>C	c.(4243-4245)ATT>ACT	p.I1415T		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1415	Cadherin 13.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTTGGGACAATTGTCATCGCA	0.423										TCGA Ovarian(4;0.039)			22	27					0	0	1	0	0	
FAT3	120114	broad.mit.edu	37	11	92532760	92532760	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:92532760C>A	uc001pdj.3	+	9	6598	c.6581C>A	c.(6580-6582)TCT>TAT	p.S2194Y		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2194	Cadherin 20.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TATACAGCATCTGTCAATGAA	0.438										TCGA Ovarian(4;0.039)			12	30					0.00185496	0.00188044	1	1	0	
FAT3	120114	broad.mit.edu	37	11	92577811	92577811	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:92577811G>A	uc001pdj.3	+	18	11295	c.11278G>A	c.(11278-11280)GAT>AAT	p.D3760N	FAT3_uc001pdi.3_Missense_Mutation_p.D200N	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3760	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CTTGTCACTCGATTCCCACGC	0.532										TCGA Ovarian(4;0.039)			8	10					0	0	1	0	0	
HEPHL1	341208	broad.mit.edu	37	11	93800819	93800819	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:93800819C>T	uc001pep.2	+	5	1123	c.966C>T	c.(964-966)GTC>GTT	p.V322V	uc001pen.1_RNA	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	322	Plastocyanin-like 2.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GGACTGATGTCGTCAACCTGT	0.478													41	124					0	0	1	0	0	
AMOTL1	154810	broad.mit.edu	37	11	94554964	94554964	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:94554964G>A	uc001pfb.2	+	4	1560	c.1390G>A	c.(1390-1392)GAC>AAC	p.D464N	AMOTL1_uc001pfc.2_Missense_Mutation_p.D414N	NM_130847	NP_570899	Q8IY63	AMOL1_HUMAN	angiomotin like 1	464	Potential.					cytoplasm|tight junction	identical protein binding			ovary(1)|breast(1)	2		Acute lymphoblastic leukemia(157;2.38e-05)|all_hematologic(158;0.00824)				GGGTTACTACGACAATGCCGA	0.522													28	73					0	0	1	0	0	
FAM76B	143684	broad.mit.edu	37	11	95512015	95512015	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:95512015C>T	uc001pfn.2	-	8	1111	c.799G>A	c.(799-801)GAC>AAC	p.D267N	FAM76B_uc001pfm.2_RNA	NM_144664	NP_653265	Q5HYJ3	FA76B_HUMAN	hypothetical protein LOC143684	267	Potential.										0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				ATGGTCTGGTCTCTCTGCTGT	0.358													17	41					0	0	1	0	0	
FAM76B	143684	broad.mit.edu	37	11	95512122	95512122	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:95512122C>T	uc001pfn.2	-	8	1005	c.693_splice	c.e8-1	p.S231_splice	FAM76B_uc001pfm.2_Splice_Site	NM_144664	NP_653265	Q5HYJ3	FA76B_HUMAN	hypothetical protein LOC143684												0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TATAGAGCTACTAAAAAGAAA	0.338													18	27					0	0	1	0	0	
FAM76B	143684	broad.mit.edu	37	11	95516362	95516362	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:95516362C>A	uc001pfn.2	-	5	742	c.430G>T	c.(430-432)GAA>TAA	p.E144*	FAM76B_uc001pfm.2_RNA	NM_144664	NP_653265	Q5HYJ3	FA76B_HUMAN	hypothetical protein LOC143684	144											0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTCCTTTGTTCTTTCGTCTTC	0.313													15	32					4.14922e-12	4.57968e-12	1	1	0	
PGR	5241	broad.mit.edu	37	11	100922293	100922293	+	Missense_Mutation	SNP	C	T	T	rs149186732	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:100922293C>T	uc001pgh.2	-	5	2962	c.2219G>A	c.(2218-2220)CGA>CAA	p.R740Q	PGR_uc001pgg.2_Missense_Mutation_p.R121Q|PGR_uc001pgi.2_Missense_Mutation_p.R638Q|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	740	Steroid-binding.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding	p.R740Q(1)		lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	ATGTAAGTTTCGAAAACCTAC	0.328													28	61					0	0	1	0	0	
KIAA1377	57562	broad.mit.edu	37	11	101832555	101832555	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:101832555A>C	uc001pgm.2	+	6	1059	c.789A>C	c.(787-789)GAA>GAC	p.E263D	KIAA1377_uc001pgn.2_Missense_Mutation_p.E219D|KIAA1377_uc010run.1_Missense_Mutation_p.E64D|KIAA1377_uc009yxa.1_Missense_Mutation_p.E64D	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	263							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AGCATGAAGAAATATATTTAA	0.368													15	47					0	0	1	0	0	
KIAA1377	57562	broad.mit.edu	37	11	101863564	101863564	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:101863564A>G	uc001pgm.2	+	10	3570	c.3300A>G	c.(3298-3300)ATA>ATG	p.I1100M	KIAA1377_uc001pgn.2_Missense_Mutation_p.I1056M|KIAA1377_uc010run.1_Missense_Mutation_p.I901M	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	1100							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		TACAAATAATACCACTTCTGG	0.269													12	25					0	0	1	0	0	
MMP8	4317	broad.mit.edu	37	11	102589167	102589167	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:102589167G>A	uc001phe.2	-	5	861	c.762C>T	c.(760-762)ATC>ATT	p.I254I	MMP8_uc010rut.1_Silent_p.I189I|MMP8_uc010ruu.1_Silent_p.I231I	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	254					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		GAATGCCATCGATGTCATCTT	0.483													5	25					0	0	1	0	0	
MMP8	4317	broad.mit.edu	37	11	102592161	102592161	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:102592161G>A	uc001phe.2	-	4	692	c.593C>T	c.(592-594)GCC>GTC	p.A198V	MMP8_uc010rut.1_Missense_Mutation_p.A133V|MMP8_uc010ruu.1_Missense_Mutation_p.A175V	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	198					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		TGTTTCTTCGGCATCAAAATG	0.408													11	54					0	0	1	0	0	
MMP10	4319	broad.mit.edu	37	11	102650413	102650413	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:102650413T>C	uc001phg.1	-	2	191	c.169A>G	c.(169-171)AAT>GAT	p.N57D		NM_002425	NP_002416	P09238	MMP10_HUMAN	matrix metalloproteinase 10 preproprotein	57					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			kidney(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_epithelial(12;0.00961)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0303)|Lung(13;0.0828)|all cancers(10;0.116)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0145)		ACAATGAGATTACTGTCCTTT	0.403													19	43					0	0	1	0	0	
DYNC2H1	79659	broad.mit.edu	37	11	102986023	102986023	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:102986023G>T	uc001pho.2	+	4	764	c.620G>T	c.(619-621)AGA>ATA	p.R207I	DYNC2H1_uc001phn.1_Missense_Mutation_p.R207I|DYNC2H1_uc009yxe.1_Missense_Mutation_p.R207I	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	207	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		ACAATTGCAAGAGTATGTGAT	0.308													5	3					0.014758	0.0148705	1	1	0	
DYNC2H1	79659	broad.mit.edu	37	11	103070011	103070011	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:103070011G>A	uc001pho.2	+	49	8038	c.7894G>A	c.(7894-7896)GAA>AAA	p.E2632K	DYNC2H1_uc001phn.1_Missense_Mutation_p.E2632K|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2632	AAA 4 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		ACTTTTCCACGAAGTCTTGGA	0.358													13	16					0	0	1	0	0	
DYNC2H1	79659	broad.mit.edu	37	11	103086472	103086472	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:103086472A>C	uc001pho.2	+	55	8861	c.8717A>C	c.(8716-8718)GAA>GCA	p.E2906A	DYNC2H1_uc001phn.1_Missense_Mutation_p.E2906A|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2906	Potential.|Stalk (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AAACTAAATGAAGCTAAAGCT	0.343													10	11					0	0	1	0	0	
CASP4	837	broad.mit.edu	37	11	104817810	104817810	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:104817810C>T	uc001pid.1	-	7	1108	c.1035G>A	c.(1033-1035)AAG>AAA	p.K345K	CASP4_uc001pib.1_Silent_p.K289K|CASP4_uc009yxg.1_Silent_p.K254K	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	345					apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		AGACACTTACCTTCCGAAATA	0.388													32	103					0	0	1	0	0	
CARD18	59082	broad.mit.edu	37	11	105009778	105009778	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:105009778A>C	uc001pis.2	-	1	35	c.29T>G	c.(28-30)ATT>AGT	p.I10S		NM_021571	NP_067546	P57730	CAR18_HUMAN	ICEBERG caspase-1 inhibitor	12	CARD.				inflammatory response|regulation of apoptosis	intracellular	cysteine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)	2						ATGGATAAAAATTCTTCTCTT	0.393													20	61					0	0	1	0	0	
GRIA4	2893	broad.mit.edu	37	11	105732782	105732782	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:105732782G>A	uc001pix.2	+	5	966	c.520G>A	c.(520-522)GCA>ACA	p.A174T	GRIA4_uc001piu.1_Missense_Mutation_p.A174T|GRIA4_uc001piw.2_Missense_Mutation_p.A174T|GRIA4_uc001piv.2_Missense_Mutation_p.A174T|GRIA4_uc009yxk.1_Missense_Mutation_p.A174T	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	174	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	TATGGAAAAAGCAGGACAAAA	0.368													31	60					0	0	1	0	0	
GUCY1A2	2977	broad.mit.edu	37	11	106810861	106810861	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:106810861G>T	uc001pjg.1	-	4	921	c.531C>A	c.(529-531)TTC>TTA	p.F177L	GUCY1A2_uc010rvo.1_Missense_Mutation_p.F177L|GUCY1A2_uc009yxn.1_Missense_Mutation_p.F177L	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	177					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		ATATATTAAAGAACTCTTCAC	0.338													30	73					2.65835e-16	3.05131e-16	1	1	0	
GUCY1A2	2977	broad.mit.edu	37	11	106888540	106888540	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:106888540C>T	uc001pjg.1	-	1	632	c.242G>A	c.(241-243)CGC>CAC	p.R81H	GUCY1A2_uc010rvo.1_Missense_Mutation_p.R81H|GUCY1A2_uc009yxn.1_Missense_Mutation_p.R81H	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	81					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		CCGCCTCCGGCGCTGCACCCT	0.493													5	6					0	0	1	0	0	
CUL5	8065	broad.mit.edu	37	11	107969212	107969212	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:107969212G>T	uc001pjv.2	+	18	2771	c.2104G>T	c.(2104-2106)GAA>TAA	p.E702*	CUL5_uc001pju.2_RNA	NM_003478	NP_003469	Q93034	CUL5_HUMAN	Vasopressin-activated calcium-mobilizing	702					cell cycle arrest|cell proliferation|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process|viral reproduction	cullin-RING ubiquitin ligase complex|cytosol	calcium channel activity|receptor activity|ubiquitin protein ligase binding			ovary(1)	1		all_cancers(61;7.09e-10)|all_epithelial(67;2.97e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|Melanoma(852;4.48e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;3.58e-05)|Epithelial(105;4.68e-05)|all cancers(92;0.00122)|OV - Ovarian serous cystadenocarcinoma(223;0.217)		GATGAGAGAAGAAGAGAATGA	0.313													37	59					3.78316e-11	4.13718e-11	1	1	0	
ATM	472	broad.mit.edu	37	11	108114687	108114687	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:108114687C>A	uc001pkb.1	+	6	889	c.504C>A	c.(502-504)TTC>TTA	p.F168L	ATM_uc009yxr.1_Missense_Mutation_p.F168L	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	168					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding	p.F168_V170>L(1)		haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		aaGAATTGTTCTCTGTGTACT	0.274			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			3	7					0.115264	0.115603	1	1	0	
ATM	472	broad.mit.edu	37	11	108138042	108138042	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:108138042G>A	uc001pkb.1	+	17	2996	c.2611G>A	c.(2611-2613)GAA>AAA	p.E871K	ATM_uc009yxr.1_Missense_Mutation_p.E871K|ATM_uc009yxs.1_5'Flank	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	871					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TGATGCAAACGAACCTGGAGA	0.363			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			22	37					0	0	1	0	0	
ATM	472	broad.mit.edu	37	11	108203492	108203492	+	Nonsense_Mutation	SNP	C	T	T	rs138941496	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:108203492C>T	uc001pkb.1	+	53	8177	c.7792C>T	c.(7792-7794)CGA>TGA	p.R2598*	ATM_uc009yxr.1_Nonsense_Mutation_p.R2598*|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Nonsense_Mutation_p.R1250*|ATM_uc001pkg.1_Nonsense_Mutation_p.R955*	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2598					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TTAATAGGATCGAACAGAGGC	0.323			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			9	26					0	0	1	0	0	
ATM	472	broad.mit.edu	37	11	108213967	108213967	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:108213967C>T	uc001pkb.1	+	57	8672	c.8287C>T	c.(8287-8289)CGA>TGA	p.R2763*	ATM_uc009yxr.1_Nonsense_Mutation_p.R2763*|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Nonsense_Mutation_p.R1415*	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2763	PI3K/PI4K.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		CCTCTCTCAGCGAAGTGGTGT	0.393			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			41	147					0	0	1	0	0	
ATM	472	broad.mit.edu	37	11	108216486	108216486	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:108216486C>A	uc001pkb.1	+	58	8820	c.8435C>A	c.(8434-8436)TCT>TAT	p.S2812Y	ATM_uc009yxr.1_Missense_Mutation_p.S2812Y|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.S1464Y	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2812	PI3K/PI4K.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		CAAAAAAAGTCTTTTGAAGAG	0.259			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			57	88					7.89702e-26	9.53743e-26	1	1	0	
ATM	472	broad.mit.edu	37	11	108216533	108216533	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:108216533C>A	uc001pkb.1	+	58	8867	c.8482C>A	c.(8482-8484)CAA>AAA	p.Q2828K	ATM_uc009yxr.1_Missense_Mutation_p.Q2828K|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.Q1480K	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2828	PI3K/PI4K.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		CCAAAATTTTCAACCAGTTTT	0.328			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			54	151					5.5144e-22	6.56027e-22	1	1	0	
DDX10	1662	broad.mit.edu	37	11	108593962	108593962	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:108593962G>T	uc001pkm.2	+	13	1803	c.1738G>T	c.(1738-1740)GAA>TAA	p.E580*	DDX10_uc001pkl.1_Nonsense_Mutation_p.E580*	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	580							ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		TACTGGTAATgaagaacagga	0.348			T	NUP98	AML*								16	33					1.15088e-07	1.20949e-07	1	1	0	
ZC3H12C	85463	broad.mit.edu	37	11	110007958	110007958	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:110007958G>T	uc009yxw.2	+	2	643	c.592G>T	c.(592-594)GAA>TAA	p.E198*	ZC3H12C_uc010rwc.1_Nonsense_Mutation_p.E199*|ZC3H12C_uc010rwd.1_Nonsense_Mutation_p.E199*|ZC3H12C_uc001pkr.3_Nonsense_Mutation_p.E167*|ZC3H12C_uc001pkq.2_Nonsense_Mutation_p.E167*	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	198							endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		TATTTTGGGAGAACTTGTCAA	0.368													12	38					3.07112e-06	3.18826e-06	1	1	0	
ZC3H12C	85463	broad.mit.edu	37	11	110035304	110035304	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:110035304A>C	uc009yxw.2	+	6	1545	c.1494A>C	c.(1492-1494)CAA>CAC	p.Q498H	ZC3H12C_uc010rwc.1_Missense_Mutation_p.Q499H|ZC3H12C_uc010rwd.1_Missense_Mutation_p.Q499H|ZC3H12C_uc001pkr.3_Missense_Mutation_p.Q467H	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	498							endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		TAAGGACACAAGTCTACCAAG	0.443													31	57					0	0	1	0	0	
FDX1	2230	broad.mit.edu	37	11	110333089	110333089	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:110333089G>A	uc001pkx.2	+	4	703	c.452G>A	c.(451-453)GGC>GAC	p.G151D		NM_004109	NP_004100	P10109	ADX_HUMAN	ferredoxin 1 precursor	151	2Fe-2S ferredoxin-type.				electron transport chain|transport	mitochondrial matrix	2 iron, 2 sulfur cluster binding|electron carrier activity|iron ion binding				0		all_cancers(61;1.59e-12)|all_epithelial(67;8.38e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|all cancers(92;5.27e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0384)|Colorectal(284;0.228)	Mitotane(DB00648)	TCACGGTTGGGCTGCCAAATC	0.408													19	29					0	0	1	0	0	
ARHGAP20	57569	broad.mit.edu	37	11	110451042	110451042	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:110451042A>C	uc001pkz.1	-	16	2913	c.2628T>G	c.(2626-2628)GGT>GGG	p.G876G	ARHGAP20_uc001pky.1_Silent_p.G853G|ARHGAP20_uc009yyb.1_Silent_p.G840G|ARHGAP20_uc001pla.1_Silent_p.G840G|ARHGAP20_uc001plb.2_Silent_p.G419G	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	876					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		CATGCAAGAGACCAGCTTCAC	0.468													59	106					0	0	1	0	0	
C11orf88	399949	broad.mit.edu	37	11	111404477	111404477	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:111404477A>G	uc001pln.3	+	4	346	c.346A>G	c.(346-348)ACA>GCA	p.T116A	C11orf88_uc009yyd.2_Missense_Mutation_p.T143A|C11orf88_uc001plo.1_Missense_Mutation_p.T143A	NM_001100388	NP_001093858	Q6PI97	CK088_HUMAN	hypothetical protein LOC399949 isoform 2	116											0						ACAGGCTAAAACAAGAGAAGA	0.363													23	55					0	0	1	0	0	
PPP2R1B	5519	broad.mit.edu	37	11	111624289	111624289	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:111624289C>T	uc001plx.1	-	9	1126	c.1042G>A	c.(1042-1044)GAT>AAT	p.D348N	PPP2R1B_uc001plw.1_Missense_Mutation_p.D348N|PPP2R1B_uc010rwi.1_Missense_Mutation_p.D284N|PPP2R1B_uc010rwj.1_Missense_Mutation_p.D187N|PPP2R1B_uc010rwk.1_Intron|PPP2R1B_uc010rwl.1_Missense_Mutation_p.D221N	NM_002716	NP_002707	P30154	2AAB_HUMAN	beta isoform of regulatory subunit A, protein	348	HEAT 9.						protein binding				0		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|Epithelial(105;2.36e-06)|all cancers(92;3.78e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0761)		TGATTGGTATCGGATACTAAT	0.294													13	24					0	0	1	0	0	
FDXACB1	91893	broad.mit.edu	37	11	111746444	111746444	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:111746444G>A	uc001pmc.3	-	5	1374	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	ALG9_uc010rwo.1_Intron|FDXACB1_uc009yyi.2_Silent_p.I210I	NM_138378	NP_612387	Q9BRP7	FDXA1_HUMAN	ferredoxin-fold anticodon binding domain	359					phenylalanyl-tRNA aminoacylation|tRNA processing		ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0						CTGGTACTTCGATGACATCCT	0.473													63	95					0	0	1	0	0	
BCO2	83875	broad.mit.edu	37	11	112064319	112064319	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:112064319G>A	uc001pnf.2	+	3	533	c.416G>A	c.(415-417)CGA>CAA	p.R139Q	BCO2_uc001pne.1_5'UTR|BCO2_uc001png.2_Missense_Mutation_p.R139Q|BCO2_uc001pnh.2_Missense_Mutation_p.R105Q|BCO2_uc010rwt.1_Missense_Mutation_p.R34Q|BCO2_uc009yyn.2_Missense_Mutation_p.R105Q|BCO2_uc001pni.2_Missense_Mutation_p.R105Q	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	139					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCTAAAAACCGAATTGTGATC	0.463													17	33					0	0	1	0	0	
TTC12	54970	broad.mit.edu	37	11	113233147	113233147	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:113233147A>G	uc001pnu.2	+	19	1744	c.1639A>G	c.(1639-1641)ACC>GCC	p.T547A	TTC12_uc001pnv.2_Missense_Mutation_p.T553A|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Missense_Mutation_p.T397A	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	547							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		TCTGAGCCGGACCCTTTCTTC	0.423													26	72					0	0	1	0	0	
ZW10	9183	broad.mit.edu	37	11	113614686	113614686	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:113614686A>C	uc001poe.2	-	10	1386	c.1349T>G	c.(1348-1350)GTA>GGA	p.V450G	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	450					cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		AGTATTGGATACTTTCTGTAC	0.388													29	62					0	0	1	0	0	
CLDN25	644672	broad.mit.edu	37	11	113650908	113650908	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:113650908G>A	uc009yyw.1	+	1	391	c.391G>A	c.(391-393)GCC>ACC	p.A131T		NM_001101389	NP_001094859	C9JDP6	CLD25_HUMAN	claudin 25	131	Helical; (Potential).					integral to membrane|tight junction	structural molecule activity				0						ATCCGCTTCAGCCACTACCCT	0.552													40	54					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	11	113661046	113661046	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:113661046G>A	uc001pof.1	+	1		c.1094G>A								Homo sapiens cDNA FLJ36034 fis, clone TESTI2017107, highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4.																		CAACATGACCGAAATGAGCTT	0.527													29	60					0	0	1	0	0	
USP28	57646	broad.mit.edu	37	11	113670038	113670038	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:113670038G>T	uc001poh.2	-	25	3191	c.3158C>A	c.(3157-3159)TCT>TAT	p.S1053Y	USP28_uc001pog.2_Missense_Mutation_p.S729Y|USP28_uc010rwy.1_Missense_Mutation_p.S896Y|USP28_uc001poi.2_Missense_Mutation_p.S376Y	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	1053					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		GTCATAGGGAGAATTGGGTCG	0.463													38	71					4.65686e-17	5.37613e-17	1	1	0	
HTR3A	3359	broad.mit.edu	37	11	113846067	113846067	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:113846067A>C	uc010rxb.1	+	1	271	c.38A>C	c.(37-39)CAG>CCG	p.Q13P	HTR3A_uc010rxa.1_Missense_Mutation_p.Q13P|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_5'Flank	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	7					digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	TGGGTCCAGCAGGCGCTGCTC	0.627													8	24					0	0	1	0	0	
REXO2	25996	broad.mit.edu	37	11	114320615	114320615	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:114320615G>A	uc001poy.2	+	7	775	c.632G>A	c.(631-633)CGA>CAA	p.R211Q	REXO2_uc001poz.2_3'UTR	NM_015523	NP_056338	Q9Y3B8	ORN_HUMAN	small fragment nuclease precursor	211					nucleotide metabolic process	mitochondrion|nucleus	3'-5' exonuclease activity|nucleic acid binding				0		all_cancers(61;5.06e-12)|all_epithelial(67;5.3e-06)|all_hematologic(158;7.68e-05)|Acute lymphoblastic leukemia(157;0.000966)|Melanoma(852;0.00153)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.0818)|Prostate(24;0.104)		BRCA - Breast invasive adenocarcinoma(274;2.65e-06)|Epithelial(105;6.09e-05)|all cancers(92;0.000494)		CAGTTTTACCGAAATAACATC	0.358													48	72					0	0	1	0	0	
CADM1	23705	broad.mit.edu	37	11	115085387	115085387	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:115085387C>T	uc001ppi.3	-	7	1064	c.935G>A	c.(934-936)CGC>CAC	p.R312H	CADM1_uc001ppf.3_Missense_Mutation_p.R312H|CADM1_uc001ppk.3_Missense_Mutation_p.R312H|CADM1_uc001ppj.3_Missense_Mutation_p.R312H|CADM1_uc001ppl.2_Missense_Mutation_p.R312H|CADM1_uc001pph.3_Missense_Mutation_p.R64H	NM_014333	NP_055148	Q9BY67	CADM1_HUMAN	immunoglobulin superfamily, member 4D isoform 1	312	Ig-like C2-type 2.|Extracellular (Potential).				adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			ovary(2)	2	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		AGCTTCACAGCGGTATGTACC	0.433													37	69					0	0	1	0	0	
ZNF259	8882	broad.mit.edu	37	11	116653694	116653694	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:116653694C>T	uc001ppp.2	-	11	1066	c.1033G>A	c.(1033-1035)GCA>ACA	p.A345T	ZNF259_uc009yzd.2_Missense_Mutation_p.A345T|ZNF259_uc001ppq.2_Missense_Mutation_p.A275T	NM_003904	NP_003895	O75312	ZPR1_HUMAN	zinc finger protein 259	345					cell proliferation|signal transduction	cytoplasm|nucleolus					0	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.61e-06)|all cancers(92;0.000139)|OV - Ovarian serous cystadenocarcinoma(223;0.153)		CCGAGGACTGCCATTCCCAGT	0.473													24	57					0	0	1	0	0	
APOA5	116519	broad.mit.edu	37	11	116661297	116661297	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:116661297G>A	uc001ppr.2	-	3	656	c.648C>T	c.(646-648)CAC>CAT	p.H216H	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Silent_p.H216H|APOA5_uc009yzf.2_Silent_p.H216H|APOA5_uc009yzg.2_Silent_p.H242H	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	216					acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		TGGCGGGGGCGTGCGGAGCCA	0.697													6	18					0	0	1	0	0	
APOA4	337	broad.mit.edu	37	11	116692535	116692535	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:116692535A>C	uc001pps.1	-	3	343	c.239T>G	c.(238-240)CTG>CGG	p.L80R		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		aaagggcaccagcttcttctg	0.199													35	71					0	0	1	0	0	
SIDT2	51092	broad.mit.edu	37	11	117066741	117066741	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:117066741G>A	uc001pqh.1	+	26	2499	c.2458G>A	c.(2458-2460)GAC>AAC	p.D820N	SIDT2_uc001pqi.1_Missense_Mutation_p.D817N|SIDT2_uc001pqj.1_Missense_Mutation_p.D132N|uc001pqk.1_RNA	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	820	Extracellular (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		ACTGGATGACGACCTGGATAC	0.602													34	95					0	0	1	0	0	
CEP164	22897	broad.mit.edu	37	11	117278689	117278689	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:117278689A>C	uc001prc.2	+	28	3697	c.3550A>C	c.(3550-3552)AAC>CAC	p.N1184H	CEP164_uc001prb.2_Missense_Mutation_p.N1187H|CEP164_uc001prf.2_Intron|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Missense_Mutation_p.N617H	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	1184	Potential.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		GAAAGGCCACAACCTGCTGAA	0.502													7	13					0	0	1	0	0	
DSCAML1	57453	broad.mit.edu	37	11	117307845	117307845	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:117307845G>A	uc001prh.1	-	26	4895	c.4893C>T	c.(4891-4893)TAC>TAT	p.Y1631Y		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1571	Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CACTGCCATCGTAGTCCAGGG	0.592													17	51					0	0	1	0	0	
DSCAML1	57453	broad.mit.edu	37	11	117375680	117375680	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:117375680T>C	uc001prh.1	-	10	2323	c.2321A>G	c.(2320-2322)GAC>GGC	p.D774G		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	714	Extracellular (Potential).|Ig-like C2-type 8.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GGGGTAGCCGTCCACCGAGCA	0.602													15	53					0	0	1	0	0	
DSCAML1	57453	broad.mit.edu	37	11	117387316	117387316	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:117387316C>T	uc001prh.1	-	8	1831	c.1829G>A	c.(1828-1830)CGC>CAC	p.R610H		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	550	Extracellular (Potential).|Ig-like C2-type 6.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity	p.R610L(1)		ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CACCACCTGGCGGTGGTTGTC	0.592													9	32					0	0	1	0	0	
TMPRSS13	84000	broad.mit.edu	37	11	117779398	117779398	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:117779398C>T	uc001prs.1	-	9	1304	c.1211G>A	c.(1210-1212)AGC>AAC	p.S404N	TMPRSS13_uc009yzr.1_Missense_Mutation_p.S83N|TMPRSS13_uc001prt.1_Missense_Mutation_p.S83N|TMPRSS13_uc001pru.1_Missense_Mutation_p.S404N	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	399	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		GGTGTAATTGCTGTTGATGAT	0.607													6	8					0	0	1	0	0	
SCN2B	6327	broad.mit.edu	37	11	118039303	118039303	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:118039303C>A	uc001psf.2	-	2	425	c.234G>T	c.(232-234)GAG>GAT	p.E78D		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	78	Ig-like C2-type.|Extracellular (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		GACTCACCATCTCCTCAGAGC	0.627													36	92					5.71845e-15	6.48651e-15	1	1	0	
AMICA1	120425	broad.mit.edu	37	11	118074145	118074145	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:118074145C>T	uc001psk.2	-	6	944	c.770G>A	c.(769-771)CGA>CAA	p.R257Q	AMICA1_uc001psg.2_Missense_Mutation_p.R67Q|AMICA1_uc001psh.2_Missense_Mutation_p.R218Q|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Missense_Mutation_p.R247Q|AMICA1_uc001psj.2_Missense_Mutation_p.R246Q|AMICA1_uc010rxw.1_Missense_Mutation_p.R218Q|AMICA1_uc010rxx.1_Missense_Mutation_p.R257Q|AMICA1_uc001psl.1_Missense_Mutation_p.R213Q	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	257	Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		TTAGATACTTCGAGGCTCTTC	0.418													75	181					0	0	1	0	0	
MLL	4297	broad.mit.edu	37	11	118352757	118352757	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:118352757A>C	uc001pta.2	+	7	3985	c.3962A>C	c.(3961-3963)AAA>ACA	p.K1321T	MLL_uc001ptb.2_Missense_Mutation_p.K1321T|MLL_uc001pte.1_RNA|MLL_uc009zab.1_Missense_Mutation_p.K47Q	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1321					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GAAGTTCCCAAAACCACTCCT	0.522			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								27	34					0	0	1	0	0	
ARCN1	372	broad.mit.edu	37	11	118452034	118452034	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:118452034G>A	uc001ptq.2	+	2	238	c.77G>A	c.(76-78)CGA>CAA	p.R26Q	ARCN1_uc009zah.2_Missense_Mutation_p.R26Q|ARCN1_uc010ryg.1_Intron|ARCN1_uc009zag.2_Missense_Mutation_p.R67Q	NM_001655	NP_001646	P48444	COPD_HUMAN	archain isoform 1	26					COPI coating of Golgi vesicle|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	clathrin adaptor complex|COPI vesicle coat|cytosol					0	all_hematologic(175;0.0349)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		GAAATGACCCGAACTCGGATT	0.443													50	111					0	0	1	0	0	
PHLDB1	23187	broad.mit.edu	37	11	118498939	118498939	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:118498939G>A	uc001ptr.1	+	7	1753	c.1400G>A	c.(1399-1401)CGA>CAA	p.R467Q	PHLDB1_uc001pts.2_Missense_Mutation_p.R467Q|PHLDB1_uc001ptt.2_Missense_Mutation_p.R467Q|PHLDB1_uc001ptu.1_Intron|PHLDB1_uc001ptv.1_Missense_Mutation_p.R267Q|PHLDB1_uc001ptw.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	467											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		CTGTCCCGGCGAGCTCTCTCC	0.687													32	92					0	0	1	0	0	
TREH	11181	broad.mit.edu	37	11	118529423	118529423	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:118529423C>T	uc001pty.1	-	14	1610	c.1565G>A	c.(1564-1566)GGA>GAA	p.G522E	TREH_uc009zaj.1_Missense_Mutation_p.G491E|TREH_uc001ptz.1_Missense_Mutation_p.G399E	NM_007180	NP_009111	O43280	TREA_HUMAN	trehalase precursor	522					polysaccharide digestion|trehalose catabolic process	anchored to plasma membrane	alpha,alpha-trehalase activity			pancreas(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.16e-05)		ACCGGGCTGTCCACCGTTGCT	0.612													3	8					0	0	1	0	0	
BCL9L	283149	broad.mit.edu	37	11	118771988	118771988	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:118771988C>T	uc001pug.2	-	6	3429	c.2464G>A	c.(2464-2466)GCC>ACC	p.A822T	BCL9L_uc009zal.2_Missense_Mutation_p.A817T	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	822	Met-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		CTGTTCTGGGCCCGAACCCGG	0.657													17	34					0	0	1	0	0	
SLC37A4	2542	broad.mit.edu	37	11	118895938	118895938	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:118895938A>G	uc010rys.1	-	10	1843	c.1086T>C	c.(1084-1086)TGT>TGC	p.C362C	SLC37A4_uc009zam.2_RNA|SLC37A4_uc009zan.2_RNA|SLC37A4_uc010ryr.1_Silent_p.C384C|SLC37A4_uc010ryt.1_Silent_p.C289C|SLC37A4_uc001pus.2_Silent_p.C362C	NM_001164277	NP_001157749	O43826	G6PT1_HUMAN	solute carrier family 37 (glucose-6-phosphate	362					glucose homeostasis|glucose metabolic process	endoplasmic reticulum membrane|integral to endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphate transmembrane transporter activity|glucose-6-phosphate transmembrane transporter activity			large_intestine(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.58e-05)		GGGAGGTGCCACACAAGTTGG	0.527									Glycogen_Storage_Disease_type_Ib				11	27					0	0	1	0	0	
DPAGT1	1798	broad.mit.edu	37	11	118967732	118967732	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:118967732G>A	uc001pvi.2	-	9	1623	c.1203C>T	c.(1201-1203)CTC>CTT	p.L401L	H2AFX_uc001pvg.2_5'Flank|H2AFX_uc001pvh.1_5'Flank|DPAGT1_uc001pvj.2_Silent_p.L294L|DPAGT1_uc009zaq.2_RNA|DPAGT1_uc001pvk.2_Silent_p.L229L|DPAGT1_uc010ryz.1_Silent_p.L401L|DPAGT1_uc001pvm.1_3'UTR|DPAGT1_uc010rza.1_Silent_p.L320L	NM_001382	NP_001373	Q9H3H5	GPT_HUMAN	UDP-N-acetylglucosamine-dolichyl-phosphate	401	Lumenal (Potential).				dolichol biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein oligomerization	integral to endoplasmic reticulum membrane|microsome	phospho-N-acetylmuramoyl-pentapeptide-transferase activity|transferase activity, transferring glycosyl groups|UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity			breast(2)|ovary(1)	3	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.55e-05)		AGAGTCGAACGAGCTGATATC	0.493													18	26					0	0	1	0	0	
MFRP	83552	broad.mit.edu	37	11	119216216	119216216	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:119216216C>A	uc001pwj.2	-	5	715	c.555G>T	c.(553-555)AAG>AAT	p.K185N	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Missense_Mutation_p.K185N	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	Error:Variant_position_missing_in_Q9BXJ0_after_alignment						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		GGGCTTCGATCTTGAGCTGTA	0.577													15	43					1.3612e-06	1.41942e-06	1	1	0	
ARHGEF12	23365	broad.mit.edu	37	11	120292551	120292551	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:120292551G>A	uc001pxl.1	+	6	345	c.338G>A	c.(337-339)CGA>CAA	p.R113Q	ARHGEF12_uc009zat.2_Missense_Mutation_p.R94Q|ARHGEF12_uc010rzn.1_Missense_Mutation_p.R10Q|ARHGEF12_uc009zau.1_Missense_Mutation_p.R10Q	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	113	PDZ.				apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		ACAGGTGATCGAATCATCAAG	0.338			T	MLL	AML								30	68					0	0	1	0	0	
ARHGEF12	23365	broad.mit.edu	37	11	120350997	120350997	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:120350997G>A	uc001pxl.1	+	38	4102	c.4095G>A	c.(4093-4095)ATG>ATA	p.M1365I	ARHGEF12_uc009zat.2_Missense_Mutation_p.M1346I|ARHGEF12_uc009zau.1_Missense_Mutation_p.M1262I	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	1365					apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		CCCCAGAGATGCCTACCATGG	0.493			T	MLL	AML								44	82					0	0	1	0	0	
TECTA	7007	broad.mit.edu	37	11	121000423	121000423	+	Missense_Mutation	SNP	C	T	T	rs111759871	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:121000423C>T	uc010rzo.1	+	9	2444	c.2444C>T	c.(2443-2445)ACG>ATG	p.T815M		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	815	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		AAAAACAGTACGACAGTGGAG	0.453													61	97					0	0	1	0	0	
SC5DL	6309	broad.mit.edu	37	11	121174120	121174120	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:121174120T>G	uc001pxu.2	+	2	184	c.36T>G	c.(34-36)TTT>TTG	p.F12L	SC5DL_uc001pxs.1_Missense_Mutation_p.F12L|SC5DL_uc001pxt.2_Missense_Mutation_p.F12L|SC5DL_uc001pxv.2_Missense_Mutation_p.F12L	NM_006918	NP_008849	O75845	SC5D_HUMAN	sterol-C5-desaturase	12					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	C-5 sterol desaturase activity|iron ion binding|lathosterol oxidase activity			ovary(1)	1		Breast(109;0.00328)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)	OV - Ovarian serous cystadenocarcinoma(1;0.0334)	BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.144)		ATTACTATTTTTTTACACCAT	0.388													36	88					0	0	1	0	0	
SORL1	6653	broad.mit.edu	37	11	121429396	121429396	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:121429396G>T	uc001pxx.2	+	20	2840	c.2760G>T	c.(2758-2760)GTG>GTT	p.V920V		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	920	Extracellular (Potential).|LDL-receptor class B 3.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CTGAGGATGTGAAGTGGCCCA	0.547													37	124					3.76114e-14	4.23289e-14	1	1	0	
SORL1	6653	broad.mit.edu	37	11	121478832	121478832	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:121478832G>A	uc001pxx.2	+	38	5266	c.5186G>A	c.(5185-5187)CGT>CAT	p.R1729H	SORL1_uc010rzp.1_Missense_Mutation_p.R575H|SORL1_uc010rzq.1_Missense_Mutation_p.R344H	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1729	Extracellular (Potential).|Fibronectin type-III 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GTGACTAGTCGTGGAATAGGA	0.363													19	42					0	0	1	0	0	
SORL1	6653	broad.mit.edu	37	11	121491794	121491794	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:121491794G>A	uc001pxx.2	+	44	5991	c.5911G>A	c.(5911-5913)GAT>AAT	p.D1971N	SORL1_uc010rzp.1_Missense_Mutation_p.D817N|SORL1_uc010rzq.1_Missense_Mutation_p.D586N	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1971	Extracellular (Potential).|Fibronectin type-III 5.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TGCAGTCAAAGATCTCATAAG	0.398													16	39					0	0	1	0	0	
ASAM	79827	broad.mit.edu	37	11	122944366	122944366	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:122944366C>T	uc001pyt.2	-	7	1297	c.938G>A	c.(937-939)CGC>CAC	p.R313H		NM_024769	NP_079045	Q9H6B4	CLMP_HUMAN	adipocyte-specific adhesion molecule precursor	313	Ser-rich.|Cytoplasmic (Potential).					integral to membrane|tight junction					0		Breast(109;0.0025)|Lung NSC(97;0.0179)|all_lung(97;0.0182)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.73e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		CCGCTGGCTGCGTGAGGCACT	0.602													49	96					0	0	1	0	0	
GRAMD1B	57476	broad.mit.edu	37	11	123477453	123477453	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:123477453A>G	uc001pyx.2	+	10	1360	c.1031A>G	c.(1030-1032)GAC>GGC	p.D344G	GRAMD1B_uc001pyw.2_Missense_Mutation_p.D351G|GRAMD1B_uc010rzw.1_Missense_Mutation_p.D304G|GRAMD1B_uc010rzx.1_Missense_Mutation_p.D304G|GRAMD1B_uc009zbe.1_Missense_Mutation_p.D340G|GRAMD1B_uc001pyy.2_5'Flank	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	344						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		GACTTCAATGACAATGAGGAC	0.517													8	21					0	0	1	0	0	
OR8D4	338662	broad.mit.edu	37	11	123778058	123778058	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:123778058G>T	uc010saa.1	+	1	920	c.920G>T	c.(919-921)AGA>ATA	p.R307I		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		CTTTTAAGAAGAAAAATATCT	0.274													16	37					2.32078e-09	2.49434e-09	1	1	0	
OR8B12	219858	broad.mit.edu	37	11	124413406	124413406	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:124413406C>A	uc010sam.1	-	1	145	c.145G>T	c.(145-147)GGG>TGG	p.G49W		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		GAGTTCAGCCCAATCAGGGTT	0.498													31	65					2.49534e-26	3.01769e-26	1	1	0	
PANX3	116337	broad.mit.edu	37	11	124489454	124489454	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:124489454A>G	uc001qah.2	+	4	802	c.802A>G	c.(802-804)ATT>GTT	p.I268V		NM_052959	NP_443191	Q96QZ0	PANX3_HUMAN	pannexin 3	268	Helical; (Potential).				protein hexamerization	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0219)		ATCACTGTCCATTTTCCAGAT	0.468													23	52					0	0	1	0	0	
HEPACAM	220296	broad.mit.edu	37	11	124793897	124793897	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:124793897G>A	uc001qbk.2	-	3	843	c.437C>T	c.(436-438)TCG>TTG	p.S146L	HEPACAM_uc009zbj.2_5'Flank|HEPACAM_uc001qbl.1_Missense_Mutation_p.S146L	NM_152722	NP_689935	Q14CZ8	HECAM_HUMAN	hepatocyte cell adhesion molecule precursor	146	Extracellular (Potential).				cell adhesion|cell cycle arrest|regulation of growth	cytoplasm|integral to membrane				pancreas(1)	1	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.54e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		CTGTGGCCTCGAAATGGGCAC	0.552													3	20					0	0	1	0	0	
CCDC15	80071	broad.mit.edu	37	11	124858023	124858023	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:124858023A>C	uc001qbm.3	+	8	2160	c.1901A>C	c.(1900-1902)AAA>ACA	p.K634T		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	634						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		TTTCTACCAAAATATCAGGTA	0.378													32	66					0	0	1	0	0	
CCDC15	80071	broad.mit.edu	37	11	124863121	124863121	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:124863121T>C	uc001qbm.3	+	11	2455	c.2196T>C	c.(2194-2196)AAT>AAC	p.N732N		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	732						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CAAGAGGAAATACTCCTGGAG	0.358													4	17					0	0	1	0	0	
CCDC15	80071	broad.mit.edu	37	11	124908850	124908850	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:124908850G>T	uc001qbm.3	+	15	2878	c.2619G>T	c.(2617-2619)GAG>GAT	p.E873D		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	873	Potential.					centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		AAATCCAGGAGAAAATGCAGC	0.363													40	104					1.57019e-19	1.84548e-19	1	1	0	
PKNOX2	63876	broad.mit.edu	37	11	125301169	125301169	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125301169G>T	uc001qbu.2	+	13	1614	c.1300G>T	c.(1300-1302)GAA>TAA	p.E434*	PKNOX2_uc010saz.1_Nonsense_Mutation_p.E405*|PKNOX2_uc010sba.1_Nonsense_Mutation_p.E405*|PKNOX2_uc010sbb.1_Nonsense_Mutation_p.E370*|PKNOX2_uc001qbv.2_Nonsense_Mutation_p.E199*	NM_022062	NP_071345	Q96KN3	PKNX2_HUMAN	PBX/knotted 1 homeobox 2	434	Asp/Glu-rich (acidic).					nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(109;0.00234)|all_lung(97;0.0191)|Lung NSC(97;0.0196)|Medulloblastoma(222;0.0447)|all_neural(223;0.116)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.117)		TGGGACAgaagaagaggatga	0.398													9	22					0.000274275	0.000279565	1	1	0	
EI24	9538	broad.mit.edu	37	11	125451124	125451124	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125451124C>T	uc001qca.2	+	9	933	c.691C>T	c.(691-693)CGG>TGG	p.R231W	EI24_uc001qcb.2_Intron|EI24_uc010sbd.1_RNA|EI24_uc009zbl.2_Missense_Mutation_p.R231W|EI24_uc001qcc.2_RNA|EI24_uc010sbe.1_Missense_Mutation_p.R217W|EI24_uc010sbf.1_RNA	NM_004879	NP_004870	O14681	EI24_HUMAN	etoposide induced 2.4 isoform 1	231					apoptosis|autophagy|induction of apoptosis|negative regulation of cell growth	endoplasmic reticulum membrane|integral to membrane|nuclear membrane				ovary(1)	1	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.64e-07)|OV - Ovarian serous cystadenocarcinoma(99;0.0975)		AATGCACCAGCGGTTGTCTAA	0.363													13	21					0	0	1	0	0	
STT3A	3703	broad.mit.edu	37	11	125488282	125488282	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125488282C>A	uc001qcd.2	+	16	1899	c.1789C>A	c.(1789-1791)CTT>ATT	p.L597I	STT3A_uc001qce.2_Missense_Mutation_p.L597I|STT3A_uc010sbg.1_Missense_Mutation_p.L505I|STT3A_uc009zbn.2_Missense_Mutation_p.L319I	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1	597	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		CAACAAGTTTCTTTGGATGGT	0.408													16	32					4.7546e-09	5.08881e-09	1	1	0	
CHEK1	1111	broad.mit.edu	37	11	125497713	125497713	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125497713T>G	uc009zbo.2	+	3	1169	c.277T>G	c.(277-279)TTT>GTT	p.F93V	CHEK1_uc010sbh.1_Intron|CHEK1_uc010sbi.1_Missense_Mutation_p.F93V|CHEK1_uc001qcf.3_Missense_Mutation_p.F93V|CHEK1_uc009zbp.2_Missense_Mutation_p.F93V|CHEK1_uc001qcg.3_Missense_Mutation_p.F93V|CHEK1_uc009zbq.2_Missense_Mutation_p.F93V|CHEK1_uc001qci.1_RNA	NM_001114122	NP_001107594	O14757	CHK1_HUMAN	checkpoint kinase 1	93	Protein kinase.				cellular response to mechanical stimulus|DNA repair|DNA replication|gamete generation|negative regulation of cell proliferation|reciprocal meiotic recombination|regulation of cyclin-dependent protein kinase activity|replicative senescence	condensed nuclear chromosome|microtubule organizing center|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|skin(1)	6	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0748)		AGGAGAGCTTTTTGACAGAAT	0.279								Other_conserved_DNA_damage_response_genes					20	64					0	0	1	0	0	
CHEK1	1111	broad.mit.edu	37	11	125505412	125505412	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125505412C>T	uc009zbo.2	+	7	1594	c.702C>T	c.(700-702)ATC>ATT	p.I234I	CHEK1_uc010sbh.1_Silent_p.I250I|CHEK1_uc010sbi.1_Silent_p.I234I|CHEK1_uc001qcf.3_Silent_p.I234I|CHEK1_uc009zbp.2_Silent_p.I234I|CHEK1_uc001qcg.3_Silent_p.I234I|CHEK1_uc009zbq.2_Silent_p.I234I|CHEK1_uc001qci.1_RNA	NM_001114122	NP_001107594	O14757	CHK1_HUMAN	checkpoint kinase 1	234	Protein kinase.				cellular response to mechanical stimulus|DNA repair|DNA replication|gamete generation|negative regulation of cell proliferation|reciprocal meiotic recombination|regulation of cyclin-dependent protein kinase activity|replicative senescence	condensed nuclear chromosome|microtubule organizing center|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|skin(1)	6	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0748)		GGAAAAAAATCGATTCTGCTC	0.358								Other_conserved_DNA_damage_response_genes					54	141					0	0	1	0	0	
PATE1	160065	broad.mit.edu	37	11	125617607	125617607	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125617607T>G	uc001qct.2	+	4	149	c.137T>G	c.(136-138)GTT>GGT	p.V46G	PATE1_uc009zbr.2_Missense_Mutation_p.V34G	NM_138294	NP_612151	Q8WXA2	PATE1_HUMAN	expressed in prostate and testis precursor	46						extracellular region					0						ATAGAAATTGTTCAGTGTAGG	0.498													30	60					0	0	1	0	0	
PUS3	83480	broad.mit.edu	37	11	125763722	125763722	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125763722C>T	uc001qcy.2	-	4	1502	c.1404G>A	c.(1402-1404)ACG>ACA	p.T468T	HYLS1_uc009zbv.2_Intron|HYLS1_uc001qcx.3_Intron	NM_031307	NP_112597	Q9BZE2	PUS3_HUMAN	pseudouridylate synthase 3	468						nucleus	RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.131)|all_lung(97;0.139)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.043)		AGACCCTCTTCGTTGGTGTCT	0.403													59	105					0	0	1	0	0	
PUS3	83480	broad.mit.edu	37	11	125763900	125763900	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125763900C>T	uc001qcy.2	-	4	1324	c.1226G>A	c.(1225-1227)CGC>CAC	p.R409H	HYLS1_uc009zbv.2_Intron|HYLS1_uc001qcx.3_Intron	NM_031307	NP_112597	Q9BZE2	PUS3_HUMAN	pseudouridylate synthase 3	409						nucleus	RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.131)|all_lung(97;0.139)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.043)		CTTATATGTGCGCATCTTCAC	0.473													58	123					0	0	1	0	0	
HYLS1	219844	broad.mit.edu	37	11	125769653	125769653	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125769653C>A	uc009zbv.2	+	4	924	c.390C>A	c.(388-390)GAC>GAA	p.D130E	HYLS1_uc001qcx.3_Missense_Mutation_p.D130E|PUS3_uc001qcy.2_Intron	NM_145014	NP_659451	Q96M11	HYLS1_HUMAN	hydrolethalus syndrome 1	130						centrosome|nucleus				upper_aerodigestive_tract(1)	1	all_hematologic(175;0.177)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.131)|all_lung(97;0.139)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		ATCTCTGGGACTTAAGACAAA	0.393													41	57					1.47197e-15	1.68038e-15	1	1	0	
DDX25	29118	broad.mit.edu	37	11	125792754	125792754	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:125792754A>C	uc001qcz.3	+	12	1571	c.1430A>C	c.(1429-1431)GAA>GCA	p.E477A		NM_013264	NP_037396	Q9UHL0	DDX25_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	477	Helicase C-terminal.				mRNA export from nucleus|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|nucleus	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0203)|Lung NSC(97;0.0203)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.14e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.046)		GACATGGATGAAATTGAAAAG	0.343											OREG0021479	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	10					0	0	1	0	0	
RPUSD4	84881	broad.mit.edu	37	11	126074205	126074205	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:126074205C>T	uc001qde.2	-	6	869	c.815G>A	c.(814-816)CGA>CAA	p.R272Q	RPUSD4_uc010sbl.1_Missense_Mutation_p.R79Q|RPUSD4_uc009zbz.2_Missense_Mutation_p.R241Q|RPUSD4_uc009zby.2_RNA	NM_032795	NP_116184	Q96CM3	RUSD4_HUMAN	RNA pseudouridylate synthase domain containing 4	272					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			breast(1)	1	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0761)		CAAGTGAACTCGAAGCTGATG	0.363													24	49					0	0	1	0	0	
FAM118B	79607	broad.mit.edu	37	11	126104933	126104933	+	Missense_Mutation	SNP	G	A	A	rs142027987	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:126104933G>A	uc001qdf.2	+	3	220	c.37G>A	c.(37-39)GAG>AAG	p.E13K	FAM118B_uc009zca.2_Missense_Mutation_p.E17K|FAM118B_uc001qdg.2_Missense_Mutation_p.E13K	NM_024556	NP_078832	Q9BPY3	F118B_HUMAN	hypothetical protein LOC79607	13											0	all_hematologic(175;0.145)	Breast(109;0.00156)|Lung NSC(97;0.00948)|all_lung(97;0.0101)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.15e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0784)		TGATATAGACGAGATTTTTGG	0.403													11	27					0	0	1	0	0	
ARHGAP32	9743	broad.mit.edu	37	11	128844756	128844756	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:128844756C>T	uc009zcp.2	-	20	2294	c.2294G>A	c.(2293-2295)GGG>GAG	p.G765E	ARHGAP32_uc009zcq.1_Missense_Mutation_p.G725E|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.G416E	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	765					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						ATGAAGCAGCCCTCCTTCCTC	0.488													26	44					0	0	1	0	0	
ARHGAP32	9743	broad.mit.edu	37	11	128936648	128936648	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:128936648T>C	uc009zcp.2	-	6	605	c.605A>G	c.(604-606)GAC>GGC	p.D202G	ARHGAP32_uc009zcq.1_Missense_Mutation_p.D162G|ARHGAP32_uc001qfb.2_5'UTR	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	202	PX; atypical.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						CTTCAGGGTGTCAGAACGGGG	0.368													10	27					0	0	1	0	0	
ADAMTS8	11095	broad.mit.edu	37	11	130284622	130284622	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:130284622C>A	uc001qgg.3	-	5	1728	c.1370G>T	c.(1369-1371)GGG>GTG	p.G457V	ADAMTS8_uc001qgf.2_5'Flank	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	457	Disintegrin.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		GAAATCCGGCCCAAAGATCTG	0.662													24	60					5.35356e-11	5.83973e-11	1	1	0	
ADAMTS15	170689	broad.mit.edu	37	11	130319043	130319043	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:130319043G>T	uc010scd.1	+	1	175	c.175G>T	c.(175-177)GCA>TCA	p.A59S		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	59					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		TCAGATCACAGCATTTCAGGA	0.602													35	65					4.11147e-13	4.58684e-13	1	1	0	
NCAPD3	23310	broad.mit.edu	37	11	134079276	134079276	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:134079276C>A	uc001qhd.1	-	5	1269	c.663G>T	c.(661-663)AAG>AAT	p.K221N	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	221					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		TTAAAAAATTCTTTAAAAGGT	0.353													20	37					1.56452e-12	1.73502e-12	1	1	0	
VPS26B	112936	broad.mit.edu	37	11	134095105	134095105	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr11:134095105A>G	uc001qhe.2	+	1	545	c.89A>G	c.(88-90)GAG>GGG	p.E30G	NCAPD3_uc001qhd.1_5'Flank|NCAPD3_uc010scm.1_5'Flank|NCAPD3_uc009zda.1_5'Flank|NCAPD3_uc010scn.1_5'Flank	NM_052875	NP_443107	Q4G0F5	VP26B_HUMAN	vacuolar protein sorting 26 homolog B	30					protein transport|vacuolar transport	cytosol|retromer complex					0	all_hematologic(175;0.127)	all_cancers(12;1.1e-21)|all_epithelial(12;3.77e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;2.43e-10)|all cancers(11;2.94e-09)|BRCA - Breast invasive adenocarcinoma(10;9.57e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00164)|Lung(977;0.216)		CACAAGACGGAGGACGGGAAG	0.597													18	22					0	0	1	0	0	
SLC6A13	6540	broad.mit.edu	37	12	331772	331772	+	Missense_Mutation	SNP	C	T	T	rs142374546	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:331772C>T	uc001qic.1	-	13	1494	c.1441G>A	c.(1441-1443)GAA>AAA	p.E481K	SLC6A13_uc009zdj.1_Missense_Mutation_p.E471K|SLC6A13_uc010sdl.1_Missense_Mutation_p.E389K	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	481					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			ATCATGTCTTCGATGTTGTCG	0.483													9	15					0	0	1	0	0	
SLC6A13	6540	broad.mit.edu	37	12	335650	335650	+	Silent	SNP	G	A	A	rs149831603	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:335650G>A	uc001qic.1	-	9	1019	c.966C>T	c.(964-966)AGC>AGT	p.S322S	SLC6A13_uc009zdj.1_Silent_p.S312S|SLC6A13_uc010sdl.1_Silent_p.S230S	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	322	Helical; Name=7; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			AGCTGGTGCCGCTGTTGAGGA	0.617													17	33					0	0	1	0	0	
KDM5A	5927	broad.mit.edu	37	12	430229	430229	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:430229C>A	uc001qif.1	-	18	2836	c.2473G>T	c.(2473-2475)GAA>TAA	p.E825*	KDM5A_uc001qie.1_Nonsense_Mutation_p.E825*|KDM5A_uc010sdn.1_Nonsense_Mutation_p.E784*	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	825					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						GCCTTCAATTCTTCCACTGTC	0.398			T 	NUP98	AML								50	113					3.16986e-14	3.57286e-14	1	1	0	
KDM5A	5927	broad.mit.edu	37	12	432777	432777	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:432777C>A	uc001qif.1	-	15	2502	c.2139G>T	c.(2137-2139)AAG>AAT	p.K713N	KDM5A_uc001qie.1_Missense_Mutation_p.K713N|KDM5A_uc010sdn.1_Missense_Mutation_p.K672N|KDM5A_uc010sdo.1_Missense_Mutation_p.K332N	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	713					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						TAAGACATTTCTTCTGCATGG	0.378			T 	NUP98	AML								35	92					6.70999e-13	7.4604e-13	1	1	0	
B4GALNT3	283358	broad.mit.edu	37	12	665919	665919	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:665919A>G	uc001qii.1	+	15	2267	c.2267A>G	c.(2266-2268)GAC>GGC	p.D756G	B4GALNT3_uc001qik.1_Missense_Mutation_p.D305G	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	756	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CTGGTCTGGGACCCACACAAC	0.647													11	27					0	0	1	0	0	
WNK1	65125	broad.mit.edu	37	12	862916	862916	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:862916A>G	uc001qio.3	+	1	692	c.185A>G	c.(184-186)GAC>GGC	p.D62G	WNK1_uc001qin.2_Missense_Mutation_p.D62G|WNK1_uc001qip.3_Missense_Mutation_p.D62G	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	62					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CACACTATGGACAAGGACAGC	0.667													14	38					0	0	1	0	0	
ERC1	23085	broad.mit.edu	37	12	1289715	1289715	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:1289715C>A	uc001qjb.2	+	9	1988	c.1747C>A	c.(1747-1749)CTT>ATT	p.L583I	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Missense_Mutation_p.L555I|ERC1_uc001qja.2_RNA|ERC1_uc001qjd.2_RNA|ERC1_uc001qjf.2_Missense_Mutation_p.L583I|ERC1_uc010sdv.1_Missense_Mutation_p.L331I|ERC1_uc009zdp.2_Missense_Mutation_p.L223I	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	583	Potential.				I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding	p.L583I(1)		ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			GATTGAAAATCTTCAAGAGCA	0.368													14	31					9.05144e-12	9.95561e-12	1	1	0	
DCP1B	196513	broad.mit.edu	37	12	2058449	2058449	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:2058449A>G	uc001qjx.1	-	8	1656	c.1576T>C	c.(1576-1578)TCC>CCC	p.S526P	DCP1B_uc010sdy.1_Missense_Mutation_p.S424P	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	526					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			ACCATGGGGGACATAAGCAGA	0.617													14	37					0	0	1	0	0	
CACNA1C	775	broad.mit.edu	37	12	2224703	2224703	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:2224703C>T	uc009zdu.1	+	2	676	c.363C>T	c.(361-363)GTC>GTT	p.V121V	CACNA1C_uc009zdv.1_Silent_p.V121V|CACNA1C_uc001qkb.2_Silent_p.V121V|CACNA1C_uc001qkc.2_Silent_p.V121V|CACNA1C_uc001qke.2_Silent_p.V121V|CACNA1C_uc001qkf.2_Silent_p.V121V|CACNA1C_uc001qjz.2_Silent_p.V121V|CACNA1C_uc001qkd.2_Silent_p.V121V|CACNA1C_uc001qkg.2_Silent_p.V121V|CACNA1C_uc009zdw.1_Silent_p.V121V|CACNA1C_uc001qkh.2_Silent_p.V121V|CACNA1C_uc001qkl.2_Silent_p.V121V|CACNA1C_uc001qkn.2_Silent_p.V121V|CACNA1C_uc001qko.2_Silent_p.V121V|CACNA1C_uc001qkp.2_Silent_p.V121V|CACNA1C_uc001qkr.2_Silent_p.V121V|CACNA1C_uc001qku.2_Silent_p.V121V|CACNA1C_uc001qkq.2_Silent_p.V121V|CACNA1C_uc001qks.2_Silent_p.V121V|CACNA1C_uc001qkt.2_Silent_p.V121V	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	121	Cytoplasmic (Potential).|I.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCAGCATTGTCGAATGGAAAT	0.647													23	43					0	0	1	0	0	
CACNA1C	775	broad.mit.edu	37	12	2602492	2602492	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:2602492C>T	uc009zdu.1	+	7	1366	c.1053C>T	c.(1051-1053)TTC>TTT	p.F351F	CACNA1C_uc009zdv.1_Silent_p.F348F|CACNA1C_uc001qkb.2_Silent_p.F351F|CACNA1C_uc001qkc.2_Silent_p.F351F|CACNA1C_uc001qke.2_Silent_p.F351F|CACNA1C_uc001qkf.2_Silent_p.F351F|CACNA1C_uc001qjz.2_Silent_p.F351F|CACNA1C_uc001qkd.2_Silent_p.F351F|CACNA1C_uc001qkg.2_Silent_p.F351F|CACNA1C_uc009zdw.1_Silent_p.F351F|CACNA1C_uc001qkh.2_Silent_p.F351F|CACNA1C_uc001qkl.2_Silent_p.F351F|CACNA1C_uc001qkn.2_Silent_p.F351F|CACNA1C_uc001qko.2_Silent_p.F351F|CACNA1C_uc001qkp.2_Silent_p.F351F|CACNA1C_uc001qkr.2_Silent_p.F351F|CACNA1C_uc001qku.2_Silent_p.F351F|CACNA1C_uc001qkq.2_Silent_p.F351F|CACNA1C_uc001qks.2_Silent_p.F351F|CACNA1C_uc001qkt.2_Silent_p.F351F|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_Silent_p.F87F|CACNA1C_uc001qkj.1_Silent_p.F87F|CACNA1C_uc001qkk.1_Silent_p.F87F|CACNA1C_uc001qkm.1_Silent_p.F87F	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	351	I.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ACTTTGCCTTCGCCATGCTCA	0.617													85	133					0	0	1	0	0	
TEAD4	7004	broad.mit.edu	37	12	3149557	3149557	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:3149557G>A	uc010sej.1	+	13	1492	c.1215G>A	c.(1213-1215)GAG>GAA	p.E405E	TEAD4_uc010sek.1_Silent_p.E362E|TEAD4_uc001qln.2_Silent_p.E277E	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	406					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			ACACACAGGAGACCTTGCTGT	0.547													20	41					0	0	1	0	0	
DYRK4	8798	broad.mit.edu	37	12	4716511	4716511	+	Missense_Mutation	SNP	G	A	A	rs139849675		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:4716511G>A	uc001qmx.2	+	10	1133	c.973G>A	c.(973-975)GCC>ACC	p.A325T	DYRK4_uc009zeh.1_Missense_Mutation_p.A440T|DYRK4_uc001qmy.1_Missense_Mutation_p.A325T|DYRK4_uc001qmz.1_Missense_Mutation_p.A39T|DYRK4_uc001qna.1_Intron|DYRK4_uc010ser.1_Intron	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	325	Protein kinase.					Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			TCTGCCGCCAGCCGGCTTCAT	0.502													25	52					0	0	1	0	0	
AKAP3	10566	broad.mit.edu	37	12	4737890	4737890	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:4737890G>A	uc001qnb.3	-	4	407	c.178C>T	c.(178-180)CGG>TGG	p.R60W		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	60					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						GGTTTGAACCGAACATCTTGG	0.502													27	44					0	0	1	0	0	
GALNT8	26290	broad.mit.edu	37	12	4855352	4855352	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:4855352C>A	uc001qne.1	+	6	1193	c.1101C>A	c.(1099-1101)TTC>TTA	p.F367L		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	367	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						ACAGGCACTTCCTGGGAGAGA	0.532													24	84					4.72057e-08	4.99044e-08	1	1	0	
KCNA1	3736	broad.mit.edu	37	12	5021705	5021705	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:5021705C>T	uc001qnh.2	+	2	2266	c.1161C>T	c.(1159-1161)ATC>ATT	p.I387I		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	387	Helical; Name=Segment S6; (Potential).				synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GAGGCAAGATCGTGGGCTCCT	0.527													127	279					0	0	1	0	0	
KCNA5	3741	broad.mit.edu	37	12	5154543	5154543	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:5154543C>A	uc001qni.2	+	1	1459	c.1230C>A	c.(1228-1230)ATC>ATA	p.I410I		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	410	Helical; Voltage-sensor; Name=Segment S4; (Potential).					Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						TGTTCCGCATCTTCAAGCTCT	0.642													13	33					2.94398e-08	3.12196e-08	1	1	0	
VWF	7450	broad.mit.edu	37	12	6058967	6058967	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:6058967A>G	uc001qnn.1	-	51	8488	c.8238T>C	c.(8236-8238)GAT>GAC	p.D2746D	VWF_uc010set.1_3'UTR	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2746	CTCK.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	AGTAGTGGATATCCACCTCTA	0.527													33	76					0	0	1	0	0	
VWF	7450	broad.mit.edu	37	12	6132884	6132884	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:6132884C>T	uc001qnn.1	-	25	3542	c.3292G>A	c.(3292-3294)GCC>ACC	p.A1098T	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1098					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CAGAAGCAGGCGCAGTCCCCA	0.607													11	30					0	0	1	0	0	
VWF	7450	broad.mit.edu	37	12	6181527	6181527	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:6181527C>T	uc001qnn.1	-	9	1329	c.1079G>A	c.(1078-1080)GGC>GAC	p.G360D	VWF_uc010set.1_Missense_Mutation_p.G360D	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	360					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GAGGGAGGTGCCGGGAGGGTA	0.647													21	36					0	0	1	0	0	
CD9	928	broad.mit.edu	37	12	6334636	6334636	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:6334636C>T	uc001qnp.1	+	3	555	c.111C>T	c.(109-111)TTC>TTT	p.F37F	CD9_uc010seu.1_Silent_p.F37F|CD9_uc010sev.1_Silent_p.F37F|CD9_uc001qnq.1_Silent_p.F37F	NM_001769	NP_001760	P21926	CD9_HUMAN	CD9 antigen	37	Extracellular (Potential).				cell adhesion|cellular component movement|fusion of sperm to egg plasma membrane|paranodal junction assembly|platelet activation|platelet degranulation	integral to plasma membrane|platelet alpha granule membrane				ovary(1)	1						GGCTCCGATTCGACTCTCAGA	0.488													26	67					0	0	1	0	0	
CHD4	1108	broad.mit.edu	37	12	6692411	6692411	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:6692411C>A	uc001qpo.2	-	26	4177	c.4013G>T	c.(4012-4014)AGA>ATA	p.R1338I	CHD4_uc001qpn.2_Missense_Mutation_p.R1331I|CHD4_uc001qpp.2_Missense_Mutation_p.R1335I|uc001qpq.1_3'UTR|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1338					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TTTACGGATTCTTTTTCCTTT	0.552													81	149					8.87156e-34	1.09139e-33	1	1	0	
ACRBP	84519	broad.mit.edu	37	12	6749577	6749577	+	Missense_Mutation	SNP	C	T	T	rs150031699		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:6749577C>T	uc001qpu.1	-	7	1237	c.1189G>A	c.(1189-1191)GAC>AAC	p.D397N	LPAR5_uc010sff.1_5'Flank|ACRBP_uc001qpt.1_5'Flank|ACRBP_uc010sfg.1_Missense_Mutation_p.D364N	NM_032489	NP_115878	Q8NEB7	ACRBP_HUMAN	proacrosin binding protein sp32 precursor	397						acrosomal vesicle|extracellular region				central_nervous_system(1)	1						TGGGAGGTGTCGCATTGTTGC	0.617													12	30					0	0	1	0	0	
CD4	920	broad.mit.edu	37	12	6925323	6925323	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:6925323G>A	uc001qqv.1	+	6	954	c.709G>A	c.(709-711)GAG>AAG	p.E237K	CD4_uc009zez.1_3'UTR|CD4_uc009zfa.1_RNA|CD4_uc009zfb.1_RNA|CD4_uc010sfj.1_5'UTR|CD4_uc009zfc.1_Missense_Mutation_p.E58K|CD4_uc010sfk.1_5'UTR|CD4_uc010sfl.1_5'UTR|CD4_uc010sfm.1_5'UTR	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	237	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				GGGCAGTGGCGAGCTGTGGTG	0.537													49	86					0	0	1	0	0	
C12orf57	113246	broad.mit.edu	37	12	7053657	7053657	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:7053657T>C	uc001qrz.2	+	2	153	c.71T>C	c.(70-72)ATC>ACC	p.I24T	C12orf57_uc009zfj.1_Missense_Mutation_p.I48T|PTPN6_uc001qsa.1_5'Flank|PTPN6_uc010sfr.1_5'Flank	NM_138425	NP_612434	Q99622	C10_HUMAN	C10 protein	24											0						GCGGAGGTGATCCAGGCGTTC	0.652											OREG0021642	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	17					0	0	1	0	0	
CLSTN3	9746	broad.mit.edu	37	12	7295598	7295598	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:7295598C>T	uc001qsr.2	+	11	1952	c.1674C>T	c.(1672-1674)TTC>TTT	p.F558F	CLSTN3_uc001qss.2_Silent_p.F570F	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	558	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						ATAGGGATTTCGAGAGCCTGG	0.612													19	33					0	0	1	0	0	
ACSM4	341392	broad.mit.edu	37	12	7475867	7475867	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:7475867A>C	uc001qsx.1	+	8	1163	c.1163A>C	c.(1162-1164)AAA>ACA	p.K388T		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	388					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						CAAGAAATTAAACCAGGTTCA	0.383													8	11					0	0	1	0	0	
CD163L1	283316	broad.mit.edu	37	12	7556295	7556295	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:7556295C>G	uc001qsy.2	-	6	1270	c.1244G>C	c.(1243-1245)AGC>ACC	p.S415T	CD163L1_uc010sge.1_Missense_Mutation_p.S425T	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	415	SRCR 4.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						GCCAAAGACGCTGAACGGACA	0.463													62	133					0	0	1	0	0	
SLC2A14	144195	broad.mit.edu	37	12	7972091	7972091	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:7972091G>T	uc001qtk.2	-	14	1920	c.1127C>A	c.(1126-1128)TCT>TAT	p.S376Y	SLC2A14_uc001qtl.2_Missense_Mutation_p.S353Y|SLC2A14_uc001qtm.2_Missense_Mutation_p.S353Y|SLC2A14_uc010sgg.1_Missense_Mutation_p.S267Y|SLC2A14_uc001qtn.2_Missense_Mutation_p.S376Y|SLC2A14_uc001qto.2_Missense_Mutation_p.S11Y|SLC2A14_uc010sgh.1_Missense_Mutation_p.S391Y	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	376	Helical; Name=9; (Potential).			SL -> PC (in Ref. 2; AAQ63763).	cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		TAATAACAAAGAAACAGTCAT	0.448													42	80					1.00776e-21	1.1968e-21	1	1	0	
SLC2A3	6515	broad.mit.edu	37	12	8075568	8075568	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:8075568A>G	uc001qtr.2	-	9	1383	c.1121T>C	c.(1120-1122)GTA>GCA	p.V374A		NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	374	Helical; Name=10; (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		AAAGAAGGCTACAAAGACCAA	0.493													16	33					0	0	1	0	0	
FOXJ2	55810	broad.mit.edu	37	12	8200530	8200530	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:8200530T>C	uc001qtu.2	+	7	1955	c.870T>C	c.(868-870)TAT>TAC	p.Y290Y	FOXJ2_uc001qtt.1_Silent_p.Y290Y	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	290					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		ACTACATGTATcagcagcagc	0.428													19	28					0	0	1	0	0	
C3AR1	719	broad.mit.edu	37	12	8211843	8211843	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:8211843A>G	uc001qtv.1	-	2	1031	c.939T>C	c.(937-939)GGT>GGC	p.G313G		NM_004054	NP_004045	Q16581	C3AR_HUMAN	complement component 3a receptor 1	313	Extracellular (Potential).				blood circulation|chemotaxis|elevation of cytosolic calcium ion concentration|inflammatory response	integral to plasma membrane	C3a anaphylatoxin receptor activity|complement component C3a receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)	1				Kidney(36;0.0893)		AATCCTGGAAACCTTGTGGTA	0.468													31	85					0	0	1	0	0	
NECAP1	25977	broad.mit.edu	37	12	8248234	8248234	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:8248234G>A	uc001qtx.2	+	7	792	c.714G>A	c.(712-714)ACG>ACA	p.T238T	NECAP1_uc001qty.2_Silent_p.T96T	NM_015509	NP_056324	Q8NC96	NECP1_HUMAN	NECAP endocytosis associated 1	238					endocytosis|protein transport	clathrin coated vesicle membrane|plasma membrane				ovary(1)	1				Kidney(36;0.0915)		CTCCTGTCACGACACCAGCAC	0.388													41	82					0	0	1	0	0	
FAM90A1	55138	broad.mit.edu	37	12	8374624	8374624	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:8374624G>A	uc001qui.2	-	7	1748	c.1189C>T	c.(1189-1191)CGG>TGG	p.R397W	FAM90A1_uc001quh.2_Missense_Mutation_p.R397W	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	397							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TCCAGTCTCCGAAAGAGCACT	0.632													13	39					0	0	1	0	0	
LOC653113	653113	broad.mit.edu	37	12	8386974	8386974	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:8386974G>A	uc010sgk.1	-	4		c.482C>T				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						GCCAGCCTCCGCAGGACCCCG	0.592													20	44					0	0	1	0	0	
CLEC6A	93978	broad.mit.edu	37	12	8628798	8628798	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:8628798G>A	uc001qum.1	+	5	564	c.447G>A	c.(445-447)TGG>TGA	p.W149*		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	149	Extracellular (Potential).|C-type lectin.				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					ataataattggcaatggattg	0.119													33	79					0	0	1	0	0	
CLEC4E	26253	broad.mit.edu	37	12	8691820	8691820	+	Silent	SNP	A	G	G	rs150324510		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:8691820A>G	uc001quo.1	-	3	378	c.213T>C	c.(211-213)TAT>TAC	p.Y71Y		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	71	Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					TACCTGATCCATAATTGTAGC	0.383													50	89					0	0	1	0	0	
A2ML1	144568	broad.mit.edu	37	12	9008114	9008114	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:9008114C>T	uc001quz.3	+	23	2872	c.2774C>T	c.(2773-2775)GCA>GTA	p.A925V	A2ML1_uc001qva.1_Missense_Mutation_p.A505V|A2ML1_uc010sgm.1_Missense_Mutation_p.A425V	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	769						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GGAAAGGTGGCATCTGAATCT	0.443													28	65					0	0	1	0	0	
A2M	2	broad.mit.edu	37	12	9243800	9243800	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:9243800G>A	uc001qvk.1	-	19	2579	c.2466C>T	c.(2464-2466)ATC>ATT	p.I822I	A2M_uc009zgk.1_Silent_p.I672I	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	822					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	TCCTTACCCGGATGCATTTGG	0.428													31	65					0	0	1	0	0	
A2M	2	broad.mit.edu	37	12	9261990	9261990	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:9261990A>G	uc001qvk.1	-	7	798	c.685T>C	c.(685-687)TTT>CTT	p.F229L	A2M_uc009zgk.1_Missense_Mutation_p.F79L	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	229					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	TGTACTTCAAACTTGGGAAGA	0.373													8	23					0	0	1	0	0	
PZP	5858	broad.mit.edu	37	12	9303273	9303273	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:9303273C>A	uc001qvl.2	-	34	4380	c.4351G>T	c.(4351-4353)GCA>TCA	p.A1451S	PZP_uc009zgl.2_Missense_Mutation_p.A1237S	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TTAACAATTGCTGGCTTCAAG	0.398													31	53					3.73148e-12	4.12027e-12	1	1	0	
PZP	5858	broad.mit.edu	37	12	9318693	9318693	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:9318693C>T	uc001qvl.2	-	18	2242	c.2213G>A	c.(2212-2214)CGA>CAA	p.R738Q	PZP_uc009zgl.2_Missense_Mutation_p.R607Q|PZP_uc010sgo.1_RNA|PZP_uc009zgm.1_Missense_Mutation_p.R70Q	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						AAAATAGCTTCGCACCGTTTC	0.448													51	128					0	0	1	0	0	
LOC642846	642846	broad.mit.edu	37	12	9463814	9463814	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:9463814C>T	uc010sgp.1	+	21		c.2443C>T			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						TCTCCTCCTACGAGTACCTGC	0.622													27	33					0	0	1	0	0	
CLEC12A	160364	broad.mit.edu	37	12	10131996	10131996	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:10131996G>A	uc001qwr.3	+	3	440	c.252G>A	c.(250-252)GAG>GAA	p.E84E	CLEC12A_uc001qwq.2_Silent_p.E94E|CLEC12A_uc001qws.3_Silent_p.E51E|CLEC12A_uc001qwt.2_Silent_p.E13E	NM_138337	NP_612210	Q5QGZ9	CL12A_HUMAN	myeloid inhibitory C-type lectin-like receptor	84	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity|sugar binding			skin(1)	1						TCAGTGAAGAGCTCCAGAGAA	0.328													9	28					0	0	1	0	0	
CLEC1B	51266	broad.mit.edu	37	12	10145803	10145803	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:10145803T>C	uc001qwu.2	-	6	829	c.629A>G	c.(628-630)AAC>AGC	p.N210S	CLEC1B_uc009zhd.2_Missense_Mutation_p.N177S	NM_016509	NP_057593	Q9P126	CLC1B_HUMAN	C-type lectin domain family 1, member B isoform	210	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	protein binding|sugar binding|transmembrane receptor activity				0						ATAATGTTTGTTCTCACAGAA	0.393													78	142					0	0	1	0	0	
CLEC1B	51266	broad.mit.edu	37	12	10145850	10145850	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:10145850A>C	uc001qwu.2	-	6	782	c.582T>G	c.(580-582)AAT>AAG	p.N194K	CLEC1B_uc009zhd.2_Missense_Mutation_p.N161K	NM_016509	NP_057593	Q9P126	CLC1B_HUMAN	C-type lectin domain family 1, member B isoform	194	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	protein binding|sugar binding|transmembrane receptor activity				0						AATAAGCACAATTCATATTTC	0.373													37	86					0	0	1	0	0	
CLEC1A	51267	broad.mit.edu	37	12	10233922	10233922	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:10233922G>T	uc001qxb.2	-	3	389	c.305C>A	c.(304-306)TCT>TAT	p.S102Y	CLEC1A_uc009zhf.2_Missense_Mutation_p.S14Y|CLEC1A_uc001qxc.2_Missense_Mutation_p.S14Y|CLEC1A_uc001qxd.2_Missense_Mutation_p.S59Y|CLEC1A_uc010sgx.1_Intron	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	102	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						GACTTGAAGAGATTGCAACTC	0.423													35	77					5.8336e-16	6.67442e-16	1	1	0	
CLEC7A	64581	broad.mit.edu	37	12	10282621	10282621	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:10282621C>T	uc001qxg.2	-	1	248	c.61G>A	c.(61-63)GAC>AAC	p.D21N	CLEC7A_uc001qxe.3_RNA|CLEC7A_uc001qxf.2_Missense_Mutation_p.D21N|CLEC7A_uc001qxh.2_Missense_Mutation_p.D21N|CLEC7A_uc001qxi.2_Missense_Mutation_p.D21N|CLEC7A_uc001qxj.2_Missense_Mutation_p.D21N|CLEC7A_uc009zhg.1_RNA|CLEC7A_uc001qxk.1_RNA|CLEC7A_uc001qxl.1_Missense_Mutation_p.D21N|CLEC7A_uc010sgy.1_Missense_Mutation_p.D21N|CLEC7A_uc001qxm.1_Missense_Mutation_p.D21N|CLEC7A_uc001qxn.2_Missense_Mutation_p.D21N	NM_197947	NP_922938	Q9BXN2	CLC7A_HUMAN	dendritic cell-associated C-type lectin 1	21	Cytoplasmic (Potential).				carbohydrate mediated signaling|defense response to protozoan|inflammatory response|innate immune response|phagocytosis, recognition|T cell activation	cytoplasm|integral to membrane	metal ion binding|MHC protein binding|sugar binding			central_nervous_system(1)	1						CTTTGAGAGTCGAAGTGTAAT	0.358													8	35					0	0	1	0	0	
C12orf59	120939	broad.mit.edu	37	12	10339104	10339104	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:10339104A>C	uc001qxr.2	+	4	840	c.223A>C	c.(223-225)AAT>CAT	p.N75H	C12orf59_uc001qxq.2_Missense_Mutation_p.N55H			Q4KMG9	CL059_HUMAN	RecName: Full=Uncharacterized protein C12orf59; Flags: Precursor;	75						integral to membrane				ovary(1)	1						CCGCCAGCAAAATGGGGAAGA	0.567													34	60					0	0	1	0	0	
GABARAPL1	23710	broad.mit.edu	37	12	10374410	10374410	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:10374410C>A	uc001qxs.2	+	4	553	c.313C>A	c.(313-315)CTG>ATG	p.L105M	GABARAPL1_uc001qxt.2_RNA|GABARAPL1_uc001qxu.2_RNA	NM_031412	NP_113600	Q9H0R8	GBRL1_HUMAN	GABA(A) receptor-associated protein like 1	105						autophagic vacuole|endoplasmic reticulum|Golgi apparatus|membrane|microtubule	beta-tubulin binding|GABA receptor binding				0						AGACTATTTTCTGTATGTGGC	0.368													20	43					1.96895e-08	2.09068e-08	1	1	0	
TAS2R8	50836	broad.mit.edu	37	12	10958754	10958754	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:10958754G>T	uc010shh.1	-	1	826	c.826C>A	c.(826-828)CTC>ATC	p.L276I		NM_023918	NP_076407	Q9NYW2	TA2R8_HUMAN	taste receptor, type 2, member 8	276	Helical; Name=7; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity			ovary(2)	2						AAGGGGTAGAGAATTGCTGCA	0.333													20	46					4.96729e-08	5.24652e-08	1	1	0	
PRR4	11272	broad.mit.edu	37	12	10999769	10999769	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:10999769G>A	uc001qyz.3	-	3	337	c.298C>T	c.(298-300)CGT>TGT	p.R100C	PRR4_uc009zhp.2_Missense_Mutation_p.R113C|PRH1_uc001qzb.3_RNA|PRR4_uc001qza.3_Intron	NM_007244	NP_009175	Q16378	PROL4_HUMAN	proline rich 4 (lacrimal) isoform 2	100					visual perception	extracellular space					0						GAGAGTTGACGGTGTCCTCGT	0.557													70	142					0	0	1	0	0	
PRB2	653247	broad.mit.edu	37	12	11546911	11546911	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:11546911C>T	uc010shk.1	-	3	136	c.101G>A	c.(100-102)GGA>GAA	p.G34E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGATTTCCTGGAGAACA	0.483													51	98					0	0	1	0	0	
DUSP16	80824	broad.mit.edu	37	12	12630251	12630251	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:12630251C>T	uc001rao.1	-	7	2146	c.1514G>A	c.(1513-1515)CGA>CAA	p.R505Q	DUSP16_uc001ram.1_5'Flank|DUSP16_uc001ran.1_Missense_Mutation_p.R357Q	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	505					inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		GCTCCCACTTCGATGCAGTGG	0.592													28	75					0	0	1	0	0	
MIR614	693199	broad.mit.edu	37	12	13068773	13068773	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:13068773G>A	hsa-mir-614|MI0003627	+			c.11G>A			uc001rbb.3_RNA																	0						TCTAAGAAACGCAGTGGTCTC	0.348													26	32					0	0	1	0	0	
HTR7P1	93164	broad.mit.edu	37	12	13154678	13154678	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:13154678G>T	uc010shq.1	+	1		c.1303G>T			HEBP1_uc001rbd.2_5'Flank|HEBP1_uc001rbf.2_5'Flank|HTR7P1_uc001rbh.2_Intron	NR_002774				Homo sapiens 5-hydroxytryptamine (serotonin) receptor 7 pseudogene (HTR7P), non-coding RNA.												0						AAAGGGCCGAGAAAGTTGTGA	0.667													3	7					0.004672	0.00471866	1	1	0	
GSG1	83445	broad.mit.edu	37	12	13237933	13237933	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:13237933C>T	uc001rbn.2	-	7	1164	c.991G>A	c.(991-993)GAC>AAC	p.D331N	GSG1_uc001rbj.2_Missense_Mutation_p.D295N|GSG1_uc001rbk.2_3'UTR|GSG1_uc001rbl.2_Missense_Mutation_p.D267N|GSG1_uc001rbm.2_Missense_Mutation_p.D244N|GSG1_uc001rbo.2_3'UTR|GSG1_uc001rbp.2_Missense_Mutation_p.D308N|GSG1_uc001rbq.1_3'UTR	NM_001080555	NP_001074024	Q2KHT4	GSG1_HUMAN	germ cell associated 1 isoform 4	318						endoplasmic reticulum membrane|integral to membrane					0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		GAGTAGAAGTCGACTCCCTCA	0.547													2	1					0	0	1	0	0	
ATF7IP	55729	broad.mit.edu	37	12	14577784	14577784	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:14577784A>C	uc001rbw.2	+	2	1093	c.935A>C	c.(934-936)AAA>ACA	p.K312T	ATF7IP_uc010shs.1_Missense_Mutation_p.K312T|ATF7IP_uc001rbu.2_Missense_Mutation_p.K312T|ATF7IP_uc001rbv.1_Missense_Mutation_p.K312T|ATF7IP_uc001rbx.2_Missense_Mutation_p.K312T|ATF7IP_uc010sht.1_Missense_Mutation_p.K312T|ATF7IP_uc001rby.3_Missense_Mutation_p.K312T|ATF7IP_uc001rbz.1_Missense_Mutation_p.K312T|ATF7IP_uc001rca.2_Missense_Mutation_p.K312T|ATF7IP_uc001rcb.2_5'Flank	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	312					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						AGTAGCAATAAAGATGATGAT	0.323													39	58					0	0	1	0	0	
C12orf60	144608	broad.mit.edu	37	12	14976593	14976593	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:14976593G>T	uc001rcj.3	+	2	928	c.724G>T	c.(724-726)GCC>TCC	p.A242S		NM_175874	NP_787070	Q5U649	CL060_HUMAN	hypothetical protein LOC144608	242										ovary(1)|central_nervous_system(1)	2						GTTTAAGAAAGCCAGTGACAA	0.348													8	40					2.17888e-05	2.24492e-05	1	1	0	
ART4	420	broad.mit.edu	37	12	14995923	14995923	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:14995923C>T	uc001rcl.1	-	1	491	c.125G>A	c.(124-126)AGA>AAA	p.R42K	ART4_uc009zid.1_RNA|ART4_uc009zie.1_RNA|ART4_uc001rcm.1_Missense_Mutation_p.R42K	NM_021071	NP_066549	Q93070	NAR4_HUMAN	ADP-ribosyltransferase 4 precursor	42					arginine metabolic process|protein ADP-ribosylation	anchored to membrane|plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity				0						CTCTGTGGGTCTCTGCAGGCC	0.537													11	14					0	0	1	0	0	
ERP27	121506	broad.mit.edu	37	12	15073929	15073929	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:15073929G>A	uc001rco.2	-	4	408	c.387C>T	c.(385-387)GCC>GCT	p.A129A		NM_152321	NP_689534	Q96DN0	ERP27_HUMAN	endoplasmic reticulum protein 27 kDa precursor	129	Thioredoxin.					endoplasmic reticulum lumen				breast(1)	1						TCAATTTGGTGGCATCAATGC	0.398													33	63					0	0	1	0	0	
ERP27	121506	broad.mit.edu	37	12	15087795	15087795	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:15087795G>A	uc001rco.2	-	3	349	c.328C>T	c.(328-330)CGC>TGC	p.R110C		NM_152321	NP_689534	Q96DN0	ERP27_HUMAN	endoplasmic reticulum protein 27 kDa precursor	110	Thioredoxin.					endoplasmic reticulum lumen				breast(1)	1						CTTACCAGGCGAAAGAGGCAG	0.468													32	67					0	0	1	0	0	
ARHGDIB	397	broad.mit.edu	37	12	15103555	15103555	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:15103555G>A	uc001rcq.1	-	2	196	c.92C>T	c.(91-93)TCC>TTC	p.S31F	ARHGDIB_uc001rcp.1_5'Flank	NM_001175	NP_001166	P52566	GDIR2_HUMAN	Rho GDP dissociation inhibitor (GDI) beta	31					actin cytoskeleton organization|cellular component movement|immune response|multicellular organismal development|negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytoskeleton|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity				0						CTCTTTCAGGGACTTCTGTGG	0.463													37	89					0	0	1	0	0	
EPS8	2059	broad.mit.edu	37	12	15793747	15793747	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:15793747G>A	uc009zif.2	-	17	1805	c.1711C>T	c.(1711-1713)CGA>TGA	p.R571*	EPS8_uc001rdb.2_Nonsense_Mutation_p.R571*|EPS8_uc009zig.2_Nonsense_Mutation_p.R311*|EPS8_uc010shv.1_Nonsense_Mutation_p.R311*	NM_004447	NP_004438	Q12929	EPS8_HUMAN	epidermal growth factor receptor pathway	571	SH3.				cell proliferation|epidermal growth factor receptor signaling pathway		SH3/SH2 adaptor activity			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		all_epithelial(100;1.87e-05)|Breast(259;0.000286)|Hepatocellular(102;0.244)		BRCA - Breast invasive adenocarcinoma(232;4.29e-05)|GBM - Glioblastoma multiforme(207;0.0264)		CTTGCATTTCGAACTTTCCAC	0.393													42	73					0	0	1	0	0	
PIK3C2G	5288	broad.mit.edu	37	12	18552625	18552625	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:18552625T>G	uc001rdt.2	+	15	2152	c.2036T>G	c.(2035-2037)TTT>TGT	p.F679C	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.F720C|PIK3C2G_uc010sic.1_Missense_Mutation_p.F498C	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	679					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TATTTATGGTTTTATCGCTTC	0.373													27	57					0	0	1	0	0	
SLCO1B3	28234	broad.mit.edu	37	12	21033812	21033812	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:21033812T>C	uc001rek.2	+	11	1481	c.1355T>C	c.(1354-1356)GTA>GCA	p.V452A	SLCO1B3_uc001rel.2_Missense_Mutation_p.V452A|SLCO1B3_uc010sil.1_Missense_Mutation_p.V452A|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.V277A	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	452	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					GCATCTCATGTAGATGTACCA	0.274													40	82					0	0	1	0	0	
SLCO1B1	10599	broad.mit.edu	37	12	21355460	21355460	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:21355460T>C	uc001req.3	+	10	1275	c.1171T>C	c.(1171-1173)TTT>CTT	p.F391L		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	391	Helical; Name=8; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	AAGTGGAATGTTTTTAGGAGG	0.294													16	33					0	0	1	0	0	
SLCO1B1	10599	broad.mit.edu	37	12	21392082	21392082	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:21392082T>G	uc001req.3	+	15	2139	c.2035T>G	c.(2035-2037)TTT>GTT	p.F679V		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	679	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	AAATAAACATTTTGTCCCTTC	0.358													41	82					0	0	1	0	0	
PYROXD1	79912	broad.mit.edu	37	12	21602535	21602535	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:21602535G>A	uc001rew.2	+	4	451	c.324G>A	c.(322-324)AAG>AAA	p.K108K	PYROXD1_uc009ziq.2_5'UTR|PYROXD1_uc009zir.2_Intron	NM_024854	NP_079130	Q8WU10	PYRD1_HUMAN	pyridine nucleotide-disulphide oxidoreductase	108							oxidoreductase activity			ovary(1)	1						ACGTATATAAGAAACtctgtc	0.264													15	18					0	0	1	0	0	
LDHB	3945	broad.mit.edu	37	12	21807557	21807557	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:21807557C>T	uc001rfc.2	-	1	67	c.49G>A	c.(49-51)GCA>ACA	p.A17T	LDHB_uc001rfd.2_Missense_Mutation_p.A17T|LDHB_uc001rfe.2_Missense_Mutation_p.A17T	NM_002300	NP_002291	P07195	LDHB_HUMAN	L-lactate dehydrogenase B	17					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity			breast(2)|ovary(1)	3					NADH(DB00157)	GGAACTGTTGCCTCTTCTTCC	0.408													37	99					0	0	1	0	0	
CMAS	55907	broad.mit.edu	37	12	22214262	22214262	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:22214262T>A	uc001rfm.2	+	6	915	c.836T>A	c.(835-837)GTT>GAT	p.V279D	CMAS_uc001rfn.2_Intron	NM_018686	NP_061156	Q8NFW8	NEUA_HUMAN	cytidine monophospho-N-acetylneuraminic acid	279					lipopolysaccharide biosynthetic process	nucleus	N-acylneuraminate cytidylyltransferase activity			ovary(1)|pancreas(1)|skin(1)	3						AAACTTTTGGTTTGCAATATT	0.338													37	83					0	0	1	0	0	
KIAA0528	9847	broad.mit.edu	37	12	22676481	22676481	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:22676481C>T	uc001rfq.2	-	7	907	c.679G>A	c.(679-681)GAT>AAT	p.D227N	KIAA0528_uc010sir.1_Missense_Mutation_p.D29N|KIAA0528_uc010sis.1_Missense_Mutation_p.D227N|KIAA0528_uc010sit.1_Missense_Mutation_p.D227N|KIAA0528_uc010siu.1_Missense_Mutation_p.D227N|KIAA0528_uc001rfr.2_Missense_Mutation_p.D227N|KIAA0528_uc009ziy.1_Missense_Mutation_p.D227N	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	227							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CCCTCCAGATCGAAACACTGT	0.468													43	66					0	0	1	0	0	
SOX5	6660	broad.mit.edu	37	12	24048769	24048769	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:24048769C>T	uc001rfw.2	-	2	330	c.228G>A	c.(226-228)GAG>GAA	p.E76E	SOX5_uc001rfx.2_Silent_p.E63E|SOX5_uc001rfy.2_Silent_p.E63E|SOX5_uc010siv.1_Silent_p.E63E|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Intron|SOX5_uc001rga.2_Intron	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	76					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						GGCCACAAGTCTCTTGCGTCA	0.483													85	206					0	0	1	0	0	
BCAT1	586	broad.mit.edu	37	12	24995140	24995140	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:24995140A>C	uc001rgd.3	-	7	1135	c.693T>G	c.(691-693)CTT>CTG	p.L231L	BCAT1_uc001rgc.2_Silent_p.L230L|BCAT1_uc010six.1_Silent_p.L243L|BCAT1_uc010siy.1_Silent_p.L194L|BCAT1_uc001rge.3_Silent_p.L170L	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	231					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	ATTGGGCAAAAAGAGATGAGC	0.438													16	40					0	0	1	0	0	
C12orf77	196415	broad.mit.edu	37	12	25148944	25148944	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:25148944G>A	uc001rgf.2	-	3	409	c.204C>T	c.(202-204)AAC>AAT	p.N68N		NM_001101339	NP_001094809	C9JDV5	CL097_HUMAN	hypothetical protein LOC196415	68											0						GCGTCTGCACGTTCCCTTGTT	0.458													15	32					0	0	1	0	0	
CASC1	55259	broad.mit.edu	37	12	25264706	25264706	+	Missense_Mutation	SNP	C	A	A	rs141209520		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:25264706C>A	uc001rgl.2	-	13	1843	c.1761G>T	c.(1759-1761)AAG>AAT	p.K587N	CASC1_uc001rgk.2_Missense_Mutation_p.K593N|CASC1_uc001rgm.3_Missense_Mutation_p.K651N|CASC1_uc001rgj.2_Missense_Mutation_p.K547N|CASC1_uc010sje.1_Missense_Mutation_p.K528N|CASC1_uc010sjf.1_Missense_Mutation_p.K475N	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	587										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			TCATTCTTGCCTTATTGTTTA	0.264													15	32					1.02788e-11	1.1298e-11	1	1	0	
CASC1	55259	broad.mit.edu	37	12	25297436	25297436	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:25297436C>A	uc001rgl.2	-	8	929	c.847G>T	c.(847-849)GAT>TAT	p.D283Y	CASC1_uc001rgk.2_Missense_Mutation_p.D289Y|CASC1_uc001rgm.3_Missense_Mutation_p.D347Y|CASC1_uc001rgj.2_Missense_Mutation_p.D243Y|CASC1_uc010sje.1_Missense_Mutation_p.D224Y|CASC1_uc010sjf.1_Missense_Mutation_p.D171Y|CASC1_uc010sjg.1_Missense_Mutation_p.D283Y	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	283										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			TTAACATCATCTTTGACAAGC	0.403													55	108					6.9144e-35	8.52411e-35	1	1	0	
KRAS	3845	broad.mit.edu	37	12	25378562	25378562	+	Missense_Mutation	SNP	C	T	T	rs121913527		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:25378562C>T	uc001rgp.1	-	4	617	c.436G>A	c.(436-438)GCA>ACA	p.A146T	KRAS_uc001rgq.1_Missense_Mutation_p.A146T	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	146			A -> T (in a colorectal cancer sample; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.A146T(46)|p.A146V(12)|p.A146P(3)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CTTGTCTTTGCTGATGTTTCA	0.323	A146T(LS1034_LARGE_INTESTINE)|A146T(AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|A146T(NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			29	71					0	0	1	0	0	
BHLHE41	79365	broad.mit.edu	37	12	26276620	26276620	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:26276620T>G	uc001rhb.2	-	4	580	c.289A>C	c.(289-291)AAA>CAA	p.K97Q		NM_030762	NP_110389	Q9C0J9	BHE41_HUMAN	basic helix-loop-helix domain containing, class	97	Helix-loop-helix motif.				cell differentiation|cell proliferation|organ morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GTTAAAGCTTTTAAGTGTTTC	0.443											OREG0021711	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	50	94					0	0	1	0	0	
ITPR2	3709	broad.mit.edu	37	12	26596550	26596550	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:26596550G>A	uc001rhg.2	-	46	6793	c.6376C>T	c.(6376-6378)CTC>TTC	p.L2126F	ITPR2_uc009zjg.1_Missense_Mutation_p.L277F	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	2126	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					CCTGGTTTGAGCATCTGCTGC	0.408													20	39					0	0	1	0	0	
ITPR2	3709	broad.mit.edu	37	12	26752221	26752221	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:26752221C>T	uc001rhg.2	-	30	4276	c.3859G>A	c.(3859-3861)GAA>AAA	p.E1287K		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1287	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					TCGCTAATTTCGTTGCACAGA	0.438													59	139					0	0	1	0	0	
ITPR2	3709	broad.mit.edu	37	12	26775334	26775334	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:26775334C>A	uc001rhg.2	-	25	3544	c.3127G>T	c.(3127-3129)GAA>TAA	p.E1043*		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1043	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					GGATTTTTTTCTTTTCTATAA	0.373													9	25					0.00621372	0.0062719	1	1	0	
ITPR2	3709	broad.mit.edu	37	12	26811002	26811002	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:26811002C>A	uc001rhg.2	-	17	2365	c.1948G>T	c.(1948-1950)GAA>TAA	p.E650*		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	650	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					CAGATGAGTTCTTGAGTTACA	0.343													20	47					2.39187e-15	2.72483e-15	1	1	0	
C12orf11	55726	broad.mit.edu	37	12	27064188	27064188	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:27064188G>A	uc001rhk.3	-	15	2405	c.1868C>T	c.(1867-1869)TCG>TTG	p.S623L	C12orf11_uc001rhj.3_Missense_Mutation_p.S191L|C12orf11_uc010sjk.1_Missense_Mutation_p.S522L	NM_018164	NP_060634	Q9NVM9	M89BB_HUMAN	hypothetical protein LOC55726	623					cell division|mitosis|regulation of mitotic cell cycle		protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	Colorectal(261;0.0847)					GGAATCAGGCGAATCTTTTAT	0.363													40	85					0	0	1	0	0	
ARNTL2	56938	broad.mit.edu	37	12	27521247	27521247	+	Silent	SNP	C	T	T	rs140915764	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:27521247C>T	uc001rht.1	+	2	102	c.84C>T	c.(82-84)CGC>CGT	p.R28R	ARNTL2_uc001rhw.2_Silent_p.R39R|ARNTL2_uc010sjp.1_Silent_p.R39R|ARNTL2_uc001rhu.1_Silent_p.R28R|ARNTL2_uc009zji.1_Silent_p.R28R|ARNTL2_uc001rhv.1_Silent_p.R28R	NM_020183	NP_064568	Q8WYA1	BMAL2_HUMAN	aryl hydrocarbon receptor nuclear	28					circadian rhythm|entrainment of circadian clock|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|skin(1)	2	Colorectal(261;0.0847)|Lung SC(9;0.184)					TTTCCAGCCGCGTGAGTCCAG	0.463													26	48					0	0	1	0	0	
ARNTL2	56938	broad.mit.edu	37	12	27533205	27533205	+	Missense_Mutation	SNP	C	T	T	rs140062821		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:27533205C>T	uc001rht.1	+	5	370	c.352C>T	c.(352-354)CGG>TGG	p.R118W	ARNTL2_uc001rhw.2_Missense_Mutation_p.R81W|ARNTL2_uc010sjp.1_Missense_Mutation_p.R81W|ARNTL2_uc001rhu.1_Missense_Mutation_p.R104W|ARNTL2_uc009zji.1_Missense_Mutation_p.R84W|ARNTL2_uc001rhv.1_Missense_Mutation_p.R70W	NM_020183	NP_064568	Q8WYA1	BMAL2_HUMAN	aryl hydrocarbon receptor nuclear	118	Basic motif.				circadian rhythm|entrainment of circadian clock|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|skin(1)	2	Colorectal(261;0.0847)|Lung SC(9;0.184)					AACTGAAAAGCGGAGGAGAGA	0.448													27	58					0	0	1	0	0	
PPFIBP1	8496	broad.mit.edu	37	12	27813821	27813821	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:27813821C>T	uc001ric.1	+	11	1286	c.909C>T	c.(907-909)ATC>ATT	p.I303I	PPFIBP1_uc010sjr.1_Silent_p.I131I|PPFIBP1_uc001rib.1_Silent_p.I283I|PPFIBP1_uc001ria.2_Silent_p.I272I|PPFIBP1_uc001rid.1_Silent_p.I150I	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	303	Potential.				cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					TTTCAGACATCGAAGTACAAA	0.328													20	35					0	0	1	0	0	
PTHLH	5744	broad.mit.edu	37	12	28116612	28116612	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:28116612C>T	uc001rik.2	-	3	496	c.193G>A	c.(193-195)GCA>ACA	p.A65T	PTHLH_uc001ril.2_Missense_Mutation_p.A65T|PTHLH_uc001rim.2_Missense_Mutation_p.A65T|PTHLH_uc001rin.2_Missense_Mutation_p.A65T	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	65	Important for receptor binding.				activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					TGGATTTCTGCGATCAGATGG	0.507													60	145					0	0	1	0	0	
IPO8	10526	broad.mit.edu	37	12	30837302	30837302	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:30837302C>T	uc001rjd.2	-	3	426	c.256G>A	c.(256-258)GAA>AAA	p.E86K		NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	86	Importin N-terminal.				intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					CGATCGTTTTCGTGAATGTTG	0.413													55	107					0	0	1	0	0	
CAPRIN2	65981	broad.mit.edu	37	12	30869579	30869579	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:30869579C>T	uc001rji.1	-	14	3078	c.2327G>A	c.(2326-2328)CGA>CAA	p.R776Q	CAPRIN2_uc001rjf.1_Missense_Mutation_p.R573Q|CAPRIN2_uc001rjg.1_Missense_Mutation_p.R443Q|CAPRIN2_uc001rjh.1_Missense_Mutation_p.R727Q|CAPRIN2_uc001rjj.1_Missense_Mutation_p.R443Q|CAPRIN2_uc001rjk.3_Missense_Mutation_p.R776Q|CAPRIN2_uc001rjl.3_Missense_Mutation_p.R741Q|CAPRIN2_uc001rjm.1_Missense_Mutation_p.R408Q	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	776					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					TTGTTCTTTTCGTGGAGGCAG	0.418													64	142					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	12	31278489	31278489	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:31278489C>A	uc010sjy.1	-	27	3500	c.3500G>T	c.(3499-3501)AGG>ATG	p.R1167M						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		CTTGGGTTTCCTTTCTCTTTC	0.403													12	13					2.80697e-09	3.01096e-09	1	1	0	
Unknown	0	broad.mit.edu	37	12	31291185	31291185	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:31291185T>G	uc010sjy.1	-	15	1977	c.1977A>C	c.(1975-1977)AAA>AAC	p.K659N						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		TGGTAAAGACTTTGAGACCCA	0.343													14	28					0	0	1	0	0	
AMN1	196394	broad.mit.edu	37	12	31850304	31850304	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:31850304C>A	uc001rkq.3	-	5	748	c.582G>T	c.(580-582)AAG>AAT	p.K194N	AMN1_uc001rko.3_Missense_Mutation_p.K176N|AMN1_uc010skc.1_Missense_Mutation_p.K176N|AMN1_uc001rkp.3_Missense_Mutation_p.K176N|AMN1_uc009zjs.2_RNA|AMN1_uc009zjt.1_RNA	NM_001113402	NP_001106873	Q8IY45	AMN1_HUMAN	antagonist of mitotic exit network 1 homolog	194											0	all_cancers(9;7.41e-12)|all_epithelial(9;1.18e-11)|all_lung(12;1.14e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.162)		OV - Ovarian serous cystadenocarcinoma(6;0.0014)			CCTCTAATTTCTTCGCACAAG	0.338													26	55					2.50493e-22	2.98478e-22	1	1	0	
FGD4	121512	broad.mit.edu	37	12	32735043	32735043	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:32735043A>C	uc001rkz.2	+	4	719	c.242A>C	c.(241-243)AAG>ACG	p.K81T	FGD4_uc001rlc.2_Missense_Mutation_p.K166T|FGD4_uc001rky.2_5'UTR|FGD4_uc001rla.2_5'UTR|FGD4_uc010ske.1_Missense_Mutation_p.K193T|FGD4_uc001rlb.1_RNA|FGD4_uc001rkx.3_Missense_Mutation_p.K81T	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	81	Actin filament-binding (By similarity).				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					GATACAGATAAGACTCAGGGT	0.498													55	66					0	0	1	0	0	
SYT10	341359	broad.mit.edu	37	12	33559799	33559799	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:33559799A>C	uc001rll.1	-	3	1299	c.1002T>G	c.(1000-1002)ATT>ATG	p.I334M	SYT10_uc009zju.1_Missense_Mutation_p.I144M	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	334	Cytoplasmic (Potential).|C2 1.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					AATTATCAAGAATCACTTCCC	0.363													34	70					0	0	1	0	0	
KIF21A	55605	broad.mit.edu	37	12	39703566	39703566	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:39703566G>A	uc001rly.2	-	33	4245	c.4099C>T	c.(4099-4101)CGT>TGT	p.R1367C	KIF21A_uc001rlv.2_Missense_Mutation_p.R312C|KIF21A_uc001rlw.2_Missense_Mutation_p.R637C|KIF21A_uc001rlx.2_Missense_Mutation_p.R1354C|KIF21A_uc001rlz.2_Missense_Mutation_p.R1314C|KIF21A_uc010skl.1_Missense_Mutation_p.R1330C|KIF21A_uc001rlt.2_5'UTR|KIF21A_uc001rlu.2_5'UTR	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	1367	WD 1.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				TTACAAGTACGATCTAAAACA	0.323													12	21					0	0	1	0	0	
ABCD2	225	broad.mit.edu	37	12	39998622	39998622	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:39998622G>A	uc001rmb.2	-	4	1773	c.1347C>T	c.(1345-1347)AGC>AGT	p.S449S		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	449					fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						TCTTGCTATGGCTTTCAGATT	0.353													35	91					0	0	1	0	0	
C12orf40	283461	broad.mit.edu	37	12	40076662	40076662	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:40076662G>A	uc001rmc.2	+	8	1103	c.936G>A	c.(934-936)GAG>GAA	p.E312E	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	312										ovary(6)	6						ACATAGATGAGCAAAGGATAA	0.328													29	68					0	0	1	0	0	
LRRK2	120892	broad.mit.edu	37	12	40645114	40645114	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:40645114T>C	uc001rmg.3	+	9	1160	c.1039T>C	c.(1039-1041)TTG>CTG	p.L347L	LRRK2_uc001rmh.1_5'Flank	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	347	Potential.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				AGAAGATAAATTGTTTTGGCT	0.323											OREG0003829	type=REGULATORY REGION|Gene=LRRK2|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	16	21					0	0	1	0	0	
LRRK2	120892	broad.mit.edu	37	12	40681202	40681202	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:40681202T>C	uc001rmg.3	+	20	2671	c.2550T>C	c.(2548-2550)AGT>AGC	p.S850S	LRRK2_uc001rmh.1_Silent_p.S472S	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	850					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				AGATGAAAAGTGCTGTGGAAG	0.373													33	33					0	0	1	0	0	
LRRK2	120892	broad.mit.edu	37	12	40715849	40715849	+	Missense_Mutation	SNP	G	A	A	rs145364431		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:40715849G>A	uc001rmg.3	+	36	5304	c.5183G>A	c.(5182-5184)CGC>CAC	p.R1728H	LRRK2_uc009zjw.2_Missense_Mutation_p.R566H|LRRK2_uc001rmi.2_Missense_Mutation_p.R561H	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1728			R -> L (in PARK8).|R -> H (in PARK8).		activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				CGAGCACTTCGCCCAAACAGA	0.378													21	36					0	0	1	0	0	
CNTN1	1272	broad.mit.edu	37	12	41316077	41316077	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:41316077G>A	uc001rmm.1	+	5	360	c.247G>A	c.(247-249)GAC>AAC	p.D83N	CNTN1_uc009zjy.1_Missense_Mutation_p.D83N|CNTN1_uc001rmn.1_Missense_Mutation_p.D72N|CNTN1_uc001rmo.2_Missense_Mutation_p.D83N	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	83	Ig-like C2-type 1.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GAATAATGGGGACGTTGATCT	0.388													27	57					0	0	1	0	0	
CNTN1	1272	broad.mit.edu	37	12	41327516	41327516	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:41327516G>A	uc001rmm.1	+	9	934	c.821G>A	c.(820-822)CGA>CAA	p.R274Q	CNTN1_uc009zjy.1_Missense_Mutation_p.R274Q|CNTN1_uc001rmn.1_Missense_Mutation_p.R263Q|CNTN1_uc001rmo.2_Missense_Mutation_p.R274Q	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	274	Ig-like C2-type 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CCGGATATCCGATGGCGGAAG	0.373													34	84					0	0	1	0	0	
PDZRN4	29951	broad.mit.edu	37	12	41967456	41967456	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:41967456C>T	uc010skn.1	+	10	2346	c.2278C>T	c.(2278-2280)CGC>TGC	p.R760C	PDZRN4_uc001rmq.3_Missense_Mutation_p.R701C|PDZRN4_uc009zjz.2_Missense_Mutation_p.R699C|PDZRN4_uc001rmr.2_Missense_Mutation_p.R586C	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	959	Poly-Arg.						ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				GCAGCGCCGTCGCCGTGAGTT	0.537													22	53					0	0	1	0	0	
GXYLT1	283464	broad.mit.edu	37	12	42512847	42512847	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:42512847G>A	uc001rms.3	-	3	666	c.441C>T	c.(439-441)TTC>TTT	p.F147F	GXYLT1_uc001rmt.3_Silent_p.F116F	NM_173601	NP_775872	Q4G148	GXLT1_HUMAN	glycosyltransferase 8 domain containing 3	147	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						CAAAAATATGGAATTGAAGAG	0.348													19	56					0	0	1	0	0	
PPHLN1	51535	broad.mit.edu	37	12	42836453	42836453	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:42836453A>G	uc001rng.1	+	11	1140	c.1035A>G	c.(1033-1035)GGA>GGG	p.G345G	PPHLN1_uc010skr.1_Silent_p.G290G|PPHLN1_uc010sks.1_Silent_p.G271G|PPHLN1_uc010skt.1_Silent_p.G225G|PPHLN1_uc001rni.1_Silent_p.G290G|PPHLN1_uc001rnh.1_RNA|PPHLN1_uc010sku.1_Intron	NM_016488	NP_057572	Q8NEY8	PPHLN_HUMAN	periphilin 1 isoform 1	345					keratinization	cytoplasm|nucleus				ovary(1)|breast(1)	2	all_cancers(12;0.00049)|Breast(8;0.165)	Lung NSC(34;0.123)		GBM - Glioblastoma multiforme(48;0.0875)		agtctgcaggacagacttggc	0.01													72	177					0	0	1	0	0	
PRICKLE1	144165	broad.mit.edu	37	12	42854435	42854435	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:42854435G>A	uc010skv.1	-	8	1959	c.1672C>T	c.(1672-1674)CCA>TCA	p.P558S	PRICKLE1_uc001rnl.2_Missense_Mutation_p.P558S|PRICKLE1_uc010skw.1_Missense_Mutation_p.P558S|PRICKLE1_uc001rnm.2_Missense_Mutation_p.P558S|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	558					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		TACAATGATGGCCTTGGCTTG	0.418													7	96					0	0	1	0	0	
ADAMTS20	80070	broad.mit.edu	37	12	43771280	43771280	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:43771280C>T	uc010skx.1	-	32	4883	c.4883G>A	c.(4882-4884)CGA>CAA	p.R1628Q		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1628	TSP type-1 14.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AGGCCGAAGTCGATGGAGCTT	0.408													9	33					0	0	1	0	0	
ADAMTS20	80070	broad.mit.edu	37	12	43777440	43777440	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:43777440G>T	uc010skx.1	-	31	4718	c.4718C>A	c.(4717-4719)TCT>TAT	p.S1573Y		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1573	TSP type-1 13.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TATGGTTGAAGAATTATAGAC	0.373													15	25					4.93089e-13	5.49801e-13	1	1	0	
ADAMTS20	80070	broad.mit.edu	37	12	43840416	43840416	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:43840416A>C	uc010skx.1	-	15	2179	c.2179T>G	c.(2179-2181)TTC>GTC	p.F727V		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	727	Spacer.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GAACTGTTGAAGACACCTGTT	0.383													15	28					0	0	1	0	0	
ADAMTS20	80070	broad.mit.edu	37	12	43847773	43847773	+	Missense_Mutation	SNP	C	T	T	rs147849669		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:43847773C>T	uc010skx.1	-	12	1697	c.1697G>A	c.(1696-1698)AGT>AAT	p.S566N		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	566	TSP type-1 1.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TGAACAAGAACTGTAAGGTTC	0.403													6	26					0	0	1	0	0	
NELL2	4753	broad.mit.edu	37	12	44913847	44913847	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:44913847G>A	uc001rog.2	-	19	2936	c.2341C>T	c.(2341-2343)CGC>TGC	p.R781C	NELL2_uc001rof.3_Missense_Mutation_p.R780C|NELL2_uc001roh.2_Missense_Mutation_p.R781C|NELL2_uc009zkd.2_Missense_Mutation_p.R733C|NELL2_uc010skz.1_Missense_Mutation_p.R831C|NELL2_uc010sla.1_Missense_Mutation_p.R804C	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	781	VWFC 5.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CCGGTGAAGCGAACCACATTC	0.502													25	51					0	0	1	0	0	
NELL2	4753	broad.mit.edu	37	12	44915858	44915858	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:44915858G>A	uc001rog.2	-	18	2695	c.2100C>T	c.(2098-2100)TGC>TGT	p.C700C	NELL2_uc001rof.3_Silent_p.C699C|NELL2_uc001roh.2_Silent_p.C700C|NELL2_uc009zkd.2_Silent_p.C652C|NELL2_uc010skz.1_Silent_p.C750C|NELL2_uc010sla.1_Silent_p.C723C	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	700	VWFC 4.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		TTTGATGGAGGCACTGACTAC	0.458													23	55					0	0	1	0	0	
NELL2	4753	broad.mit.edu	37	12	44917221	44917221	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:44917221G>T	uc001rog.2	-	17	2446	c.1851C>A	c.(1849-1851)ACC>ACA	p.T617T	NELL2_uc001rof.3_Silent_p.T616T|NELL2_uc001roh.2_Silent_p.T617T|NELL2_uc009zkd.2_Silent_p.T569T|NELL2_uc010skz.1_Silent_p.T667T|NELL2_uc010sla.1_Silent_p.T640T|NELL2_uc001roi.1_Silent_p.T617T	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	617	EGF-like 6; calcium-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		TGAAGCAAATGGTATCATTGG	0.433													37	80					1.60099e-16	1.84126e-16	1	1	0	
NELL2	4753	broad.mit.edu	37	12	45173782	45173782	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:45173782C>T	uc001rog.2	-	4	954	c.359G>A	c.(358-360)GGC>GAC	p.G120D	NELL2_uc001rof.3_Missense_Mutation_p.G119D|NELL2_uc001roh.2_Missense_Mutation_p.G120D|NELL2_uc009zkd.2_Missense_Mutation_p.G119D|NELL2_uc010skz.1_Missense_Mutation_p.G170D|NELL2_uc010sla.1_Missense_Mutation_p.G143D|NELL2_uc001roi.1_Missense_Mutation_p.G120D|NELL2_uc010slb.1_Missense_Mutation_p.G119D|NELL2_uc001roj.2_Missense_Mutation_p.G120D	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	120	TSP N-terminal.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		ATTCCGATGGCCACTACTTTC	0.423													38	88					0	0	1	0	0	
RACGAP1P	83956	broad.mit.edu	37	12	45458108	45458108	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:45458108C>A	uc001rol.2	-	1		c.1087G>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CCTCTCCAATCTTGACAGGTG	0.493													17	27					3.41278e-10	3.69662e-10	1	1	0	
RACGAP1P	83956	broad.mit.edu	37	12	45459056	45459056	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:45459056C>T	uc001rol.2	-	1		c.139G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						AATTGGAGTTCGTTTCCTTCC	0.443													10	27					0	0	1	0	0	
RACGAP1P	83956	broad.mit.edu	37	12	45459144	45459144	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:45459144T>C	uc001rol.2	-	1		c.51A>G				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TCTTTTTCAGTCAGCCTGGCC	0.517													14	21					0	0	1	0	0	
ANO6	196527	broad.mit.edu	37	12	45740823	45740823	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:45740823G>A	uc001roo.2	+	4	633	c.298G>A	c.(298-300)GAA>AAA	p.E100K	ANO6_uc010sld.1_Missense_Mutation_p.E100K|ANO6_uc010sle.1_Missense_Mutation_p.E100K|ANO6_uc010slf.1_Missense_Mutation_p.E121K|ANO6_uc010slg.1_Missense_Mutation_p.E82K	NM_001025356	NP_001020527	Q4KMQ2	ANO6_HUMAN	anoctamin 6 isoform a	100	Cytoplasmic (Potential).				activation of blood coagulation via clotting cascade|phosphatidylserine exposure on blood platelet	chloride channel complex|plasma membrane	chloride channel activity			ovary(1)|kidney(1)	2						ACAAGCATACGAATCTAACCT	0.393													19	35					0	0	1	0	0	
SFRS2IP	9169	broad.mit.edu	37	12	46320292	46320292	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:46320292A>G	uc001rox.2	-	11	3479	c.3192T>C	c.(3190-3192)GGT>GGC	p.G1064G	SFRS2IP_uc001row.2_Silent_p.G749G|SFRS2IP_uc001roy.1_Silent_p.G1138G	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	1064					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		CCCAACCAGAACCAAAGTTTT	0.413													32	68					0	0	1	0	0	
SFRS2IP	9169	broad.mit.edu	37	12	46320408	46320408	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:46320408C>A	uc001rox.2	-	11	3363	c.3076G>T	c.(3076-3078)GAA>TAA	p.E1026*	SFRS2IP_uc001row.2_Nonsense_Mutation_p.E711*|SFRS2IP_uc001roy.1_Nonsense_Mutation_p.E1100*	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	1026					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		TTTATTTTTTCTGTTATCCAA	0.338													70	171					2.26907e-38	2.80873e-38	1	1	0	
SFRS2IP	9169	broad.mit.edu	37	12	46326965	46326965	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:46326965C>A	uc001rox.2	-	9	970	c.683G>T	c.(682-684)AGA>ATA	p.R228I	SFRS2IP_uc001roy.1_Missense_Mutation_p.R302I	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	228					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		CAGTTCATGTCTCTTCTGCCT	0.323													21	57					1.04121e-07	1.09748e-07	1	1	0	
SLC38A4	55089	broad.mit.edu	37	12	47178396	47178396	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:47178396A>G	uc001rpi.2	-	7	821	c.422T>C	c.(421-423)TTA>TCA	p.L141S	SLC38A4_uc001rpj.2_Missense_Mutation_p.L141S|SLC38A4_uc009zkl.2_Missense_Mutation_p.L141S	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	141	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CTTTTCTCCTAATTTTTCATA	0.333													33	55					0	0	1	0	0	
FAM113B	91523	broad.mit.edu	37	12	47629778	47629778	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:47629778C>T	uc001rpn.2	+	4	1663	c.932C>T	c.(931-933)CCG>CTG	p.P311L	FAM113B_uc001rpq.2_Missense_Mutation_p.P311L	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	311	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					cagcgcttgccgctgctcccg	0.249													27	52					0	0	1	0	0	
RPAP3	79657	broad.mit.edu	37	12	48096524	48096524	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:48096524C>A	uc001rpr.2	-	2	216	c.100G>T	c.(100-102)GAC>TAC	p.D34Y	RPAP3_uc010slk.1_Intron|RPAP3_uc001rps.2_Missense_Mutation_p.D34Y	NM_024604	NP_078880	Q9H6T3	RPAP3_HUMAN	RNA polymerase II associated protein 3 isoform	34	TPR 1.						binding			ovary(1)	1	Lung SC(27;0.192)					TGTTTAATGTCTTTTTCCCAG	0.308													17	35					6.94344e-10	7.49515e-10	1	1	0	
COL2A1	1280	broad.mit.edu	37	12	48380929	48380929	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:48380929A>C	uc001rqu.2	-	21	1478	c.1297T>G	c.(1297-1299)TTC>GTC	p.F433V	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.F364V	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	433	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GGCCCAGGGAAGCCAGGAGCA	0.642													29	42					0	0	1	0	0	
OR8S1	341568	broad.mit.edu	37	12	48919915	48919915	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:48919915C>A	uc010slu.1	+	1	501	c.501C>A	c.(499-501)GTC>GTA	p.V167V		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TAAACATGGTCTTTTGTGAAG	0.498													27	90					7.92952e-12	8.72397e-12	1	1	0	
CCNT1	904	broad.mit.edu	37	12	49087086	49087086	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:49087086C>T	uc001rse.1	-	9	2234	c.1911G>A	c.(1909-1911)TCG>TCA	p.S637S	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Silent_p.S352S	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	637					cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						TATCCAGTTTCGAATGAGGGA	0.512													27	54					0	0	1	0	0	
CCNT1	904	broad.mit.edu	37	12	49099624	49099624	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:49099624T>G	uc001rse.1	-	3	622	c.299A>C	c.(298-300)AAA>ACA	p.K100T	CCNT1_uc009zkz.1_5'UTR	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	100					cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						ATGTTCCAATTTTTTGGGCTG	0.388													30	48					0	0	1	0	0	
CCDC65	85478	broad.mit.edu	37	12	49298822	49298822	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:49298822G>T	uc001rso.2	+	2	453	c.226G>T	c.(226-228)GAA>TAA	p.E76*		NM_033124	NP_149115	Q8IXS2	CCD65_HUMAN	coiled-coil domain containing 65	76										ovary(1)|skin(1)	2						CAAGACCAGAGAACTTCATAA	0.458													36	76					2.09667e-21	2.48674e-21	1	1	0	
LMBR1L	55716	broad.mit.edu	37	12	49494202	49494202	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:49494202G>A	uc001rth.3	-	15	1551	c.1209C>T	c.(1207-1209)AGC>AGT	p.S403S	LMBR1L_uc001rtg.3_Silent_p.S398S|LMBR1L_uc001rti.3_Silent_p.S383S	NM_018113	NP_060583	Q6UX01	LMBRL_HUMAN	lipocalin-interacting membrane receptor	403	Helical; (Potential).				endocytosis	integral to membrane|plasma membrane	receptor activity			pancreas(1)	1						GAAGTGCTGAGCTTAGGACCA	0.428													16	147					0	0	1	0	0	
MCRS1	10445	broad.mit.edu	37	12	49959911	49959911	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:49959911C>T	uc001ruk.1	-	3	289	c.98G>A	c.(97-99)CGA>CAA	p.R33Q	MCRS1_uc001rui.1_Missense_Mutation_p.R46Q|MCRS1_uc001ruj.1_Missense_Mutation_p.R20Q|MCRS1_uc001rul.1_Missense_Mutation_p.R33Q|MCRS1_uc009zlj.1_Intron|MCRS1_uc001rum.1_Missense_Mutation_p.R20Q|MCRS1_uc001run.1_Missense_Mutation_p.R33Q	NM_006337	NP_006328	Q96EZ8	MCRS1_HUMAN	microspherule protein 1 isoform 1	33	Ser-rich.				DNA recombination|DNA repair|protein modification process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex|MLL1 complex|nucleolus	protein binding			large_intestine(1)	1						GGAGGAGGCTCGCTTCTGCCC	0.582													44	70					0	0	1	0	0	
PRPF40B	25766	broad.mit.edu	37	12	50028234	50028234	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:50028234A>G	uc001rur.1	+	10	930	c.866A>G	c.(865-867)GAC>GGC	p.D289G	PRPF40B_uc001rup.1_Missense_Mutation_p.D311G|PRPF40B_uc001ruq.1_Missense_Mutation_p.D283G|PRPF40B_uc001rus.1_Missense_Mutation_p.D232G	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	289	FF 1.				mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						CTGCTGAGGGACAAGGTGCTG	0.612													39	58					0	0	1	0	0	
NCKAP5L	57701	broad.mit.edu	37	12	50196943	50196943	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:50196943C>A	uc009zlk.2	-	4	331	c.129G>T	c.(127-129)GAG>GAT	p.E43D		NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	39	Potential.									central_nervous_system(1)	1						GTGCCGAGTTCTCTGCCTGCA	0.572													17	46					1.01871e-10	1.10886e-10	1	1	0	
AQP5	362	broad.mit.edu	37	12	50357924	50357924	+	Missense_Mutation	SNP	C	T	T	rs117761535	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:50357924C>T	uc001rvo.2	+	3	1100	c.578C>T	c.(577-579)GCG>GTG	p.A193V		NM_001651	NP_001642	P55064	AQP5_HUMAN	aquaporin 5	193	Extracellular (Potential).				carbon dioxide transport|excretion|odontogenesis|pancreatic juice secretion	apical plasma membrane|integral to plasma membrane	protein binding|water channel activity				0						TTTGGCCCTGCGGTGGTCATG	0.612													23	50					0	0	1	0	0	
LARP4	113251	broad.mit.edu	37	12	50860866	50860866	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:50860866G>T	uc001rwp.1	+	13	1652	c.1508G>T	c.(1507-1509)AGG>ATG	p.R503M	LARP4_uc001rwo.1_Missense_Mutation_p.R509M|LARP4_uc001rwq.1_Missense_Mutation_p.R432M|LARP4_uc001rwr.1_Missense_Mutation_p.R432M|LARP4_uc001rws.1_Missense_Mutation_p.R502M|LARP4_uc009zlr.1_Missense_Mutation_p.R322M|LARP4_uc001rwt.1_Missense_Mutation_p.R94M	NM_052879	NP_443111	Q71RC2	LARP4_HUMAN	c-Mpl binding protein isoform a	503							nucleotide binding|RNA binding			ovary(1)	1						TTGGAGAATAGGATGTCTGAT	0.393													32	49					1.88708e-17	2.18811e-17	1	1	0	
DIP2B	57609	broad.mit.edu	37	12	51069154	51069154	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:51069154T>G	uc001rwv.2	+	7	995	c.839T>G	c.(838-840)CTT>CGT	p.L280R	DIP2B_uc001rwu.2_Missense_Mutation_p.L280R|DIP2B_uc009zls.1_Missense_Mutation_p.L162R	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	280						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						ATCCAGCAGCTTCTGAACACT	0.363													31	57					0	0	1	0	0	
DIP2B	57609	broad.mit.edu	37	12	51133264	51133264	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:51133264C>A	uc001rwv.2	+	36	4405	c.4249C>A	c.(4249-4251)CAT>AAT	p.H1417N	DIP2B_uc009zlt.2_Missense_Mutation_p.H847N	NM_173602	NP_775873	Q9P265	DIP2B_HUMAN	DIP2 disco-interacting protein 2 homolog B	1417						nucleus	catalytic activity|transcription factor binding			ovary(4)|breast(1)|pancreas(1)	6						TCAAGCTGATCATTTCAACAC	0.517													21	82					2.37509e-13	2.65549e-13	1	1	0	
DAZAP2	9802	broad.mit.edu	37	12	51636389	51636389	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:51636389T>C	uc010snd.1	+	4	761	c.577T>C	c.(577-579)TTT>CTT	p.F193L	DAZAP2_uc001ryb.2_3'UTR|DAZAP2_uc010snc.1_3'UTR|DAZAP2_uc010sne.1_3'UTR|DAZAP2_uc010snf.1_Intron	NM_001136266	NP_001129738	Q15038	DAZP2_HUMAN	DAZ associated protein 2 isoform c	Error:Variant_position_missing_in_Q15038_after_alignment							WW domain binding				0						TTTCAGGCACTTTTCAAATTT	0.408													6	10					0	0	1	0	0	
ANKRD33	341405	broad.mit.edu	37	12	52284396	52284396	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:52284396T>C	uc001rzf.3	+	5	870	c.291T>C	c.(289-291)GTT>GTC	p.V97V	ANKRD33_uc001rzh.3_3'UTR|ANKRD33_uc001rzd.2_Silent_p.V222V|ANKRD33_uc001rze.2_Silent_p.V118V|ANKRD33_uc001rzg.3_Silent_p.V24V|ANKRD33_uc001rzi.3_Silent_p.V97V	NM_001130015	NP_001123487	Q7Z3H0	ANR33_HUMAN	ankyrin repeat domain 33 isoform 1	97											0				BRCA - Breast invasive adenocarcinoma(357;0.0969)		TGGACCCTGTTCGGGGCAAGA	0.612													18	19					0	0	1	0	0	
KRT7	3855	broad.mit.edu	37	12	52636852	52636852	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:52636852G>A	uc001saa.1	+	6	1042	c.915G>A	c.(913-915)CGG>CGA	p.R305R	KRT7_uc009zmf.1_Silent_p.R305R	NM_005556	NP_005547	P08729	K2C7_HUMAN	keratin 7	305	Rod.|Coil 2.				cytoskeleton organization|DNA replication|interphase|interspecies interaction between organisms|regulation of translation	Golgi apparatus|keratin filament|nucleus	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.105)		GGAATACCCGGAATGAGATTT	0.577													22	47					0	0	1	0	0	
KRT82	3888	broad.mit.edu	37	12	52799669	52799669	+	Silent	SNP	G	A	A	rs149898957		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:52799669G>A	uc001sai.1	-	1	508	c.393C>T	c.(391-393)TTC>TTT	p.F131F		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	131	Coil 1A.|Rod.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		TGAAAGATGCGAAACGGTTGT	0.567													138	275					0	0	1	0	0	
KRT6B	3854	broad.mit.edu	37	12	52843820	52843820	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:52843820C>A	uc001sak.2	-	3	840	c.792G>T	c.(790-792)GAG>GAT	p.E264D		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	264	Coil 1B.|Rod.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		CAAATTCATTCTCTGCTGCTG	0.473													14	159					0.000219431	0.000224109	1	1	0	
KRT6C	286887	broad.mit.edu	37	12	52862857	52862857	+	Missense_Mutation	SNP	A	G	G	rs147501308		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:52862857A>G	uc001sal.3	-	9	1732	c.1684T>C	c.(1684-1686)TAC>CAC	p.Y562H		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	562	Tail.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		TAGTGCTTGTAGCTCTTCCTG	0.607													33	62					0	0	1	0	0	
KRT6C	286887	broad.mit.edu	37	12	52865480	52865480	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:52865480C>A	uc001sal.3	-	3	840	c.792G>T	c.(790-792)GAG>GAT	p.E264D		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	264	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		CAAATTCATTCTCTGCTGCTG	0.473													32	118					4.67007e-22	5.55902e-22	1	1	0	
KRT72	140807	broad.mit.edu	37	12	52994829	52994829	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:52994829G>A	uc001sar.2	-	1	494	c.408C>T	c.(406-408)TTC>TTT	p.F136F	KRT72_uc001saq.2_Silent_p.F136F|KRT72_uc010sns.1_Silent_p.F136F|KRT72_uc010snt.1_5'UTR	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	136	Coil 1A.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		TGAAGGAGGCGAACTTGTTGT	0.537													45	82					0	0	1	0	0	
KRT1	3848	broad.mit.edu	37	12	53074020	53074020	+	Missense_Mutation	SNP	C	T	T	rs34787940	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:53074020C>T	uc001sau.1	-	1	172	c.113G>A	c.(112-114)CGC>CAC	p.R38H	KRT1_uc001sav.1_Missense_Mutation_p.R38H	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	38	Head.|Gly/Phe/Ser-rich.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						TCCTCCACTGCGGCGTGTGGA	0.453													25	36					0	0	1	0	0	
KRT76	51350	broad.mit.edu	37	12	53170559	53170559	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:53170559C>T	uc001sax.2	-	1	571	c.517G>A	c.(517-519)GAC>AAC	p.D173N		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	173	Head.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						ATCTGGGGGTCGATCTCCACA	0.502													23	49					0	0	1	0	0	
KRT4	3851	broad.mit.edu	37	12	53202570	53202570	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:53202570C>T	uc001saz.2	-	5	1392	c.1121G>A	c.(1120-1122)CGC>CAC	p.R374H		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	300						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GTCCAGGTTGCGGTTGTTGTC	0.592													40	71					0	0	1	0	0	
CSAD	51380	broad.mit.edu	37	12	53564258	53564258	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:53564258G>A	uc001sby.2	-	8	722	c.596C>T	c.(595-597)GCG>GTG	p.A199V	CSAD_uc001sbw.2_Missense_Mutation_p.A52V|CSAD_uc009zmt.2_5'UTR|CSAD_uc010snx.1_Missense_Mutation_p.A226V|CSAD_uc001sbz.2_Missense_Mutation_p.A199V|CSAD_uc009zmu.2_Missense_Mutation_p.A52V|CSAD_uc001sca.3_RNA	NM_015989	NP_057073	Q9Y600	CSAD_HUMAN	cysteine sulfinic acid decarboxylase	199					carboxylic acid metabolic process		pyridoxal phosphate binding|sulfinoalanine decarboxylase activity			ovary(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	TCCCAGAAACGCAGCTCCCTT	0.552									Hereditary_Prostate_Cancer				26	62					0	0	1	0	0	
ESPL1	9700	broad.mit.edu	37	12	53680078	53680078	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:53680078C>T	uc001sck.2	+	18	3649	c.3558C>T	c.(3556-3558)GTC>GTT	p.V1186V	ESPL1_uc001scj.2_Silent_p.V861V|ESPL1_uc010soe.1_Intron	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1186					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						TGCTGCAGGTCGTGCTGAAGG	0.617													34	80					0	0	1	0	0	
MAP3K12	7786	broad.mit.edu	37	12	53880773	53880773	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:53880773T>C	uc001sdm.1	-	3	402	c.304A>G	c.(304-306)ATT>GTT	p.I102V	MAP3K12_uc001sdn.1_Missense_Mutation_p.I135V	NM_006301	NP_006292	Q12852	M3K12_HUMAN	mitogen-activated protein kinase kinase kinase	102					histone phosphorylation|JNK cascade|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation	cytosol|membrane fraction|plasma membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			lung(2)|ovary(1)|breast(1)|skin(1)	5						GCTTTGCCAATCATGGTCCAG	0.602													28	58					0	0	1	0	0	
HOXC12	3228	broad.mit.edu	37	12	54350167	54350167	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:54350167G>A	uc010soq.1	+	2	666	c.666G>A	c.(664-666)TCG>TCA	p.S222S		NM_173860	NP_776272	P31275	HXC12_HUMAN	homeobox C12	222	Homeobox.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						AGCCCTATTCGAAGTTGCAAC	0.582													64	110					0	0	1	0	0	
HOXC6	3223	broad.mit.edu	37	12	54423519	54423519	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:54423519C>A	uc001sev.2	+	2	593	c.481C>A	c.(481-483)CAC>AAC	p.H161N	HOXC6_uc001ses.2_Missense_Mutation_p.H79N|HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron	NM_004503	NP_004494	P09630	HXC6_HUMAN	homeobox C6 isoform 1	161	Homeobox.				regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|upper_aerodigestive_tract(1)	3						GAAGGAATTTCACTTCAATCG	0.602													42	113					1.15183e-24	1.38497e-24	1	1	0	
HOXC5	3222	broad.mit.edu	37	12	54428171	54428171	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:54428171C>T	uc001sew.2	+	2	639	c.564C>T	c.(562-564)ATC>ATT	p.I188I	HOXC5_uc001set.2_RNA|HOXC4_uc001seu.2_Intron	NM_018953	NP_061826	Q00444	HXC5_HUMAN	homeobox C5	188	Homeobox.				regulation of transcription from RNA polymerase II promoter	cell junction|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCATAGAGATCGCCAACAACT	0.498													45	72					0	0	1	0	0	
OR6C3	254786	broad.mit.edu	37	12	55725556	55725556	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:55725556T>G	uc010spj.1	+	1	72	c.72T>G	c.(70-72)ATT>ATG	p.I24M		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	24	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGATTGTGATTTTTCTCTTTT	0.418													46	97					0	0	1	0	0	
OR6C70	390327	broad.mit.edu	37	12	55863404	55863404	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:55863404A>G	uc010spn.1	-	1	519	c.519T>C	c.(517-519)GAT>GAC	p.D173D		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AAATGAAATGATCAATGATAT	0.358													45	96					0	0	1	0	0	
OR6C68	403284	broad.mit.edu	37	12	55886733	55886733	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:55886733C>A	uc010spo.1	+	1	587	c.587C>A	c.(586-588)TCA>TAA	p.S196*		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCAGACACATCATTAATTGAG	0.353													20	39					1.33834e-09	1.43956e-09	1	1	0	
DNAJC14	85406	broad.mit.edu	37	12	56215887	56215887	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56215887C>T	uc001shx.1	-	7	2187	c.1983G>A	c.(1981-1983)GGG>GGA	p.G661G	DNAJC14_uc001shu.1_Silent_p.G661G|DNAJC14_uc009zob.1_Silent_p.G661G	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	661					protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						CAAAGAAGTTCCCATTGGGCA	0.562													24	48					0	0	1	0	0	
MMP19	4327	broad.mit.edu	37	12	56231717	56231717	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56231717A>G	uc001sib.2	-	7	1091	c.970T>C	c.(970-972)TTC>CTC	p.F324L	MMP19_uc001sia.2_Missense_Mutation_p.F38L|MMP19_uc001sid.2_RNA|MMP19_uc010spw.1_Missense_Mutation_p.V277A	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	324	Hemopexin-like 1.				angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						GACACTCGGAACAAGGGGCCC	0.552													27	61					0	0	1	0	0	
SILV	6490	broad.mit.edu	37	12	56349139	56349139	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56349139T>G	uc001sip.2	-	10	1800	c.1769A>C	c.(1768-1770)GAA>GCA	p.E590A	SILV_uc001siq.2_Missense_Mutation_p.E597A|SILV_uc010spx.1_Missense_Mutation_p.E504A|SILV_uc001sir.2_Missense_Mutation_p.E590A	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	590	Lumenal (Potential).				melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						AAGGCCTGCTTCTTGACCTGT	0.532													72	125					0	0	1	0	0	
SILV	6490	broad.mit.edu	37	12	56349922	56349922	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56349922C>T	uc001sip.2	-	7	1467	c.1436G>A	c.(1435-1437)CGA>CAA	p.R479Q	SILV_uc001siq.2_Missense_Mutation_p.R479Q|SILV_uc010spx.1_Missense_Mutation_p.R393Q|SILV_uc001sir.2_Missense_Mutation_p.R479Q	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	479	Lumenal (Potential).				melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						GGAACCATATCGATACAGAAC	0.557											OREG0021914	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	70					0	0	1	0	0	
ESYT1	23344	broad.mit.edu	37	12	56526515	56526515	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56526515G>A	uc001sjq.2	+	10	1224	c.1174G>A	c.(1174-1176)GAG>AAG	p.E392K	ESYT1_uc001sjr.2_Missense_Mutation_p.E392K	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	392	C2 1.					integral to membrane				ovary(4)|skin(1)	5						GATGGTACACGAGGTCCCAGG	0.527													19	43					0	0	1	0	0	
SMARCC2	6601	broad.mit.edu	37	12	56559121	56559121	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56559121A>G	uc001skb.2	-	26	3226	c.3120T>C	c.(3118-3120)GTT>GTC	p.V1040V	SMARCC2_uc001skd.2_Silent_p.V1071V|SMARCC2_uc001ska.2_Silent_p.V1071V|SMARCC2_uc001skc.2_Silent_p.V1070V|SMARCC2_uc010sqf.1_Silent_p.V960V	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1040	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			CAGGGGGGGGAACCCCTGGTG	0.582													28	43					0	0	1	0	0	
ANKRD52	283373	broad.mit.edu	37	12	56648032	56648032	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56648032G>A	uc001skm.3	-	8	815	c.725C>T	c.(724-726)GCT>GTT	p.A242V	ANKRD52_uc001skn.1_RNA	NM_173595	NP_775866	Q8NB46	ANR52_HUMAN	ankyrin repeat domain 52	242	ANK 8.						protein binding			ovary(2)	2						GATGTGCAAAGCTGTGTTTCC	0.507													69	170					0	0	1	0	0	
CS	1431	broad.mit.edu	37	12	56693974	56693974	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56693974A>C	uc001sks.1	-	1	202	c.12T>G	c.(10-12)CTT>CTG	p.L4L	CS_uc010sql.1_5'UTR|CS_uc001skr.1_5'UTR|CS_uc001skt.1_5'UTR	NM_004077	NP_004068	O75390	CISY_HUMAN	citrate synthase precursor	4					cellular carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	citrate (Si)-synthase activity				0		Myeloproliferative disorder(1001;0.000374)		BRCA - Breast invasive adenocarcinoma(357;6.17e-07)		CGGCCGCAGTAAGTAAAGCCA	0.706													3	4					0	0	1	0	0	
STAT2	6773	broad.mit.edu	37	12	56740662	56740662	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56740662C>T	uc001slc.2	-	20	1880	c.1802G>A	c.(1801-1803)CGC>CAC	p.R601H	STAT2_uc001slb.2_Missense_Mutation_p.R143H|STAT2_uc001sld.2_Missense_Mutation_p.R597H	NM_005419	NP_005410	P52630	STAT2_HUMAN	signal transducer and activator of transcription	601	SH2.				interspecies interaction between organisms|JAK-STAT cascade|regulation of transcription from RNA polymerase II promoter|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	cytosol|nucleoplasm|plasma membrane	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						TTCACTGAAGCGCAGTAGAAA	0.587													32	68					0	0	1	0	0	
APOF	319	broad.mit.edu	37	12	56755504	56755504	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:56755504G>A	uc001sle.1	-	2	540	c.486C>T	c.(484-486)GTC>GTT	p.V162V		NM_001638	NP_001629	Q13790	APOF_HUMAN	apolipoprotein F precursor	162					cholesterol metabolic process	high-density lipoprotein particle|low-density lipoprotein particle	cholesterol binding|lipid transporter activity|receptor binding				0						GGGAGCGCCCGACCCTTCCTG	0.587													4	25					0	0	1	0	0	
BAZ2A	11176	broad.mit.edu	37	12	57000092	57000092	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:57000092C>A	uc001slq.1	-	12	2398	c.2204G>T	c.(2203-2205)AGA>ATA	p.R735I	BAZ2A_uc001slp.1_Missense_Mutation_p.R733I|BAZ2A_uc009zov.1_5'Flank|BAZ2A_uc009zow.1_Missense_Mutation_p.R703I	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	735	Lys-rich.|Potential.				chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						CCGCTTATTTCTGGCCTGTAA	0.438													24	29					3.08376e-08	3.26638e-08	1	1	0	
HSD17B6	8630	broad.mit.edu	37	12	57167906	57167906	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:57167906C>T	uc001smg.1	+	2	380	c.270C>T	c.(268-270)ATC>ATT	p.I90I		NM_003725	NP_003716	O14756	H17B6_HUMAN	hydroxysteroid (17-beta) dehydrogenase 6	90					androgen biosynthetic process|androgen catabolic process	early endosome membrane|endoplasmic reticulum|microsome	binding|electron carrier activity|estradiol 17-beta-dehydrogenase activity|retinol dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			upper_aerodigestive_tract(1)|pancreas(1)	2					Succinic acid(DB00139)	TGGAGAGCATCGCTGCAGCTA	0.512													23	62					0	0	1	0	0	
HSD17B6	8630	broad.mit.edu	37	12	57180939	57180939	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:57180939A>C	uc001smg.1	+	5	877	c.767A>C	c.(766-768)AAT>ACT	p.N256T		NM_003725	NP_003716	O14756	H17B6_HUMAN	hydroxysteroid (17-beta) dehydrogenase 6	256					androgen biosynthetic process|androgen catabolic process	early endosome membrane|endoplasmic reticulum|microsome	binding|electron carrier activity|estradiol 17-beta-dehydrogenase activity|retinol dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			upper_aerodigestive_tract(1)|pancreas(1)	2					Succinic acid(DB00139)	GGGCTGTTGAATTGTAGCACA	0.403													35	61					0	0	1	0	0	
MYO1A	4640	broad.mit.edu	37	12	57441820	57441820	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:57441820G>T	uc001smw.3	-	3	426	c.183C>A	c.(181-183)TTC>TTA	p.F61L	MYO1A_uc010sqz.1_5'Flank|MYO1A_uc009zpd.2_Missense_Mutation_p.F61L	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	61	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						ATTTGGCAATGAACTCTGGCC	0.498													20	44					2.89027e-11	3.162e-11	1	1	0	
PIP4K2C	79837	broad.mit.edu	37	12	57993209	57993209	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:57993209C>T	uc001sou.2	+	6	818	c.687C>T	c.(685-687)AGC>AGT	p.S229S	PIP4K2C_uc001sot.2_Silent_p.S229S|PIP4K2C_uc010srs.1_Silent_p.S211S|PIP4K2C_uc010srt.1_Silent_p.S181S	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	229	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					GGGAAGCCAGCGATAAGGAAA	0.502													20	43					0	0	1	0	0	
GEFT	115557	broad.mit.edu	37	12	58005727	58005727	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:58005727G>A	uc001spb.2	+	1	510	c.50G>A	c.(49-51)CGA>CAA	p.R17Q	GEFT_uc009zpy.2_Intron|GEFT_uc001soz.1_Intron|GEFT_uc001spa.2_5'UTR|GEFT_uc001spd.2_5'Flank	NM_182947	NP_891992	Q86VW2	ARHGP_HUMAN	RhoA/RAC/CDC42 exchange factor isoform 1	17					regulation of Rho protein signal transduction	cytosol|plasma membrane|sarcomere	Rho guanyl-nucleotide exchange factor activity				0	Melanoma(17;0.122)					CGTGTGATCCGAAAAGTGCTG	0.537													5	21					0	0	1	0	0	
GEFT	115557	broad.mit.edu	37	12	58010244	58010244	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:58010244A>G	uc001spb.2	+	14	2058	c.1598A>G	c.(1597-1599)GAG>GGG	p.E533G	GEFT_uc009zpy.2_Missense_Mutation_p.E572G|GEFT_uc001spa.2_Missense_Mutation_p.E427G|uc001spc.2_Intron|GEFT_uc001spd.2_Missense_Mutation_p.E238G	NM_182947	NP_891992	Q86VW2	ARHGP_HUMAN	RhoA/RAC/CDC42 exchange factor isoform 1	533					regulation of Rho protein signal transduction	cytosol|plasma membrane|sarcomere	Rho guanyl-nucleotide exchange factor activity				0	Melanoma(17;0.122)					CCCAAAGGGGAGGTGGCCAGA	0.562													13	38					0	0	1	0	0	
SLC26A10	65012	broad.mit.edu	37	12	58015518	58015518	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:58015518G>A	uc001spe.2	+	4	912	c.601G>A	c.(601-603)GAA>AAA	p.E201K	SLC26A10_uc001spf.2_RNA|SLC26A10_uc009zpz.1_5'Flank	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	201						integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					CAGTCCGGCCGAACTGACCAT	0.687											OREG0021948	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	13					0	0	1	0	0	
B4GALNT1	2583	broad.mit.edu	37	12	58024083	58024083	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:58024083G>A	uc001spg.1	-	6	996	c.564C>T	c.(562-564)GAC>GAT	p.D188D	B4GALNT1_uc010sru.1_Silent_p.D133D|B4GALNT1_uc010srv.1_Silent_p.D188D|B4GALNT1_uc001sph.2_Silent_p.D188D|B4GALNT1_uc001spi.2_Silent_p.D188D	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	188	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			CCCCTGCCACGTCCCAGGTGC	0.592													9	34					0	0	1	0	0	
CYP27B1	1594	broad.mit.edu	37	12	58159172	58159172	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:58159172A>G	uc001spz.1	-	3	649	c.497T>C	c.(496-498)GTG>GCG	p.V166A	CYP27B1_uc001sqa.1_5'UTR|CYP27B1_uc001sqb.1_Silent_p.C46C|CYP27B1_uc001sqc.1_Silent_p.C46C	NM_000785	NP_000776	O15528	CP27B_HUMAN	cytochrome P450, family 27, subfamily B,	166					bone mineralization|calcium ion homeostasis|calcium ion transport|decidualization|G1 to G0 transition|hormone biosynthetic process|negative regulation of calcidiol 1-monooxygenase activity|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of keratinocyte differentiation|positive regulation of vitamin D 24-hydroxylase activity|positive regulation of vitamin D receptor signaling pathway|regulation of bone mineralization|response to estrogen stimulus|response to interferon-gamma|response to lipopolysaccharide|response to tumor necrosis factor|response to vitamin D|vitamin D biosynthetic process|xenobiotic metabolic process	mitochondrial outer membrane	calcidiol 1-monooxygenase activity|electron carrier activity|heme binding			central_nervous_system(3)	3	all_cancers(7;8.09e-80)|Lung NSC(6;2.26e-27)|all_lung(6;1.99e-25)|all_epithelial(6;3.62e-18)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;1.97e-113)|all cancers(5;1.54e-78)|BRCA - Breast invasive adenocarcinoma(9;0.0294)		Calcidiol(DB00146)|Calcitriol(DB00136)|Ergocalciferol(DB00153)	CAGACGCCGCACAAGGTCGCA	0.682											OREG0021953	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	7					0	0	1	0	0	
SLC16A7	9194	broad.mit.edu	37	12	60169004	60169004	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:60169004C>T	uc001sqs.2	+	5	1227	c.928C>T	c.(928-930)CGA>TGA	p.R310*	SLC16A7_uc001sqt.2_Nonsense_Mutation_p.R310*|SLC16A7_uc001squ.2_Nonsense_Mutation_p.R310*|SLC16A7_uc009zqi.2_Nonsense_Mutation_p.R211*|SLC16A7_uc010ssi.1_Nonsense_Mutation_p.R211*	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	310	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	CAAATATATTCGACCTCGAAT	0.413													52	96					0	0	1	0	0	
MON2	23041	broad.mit.edu	37	12	62902072	62902072	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:62902072G>T	uc001sre.2	+	8	1187	c.796G>T	c.(796-798)GAA>TAA	p.E266*	MON2_uc009zqj.2_Nonsense_Mutation_p.E266*|MON2_uc010ssl.1_Nonsense_Mutation_p.E194*|MON2_uc010ssm.1_Nonsense_Mutation_p.E266*|MON2_uc010ssn.1_Nonsense_Mutation_p.E266*|MON2_uc001srf.2_Nonsense_Mutation_p.E29*|MON2_uc001srd.1_Nonsense_Mutation_p.E158*	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	266					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		ATAGCACCAAGAATTTAGTTT	0.333													42	69					1.22674e-20	1.44972e-20	1	1	0	
PPM1H	57460	broad.mit.edu	37	12	63042363	63042363	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:63042363T>C	uc001srk.3	-	10	1600	c.1451A>G	c.(1450-1452)GAC>GGC	p.D484G		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	484	PP2C-like.						phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		CCATCCTCTGTCCTTCAGCAC	0.502													24	43					0	0	1	0	0	
MSRB3	253827	broad.mit.edu	37	12	65720710	65720710	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:65720710G>A	uc001ssn.2	+	2	263	c.202G>A	c.(202-204)GAA>AAA	p.E68K	MSRB3_uc001ssm.2_Missense_Mutation_p.E61K|MSRB3_uc009zqp.2_Missense_Mutation_p.E61K	NM_198080	NP_932346	Q8IXL7	MSRB3_HUMAN	methionine sulfoxide reductase B3 isoform 1	68					protein repair	endoplasmic reticulum|mitochondrion	peptide-methionine-(S)-S-oxide reductase activity|protein-methionine-R-oxide reductase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.131)		GAAAGGGACCGAAAGGTAAGG	0.448													12	18					0	0	1	0	0	
MSRB3	253827	broad.mit.edu	37	12	65857005	65857005	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:65857005C>T	uc001ssn.2	+	6	543	c.482C>T	c.(481-483)TCG>TTG	p.S161L	MSRB3_uc001ssm.2_Missense_Mutation_p.S154L|MSRB3_uc009zqp.2_Missense_Mutation_p.S154L	NM_198080	NP_932346	Q8IXL7	MSRB3_HUMAN	methionine sulfoxide reductase B3 isoform 1	161					protein repair	endoplasmic reticulum|mitochondrion	peptide-methionine-(S)-S-oxide reductase activity|protein-methionine-R-oxide reductase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.131)		TGCATAAATTCGGCTGCCTTG	0.547													34	62					0	0	1	0	0	
HELB	92797	broad.mit.edu	37	12	66712497	66712497	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:66712497G>T	uc001sti.2	+	7	2108	c.2080G>T	c.(2080-2082)GAT>TAT	p.D694Y	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	694					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		CTCAATTCAAGATAAGACATT	0.338													36	77					9.04072e-19	1.05817e-18	1	1	0	
GRIP1	23426	broad.mit.edu	37	12	66742845	66742845	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:66742845C>A	uc001stk.2	-	24	3426	c.3185G>T	c.(3184-3186)AGC>ATC	p.S1062I	GRIP1_uc001stj.2_Missense_Mutation_p.S829I	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	1114					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		ACCACCGTGGCTAGGCTGCTG	0.413													73	165					5.29152e-50	6.58287e-50	1	1	0	
DYRK2	8445	broad.mit.edu	37	12	68050891	68050891	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:68050891C>T	uc001str.3	+	3	606	c.204C>T	c.(202-204)GGC>GGT	p.G68G	DYRK2_uc001sts.3_5'UTR	NM_006482	NP_006473	Q92630	DYRK2_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	68					apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|positive regulation of glycogen biosynthetic process|smoothened signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|manganese ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(1)|central_nervous_system(1)	4			Lung(24;6.81e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(7;0.000573)		TCCAGATTGGCGGCAGTAAGC	0.468													19	27					0	0	1	0	0	
IL26	55801	broad.mit.edu	37	12	68619407	68619407	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:68619407C>T	uc001stx.1	-	1	165	c.130G>A	c.(130-132)GCT>ACT	p.A44T		NM_018402	NP_060872	Q9NPH9	IL26_HUMAN	interleukin 26 precursor	44					cell-cell signaling|negative regulation of epithelial cell proliferation|positive regulation of cytokine secretion|positive regulation of ERK1 and ERK2 cascade|positive regulation of JAK-STAT cascade|positive regulation of protein kinase B signaling cascade|positive regulation of stress-activated MAPK cascade|positive regulation of transcription from RNA polymerase II promoter	cytosol|extracellular space|soluble fraction	cytokine activity				0			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000515)		ATATAGAGAGCGTCAACAGCT	0.433													78	178					0	0	1	0	0	
MDM1	56890	broad.mit.edu	37	12	68696398	68696398	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:68696398A>G	uc001stz.2	-	12	2108	c.1972_splice	c.e12+1	p.V658_splice	MDM1_uc010stc.1_Splice_Site_p.V623_splice|MDM1_uc009zqv.1_Splice_Site_p.V378_splice	NM_017440	NP_059136	Q8TC05	MDM1_HUMAN	mouse Mdm1 nuclear protein homolog isoform 1							nucleus				ovary(3)|skin(2)	5			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000174)		CAAAATAATTACCATTGTGCT	0.368													23	33					0	0	1	0	0	
NUP107	57122	broad.mit.edu	37	12	69128606	69128606	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:69128606A>C	uc001suf.2	+	25	2496	c.2381A>C	c.(2380-2382)AAA>ACA	p.K794T	NUP107_uc001sug.2_Missense_Mutation_p.K553T|NUP107_uc010stj.1_Missense_Mutation_p.K765T	NM_020401	NP_065134	P57740	NU107_HUMAN	nucleoporin 107kDa	794					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			skin(1)	1	Breast(13;6.25e-06)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00694)			AAAGAAAAGAAATATGAAGTA	0.338													15	31					0	0	1	0	0	
CNOT2	4848	broad.mit.edu	37	12	70723256	70723256	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:70723256C>T	uc001svv.2	+	5	871	c.292C>T	c.(292-294)CGC>TGC	p.R98C	CNOT2_uc009zro.2_Missense_Mutation_p.R98C|CNOT2_uc009zrp.2_Missense_Mutation_p.R78C|CNOT2_uc009zrq.2_Missense_Mutation_p.R98C	NM_014515	NP_055330	Q9NZN8	CNOT2_HUMAN	CCR4-NOT transcription complex, subunit 2	98					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	protein binding|RNA polymerase II transcription cofactor activity				0	Renal(347;0.236)		GBM - Glioblastoma multiforme(1;4.77e-09)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			TCAGTTAAATCGCAGCTTATC	0.463													24	65					0	0	1	0	0	
PTPRB	5787	broad.mit.edu	37	12	70925842	70925842	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:70925842A>G	uc001swb.3	-	30	5853	c.5823T>C	c.(5821-5823)CTT>CTC	p.L1941L	uc001svz.2_Intron|PTPRB_uc010sto.1_Silent_p.L1851L|PTPRB_uc010stp.1_Silent_p.L1851L|PTPRB_uc001swc.3_Silent_p.L2159L|PTPRB_uc001swa.3_Silent_p.L2071L	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1941	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GAACCCTGTGAAGTCTTAGGT	0.478													26	35					0	0	1	0	0	
PTPRB	5787	broad.mit.edu	37	12	70986133	70986133	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:70986133C>T	uc001swb.3	-	5	1085	c.1055G>A	c.(1054-1056)CGA>CAA	p.R352Q	PTPRB_uc010sto.1_Missense_Mutation_p.R352Q|PTPRB_uc010stp.1_Missense_Mutation_p.R352Q|PTPRB_uc001swc.3_Missense_Mutation_p.R570Q|PTPRB_uc001swa.3_Missense_Mutation_p.R570Q|PTPRB_uc001swd.3_Missense_Mutation_p.R569Q|PTPRB_uc009zrr.1_Missense_Mutation_p.R449Q|PTPRB_uc001swe.2_Missense_Mutation_p.R570Q	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	352	Fibronectin type-III 4.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TTGATAAAGTCGACCGGGGAC	0.458													26	68					0	0	1	0	0	
PTPRB	5787	broad.mit.edu	37	12	71002899	71002899	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:71002899T>G	uc001swb.3	-	2	305	c.275A>C	c.(274-276)AAC>ACC	p.N92T	PTPRB_uc010sto.1_Missense_Mutation_p.N92T|PTPRB_uc010stp.1_Missense_Mutation_p.N92T|PTPRB_uc001swc.3_Missense_Mutation_p.N310T|PTPRB_uc001swa.3_Missense_Mutation_p.N310T|PTPRB_uc001swd.3_Missense_Mutation_p.N309T|PTPRB_uc009zrr.1_Missense_Mutation_p.N189T|PTPRB_uc001swe.2_Missense_Mutation_p.N310T	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	92	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AATCCTGAAGTTATAGATGGT	0.498													44	75					0	0	1	0	0	
PTPRR	5801	broad.mit.edu	37	12	71056292	71056292	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:71056292G>A	uc001swi.1	-	11	2007	c.1591C>T	c.(1591-1593)CGA>TGA	p.R531*	PTPRR_uc001swf.1_RNA|PTPRR_uc001swg.1_RNA|PTPRR_uc001swh.1_Nonsense_Mutation_p.R286*|PTPRR_uc009zrs.2_Nonsense_Mutation_p.R380*|PTPRR_uc010stq.1_Nonsense_Mutation_p.R419*|PTPRR_uc010str.1_Nonsense_Mutation_p.R380*	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	531	Tyrosine-protein phosphatase.|Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		ACAAGGTTTCGAATGGTGTAG	0.353													22	40					0	0	1	0	0	
PTPRR	5801	broad.mit.edu	37	12	71286586	71286586	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:71286586C>T	uc001swi.1	-	2	646	c.230G>A	c.(229-231)CGC>CAC	p.R77H		NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	77	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		AATCTGGTGGCGTTTGCTTAC	0.448													69	133					0	0	1	0	0	
ZFC3H1	196441	broad.mit.edu	37	12	72029233	72029233	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:72029233C>T	uc001swo.2	-	10	2587	c.2228G>A	c.(2227-2229)CGA>CAA	p.R743Q		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	743					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						CTCAGCAGTTCGTCTTGCTTC	0.333													47	88					0	0	1	0	0	
TBC1D15	64786	broad.mit.edu	37	12	72266715	72266715	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:72266715G>A	uc001swu.2	+	3	211	c.202G>A	c.(202-204)GAA>AAA	p.E68K	TBC1D15_uc009zrv.2_5'UTR|TBC1D15_uc010stt.1_Missense_Mutation_p.E54K|TBC1D15_uc001swv.2_Missense_Mutation_p.E68K|TBC1D15_uc001sww.2_5'UTR	NM_022771	NP_073608	Q8TC07	TBC15_HUMAN	TBC1 domain family, member 15 isoform 1	46							protein binding|Rab GTPase activator activity				0						CTAGGATGCCGAAGTAATAGT	0.308													48	124					0	0	1	0	0	
TBC1D15	64786	broad.mit.edu	37	12	72266725	72266725	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:72266725T>C	uc001swu.2	+	3	221	c.212T>C	c.(211-213)GTG>GCG	p.V71A	TBC1D15_uc009zrv.2_5'UTR|TBC1D15_uc010stt.1_Missense_Mutation_p.V57A|TBC1D15_uc001swv.2_Missense_Mutation_p.V71A|TBC1D15_uc001sww.2_5'UTR	NM_022771	NP_073608	Q8TC07	TBC15_HUMAN	TBC1 domain family, member 15 isoform 1	49							protein binding|Rab GTPase activator activity				0						GAAGTAATAGTGGACTGGAGA	0.299													48	123					0	0	1	0	0	
TPH2	121278	broad.mit.edu	37	12	72372774	72372774	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:72372774G>A	uc009zrw.1	+	7	989	c.848G>A	c.(847-849)AGC>AAC	p.S283N	TPH2_uc001swy.2_Missense_Mutation_p.S193N	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	283					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	GGATACCTGAGCCCACGAGAC	0.532													59	112					0	0	1	0	0	
GLIPR1L1	256710	broad.mit.edu	37	12	75737646	75737646	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:75737646T>G	uc001sxo.2	+	2	394	c.348T>G	c.(346-348)GCT>GCG	p.A116A	CAPS2_uc001sxm.3_Intron|CAPS2_uc009zsa.2_Intron|GLIPR1L1_uc001sxn.2_Silent_p.A116A	NM_152779	NP_689992	Q6UWM5	GPRL1_HUMAN	GLI pathogenesis-related 1 like 1	116						extracellular region					0						CCATTACGGCTTGGTATAATG	0.338													22	34					0	0	1	0	0	
KRR1	11103	broad.mit.edu	37	12	75897739	75897739	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:75897739T>C	uc001sxt.2	-	7	817	c.776A>G	c.(775-777)AAA>AGA	p.K259R	KRR1_uc009zsc.2_Intron	NM_007043	NP_008974	Q13601	KRR1_HUMAN	HIV-1 rev binding protein 2	259	Lys-rich.				rRNA processing	nucleolus|ribonucleoprotein complex	RNA binding			ovary(1)|pancreas(1)	2						AACAGTTTTTTTCTTTGGTTC	0.353													44	109					0	0	1	0	0	
KRR1	11103	broad.mit.edu	37	12	75902105	75902105	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:75902105T>G	uc001sxt.2	-	2	248	c.207A>C	c.(205-207)GAA>GAC	p.E69D	KRR1_uc009zsc.2_Missense_Mutation_p.E69D|KRR1_uc010stx.1_Missense_Mutation_p.E69D	NM_007043	NP_008974	Q13601	KRR1_HUMAN	HIV-1 rev binding protein 2	69				E -> G (in Ref. 1; AAH16778).	rRNA processing	nucleolus|ribonucleoprotein complex	RNA binding			ovary(1)|pancreas(1)	2						TCAAGTAAGCTTCCCTGTATT	0.403													22	43					0	0	1	0	0	
PHLDA1	22822	broad.mit.edu	37	12	76424776	76424776	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:76424776T>C	uc001sxu.2	-	1	781	c.746A>G	c.(745-747)TAC>TGC	p.Y249C		NM_007350	NP_031376	Q8WV24	PHLA1_HUMAN	pleckstrin homology-like domain, family A,	249	PH.				apoptosis	cytoplasmic vesicle membrane|nucleolus|plasma membrane	protein binding				0		Colorectal(145;0.09)				GAAGTACATGTACTTGCCCTT	0.602													26	47					0	0	1	0	0	
ZDHHC17	23390	broad.mit.edu	37	12	77235880	77235880	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:77235880G>T	uc001syk.1	+	11	1423	c.1260G>T	c.(1258-1260)AAG>AAT	p.K420N		NM_015336	NP_056151	Q8IUH5	ZDH17_HUMAN	huntingtin interacting protein 14	420	Cytoplasmic (Potential).				lipoprotein transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|protein binding|protein-cysteine S-palmitoleyltransferase activity|signal transducer activity|zinc ion binding				0						AAGAGCAAAAGAAAAAGGTAG	0.348													11	20					5.50884e-06	5.70595e-06	1	1	0	
ZDHHC17	23390	broad.mit.edu	37	12	77244667	77244667	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:77244667C>T	uc001syk.1	+	17	1964	c.1801C>T	c.(1801-1803)CGA>TGA	p.R601*		NM_015336	NP_056151	Q8IUH5	ZDH17_HUMAN	huntingtin interacting protein 14	601	Cytoplasmic (Potential).				lipoprotein transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|protein binding|protein-cysteine S-palmitoleyltransferase activity|signal transducer activity|zinc ion binding				0						CTTTGAATTTCGATGCTGTGG	0.403													49	95					0	0	1	0	0	
E2F7	144455	broad.mit.edu	37	12	77439830	77439830	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:77439830C>T	uc001sym.3	-	5	1053	c.817G>A	c.(817-819)GAC>AAC	p.D273N	E2F7_uc001syn.2_Missense_Mutation_p.D273N	NM_203394	NP_976328	Q96AV8	E2F7_HUMAN	E2F transcription factor 7	273					cell cycle	transcription factor complex	DNA binding|identical protein binding			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3						GAGGGACAGTCGGGTTCAGAG	0.438													36	63					0	0	1	0	0	
NAV3	89795	broad.mit.edu	37	12	78388626	78388626	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:78388626G>A	uc001syp.2	+	6	888	c.715G>A	c.(715-717)GCA>ACA	p.A239T	NAV3_uc001syo.2_Missense_Mutation_p.A239T	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	239						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CAGTGGAATTGCAACCAGTCA	0.343										HNSCC(70;0.22)			26	63					0	0	1	0	0	
NAV3	89795	broad.mit.edu	37	12	78513721	78513721	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:78513721C>T	uc001syp.2	+	15	3918	c.3745C>T	c.(3745-3747)CGA>TGA	p.R1249*	NAV3_uc001syo.2_Nonsense_Mutation_p.R1249*|NAV3_uc010sub.1_Nonsense_Mutation_p.R749*|NAV3_uc009zsf.2_Nonsense_Mutation_p.R257*	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1249	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ACCCACATTTCGAAGGTAAGG	0.353										HNSCC(70;0.22)			21	38					0	0	1	0	0	
NAV3	89795	broad.mit.edu	37	12	78598740	78598740	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:78598740A>G	uc001syp.2	+	39	7033	c.6860A>G	c.(6859-6861)GAA>GGA	p.E2287G	NAV3_uc001syo.2_Missense_Mutation_p.E2265G|NAV3_uc010sub.1_Missense_Mutation_p.E1744G|NAV3_uc009zsf.2_Missense_Mutation_p.E1096G	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2287						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ACACCATGGGAAGATCCTTCA	0.463										HNSCC(70;0.22)			25	45					0	0	1	0	0	
LIN7A	8825	broad.mit.edu	37	12	81239585	81239585	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:81239585C>T	uc001szj.1	-	4	600	c.407G>A	c.(406-408)CGC>CAC	p.R136H	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	136	PDZ.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						AGGAATTATGCGAGAGATATA	0.468													31	57					0	0	1	0	0	
C12orf26	84190	broad.mit.edu	37	12	82792980	82792980	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:82792980C>A	uc001szq.2	+	4	959	c.938C>A	c.(937-939)TCT>TAT	p.S313Y		NM_032230	NP_115606	Q8N6Q8	CL026_HUMAN	hypothetical protein LOC84190	313											0						AATTCCTTTTCTCTTATAAAC	0.343													26	52					2.79863e-10	3.03339e-10	1	1	0	
SLC6A15	55117	broad.mit.edu	37	12	85264417	85264417	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:85264417G>A	uc001szv.2	-	9	1828	c.1335C>T	c.(1333-1335)GCC>GCT	p.A445A	SLC6A15_uc010sul.1_Silent_p.A338A|SLC6A15_uc001szw.1_Silent_p.A153A	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	445	Extracellular (Potential).				cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3						CTTCTGTAAAGGCAATAAAAG	0.413													39	74					0	0	1	0	0	
TSPAN19	144448	broad.mit.edu	37	12	85411330	85411330	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:85411330T>C	uc009zsj.2	-	7	600	c.499A>G	c.(499-501)AAC>GAC	p.N167D		NM_001100917	NP_001094387	P0C672	TSN19_HUMAN	tetraspanin 19	167						integral to membrane				ovary(1)	1						TTTTCTTTGTTCTTATTCTTT	0.338													8	10					0	0	1	0	0	
LRRIQ1	84125	broad.mit.edu	37	12	85492191	85492191	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:85492191T>G	uc001tac.2	+	12	3057	c.2946T>G	c.(2944-2946)ATT>ATG	p.I982M	LRRIQ1_uc001tab.1_Missense_Mutation_p.I982M	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	982	LRR 5.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		ATCAGTTAATTAATACAAAAG	0.348													26	50					0	0	1	0	0	
NTS	4922	broad.mit.edu	37	12	86276065	86276065	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:86276065G>T	uc001tag.2	+	4	532	c.425G>T	c.(424-426)AGA>ATA	p.R142I		NM_006183	NP_006174	P30990	NEUT_HUMAN	neurotensin/neuromedin N preproprotein	142					regulation of blood vessel size|signal transduction	extracellular region|soluble fraction|transport vesicle	neuropeptide hormone activity				0						GTCATAAAGAGAAAAATTCCT	0.323													60	120					5.19286e-32	6.36825e-32	1	1	0	
MGAT4C	25834	broad.mit.edu	37	12	86373668	86373668	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:86373668A>C	uc001tai.3	-	8	2086	c.836T>G	c.(835-837)TTT>TGT	p.F279C	MGAT4C_uc001tal.3_Missense_Mutation_p.F279C|MGAT4C_uc001taj.3_Missense_Mutation_p.F279C|MGAT4C_uc001tak.3_Missense_Mutation_p.F279C|MGAT4C_uc010sum.1_Missense_Mutation_p.F303C|MGAT4C_uc001tah.3_Missense_Mutation_p.F279C	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	279	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TTCTTGATAAAACATTAATAA	0.388													32	60					0	0	1	0	0	
MGAT4C	25834	broad.mit.edu	37	12	86383216	86383216	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:86383216G>T	uc001tai.3	-	6	1359	c.109C>A	c.(109-111)CTT>ATT	p.L37I	MGAT4C_uc001tal.3_Missense_Mutation_p.L37I|MGAT4C_uc001taj.3_Missense_Mutation_p.L37I|MGAT4C_uc001tak.3_Missense_Mutation_p.L37I|MGAT4C_uc010sum.1_Missense_Mutation_p.L61I|MGAT4C_uc001tah.3_Missense_Mutation_p.L37I	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	37	Helical; Signal-anchor for type II membrane protein; (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TTCATAAAAAGGAGAAAAATG	0.313													11	21					1.58986e-06	1.65575e-06	1	1	0	
C12orf50	160419	broad.mit.edu	37	12	88420349	88420349	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:88420349G>A	uc001tam.1	-	3	217	c.49C>T	c.(49-51)CCT>TCT	p.P17S	C12orf50_uc001tan.2_Missense_Mutation_p.P71S	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	17										skin(2)|ovary(1)	3						CAACCAAGAGGCTGAGTTTCC	0.368													18	49					0	0	1	0	0	
CEP290	80184	broad.mit.edu	37	12	88482952	88482952	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:88482952C>A	uc001tar.2	-	31	4230	c.3886G>T	c.(3886-3888)GAC>TAC	p.D1296Y	CEP290_uc001taq.2_Missense_Mutation_p.D356Y	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	1296	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						TTAAGTTTGTCATTTTGTAGT	0.358													12	21					1.08611e-07	1.14333e-07	1	1	0	
DUSP6	1848	broad.mit.edu	37	12	89745792	89745792	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:89745792G>A	uc001tay.2	-	1	505	c.25C>T	c.(25-27)CCC>TCC	p.P9S	DUSP6_uc001taz.2_Missense_Mutation_p.P9S	NM_001946	NP_001937	Q16828	DUS6_HUMAN	dual specificity phosphatase 6 isoform a	9					dorsal/ventral pattern formation|inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|nerve growth factor receptor signaling pathway|positive regulation of apoptosis|regulation of endodermal cell fate specification|regulation of fibroblast growth factor receptor signaling pathway|regulation of heart growth|response to nitrosative stress|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0						GACGCGAAGGGCACGGGTCTG	0.687													28	62					0	0	1	0	0	
POC1B	282809	broad.mit.edu	37	12	89864189	89864189	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:89864189C>T	uc001tbc.2	-	7	864	c.759G>A	c.(757-759)AAG>AAA	p.K253K	POC1B_uc001tba.2_Silent_p.K211K|POC1B_uc001tbb.2_Silent_p.K123K|POC1B_uc010sun.1_RNA|POC1B_uc009zsp.2_RNA|POC1B_uc009zsq.2_Intron	NM_172240	NP_758440	Q8TC44	POC1B_HUMAN	WD repeat domain 51B	253	WD 6.				cell projection organization	centriole|microtubule basal body				ovary(1)	1						GGTCCAGAATCTTAAGGGTAC	0.348													33	55					0	0	1	0	0	
ATP2B1	490	broad.mit.edu	37	12	90004246	90004246	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:90004246G>A	uc001tbh.2	-	13	2468	c.2287C>T	c.(2287-2289)CGA>TGA	p.R763*	ATP2B1_uc001tbg.2_Nonsense_Mutation_p.R763*|ATP2B1_uc001tbf.2_Nonsense_Mutation_p.R433*	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	763	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						GCAAGTACTCGAAGTTTTGGC	0.323													64	125					0	0	1	0	0	
LUM	4060	broad.mit.edu	37	12	91502039	91502039	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:91502039C>T	uc001tbm.2	-	2	1107	c.718G>A	c.(718-720)GAA>AAA	p.E240K	LUM_uc001tbn.2_RNA	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	240	LRR 8.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						TCAGCCAGTTCGTTGTGAGAT	0.388													74	109					0	0	1	0	0	
PLEKHG7	440107	broad.mit.edu	37	12	93162759	93162759	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:93162759T>G	uc001tcj.2	+	11	1165	c.935T>G	c.(934-936)GTC>GGC	p.V312G		NM_001004330	NP_001004330	Q6ZR37	PKHG7_HUMAN	pleckstrin homology domain containing, family G	312	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1						CTTTTTCTAGTCTTTGGGCTG	0.328													8	18					0	0	1	0	0	
EEA1	8411	broad.mit.edu	37	12	93170682	93170682	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:93170682C>T	uc001tck.2	-	28	4316	c.4051G>A	c.(4051-4053)GAA>AAA	p.E1351K		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	1351					early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						TCATTGTCTTCGGCCCACTTT	0.323													48	108					0	0	1	0	0	
EEA1	8411	broad.mit.edu	37	12	93181715	93181715	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:93181715T>G	uc001tck.2	-	22	3343	c.3078A>C	c.(3076-3078)GAA>GAC	p.E1026D		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	1026	Gln/Glu/Lys-rich.|Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						GTTTGAAAGTTTCCTGACTTT	0.378													16	32					0	0	1	0	0	
PLXNC1	10154	broad.mit.edu	37	12	94641876	94641876	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:94641876A>C	uc001tdc.2	+	13	2835	c.2586A>C	c.(2584-2586)AAA>AAC	p.K862N		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	862	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TGGAAGTGAAAATTCAAGTAT	0.488													20	52					0	0	1	0	0	
PLXNC1	10154	broad.mit.edu	37	12	94649056	94649056	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:94649056G>T	uc001tdc.2	+	17	3320	c.3071G>T	c.(3070-3072)AGA>ATA	p.R1024I	PLXNC1_uc010sut.1_Missense_Mutation_p.R71I	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1024	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TTTGCTCTGAGAACTTTCTTC	0.398													21	50					2.89027e-11	3.162e-11	1	1	0	
PLXNC1	10154	broad.mit.edu	37	12	94673390	94673390	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:94673390C>T	uc001tdc.2	+	22	3989	c.3740C>T	c.(3739-3741)TCT>TTT	p.S1247F	PLXNC1_uc010sut.1_Missense_Mutation_p.S294F|PLXNC1_uc009zsv.2_5'UTR	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1247	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						AAAAATGGCTCTCCTTATGGA	0.413													18	45					0	0	1	0	0	
FGD6	55785	broad.mit.edu	37	12	95478317	95478317	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:95478317A>G	uc001tdp.3	-	20	4437	c.4213T>C	c.(4213-4215)TTA>CTA	p.L1405L	FGD6_uc009zsx.2_Silent_p.L538L	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	1405	PH 2.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						ACATAAAATAACATGTTTTTG	0.343													29	59					0	0	1	0	0	
FGD6	55785	broad.mit.edu	37	12	95479665	95479665	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:95479665T>C	uc001tdp.3	-	19	4222	c.3998A>G	c.(3997-3999)GAT>GGT	p.D1333G	FGD6_uc009zsx.2_Missense_Mutation_p.D466G|FGD6_uc001tdq.1_Missense_Mutation_p.D369G	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	1333	PH 2.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CATAGAAGAATCCTCTGTGTT	0.333													46	95					0	0	1	0	0	
FGD6	55785	broad.mit.edu	37	12	95603582	95603582	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:95603582C>T	uc001tdp.3	-	2	1702	c.1478G>A	c.(1477-1479)CGA>CAA	p.R493Q	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	493					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						GGGGACAATTCGTAGAGAATT	0.403													48	92					0	0	1	0	0	
FGD6	55785	broad.mit.edu	37	12	95603952	95603952	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:95603952A>G	uc001tdp.3	-	2	1332	c.1108T>C	c.(1108-1110)TGT>CGT	p.C370R	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	370					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						TCCTGCTTACACAAAACATTC	0.373													7	102					0	0	1	0	0	
FGD6	55785	broad.mit.edu	37	12	95604098	95604098	+	Missense_Mutation	SNP	C	T	T	rs148149725		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:95604098C>T	uc001tdp.3	-	2	1186	c.962G>A	c.(961-963)CGA>CAA	p.R321Q	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	321					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						ACGAGCAGTTCGTGTCTTTCT	0.423													44	110					0	0	1	0	0	
METAP2	10988	broad.mit.edu	37	12	95906667	95906667	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:95906667T>G	uc001tec.2	+	10	1293	c.1159T>G	c.(1159-1161)TTT>GTT	p.F387V	METAP2_uc010suv.1_Missense_Mutation_p.F364V|METAP2_uc009ztd.2_Missense_Mutation_p.F351V|METAP2_uc001ted.2_Missense_Mutation_p.F386V|METAP2_uc001tef.2_Missense_Mutation_p.F364V|METAP2_uc001tee.2_RNA	NM_006838	NP_006829	P50579	AMPM2_HUMAN	methionyl aminopeptidase 2	387					N-terminal protein amino acid modification|peptidyl-methionine modification|protein processing|proteolysis	cytoplasm	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0					L-Methionine(DB00134)	CATGAAAAATTTTGATGTTGG	0.343													15	38					0	0	1	0	0	
CCDC38	120935	broad.mit.edu	37	12	96312688	96312689	+	Missense_Mutation	DNP	AG	CT	CT			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:96312688_96312689AG>CT	uc001tek.1	-	3	337_338	c.103_104CT>AG	c.(103-105)CTT>AGT	p.L35S		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	35										skin(1)	1						TTCTTTGACAAGAAAGAGATCT	0.327													28	41					0	0	1	0	0	
CDK17	5128	broad.mit.edu	37	12	96692758	96692758	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:96692758T>C	uc001tep.1	-	7	1093	c.604A>G	c.(604-606)ACA>GCA	p.T202A	CDK17_uc009ztk.2_Missense_Mutation_p.T202A|CDK17_uc010svb.1_Missense_Mutation_p.T149A	NM_002595	NP_002586	Q00537	CDK17_HUMAN	PCTAIRE protein kinase 2	202	Protein kinase.|ATP (By similarity).						ATP binding|cyclin-dependent protein kinase activity			ovary(3)|lung(2)|kidney(1)|central_nervous_system(1)	7						GTTGCATATGTACCCTATAAA	0.333													16	41					0	0	1	0	0	
C12orf63	374467	broad.mit.edu	37	12	97051678	97051678	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:97051678G>T	uc001tet.1	+	4	472	c.394G>T	c.(394-396)GAA>TAA	p.E132*		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	132										skin(6)|ovary(1)	7						AGACAAAGGAGAATTCAGTGT	0.323													48	173					6.34439e-16	7.25681e-16	1	1	0	
C12orf63	374467	broad.mit.edu	37	12	97093822	97093822	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:97093822A>G	uc001tet.1	+	13	1778	c.1700A>G	c.(1699-1701)AAC>AGC	p.N567S		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	567										skin(6)|ovary(1)	7						TATGGAAAAAACATGCCTTGT	0.343													30	62					0	0	1	0	0	
C12orf63	374467	broad.mit.edu	37	12	97136242	97136242	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:97136242A>C	uc001tet.1	+	19	2450	c.2372A>C	c.(2371-2373)GAG>GCG	p.E791A		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	791										skin(6)|ovary(1)	7						GATGACAGTGAGTTTTTAGAT	0.348													4	24					0	0	1	0	0	
NEDD1	121441	broad.mit.edu	37	12	97345812	97345812	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:97345812G>T	uc001teu.3	+	16	2303	c.1964G>T	c.(1963-1965)AGA>ATA	p.R655I	NEDD1_uc001tev.3_Missense_Mutation_p.R655I|NEDD1_uc010svc.1_Missense_Mutation_p.R566I|NEDD1_uc001tew.2_Missense_Mutation_p.R662I|NEDD1_uc001tex.2_Missense_Mutation_p.R566I	NM_152905	NP_690869	Q8NHV4	NEDD1_HUMAN	neural precursor cell expressed, developmentally	655					cell division|G2/M transition of mitotic cell cycle|mitosis	cytosol					0						GAAAACAAAAGATTACGGGCC	0.348													20	43					3.51602e-12	3.88498e-12	1	1	0	
SLC25A3	5250	broad.mit.edu	37	12	98992403	98992403	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:98992403G>A	uc001tfo.2	+	5	686	c.566G>A	c.(565-567)CGA>CAA	p.R189Q	SLC25A3_uc001tfm.2_Missense_Mutation_p.R188Q|SLC25A3_uc001tfn.2_Missense_Mutation_p.R188Q|SLC25A3_uc001tfp.2_Missense_Mutation_p.R188Q|SLC25A3_uc001tfq.2_Missense_Mutation_p.R58Q|SLC25A3_uc001tfr.2_Missense_Mutation_p.R189Q|SLC25A3_uc001tfs.2_Missense_Mutation_p.R145Q|SLC25A3_uc009ztn.2_Missense_Mutation_p.R188Q|SLC25A3_uc001tft.2_Missense_Mutation_p.R188Q|SNORA53_uc001tfu.1_5'Flank	NM_005888	NP_005879	Q00325	MPCP_HUMAN	solute carrier family 25 member 3 isoform a	189	Solcar 2.|Mitochondrial matrix (Potential).				generation of precursor metabolites and energy	integral to plasma membrane|mitochondrial inner membrane	phosphate carrier activity|symporter activity				0		Lung NSC(355;4.08e-05)|Breast(359;0.00191)|Colorectal(145;0.00205)|Myeloproliferative disorder(1001;0.0255)		GBM - Glioblastoma multiforme(134;1.36e-23)|BRCA - Breast invasive adenocarcinoma(302;0.000115)		GCTAAGGTTCGAATTCAAACC	0.438													31	40					0	0	1	0	0	
APAF1	317	broad.mit.edu	37	12	99080609	99080609	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:99080609T>G	uc001tfz.2	+	16	2839	c.2262T>G	c.(2260-2262)GAT>GAG	p.D754E	APAF1_uc001tfy.2_Missense_Mutation_p.D743E|APAF1_uc001tga.2_Missense_Mutation_p.D743E|APAF1_uc001tgb.2_Missense_Mutation_p.D754E|APAF1_uc001tgc.2_Intron|APAF1_uc009zto.2_Missense_Mutation_p.D163E	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	754	WD 4.				activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	TTTCACCAGATGATAAGCTTT	0.323													6	64					0	0	1	0	0	
APAF1	317	broad.mit.edu	37	12	99093197	99093197	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:99093197G>A	uc001tfz.2	+	17	2893	c.2316G>A	c.(2314-2316)GCG>GCA	p.A772A	APAF1_uc001tfy.2_Silent_p.A761A|APAF1_uc001tga.2_Silent_p.A761A|APAF1_uc001tgb.2_Silent_p.A772A|APAF1_uc001tgc.2_Intron|APAF1_uc009zto.2_Silent_p.A181A	NM_181861	NP_863651	O14727	APAF_HUMAN	apoptotic peptidase activating factor 1 isoform	772	WD 4.				activation of caspase activity by cytochrome c|defense response|induction of apoptosis by intracellular signals|nervous system development	cytosol|Golgi apparatus|nucleus	ATP binding|caspase activator activity|protein binding			ovary(2)|lung(1)	3					Adenosine triphosphate(DB00171)	TTTGGGATGCGACATCAGCAA	0.328													16	40					0	0	1	0	0	
SCYL2	55681	broad.mit.edu	37	12	100711646	100711646	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:100711646G>T	uc001thn.2	+	10	1388	c.1338G>T	c.(1336-1338)AAG>AAT	p.K446N	SCYL2_uc009ztw.1_Missense_Mutation_p.K273N|SCYL2_uc001thm.1_Missense_Mutation_p.K446N	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	446	HEAT.				endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						ATGAGATAAAGAACAGTGTTC	0.343													33	49					1.26612e-14	1.43161e-14	1	1	0	
SCYL2	55681	broad.mit.edu	37	12	100732689	100732689	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:100732689C>A	uc001thn.2	+	18	2579	c.2529C>A	c.(2527-2529)CTC>CTA	p.L843L		NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	843	Necessary for interaction with AP2 complex and clathrin, interaction with clathrin is necessary for its targeting to the TGN and endosomal membranes.				endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						TTAATAATCTCTTTGGCCCTC	0.448													109	199					1.43872e-54	1.79282e-54	1	1	0	
SLC17A8	246213	broad.mit.edu	37	12	100806591	100806591	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:100806591G>A	uc010svi.1	+	10	1543	c.1230G>A	c.(1228-1230)TCG>TCA	p.S410S	SLC17A8_uc009ztx.2_Silent_p.S360S	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	410	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TTGGCTTTTCGCATACCAAAG	0.448													41	105					0	0	1	0	0	
GAS2L3	283431	broad.mit.edu	37	12	101017768	101017768	+	Silent	SNP	G	A	A	rs61748062	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:101017768G>A	uc001thu.2	+	10	1411	c.1185G>A	c.(1183-1185)CCG>CCA	p.P395P	GAS2L3_uc009zty.2_Silent_p.P395P|GAS2L3_uc001thv.2_Silent_p.P291P	NM_174942	NP_777602	Q86XJ1	GA2L3_HUMAN	growth arrest-specific 2 like 3	395					cell cycle arrest					skin(1)	1						CGAAGAAACCGCAGGCTCCTT	0.418													50	100					0	0	1	0	0	
ANO4	121601	broad.mit.edu	37	12	101381342	101381342	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:101381342C>T	uc010svm.1	+	8	1200	c.628C>T	c.(628-630)CGG>TGG	p.R210W	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.R175W|ANO4_uc001thx.2_Missense_Mutation_p.R210W	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	210	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AAGCAGGTTTCGGAGATGGTT	0.507										HNSCC(74;0.22)	OREG0022059	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	120	257					0	0	1	0	0	
MYBPC1	4604	broad.mit.edu	37	12	102036355	102036355	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:102036355A>C	uc001tii.2	+	9	851	c.749A>C	c.(748-750)AAG>ACG	p.K250T	MYBPC1_uc001tif.1_Missense_Mutation_p.K263T|MYBPC1_uc001tig.2_Missense_Mutation_p.K275T|MYBPC1_uc010svq.1_Missense_Mutation_p.K237T|MYBPC1_uc001tih.2_Missense_Mutation_p.K275T|MYBPC1_uc001tij.2_Missense_Mutation_p.K250T|MYBPC1_uc010svr.1_Missense_Mutation_p.K250T|MYBPC1_uc010svs.1_Missense_Mutation_p.K250T|MYBPC1_uc010svt.1_Missense_Mutation_p.K238T|MYBPC1_uc010svu.1_Missense_Mutation_p.K231T|MYBPC1_uc001tik.2_Missense_Mutation_p.K224T	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	250					cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						GAGGAGAAGAAGAGCGCAGGT	0.632													4	18					0	0	1	0	0	
MYBPC1	4604	broad.mit.edu	37	12	102055019	102055019	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:102055019G>A	uc001tii.2	+	18	2038	c.1936G>A	c.(1936-1938)GAC>AAC	p.D646N	MYBPC1_uc001tig.2_Missense_Mutation_p.D671N|MYBPC1_uc010svq.1_Missense_Mutation_p.D633N|MYBPC1_uc001tih.2_Missense_Mutation_p.D671N|MYBPC1_uc001tij.2_Missense_Mutation_p.D646N|MYBPC1_uc010svr.1_Missense_Mutation_p.D646N|MYBPC1_uc010svs.1_Missense_Mutation_p.D646N|MYBPC1_uc010svt.1_Missense_Mutation_p.D634N|MYBPC1_uc010svu.1_Missense_Mutation_p.D627N|MYBPC1_uc001tik.2_Missense_Mutation_p.D620N	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	646	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						TCCTGCCTACGACGGAGGCTC	0.498													16	19					0	0	1	0	0	
DRAM1	55332	broad.mit.edu	37	12	102313940	102313940	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:102313940T>C	uc001tix.2	+	6	1096	c.633T>C	c.(631-633)GGT>GGC	p.G211G	DRAM1_uc010svv.1_Intron	NM_018370	NP_060840	Q8N682	DRAM1_HUMAN	DNA-damage regulated autophagy modulator 1	211	Helical; (Potential).				apoptosis|autophagy	integral to membrane|lysosomal membrane				ovary(1)	1						TGGCCTTTGGTTTTATTTTCT	0.333													30	50					0	0	1	0	0	
PAH	5053	broad.mit.edu	37	12	103240677	103240677	+	Missense_Mutation	SNP	G	A	A	rs62514958		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:103240677G>A	uc001tjq.1	-	10	1437	c.965C>T	c.(964-966)GCC>GTC	p.A322V		NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	322			A -> T (in PKU; haplotype 1).|A -> G (in PKU; haplotype 12).		catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	ACTTACTGTGGCGAGCTTTTC	0.493													23	48					0	0	1	0	0	
STAB2	55576	broad.mit.edu	37	12	103984697	103984697	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:103984697C>A	uc001tjw.2	+	2	290	c.104C>A	c.(103-105)TCT>TAT	p.S35Y		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	35	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GATAGGAAGTCTCTTCTTACA	0.433													39	72					7.04047e-22	8.37091e-22	1	1	0	
STAB2	55576	broad.mit.edu	37	12	104049338	104049338	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:104049338C>T	uc001tjw.2	+	15	1899	c.1713C>T	c.(1711-1713)CTC>CTT	p.L571L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	571	Extracellular (Potential).|FAS1 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ACGGCACTCTCGATTACCTCC	0.453													24	42					0	0	1	0	0	
STAB2	55576	broad.mit.edu	37	12	104089398	104089398	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:104089398A>G	uc001tjw.2	+	32	3632	c.3446A>G	c.(3445-3447)GAC>GGC	p.D1149G		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1149	Extracellular (Potential).|FAS1 4.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CAGATGCCTGACTATTCCATC	0.507													29	81					0	0	1	0	0	
STAB2	55576	broad.mit.edu	37	12	104098388	104098388	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:104098388C>A	uc001tjw.2	+	36	4082	c.3896C>A	c.(3895-3897)TCT>TAT	p.S1299Y		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1299	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GGAACTAAATCTCTAGTAAGT	0.368													11	30					6.40141e-05	6.56571e-05	1	1	0	
STAB2	55576	broad.mit.edu	37	12	104136216	104136216	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:104136216A>G	uc001tjw.2	+	56	6101	c.5915A>G	c.(5914-5916)AAC>AGC	p.N1972S	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1972	Extracellular (Potential).|Laminin EGF-like 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCGTGTAATAACCGGGGTGTC	0.562													44	103					0	0	1	0	0	
HSP90B1	7184	broad.mit.edu	37	12	104326616	104326616	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:104326616G>T	uc001tkb.1	+	4	412	c.307G>T	c.(307-309)GAA>TAA	p.E103*	HSP90B1_uc010swg.1_Intron|HSP90B1_uc009zui.1_Nonsense_Mutation_p.E103*|LOC253724_uc010swf.1_5'Flank|LOC253724_uc009zuh.2_5'Flank	NM_003299	NP_003290	P14625	ENPL_HUMAN	heat shock protein 90kDa beta, member 1	103					actin rod assembly|anti-apoptosis|cellular response to ATP|ER-associated protein catabolic process|protein folding|protein transport|regulation of phosphoprotein phosphatase activity|response to hypoxia|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|melanosome|microsome|midbody|perinuclear region of cytoplasm	ATP binding|calcium ion binding|low-density lipoprotein particle receptor binding|protein phosphatase binding|RNA binding|unfolded protein binding|virion binding			ovary(2)|skin(1)	3					Rifabutin(DB00615)	TTTCCTGAGAGAACTGATTTC	0.343													50	107					7.36392e-32	9.02667e-32	1	1	0	
EID3	493861	broad.mit.edu	37	12	104697977	104697977	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:104697977G>A	uc001tkw.2	+	1	429	c.265G>A	c.(265-267)GAC>AAC	p.D89N	TXNRD1_uc010swk.1_Intron|TXNRD1_uc010swl.1_Intron|TXNRD1_uc010swm.1_Intron|TXNRD1_uc010swn.1_Intron|TXNRD1_uc010swo.1_Intron|TXNRD1_uc010swp.1_Intron|TXNRD1_uc010swq.1_Intron|TXNRD1_uc001tku.2_Intron|TXNRD1_uc001tko.1_Intron|TXNRD1_uc001tkp.1_Intron|TXNRD1_uc001tkv.1_Intron	NM_001008394	NP_001008395	Q8N140	EID3_HUMAN	EP300 interacting inhibitor of differentiation	89					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus					0						AGCAGCCCTCGACGCCCGGTT	0.483													47	85					0	0	1	0	0	
ALDH1L2	160428	broad.mit.edu	37	12	105462629	105462629	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:105462629A>C	uc001tlc.2	-	4	589	c.462T>G	c.(460-462)TTT>TTG	p.F154L	ALDH1L2_uc009zuo.2_5'Flank|ALDH1L2_uc009zup.2_RNA	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	154	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						AGAAAACAGAAAACCCAGCTT	0.363													26	61					0	0	1	0	0	
KIAA1033	23325	broad.mit.edu	37	12	105543428	105543428	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:105543428C>A	uc001tld.2	+	25	2637	c.2550C>A	c.(2548-2550)TTC>TTA	p.F850L	KIAA1033_uc010swr.1_Missense_Mutation_p.F851L|KIAA1033_uc010sws.1_Missense_Mutation_p.F662L	NM_015275	NP_056090	Q2M389	WAHS7_HUMAN	hypothetical protein LOC23325	850					endosome transport	WASH complex				kidney(1)|central_nervous_system(1)	2						AAAAGAAGTTCTATATATTTA	0.199													20	54					1.56452e-12	1.73502e-12	1	1	0	
NUAK1	9891	broad.mit.edu	37	12	106460770	106460770	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:106460770C>T	uc001tlj.1	-	7	3176	c.1796G>A	c.(1795-1797)CGC>CAC	p.R599H		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	599							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						GACGCAGCTGCGGATGCGCTG	0.617													21	38					0	0	1	0	0	
NUAK1	9891	broad.mit.edu	37	12	106461428	106461428	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:106461428A>C	uc001tlj.1	-	7	2518	c.1138T>G	c.(1138-1140)TCT>GCT	p.S380A		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	380							ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						TCCTGACCAGACTGAGCAAAG	0.537													26	79					0	0	1	0	0	
MTERFD3	80298	broad.mit.edu	37	12	107372416	107372416	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:107372416T>C	uc001tme.1	-	2	1896	c.77A>G	c.(76-78)TAC>TGC	p.Y26C	MTERFD3_uc001tmf.1_Missense_Mutation_p.Y26C|MTERFD3_uc001tmg.1_Missense_Mutation_p.Y26C|MTERFD3_uc001tmh.1_Missense_Mutation_p.Y26C	NM_025198	NP_079474	Q49AM1	MTER3_HUMAN	transcription termination factor-like protein	26					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial nucleoid	transcription regulatory region DNA binding				0						GAAAGGTCTGTATTTTGGAGG	0.418													26	60					0	0	1	0	0	
CRY1	1407	broad.mit.edu	37	12	107395696	107395696	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:107395696A>G	uc001tmi.3	-	4	1300	c.441T>C	c.(439-441)CCT>CCC	p.P147P		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	147	DNA photolyase.				DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						TATAAGTTAGAGGCGGTTGTC	0.353													36	81					0	0	1	0	0	
PRDM4	11108	broad.mit.edu	37	12	108128239	108128239	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:108128239C>T	uc001tmp.2	-	12	2591	c.2154G>A	c.(2152-2154)AAG>AAA	p.K718K	PRDM4_uc010sww.1_Silent_p.K125K|PRDM4_uc001tmq.2_RNA	NM_012406	NP_036538	Q9UKN5	PRDM4_HUMAN	PR domain containing 4	718	C2H2-type 5.				cell proliferation|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						TGAGATGCTTCTTTAAGTGAT	0.393													67	143					0	0	1	0	0	
WSCD2	9671	broad.mit.edu	37	12	108626627	108626627	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:108626627T>G	uc001tms.2	+	7	1843	c.1099T>G	c.(1099-1101)TTC>GTC	p.F367V	WSCD2_uc001tmt.2_Missense_Mutation_p.F367V|WSCD2_uc001tmu.2_Missense_Mutation_p.F115V	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	367						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						GGCCACAGGCTTCTACACTGG	0.582													21	39					0	0	1	0	0	
DAO	1610	broad.mit.edu	37	12	109283296	109283296	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:109283296G>T	uc001tnr.3	+	4	514	c.361G>T	c.(361-363)GAG>TAG	p.E121*	DAO_uc001tnq.3_Intron|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	121					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						GACCCCCAGAGAGCTGGATAT	0.542													28	54					4.66903e-05	4.79367e-05	1	1	0	
ACACB	32	broad.mit.edu	37	12	109613808	109613808	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:109613808A>G	uc001tob.2	+	8	1408	c.1289A>G	c.(1288-1290)GAC>GGC	p.D430G	ACACB_uc001toc.2_Missense_Mutation_p.D430G	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	430	Biotin carboxylation.|ATP-grasp.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GATGTTTATGACAAGGGTTGC	0.527													26	86					0	0	1	0	0	
ACACB	32	broad.mit.edu	37	12	109613968	109613968	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:109613968G>T	uc001tob.2	+	9	1456	c.1337G>T	c.(1336-1338)AGA>ATA	p.R446I	ACACB_uc001toc.2_Missense_Mutation_p.R446I	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	446	Biotin carboxylation.|ATP-grasp.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GCAGCAGAAAGAATTGGTTTT	0.527													126	285					6.82392e-85	8.52808e-85	1	1	0	
ACACB	32	broad.mit.edu	37	12	109684234	109684234	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:109684234A>G	uc001tob.2	+	39	5671	c.5552A>G	c.(5551-5553)GAC>GGC	p.D1851G	ACACB_uc001toc.2_Missense_Mutation_p.D1851G|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.D517G	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1851	Carboxyltransferase.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GCTTGGGTGGACCCAGAAGAC	0.552													28	62					0	0	1	0	0	
FOXN4	121643	broad.mit.edu	37	12	109719237	109719237	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:109719237C>T	uc001toe.3	-	9	1374	c.1269G>A	c.(1267-1269)CCG>CCA	p.P423P	FOXN4_uc009zvg.2_Silent_p.P220P|FOXN4_uc001tof.3_Silent_p.P243P	NM_213596	NP_998761	Q96NZ1	FOXN4_HUMAN	forkhead box N4	423					axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)|lung(1)	2						CCATGATGCTCGGGTCGAGGG	0.627													25	66					0	0	1	0	0	
TRPV4	59341	broad.mit.edu	37	12	110252352	110252352	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:110252352C>T	uc001tpj.1	-	1	345	c.250G>A	c.(250-252)GAT>AAT	p.D84N	TRPV4_uc001tpg.1_Missense_Mutation_p.D50N|TRPV4_uc001tph.1_Missense_Mutation_p.D84N|TRPV4_uc001tpi.1_Missense_Mutation_p.D84N|TRPV4_uc001tpk.1_Missense_Mutation_p.D84N|TRPV4_uc001tpl.1_Missense_Mutation_p.D84N	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	84	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TCCAGCAGATCGATGGGGTTG	0.617													11	34					0	0	1	0	0	
ANKRD13A	88455	broad.mit.edu	37	12	110461908	110461908	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:110461908C>T	uc001tpx.2	+	7	1051	c.792C>T	c.(790-792)TAC>TAT	p.Y264Y	ANKRD13A_uc009zvl.1_Intron|ANKRD13A_uc010sxw.1_Silent_p.Y264Y|ANKRD13A_uc001tpy.2_5'Flank	NM_033121	NP_149112	Q8IZ07	AN13A_HUMAN	ankyrin repeat domain 13	264											0						TTAATGGTTACGAAGCAAAGG	0.343													44	122					0	0	1	0	0	
ATP2A2	488	broad.mit.edu	37	12	110780120	110780120	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:110780120G>A	uc001tqk.3	+	15	2748	c.2185G>A	c.(2185-2187)GCC>ACC	p.A729T	ATP2A2_uc001tql.3_Missense_Mutation_p.A729T|ATP2A2_uc010sxy.1_Missense_Mutation_p.A702T	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	729	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						GGCTAAAACCGCCTCTGAGAT	0.547													33	73					0	0	1	0	0	
MYL2	4633	broad.mit.edu	37	12	111352028	111352028	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:111352028A>C	uc001try.3	-	4	307	c.236T>G	c.(235-237)TTT>TGT	p.F79C	MYL2_uc001trx.3_Missense_Mutation_p.F60C	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2	79					cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						GAACACAGTAAAGTTAATTGG	0.398													34	48					0	0	1	0	0	
MYL2	4633	broad.mit.edu	37	12	111356915	111356915	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:111356915A>C	uc001try.3	-	2	157	c.86T>G	c.(85-87)TTT>TGT	p.F29C	MYL2_uc001trx.3_Missense_Mutation_p.F10C	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2	29	EF-hand 1.				cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						CACCTCCTTAAATTCCTGGAT	0.512													28	24					0	0	1	0	0	
CUX2	23316	broad.mit.edu	37	12	111749952	111749952	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:111749952C>T	uc001tsa.1	+	16	2102	c.1949C>T	c.(1948-1950)GCC>GTC	p.A650V		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	650						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TCAGACGACGCCATCAAGAGC	0.617													6	16					0	0	1	0	0	
C12orf51	283450	broad.mit.edu	37	12	112667668	112667668	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:112667668A>C	uc009zwc.2	-	34	5105	c.5087T>G	c.(5086-5088)CTG>CGG	p.L1696R	C12orf51_uc001ttr.1_5'Flank	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						AATGTACATCAGTGCTCTAGA	0.453													13	35					0	0	1	0	0	
C12orf51	283450	broad.mit.edu	37	12	112721041	112721041	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:112721041G>A	uc009zwc.2	-	2	237	c.219C>T	c.(217-219)GGC>GGT	p.G73G		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TGGCAGATTCGCCCTCTTTTC	0.428													17	28					0	0	1	0	0	
PTPN11	5781	broad.mit.edu	37	12	112939971	112939971	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:112939971A>C	uc001ttx.2	+	14	2003	c.1623A>C	c.(1621-1623)GAA>GAC	p.E541D		NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	545					axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding			haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						AAGGGCACGAATATACAAATA	0.448			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				38	77					0	0	1	0	0	
OAS1	4938	broad.mit.edu	37	12	113346601	113346601	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:113346601C>T	uc001tud.2	+	2	547	c.441C>T	c.(439-441)TTC>TTT	p.F147F	OAS1_uc010syn.1_Silent_p.F146F|OAS1_uc010syo.1_Silent_p.F146F|OAS1_uc001tub.2_Silent_p.F147F|OAS1_uc001tuc.2_Silent_p.F147F|OAS1_uc009zwf.2_Silent_p.F146F	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	147	Necessary for binding to dsRNA.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						GGGTGGAGTTCGATGTGCTGC	0.567													36	82					0	0	1	0	0	
OAS3	4940	broad.mit.edu	37	12	113384669	113384669	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:113384669G>A	uc001tug.2	+	4	845	c.758G>A	c.(757-759)CGA>CAA	p.R253Q		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	253	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						GAAGGCCTCCGAACTGTCCTG	0.577													17	28					0	0	1	0	0	
OAS2	4939	broad.mit.edu	37	12	113416560	113416560	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:113416560A>G	uc001tuj.2	+	1	287	c.147A>G	c.(145-147)GAA>GAG	p.E49E	OAS2_uc001tuh.2_Silent_p.E49E|OAS2_uc001tui.1_Silent_p.E49E	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	49	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						AGGAACCCGAACAGTTCCCCC	0.572													10	39					0	0	1	0	0	
PLBD2	196463	broad.mit.edu	37	12	113812324	113812324	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:113812324G>A	uc001tve.2	+	4	624	c.589G>A	c.(589-591)GAA>AAA	p.E197K	PLBD2_uc001tvf.2_Missense_Mutation_p.E197K	NM_173542	NP_775813	Q8NHP8	PLBL2_HUMAN	phospholipase B domain containing 2 isoform 1	197					lipid catabolic process	lysosomal lumen	hydrolase activity				0						GGACAGCTACGAAGGCCGTGT	0.547													6	7					0	0	1	0	0	
TBX5	6910	broad.mit.edu	37	12	114832669	114832669	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:114832669C>T	uc001tvo.2	-	6	1035	c.540G>A	c.(538-540)CAG>CAA	p.Q180Q	TBX5_uc001tvp.2_Silent_p.Q180Q|TBX5_uc001tvq.2_Silent_p.Q130Q|TBX5_uc010syv.1_Silent_p.Q180Q	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	180	T-box.				cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		GTAATCTAGGCTGGTATTTGT	0.363													67	173					0	0	1	0	0	
MED13L	23389	broad.mit.edu	37	12	116425055	116425055	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:116425055G>A	uc001tvw.2	-	18	4028	c.3973C>T	c.(3973-3975)CGT>TGT	p.R1325C		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1325					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		AACAGCATACGAACCACATCC	0.552													24	30					0	0	1	0	0	
NCRNA00173	100287569	broad.mit.edu	37	12	116972465	116972465	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:116972465G>A	uc001tvx.1	+	2		c.736G>A			NCRNA00173_uc001tvy.2_Intron	NR_027345				Homo sapiens cDNA FLJ42957 fis, clone BRSTN2010500.												0						GATGATTACAGTCTGTGTTTG	0.443													17	42					0	0	1	0	0	
C12orf49	79794	broad.mit.edu	37	12	117158242	117158242	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:117158242G>A	uc001tvz.1	-	3	417	c.279C>T	c.(277-279)TGC>TGT	p.C93C	C12orf49_uc009zwm.1_Silent_p.C63C	NM_024738	NP_079014	Q9H741	CL049_HUMAN	hypothetical protein LOC79794 precursor	93						extracellular region				ovary(1)	1	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0281)		CCTTCCTCTCGCAAACGTAGC	0.532													55	117					0	0	1	0	0	
NOS1	4842	broad.mit.edu	37	12	117685282	117685282	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:117685282G>A	uc001twm.1	-	18	3380	c.2694C>T	c.(2692-2694)TGC>TGT	p.C898C		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	898	FMN (By similarity).|Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GTCCGAAGGCGCAAAAGTGAG	0.557													17	41					0	0	1	0	0	
NOS1	4842	broad.mit.edu	37	12	117691546	117691546	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:117691546G>A	uc001twm.1	-	17	3231	c.2545C>T	c.(2545-2547)CGA>TGA	p.R849*	NOS1_uc001twn.1_Nonsense_Mutation_p.R53*	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	849	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CTGTTGAATCGGACCTTGTAG	0.542													33	67					0	0	1	0	0	
NOS1	4842	broad.mit.edu	37	12	117723132	117723132	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:117723132G>A	uc001twm.1	-	7	1982	c.1296C>T	c.(1294-1296)TTC>TTT	p.F432F		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	432					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CACGGGCATCGAATACCTGGA	0.552													8	18					0	0	1	0	0	
RFC5	5985	broad.mit.edu	37	12	118467596	118467596	+	Nonsense_Mutation	SNP	C	T	T	rs141299152		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:118467596C>T	uc001twq.2	+	10	1017	c.892C>T	c.(892-894)CGA>TGA	p.R298*	RFC5_uc010syx.1_Nonsense_Mutation_p.R277*|RFC5_uc010syy.1_Nonsense_Mutation_p.R277*|RFC5_uc010syz.1_Nonsense_Mutation_p.R213*|RFC5_uc009zwr.2_Nonsense_Mutation_p.R295*	NM_007370	NP_031396	P40937	RFC5_HUMAN	replication factor C 5 isoform 1	298					cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ATCTTCAGTTCGAATACATTT	0.363													45	109					0	0	1	0	0	
SUDS3	64426	broad.mit.edu	37	12	118828948	118828948	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:118828948A>C	uc001twz.2	+	6	517	c.378A>C	c.(376-378)CGA>CGC	p.R126R		NM_022491	NP_071936	Q9H7L9	SDS3_HUMAN	suppressor of defective silencing 3	126	Potential.				chromatin modification|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	Sin3 complex	histone deacetylase binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAGTGGAACGAAATTACATTA	0.448													9	89					0	0	1	0	0	
CCDC60	160777	broad.mit.edu	37	12	119943093	119943093	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:119943093G>T	uc001txe.2	+	7	1333	c.868G>T	c.(868-870)GAA>TAA	p.E290*	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	290										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GCCAGATGAAGAACCTCTGTA	0.502													55	110					6.9144e-35	8.52411e-35	1	1	0	
CIT	11113	broad.mit.edu	37	12	120204980	120204980	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:120204980C>T	uc001txi.1	-	18	2142	c.2089G>A	c.(2089-2091)GAA>AAA	p.E697K	CIT_uc001txh.1_Missense_Mutation_p.E231K|CIT_uc001txj.1_Missense_Mutation_p.E739K	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	697	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		TGTTTCTCTTCGAGCTCCTAG	0.473													45	102					0	0	1	0	0	
MSI1	4440	broad.mit.edu	37	12	120795629	120795629	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:120795629T>C	uc001tye.1	-	8	588	c.524A>G	c.(523-525)AAC>AGC	p.N175S		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	175	RRM 2.				nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CATTTTGTTGTTGATTTCATG	0.254													13	25					0	0	1	0	0	
OASL	8638	broad.mit.edu	37	12	121458569	121458569	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:121458569G>A	uc001tzj.1	-	6	1346	c.1340C>T	c.(1339-1341)GCC>GTC	p.A447V	OASL_uc001tzk.1_3'UTR	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	447	Ubiquitin-like 2.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GATGGCATAGGCGTAGCTCCC	0.532													38	76					0	0	1	0	0	
P2RX4	5025	broad.mit.edu	37	12	121666569	121666569	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:121666569C>T	uc001tzr.2	+	7	951	c.647C>T	c.(646-648)TCG>TTG	p.S216L	P2RX4_uc010szr.1_RNA|P2RX4_uc010szs.1_RNA|P2RX4_uc009zxc.2_Missense_Mutation_p.S189L|P2RX4_uc001tzs.2_Missense_Mutation_p.S232L|P2RX4_uc009zxb.2_RNA|P2RX4_uc010szt.1_Missense_Mutation_p.S115L	NM_002560	NP_002551	Q99571	P2RX4_HUMAN	purinergic receptor P2X4	216	Extracellular (Potential).				endothelial cell activation|negative regulation of cardiac muscle hypertrophy|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|regulation of apoptosis|regulation of blood pressure|regulation of sodium ion transport|relaxation of cardiac muscle|response to ATP|response to fluid shear stress|sensory perception of pain|tissue homeostasis	cell junction|perinuclear region of cytoplasm	cadherin binding|copper ion binding|extracellular ATP-gated cation channel activity|protein homodimerization activity|purinergic nucleotide receptor activity|receptor binding|zinc ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TACCTCAAGTCGTGCATTTAT	0.473													45	84					0	0	1	0	0	
P2RX4	5025	broad.mit.edu	37	12	121666584	121666584	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:121666584C>T	uc001tzr.2	+	7	966	c.662C>T	c.(661-663)GCT>GTT	p.A221V	P2RX4_uc010szr.1_RNA|P2RX4_uc010szs.1_RNA|P2RX4_uc009zxc.2_Missense_Mutation_p.A194V|P2RX4_uc001tzs.2_Missense_Mutation_p.A237V|P2RX4_uc009zxb.2_RNA|P2RX4_uc010szt.1_Missense_Mutation_p.A120V	NM_002560	NP_002551	Q99571	P2RX4_HUMAN	purinergic receptor P2X4	221	Extracellular (Potential).				endothelial cell activation|negative regulation of cardiac muscle hypertrophy|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|regulation of apoptosis|regulation of blood pressure|regulation of sodium ion transport|relaxation of cardiac muscle|response to ATP|response to fluid shear stress|sensory perception of pain|tissue homeostasis	cell junction|perinuclear region of cytoplasm	cadherin binding|copper ion binding|extracellular ATP-gated cation channel activity|protein homodimerization activity|purinergic nucleotide receptor activity|receptor binding|zinc ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					ATTTATGATGCTAAAACAGAT	0.498													39	79					0	0	1	0	0	
MORN3	283385	broad.mit.edu	37	12	122097145	122097145	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:122097145T>C	uc001uax.2	-	2	426	c.255A>G	c.(253-255)GGA>GGG	p.G85G	MORN3_uc001uay.2_RNA	NM_173855	NP_776254	Q6PF18	MORN3_HUMAN	MORN repeat containing 3	85											0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000409)|Epithelial(86;0.00145)		TCCTGCACTTTCCTGTCTGTT	0.483													32	64					0	0	1	0	0	
LRRC43	254050	broad.mit.edu	37	12	122685454	122685454	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:122685454G>A	uc009zxm.2	+	10	1807	c.1782G>A	c.(1780-1782)TTG>TTA	p.L594L	LRRC43_uc001ubw.3_Silent_p.L409L|LRRC43_uc009zxn.2_Silent_p.L355L|B3GNT4_uc001ubx.2_5'Flank|B3GNT4_uc001uby.2_5'Flank	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	594											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		TCCGCACATTGACATCTGACA	0.682													26	53					0	0	1	0	0	
VPS33A	65082	broad.mit.edu	37	12	122748207	122748207	+	Missense_Mutation	SNP	G	A	A	rs150472752		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:122748207G>A	uc001ucd.2	-	3	321	c.208C>T	c.(208-210)CGT>TGT	p.R70C	VPS33A_uc001ucc.2_RNA|VPS33A_uc001uce.2_Missense_Mutation_p.R70C	NM_022916	NP_075067	Q96AX1	VP33A_HUMAN	vacuolar protein sorting 33A	70					lysosome localization|melanosome localization|platelet formation|protein transport|regulation of developmental pigmentation|vesicle docking involved in exocytosis	early endosome|late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm	protein binding			skin(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000336)|Epithelial(86;0.000606)|BRCA - Breast invasive adenocarcinoma(302;0.23)		GCCGGCAAACGATTTCCTTTA	0.373													21	45					0	0	1	0	0	
CLIP1	6249	broad.mit.edu	37	12	122757586	122757586	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:122757586A>C	uc001ucg.1	-	25	4259	c.4153T>G	c.(4153-4155)TTT>GTT	p.F1385V	CLIP1_uc001uch.1_Missense_Mutation_p.F1374V|CLIP1_uc001uci.1_Missense_Mutation_p.F1339V|CLIP1_uc001ucf.1_Missense_Mutation_p.F44V	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1385					mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		TGGAGATCAAAGCAGTCACAA	0.473													15	55					0	0	1	0	0	
RSRC2	65117	broad.mit.edu	37	12	123001843	123001843	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:123001843G>A	uc001ucr.2	-	5	679	c.533C>T	c.(532-534)TCT>TTT	p.S178F	RSRC2_uc001uco.2_5'UTR|RSRC2_uc001ucp.2_Missense_Mutation_p.S119F|RSRC2_uc001ucq.2_5'UTR|RSRC2_uc001ucs.2_5'UTR|RSRC2_uc001uct.2_Missense_Mutation_p.S130F|RSRC2_uc001ucu.2_Missense_Mutation_p.S178F	NM_023012	NP_075388	Q7L4I2	RSRC2_HUMAN	arginine/serine-rich coiled-coil 2 isoform a	178	Ser-rich.									ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.14e-05)|Epithelial(86;0.000183)|BRCA - Breast invasive adenocarcinoma(302;0.201)		GCGGGAACGAGACCTGATCCG	0.488													49	86					0	0	1	0	0	
KNTC1	9735	broad.mit.edu	37	12	123075984	123075984	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:123075984G>A	uc001ucv.2	+	42	4392	c.4229G>A	c.(4228-4230)CGT>CAT	p.R1410H	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	1410					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		tGGGGCATTCGTCTTGGTAAA	0.294													63	125					0	0	1	0	0	
KNTC1	9735	broad.mit.edu	37	12	123097759	123097759	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:123097759A>C	uc001ucv.2	+	54	5886	c.5723A>C	c.(5722-5724)AAA>ACA	p.K1908T	KNTC1_uc010taf.1_Missense_Mutation_p.K833T	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	1908					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		CTCTTTAAAAAACCCATTGAA	0.343													38	62					0	0	1	0	0	
GPR109A	338442	broad.mit.edu	37	12	123186857	123186857	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:123186857C>T	uc001ucx.1	-	1	1048	c.974G>A	c.(973-975)CGC>CAC	p.R325H	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	325	Cytoplasmic (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	GCTCGTGCTGCGGTTATTATC	0.557													19	152					0	0	1	0	0	
GPR109B	8843	broad.mit.edu	37	12	123200148	123200148	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:123200148C>A	uc001ucy.3	-	1	1292	c.1137G>T	c.(1135-1137)GAG>GAT	p.E379D	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	379	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	CCAACTGTTTCTCCAGAGATG	0.498													57	126					1.81848e-46	2.26089e-46	1	1	0	
GPR109B	8843	broad.mit.edu	37	12	123200311	123200311	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:123200311C>T	uc001ucy.3	-	1	1129	c.974G>A	c.(973-975)CGC>CAC	p.R325H	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	325	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	GCTCGTGCTGCGGTTATTATC	0.552													11	30					0	0	1	0	0	
HIP1R	9026	broad.mit.edu	37	12	123333139	123333139	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:123333139G>A	uc001udj.1	+	3	343	c.284G>A	c.(283-285)CGA>CAA	p.R95Q	HIP1R_uc001udg.1_Missense_Mutation_p.R83Q|HIP1R_uc001udi.1_Missense_Mutation_p.R95Q|HIP1R_uc001udh.2_Missense_Mutation_p.R95Q	NM_003959	NP_003950	O75146	HIP1R_HUMAN	huntingtin interacting protein-1-related	95	ENTH.				receptor-mediated endocytosis	clathrin coated vesicle membrane|coated pit|perinuclear region of cytoplasm	actin binding|phosphatidylinositol binding			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;4.6e-05)|Epithelial(86;0.000119)|BRCA - Breast invasive adenocarcinoma(302;0.2)		AAGGTCCTTCGAGACGGGCAC	0.647													28	40					0	0	1	0	0	
MPHOSPH9	10198	broad.mit.edu	37	12	123649915	123649915	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:123649915C>A	uc001uel.2	-	14	2352	c.2245G>T	c.(2245-2247)GAA>TAA	p.E749*	MPHOSPH9_uc010tal.1_Nonsense_Mutation_p.E203*|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_Nonsense_Mutation_p.E203*	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	749					M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		TCATCAAGTTCTTTTAAAGCT	0.378													45	85					1.06522e-23	1.27633e-23	1	1	0	
RILPL1	353116	broad.mit.edu	37	12	123984017	123984017	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:123984017T>G	uc001ufe.2	-	3	763	c.527A>C	c.(526-528)GAG>GCG	p.E176A	RILPL1_uc001ufd.2_Missense_Mutation_p.E25A|RILPL1_uc010tas.1_Missense_Mutation_p.E176A	NM_178314	NP_847884	Q5EBL4	RIPL1_HUMAN	Rab interacting lysosomal protein-like 1	176	Potential.				neuroprotection	cytosol					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000224)|Epithelial(86;0.00067)|all cancers(50;0.00836)|BRCA - Breast invasive adenocarcinoma(302;0.197)		GGCGCGGATCTCGTCGCGTTG	0.617													31	43					0	0	1	0	0	
TMED2	10959	broad.mit.edu	37	12	124074954	124074954	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:124074954G>A	uc001ufg.2	+	3	547	c.439G>A	c.(439-441)GAA>AAA	p.E147K		NM_006815	NP_006806	Q15363	TMED2_HUMAN	coated vesicle membrane protein precursor	147	Lumenal (Potential).				protein transport|vesicle-mediated transport	COPI coated vesicle membrane|ER-Golgi intermediate compartment|integral to membrane|microsome|zymogen granule membrane	protein binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000138)|Epithelial(86;0.000613)|all cancers(50;0.00745)		TGTAAAGCACGAACAGGAATA	0.433													14	26					0	0	1	0	0	
DNAH10	196385	broad.mit.edu	37	12	124257443	124257443	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:124257443G>T	uc001uft.3	+	4	301	c.276G>T	c.(274-276)GAG>GAT	p.E92D		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	92	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTCTTCCCGAGGAGTTCCTGG	0.463													56	85					8.4772e-36	1.04649e-35	1	1	0	
DNAH10	196385	broad.mit.edu	37	12	124323173	124323173	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:124323173C>T	uc001uft.3	+	28	4744	c.4719C>T	c.(4717-4719)GAC>GAT	p.D1573D		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1573	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCATTTCTGACGATGAGTTGC	0.527													43	90					0	0	1	0	0	
DNAH10	196385	broad.mit.edu	37	12	124330340	124330340	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:124330340G>A	uc001uft.3	+	30	5225	c.5200G>A	c.(5200-5202)GAC>AAC	p.D1734N		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1734	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AAGCAAAAACGACAGGAAAAA	0.473													30	85					0	0	1	0	0	
DNAH10	196385	broad.mit.edu	37	12	124333363	124333363	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:124333363C>A	uc001uft.3	+	33	5707	c.5682C>A	c.(5680-5682)CTC>CTA	p.L1894L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1894	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTTCTGTGCTCTCCGTGATCT	0.542													11	26					1.58986e-06	1.65575e-06	1	1	0	
DNAH10	196385	broad.mit.edu	37	12	124345647	124345647	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:124345647G>T	uc001uft.3	+	38	6509	c.6484G>T	c.(6484-6486)GAC>TAC	p.D2162Y		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2162	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AACCACCCGAGACTGGACAGA	0.488													6	41					0.00116845	0.00118508	1	1	0	
DNAH10	196385	broad.mit.edu	37	12	124377783	124377783	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:124377783T>G	uc001uft.3	+	52	8670	c.8645T>G	c.(8644-8646)ATT>AGT	p.I2882S		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2882	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TTTCCAGGAATTGTACCTGCG	0.512													16	18					0	0	1	0	0	
DNAH10	196385	broad.mit.edu	37	12	124377848	124377848	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:124377848C>T	uc001uft.3	+	52	8735	c.8710C>T	c.(8710-8712)CTG>TTG	p.L2904L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2904	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ACAGGAAGCTCTGAAGCAAGG	0.502													28	40					0	0	1	0	0	
NCOR2	9612	broad.mit.edu	37	12	124870323	124870323	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:124870323C>T	uc010tba.1	-	17	2104	c.1987G>A	c.(1987-1989)GAT>AAT	p.D663N	NCOR2_uc010tay.1_Missense_Mutation_p.D663N|NCOR2_uc010taz.1_Missense_Mutation_p.D663N|NCOR2_uc010tbb.1_Missense_Mutation_p.D663N|NCOR2_uc010tbc.1_Missense_Mutation_p.D662N|NCOR2_uc001ugj.1_Missense_Mutation_p.D663N	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	663					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		AAGATCTCATCGAGGTTCTGC	0.592													52	87					0	0	1	0	0	
AACS	65985	broad.mit.edu	37	12	125613907	125613907	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:125613907G>A	uc001uhc.2	+	14	1656	c.1450G>A	c.(1450-1452)GAG>AAG	p.E484K	AACS_uc001uhd.2_Missense_Mutation_p.E484K|AACS_uc009zyh.2_Intron|AACS_uc009zyi.2_Missense_Mutation_p.E82K	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	484					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		AGAGAGCGGCGAGCTGGTGTG	0.527													69	133					0	0	1	0	0	
AACS	65985	broad.mit.edu	37	12	125626770	125626770	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:125626770T>G	uc001uhc.2	+	18	2220	c.2014T>G	c.(2014-2016)TTC>GTC	p.F672V	AACS_uc001uhd.2_3'UTR|AACS_uc009zyh.2_RNA|AACS_uc009zyi.2_Missense_Mutation_p.F270V	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	672					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		GCTGCAGGGCTTCTGAGTCAG	0.527													23	54					0	0	1	0	0	
FZD10	11211	broad.mit.edu	37	12	130648529	130648529	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:130648529G>A	uc001uii.2	+	1	1498	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	348	Cytoplasmic (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		CGAGGCCATCGAAGCCAACAG	0.657													26	34					0	0	1	0	0	
STX2	2054	broad.mit.edu	37	12	131297517	131297517	+	Nonsense_Mutation	SNP	G	A	A	rs146831527		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:131297517G>A	uc001uio.2	-	4	432	c.265C>T	c.(265-267)CGA>TGA	p.R89*	STX2_uc001uip.2_Nonsense_Mutation_p.R89*|STX2_uc010tbj.1_Nonsense_Mutation_p.R89*	NM_194356	NP_919337	P32856	STX2_HUMAN	syntaxin 2 isoform 2	89	Potential.|Cytoplasmic (Potential).			R -> A (in Ref. 1; BAA03436).	acrosome reaction|ectoderm development|intracellular protein transport|organ morphogenesis|signal transduction	basolateral plasma membrane|integral to membrane|microsome|soluble fraction	calcium-dependent protein binding|SNAP receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.79e-06)|all cancers(50;5.27e-05)|Epithelial(86;5.29e-05)		AACTTGGCTCGAATTTTATTC	0.244													31	59					0	0	1	0	0	
RAN	5901	broad.mit.edu	37	12	131359262	131359262	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:131359262G>A	uc001uir.2	+	5	484	c.419G>A	c.(418-420)CGA>CAA	p.R140Q	RAN_uc010tbk.1_Missense_Mutation_p.R52Q|RAN_uc010tbl.1_Missense_Mutation_p.R52Q|RAN_uc001uis.2_Missense_Mutation_p.R160Q	NM_006325	NP_006316	P62826	RAN_HUMAN	ras-related nuclear protein	140					androgen receptor signaling pathway|cell division|DNA metabolic process|mitosis|mitotic spindle organization|positive regulation of transcription, DNA-dependent|protein export from nucleus|RNA export from nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|melanosome|nuclear pore|nucleoplasm	androgen receptor binding|chromatin binding|GTP binding|GTPase activity|transcription coactivator activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	Lung NSC(355;7.46e-07)|all_epithelial(31;7.36e-06)		OV - Ovarian serous cystadenocarcinoma(86;9.18e-49)|Epithelial(86;1.42e-45)|all cancers(50;6.28e-40)		GTCTTCCACCGAAAGAAGAAT	0.378													23	61					0	0	1	0	0	
PUS1	80324	broad.mit.edu	37	12	132416843	132416843	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:132416843G>A	uc001ujf.2	+	3	906	c.427G>A	c.(427-429)GCC>ACC	p.A143T	PUS1_uc001ujg.2_Missense_Mutation_p.A115T|PUS1_uc001ujh.2_Missense_Mutation_p.A115T|PUS1_uc001uji.2_Missense_Mutation_p.A90T	NM_025215	NP_079491	Q9Y606	TRUA_HUMAN	pseudouridine synthase 1 isoform 1	143						mitochondrion	pseudouridine synthase activity|pseudouridylate synthase activity|RNA binding			breast(1)|central_nervous_system(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.05e-08)|Epithelial(86;2.51e-07)|all cancers(50;2.94e-07)		CCAGCGCTGCGCCCGGACAGA	0.562													22	33					0	0	1	0	0	
EP400	57634	broad.mit.edu	37	12	132464278	132464278	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:132464278A>C	uc001ujn.2	+	2	1410	c.1375A>C	c.(1375-1377)AGC>CGC	p.S459R	EP400_uc001ujl.2_Missense_Mutation_p.S458R|EP400_uc001ujm.2_Missense_Mutation_p.S459R|EP400_uc001ujj.1_Missense_Mutation_p.S458R|EP400_uc001ujk.2_Missense_Mutation_p.S495R	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	495					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		AGGGGCCGGAAGCACAGTAGA	0.557													7	25					0	0	1	0	0	
EP400	57634	broad.mit.edu	37	12	132510285	132510285	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:132510285G>A	uc001ujn.2	+	24	4985	c.4950G>A	c.(4948-4950)GTG>GTA	p.V1650V	EP400_uc001ujl.2_Silent_p.V1649V|EP400_uc001ujm.2_Silent_p.V1569V	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	1686					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CGGGCGCTGTGCACGGCGCCC	0.697													8	17					0	0	1	0	0	
POLE	5426	broad.mit.edu	37	12	133209378	133209378	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:133209378T>C	uc001uks.1	-	44	6052	c.6008A>G	c.(6007-6009)TAC>TGC	p.Y2003C	POLE_uc001ukq.1_Missense_Mutation_p.Y213C|POLE_uc001ukr.1_Missense_Mutation_p.Y807C|POLE_uc010tbq.1_RNA	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	2003					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GGCCACGATGTACGCTGTGGA	0.637								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					20	48					0	0	1	0	0	
POLE	5426	broad.mit.edu	37	12	133250289	133250289	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:133250289C>A	uc001uks.1	-	13	1275	c.1231G>T	c.(1231-1233)GTG>TTG	p.V411L	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.V384L	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	411					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		TCCCTCTTCACCCACCTGGAA	0.557								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					70	147					1.43675e-24	1.72731e-24	1	1	0	
ANKLE2	23141	broad.mit.edu	37	12	133311027	133311027	+	Missense_Mutation	SNP	G	T	T	rs143880331	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:133311027G>T	uc001ukx.2	-	10	1902	c.1835C>A	c.(1834-1836)GCT>GAT	p.A612D	ANKLE2_uc009zyw.1_5'UTR|ANKLE2_uc001uky.3_Missense_Mutation_p.A550D	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	612						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		TTCTTGTTGAGCCTTTTTGCC	0.527													35	89					1.62565e-12	1.80183e-12	1	1	0	
ZNF268	10795	broad.mit.edu	37	12	133764590	133764590	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr12:133764590C>T	uc010tcf.1	+	3	496	c.166C>T	c.(166-168)CGC>TGC	p.R56C	ZNF268_uc010tbv.1_5'UTR|ZNF268_uc010tbw.1_5'UTR|ZNF268_uc010tbx.1_Intron|ZNF268_uc010tby.1_Intron|ZNF268_uc010tbz.1_5'UTR|ZNF268_uc010tca.1_Intron|ZNF268_uc010tcb.1_5'UTR|ZNF268_uc010tcc.1_Intron|ZNF268_uc010tcd.1_5'UTR|ZNF268_uc010tce.1_Intron|ZNF268_uc010tcg.1_5'UTR|ZNF268_uc010tch.1_Missense_Mutation_p.R56C	NM_003415	NP_003406	Q14587	ZN268_HUMAN	zinc finger protein 268 isoform a	56						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.000215)|all_epithelial(31;0.096)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		GCAGAAGAGTCGCAGAATAGA	0.488													3	11					0	0	1	0	0	
LOC284232	284232	broad.mit.edu	37	13	19412009	19412009	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:19412009G>A	uc010tcj.1	-	1		c.34101C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CTATACAGACGACATTAGCCT	0.378													41	79					0	0	1	0	0	
LOC284232	284232	broad.mit.edu	37	13	19412881	19412881	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:19412881C>A	uc010tcj.1	-	1		c.33229G>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATAGCAATATCTGTCTTCAAA	0.269													57	90					4.6707e-30	5.70484e-30	1	1	0	
LOC284232	284232	broad.mit.edu	37	13	19415818	19415818	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:19415818T>G	uc010tcj.1	-	1		c.30292A>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATAGTTGTATTTTTTCACTTT	0.264													14	16					0	0	1	0	0	
LOC284232	284232	broad.mit.edu	37	13	19426057	19426057	+	RNA	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:19426057A>C	uc010tcj.1	-	1		c.20053T>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GTGATTCAAAAAATATACATA	0.333													44	65					0	0	1	0	0	
LOC284232	284232	broad.mit.edu	37	13	19426147	19426147	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:19426147T>C	uc010tcj.1	-	1		c.19963A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TATGTAAGTATGACAGGGCCA	0.368													50	83					0	0	1	0	0	
LOC284232	284232	broad.mit.edu	37	13	19432967	19432967	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:19432967C>T	uc010tcj.1	-	1		c.13143G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CTCAAGACTTCGTCATCTAAT	0.338													38	51					0	0	1	0	0	
LOC284232	284232	broad.mit.edu	37	13	19433147	19433147	+	RNA	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:19433147A>C	uc010tcj.1	-	1		c.12963T>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CTATATATTAAATTATGATTC	0.299													7	8					0	0	1	0	0	
DKFZp686A1627	266695	broad.mit.edu	37	13	19625553	19625553	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:19625553A>G	uc001umb.1	-	8		c.2970T>C				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						GGAGCAGGAAACATGCTCTGT	0.577													3	5					0	0	1	0	0	
TPTE2	93492	broad.mit.edu	37	13	20000636	20000636	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20000636C>T	uc001umd.2	-	19	1535	c.1324G>A	c.(1324-1326)GAC>AAC	p.D442N	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Missense_Mutation_p.D331N|TPTE2_uc001ume.2_Missense_Mutation_p.D365N|TPTE2_uc009zzm.2_Missense_Mutation_p.D113N|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.D113N	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	442	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		AATATTTTGTCTGTTTCAATG	0.343													25	80					0	0	1	0	0	
MPHOSPH8	54737	broad.mit.edu	37	13	20240591	20240591	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20240591C>T	uc001umh.2	+	10	2055	c.2046C>T	c.(2044-2046)ATC>ATT	p.I682I	MPHOSPH8_uc001umg.2_Silent_p.I682I	NM_017520	NP_059990	Q99549	MPP8_HUMAN	M-phase phosphoprotein 8	682	ANK 3.				cell cycle	cytoplasm|nucleus					0		all_cancers(29;2.83e-16)|all_lung(29;1.16e-17)|all_epithelial(30;8.13e-16)|Lung NSC(5;6.91e-15)|Lung SC(185;0.0367)		all cancers(112;8.43e-05)|Epithelial(112;0.000426)|OV - Ovarian serous cystadenocarcinoma(117;0.00596)|Lung(94;0.015)|LUSC - Lung squamous cell carcinoma(192;0.0795)		ATTCAGACATCGTACGACTCG	0.438													68	115					0	0	1	0	0	
PSPC1	55269	broad.mit.edu	37	13	20277378	20277378	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20277378A>G	uc001uml.2	-	9	1695	c.1509T>C	c.(1507-1509)GGT>GGC	p.G503G	PSPC1_uc001umj.1_Intron|PSPC1_uc001umk.1_Intron	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	503	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		TACCAAAGCCACCAGGACCAC	0.473													18	58					0	0	1	0	0	
PSPC1	55269	broad.mit.edu	37	13	20279843	20279843	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20279843C>T	uc001uml.2	-	8	1531	c.1345G>A	c.(1345-1347)GCA>ACA	p.A449T	PSPC1_uc001umj.1_Intron|PSPC1_uc001umk.1_Intron	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	449	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		CCCATATTTGCGGCTCCTTCT	0.443													10	49					0	0	1	0	0	
PSPC1	55269	broad.mit.edu	37	13	20304443	20304443	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20304443C>T	uc001uml.2	-	6	1280	c.1094G>A	c.(1093-1095)CGA>CAA	p.R365Q	PSPC1_uc001umj.1_RNA|PSPC1_uc001umk.1_RNA	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	365	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		TTCTCTGTGTCGGATCATTTC	0.393													20	244					0	0	1	0	0	
PSPC1	55269	broad.mit.edu	37	13	20356882	20356882	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20356882T>G	uc001uml.2	-	1	202	c.16A>C	c.(16-18)AAC>CAC	p.N6H	PSPC1_uc001umj.1_RNA|PSPC1_uc001umk.1_RNA	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	6					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		TGCTTCAGGTTTCCTCTTAAC	0.552													24	67					0	0	1	0	0	
ZMYM2	7750	broad.mit.edu	37	13	20567921	20567921	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20567921T>G	uc001umr.2	+	4	1007	c.709T>G	c.(709-711)TTT>GTT	p.F237V	ZMYM2_uc001umq.2_Intron|ZMYM2_uc001ums.2_Missense_Mutation_p.F237V|ZMYM2_uc001umt.2_Missense_Mutation_p.F237V|ZMYM2_uc009zzn.1_Intron	NM_003453	NP_003444	Q9UBW7	ZMYM2_HUMAN	zinc finger protein 198	237					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	ubiquitin conjugating enzyme binding|zinc ion binding			lung(3)|ovary(2)|prostate(1)	6		all_cancers(29;8.65e-21)|all_epithelial(30;1.04e-18)|all_lung(29;6.75e-18)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;0.000148)|Epithelial(112;0.000249)|OV - Ovarian serous cystadenocarcinoma(117;0.00816)|Lung(94;0.0173)|LUSC - Lung squamous cell carcinoma(192;0.0856)		GTCAAGTAATTTTGGTGTTAA	0.403													74	130					0	0	1	0	0	
GJA3	2700	broad.mit.edu	37	13	20716951	20716951	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20716951G>A	uc001umx.1	-	2	649	c.477C>T	c.(475-477)TTC>TTT	p.F159F		NM_021954	NP_068773	Q9Y6H8	CXA3_HUMAN	connexin 46	159	Helical; (Potential).				cell-cell signaling|visual perception	connexon complex|integral to membrane		p.F159F(1)		pancreas(1)	1		all_cancers(29;1.4e-21)|all_epithelial(30;8.75e-19)|all_lung(29;1.28e-17)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000554)|Epithelial(112;0.000872)|OV - Ovarian serous cystadenocarcinoma(117;0.0105)|Lung(94;0.0251)|LUSC - Lung squamous cell carcinoma(192;0.0784)		AGCCCACCTCGAACAGCGTCT	0.652													15	36					0	0	1	0	0	
GJB6	10804	broad.mit.edu	37	13	20797280	20797280	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20797280C>A	uc001umz.3	-	3	893	c.340G>T	c.(340-342)GAT>TAT	p.D114Y	GJB6_uc001unc.3_Missense_Mutation_p.D114Y|GJB6_uc001una.3_Missense_Mutation_p.D114Y|GJB6_uc001und.3_Missense_Mutation_p.D114Y|GJB6_uc001unb.3_Missense_Mutation_p.D114Y	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	114	Cytoplasmic (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		TCTTTGAAATCATTCCTCTTC	0.512													26	46					1.2476e-16	1.43726e-16	1	1	0	
GJB6	10804	broad.mit.edu	37	13	20797414	20797414	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:20797414A>G	uc001umz.3	-	3	759	c.206T>C	c.(205-207)TTC>TCC	p.F69S	GJB6_uc001unc.3_Missense_Mutation_p.F69S|GJB6_uc001una.3_Missense_Mutation_p.F69S|GJB6_uc001und.3_Missense_Mutation_p.F69S|GJB6_uc001unb.3_Missense_Mutation_p.F69S	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	69	Extracellular (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		GGACACCGGGAAAAAGTGGTC	0.592													27	52					0	0	1	0	0	
LATS2	26524	broad.mit.edu	37	13	21557416	21557416	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:21557416A>G	uc009zzs.2	-	5	2794	c.2429T>C	c.(2428-2430)TTC>TCC	p.F810S	LATS2_uc001unr.3_Missense_Mutation_p.F810S	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	810	Protein kinase.				cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		GCAGAGGCCGAAATCTGTGAG	0.443													33	67					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23906234	23906234	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23906234C>T	uc001uon.2	-	10	12370	c.11781G>A	c.(11779-11781)GCG>GCA	p.A3927A	SACS_uc001uoo.2_Silent_p.A3780A|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3927					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TATAATGTGGCGCATCGTCAA	0.443													62	117					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23906297	23906297	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23906297C>T	uc001uon.2	-	10	12307	c.11718G>A	c.(11716-11718)GCG>GCA	p.A3906A	SACS_uc001uoo.2_Silent_p.A3759A|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3906					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GGAGGTAAAGCGCAAGGTCTC	0.438													75	124					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23906840	23906840	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23906840A>G	uc001uon.2	-	10	11764	c.11175T>C	c.(11173-11175)GGT>GGC	p.G3725G	SACS_uc001uoo.2_Silent_p.G3578G|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3725					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GTTCTTGTGGACCAAGGTCAC	0.388													53	106					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23907108	23907108	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23907108C>T	uc001uon.2	-	10	11496	c.10907G>A	c.(10906-10908)CGA>CAA	p.R3636Q	SACS_uc001uoo.2_Missense_Mutation_p.R3489Q|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3636			R -> Q (in SACS; associated with T-3652).		cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CAAATCCATTCGTTCTTGGAA	0.373													20	41					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23907994	23907994	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23907994C>A	uc001uon.2	-	10	10610	c.10021G>T	c.(10021-10023)GAC>TAC	p.D3341Y	SACS_uc001uoo.2_Missense_Mutation_p.D3194Y|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3341					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AATGCACTGTCTTTGGAACAG	0.393													38	75					5.71845e-15	6.48651e-15	1	1	0	
SACS	26278	broad.mit.edu	37	13	23908017	23908017	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23908017G>T	uc001uon.2	-	10	10587	c.9998C>A	c.(9997-9999)GCT>GAT	p.A3333D	SACS_uc001uoo.2_Missense_Mutation_p.A3186D|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3333					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TTTGTTCAAAGCAAGCTGAAT	0.413													34	79					3.76114e-14	4.23289e-14	1	1	0	
SACS	26278	broad.mit.edu	37	13	23909908	23909908	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23909908G>A	uc001uon.2	-	10	8696	c.8107C>T	c.(8107-8109)CGT>TGT	p.R2703C	SACS_uc001uoo.2_Missense_Mutation_p.R2556C|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2703			R -> C (in SACS).		cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TCTGCATTACGAAGAGGAAAT	0.413													29	59					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23911396	23911396	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23911396C>T	uc001uon.2	-	10	7208	c.6619G>A	c.(6619-6621)GCT>ACT	p.A2207T	SACS_uc001uoo.2_Missense_Mutation_p.A2060T|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2207					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TATTTTGCAGCAAAATCCTTT	0.368													22	39					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23911438	23911438	+	Missense_Mutation	SNP	C	T	T	rs149278134		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23911438C>T	uc001uon.2	-	10	7166	c.6577G>A	c.(6577-6579)GAT>AAT	p.D2193N	SACS_uc001uoo.2_Missense_Mutation_p.D2046N|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2193					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AGTTTCTCATCGATAAGACTC	0.373													16	40					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23913082	23913082	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23913082G>A	uc001uon.2	-	10	5522	c.4933C>T	c.(4933-4935)CGA>TGA	p.R1645*	SACS_uc001uoo.2_Nonsense_Mutation_p.R1498*|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1645					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AAGGACAGTCGGAAAAGGGTT	0.363													42	70					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23915457	23915457	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23915457T>G	uc001uon.2	-	10	3147	c.2558A>C	c.(2557-2559)AAA>ACA	p.K853T	SACS_uc001uoo.2_Missense_Mutation_p.K706T|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	853					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		ATCTAATTTTTTAAGGACAAA	0.358													30	74					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23915664	23915664	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23915664T>G	uc001uon.2	-	10	2940	c.2351A>C	c.(2350-2352)AAA>ACA	p.K784T	SACS_uc001uoo.2_Missense_Mutation_p.K637T|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Missense_Mutation_p.K637T	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	784					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		ATAAAGATTTTTCCAAACCAT	0.368													37	43					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23929574	23929574	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:23929574A>G	uc001uon.2	-	8	1766	c.1177T>C	c.(1177-1179)TTG>CTG	p.L393L	SACS_uc001uoo.2_Silent_p.L246L|SACS_uc001uop.1_Silent_p.L180L|SACS_uc001uoq.1_Silent_p.L246L	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	393					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TTACACACCAACCAAGATGTT	0.398													34	77					0	0	1	0	0	
MIPEP	4285	broad.mit.edu	37	13	24415537	24415537	+	Silent	SNP	C	A	A	rs150114409		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:24415537C>A	uc001uox.3	-	11	1297	c.1197G>T	c.(1195-1197)GGG>GGT	p.G399G		NM_005932	NP_005923	Q99797	MIPEP_HUMAN	mitochondrial intermediate peptidase precursor	399					protein processing involved in protein targeting to mitochondrion|proteolysis	mitochondrial matrix	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		all_cancers(29;1.83e-22)|all_epithelial(30;8.75e-19)|all_lung(29;9.17e-18)|Lung SC(185;0.0225)|Breast(139;0.14)		all cancers(112;0.00389)|Epithelial(112;0.0266)|OV - Ovarian serous cystadenocarcinoma(117;0.0717)|Lung(94;0.207)|GBM - Glioblastoma multiforme(144;0.232)		ATAATGAAATCCCCAACAGTC	0.473													30	54					3.73148e-12	4.12027e-12	1	1	0	
C1QTNF9B	387911	broad.mit.edu	37	13	24465742	24465742	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:24465742C>T	uc010tcw.1	-	3	688	c.688G>A	c.(688-690)GAA>AAA	p.E230K	MIPEP_uc001uox.3_5'Flank|PCOTH_uc001uoy.2_Intron|PCOTH_uc009zzx.2_Intron|C1QTNF9B_uc010tcv.1_Intron|C1QTNF9B_uc001uoz.1_Intron|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.E230K	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	230	C1q.					collagen					0						TGGTTGAATTCATTATACAGG	0.428													54	107					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	13	24515769	24515769	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:24515769A>G	uc001upb.1	-	2		c.3677T>C								Homo sapiens cDNA FLJ45359 fis, clone BRHIP3013588.																		ATATACCTGTATCAAAGGCAC	0.383													22	47					0	0	1	0	0	
PARP4	143	broad.mit.edu	37	13	25008639	25008639	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25008639T>C	uc001upl.2	-	31	4746	c.4640A>G	c.(4639-4641)GAC>GGC	p.D1547G		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1547					cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		CAGGATACTGTCATCTTTTGT	0.403													20	67					0	0	1	0	0	
PARP4	143	broad.mit.edu	37	13	25008671	25008671	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25008671G>A	uc001upl.2	-	31	4714	c.4608C>T	c.(4606-4608)TGC>TGT	p.C1536C		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1536					cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		TTTGTAAAAAGCAGCTGTCTT	0.393													26	69					0	0	1	0	0	
PARP4	143	broad.mit.edu	37	13	25067745	25067745	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25067745T>G	uc001upl.2	-	8	974	c.868A>C	c.(868-870)AGC>CGC	p.S290R	PARP4_uc010tdc.1_Missense_Mutation_p.S290R	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	290	PARP alpha-helical.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		TCGTTGAGGCTAATCCTGTTC	0.493													23	41					0	0	1	0	0	
LOC374491	374491	broad.mit.edu	37	13	25171719	25171719	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25171719A>G	uc001upm.2	+	13		c.1615A>G			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TGCCATGTGCATGTTCATATG	0.289													13	17					0	0	1	0	0	
ATP12A	479	broad.mit.edu	37	13	25284622	25284622	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25284622G>A	uc001upp.2	+	20	2975	c.2788G>A	c.(2788-2790)GAA>AAA	p.E930K	ATP12A_uc010aaa.2_Missense_Mutation_p.E936K	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	930	Lumenal (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GGAATACCTAGAATGGACGGG	0.363													25	65					0	0	1	0	0	
RNF17	56163	broad.mit.edu	37	13	25353856	25353856	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25353856A>C	uc001upr.2	+	5	522	c.481A>C	c.(481-483)AGT>CGT	p.S161R	RNF17_uc010tdd.1_Missense_Mutation_p.S20R|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.S161R|RNF17_uc001ups.2_Missense_Mutation_p.S100R|RNF17_uc001upq.1_Missense_Mutation_p.S161R	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	161					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AGCACACCATAGTTTCGAACA	0.353													29	65					0	0	1	0	0	
RNF17	56163	broad.mit.edu	37	13	25353861	25353861	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25353861C>T	uc001upr.2	+	5	527	c.486C>T	c.(484-486)TTC>TTT	p.F162F	RNF17_uc010tdd.1_Silent_p.F21F|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.F162F|RNF17_uc001ups.2_Silent_p.F101F|RNF17_uc001upq.1_Silent_p.F162F	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	162					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ACCATAGTTTCGAACAGTTAA	0.348													32	55					0	0	1	0	0	
RNF17	56163	broad.mit.edu	37	13	25406069	25406069	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25406069A>C	uc001upr.2	+	18	2476	c.2435A>C	c.(2434-2436)AAA>ACA	p.K812T	RNF17_uc010tdd.1_Missense_Mutation_p.K671T|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.K812T|RNF17_uc001ups.2_Missense_Mutation_p.K751T|RNF17_uc010aac.2_Missense_Mutation_p.K10T	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	812					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GCTAAAGAAAAATTTGAAGAA	0.284													23	37					0	0	1	0	0	
RNF17	56163	broad.mit.edu	37	13	25444782	25444782	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25444782T>C	uc001upr.2	+	32	4393	c.4352T>C	c.(4351-4353)GTC>GCC	p.V1451A	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.V1447A|RNF17_uc001ups.2_Missense_Mutation_p.V1390A|RNF17_uc010aac.2_Missense_Mutation_p.V643A|RNF17_uc010aad.2_Missense_Mutation_p.V461A	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1451					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GATAGTGGAGTCAGCGGGGAA	0.438													28	57					0	0	1	0	0	
MTMR6	9107	broad.mit.edu	37	13	25826043	25826043	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:25826043C>T	uc001uqf.3	-	12	1745	c.1426G>A	c.(1426-1428)GAA>AAA	p.E476K	MTMR6_uc001uqe.1_Missense_Mutation_p.E476K	NM_004685	NP_004676	Q9Y217	MTMR6_HUMAN	myotubularin related protein 6	476	Myotubularin phosphatase.					cytoplasm|nuclear envelope	calcium-activated potassium channel activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)|skin(2)	4		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.00927)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.164)		CTGTGAGATTCGGAACTGTAG	0.328													74	138					0	0	1	0	0	
ATP8A2	51761	broad.mit.edu	37	13	26343251	26343251	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:26343251G>A	uc001uqk.2	+	26	2594	c.2452G>A	c.(2452-2454)GCC>ACC	p.A818T	ATP8A2_uc010tdi.1_Missense_Mutation_p.A778T|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Missense_Mutation_p.A368T	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	778	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		CATCACCCTCGCCATCGGAGA	0.557													20	60					0	0	1	0	0	
RNF6	6049	broad.mit.edu	37	13	26789090	26789090	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:26789090C>T	uc001uqo.2	-	5	1220	c.929G>A	c.(928-930)CGA>CAA	p.R310Q	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Missense_Mutation_p.R310Q|RNF6_uc001uqp.2_Missense_Mutation_p.R310Q|RNF6_uc001uqq.2_Missense_Mutation_p.R310Q|RNF6_uc010tdk.1_Intron	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	310	Arg-rich.				negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		TGAACGGCTTCGACTATTGGA	0.418													69	155					0	0	1	0	0	
RPL21	6144	broad.mit.edu	37	13	27830372	27830372	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:27830372C>T	uc001ura.2	+	5	337	c.294C>T	c.(292-294)CAC>CAT	p.H98H	RPL21_uc001uqz.1_Silent_p.H56H	NM_000982	NP_000973	P46778	RL21_HUMAN	ribosomal protein L21	98					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		Lung SC(185;0.0156)	Colorectal(13;0.00042)|READ - Rectum adenocarcinoma(15;0.105)	all cancers(112;0.0287)|OV - Ovarian serous cystadenocarcinoma(117;0.118)|Epithelial(112;0.139)|GBM - Glioblastoma multiforme(144;0.21)		ACATTAAGCACTCTAAGAGCC	0.403													6	10					0	0	1	0	0	
LNX2	222484	broad.mit.edu	37	13	28155573	28155573	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:28155573T>A	uc001url.3	-	2	577	c.268A>T	c.(268-270)AGA>TGA	p.R90*	LNX2_uc001urm.1_Nonsense_Mutation_p.R90*	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	90							zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		AAATGAAGTCTTTTCCGGTCC	0.383													28	32					0	0	1	0	0	
FLT1	2321	broad.mit.edu	37	13	29001999	29001999	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:29001999G>A	uc001usb.3	-	9	1451	c.1166C>T	c.(1165-1167)TCG>TTG	p.S389L	FLT1_uc010aar.1_Missense_Mutation_p.S389L|FLT1_uc001usc.3_Missense_Mutation_p.S389L|FLT1_uc010tdp.1_Missense_Mutation_p.S389L	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	389	Ig-like C2-type 4.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GATAATTAACGAGTAGCCACG	0.408													52	75					0	0	1	0	0	
FLT1	2321	broad.mit.edu	37	13	29041260	29041260	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:29041260T>G	uc001usb.3	-	3	453	c.168A>C	c.(166-168)GAA>GAC	p.E56D	FLT1_uc010aar.1_Missense_Mutation_p.E56D|FLT1_uc001usc.3_Missense_Mutation_p.E56D|FLT1_uc010tdp.1_Missense_Mutation_p.E56D|FLT1_uc001usd.2_Missense_Mutation_p.E56D	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	56	Ig-like C2-type 1.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TATGGGCTGCTTCCCCCCTGC	0.448													32	77					0	0	1	0	0	
MTUS2	23281	broad.mit.edu	37	13	29608080	29608080	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:29608080T>C	uc001usl.3	+	2	2352	c.2294T>C	c.(2293-2295)GTC>GCC	p.V765A		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	755	Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CATTATGAAGTCCCTCCAACT	0.448													16	35					0	0	1	0	0	
MTUS2	23281	broad.mit.edu	37	13	30077268	30077268	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:30077268G>A	uc001usl.3	+	14	4123	c.4065G>A	c.(4063-4065)TCG>TCA	p.S1355S	MTUS2_uc001usm.3_Silent_p.S324S|MTUS2_uc010aau.2_Silent_p.S234S|MTUS2_uc010tdq.1_Silent_p.S107S	NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1345						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TTAAACTCTCGCCCACATCTC	0.587													24	46					0	0	1	0	0	
UBL3	5412	broad.mit.edu	37	13	30346289	30346289	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:30346289A>C	uc001usp.2	-	3	1328	c.183T>G	c.(181-183)ATT>ATG	p.I61M		NM_007106	NP_009037	O95164	UBL3_HUMAN	ubiquitin-like 3 precursor	61	Ubiquitin-like.					intracellular|plasma membrane					0		Lung SC(185;0.0281)		all cancers(112;0.0598)|GBM - Glioblastoma multiforme(144;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.147)		GTCCTTGATAAATAAGTCGTA	0.388													29	76					0	0	1	0	0	
KATNAL1	84056	broad.mit.edu	37	13	30857759	30857759	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:30857759C>T	uc001uss.2	-	2	257	c.156G>A	c.(154-156)TGG>TGA	p.W52*	KATNAL1_uc001ust.2_Nonsense_Mutation_p.W52*	NM_001014380	NP_001014402	Q9BW62	KATL1_HUMAN	katanin p60 subunit A-like 1	52						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity				0		Lung SC(185;0.0257)		all cancers(112;0.114)|OV - Ovarian serous cystadenocarcinoma(117;0.213)		TTACCTGTTGCCATTTGCCTT	0.388													47	98					0	0	1	0	0	
C13orf33	84935	broad.mit.edu	37	13	31495898	31495898	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:31495898G>A	uc001uth.3	+	4	1043	c.702G>A	c.(700-702)ACG>ACA	p.T234T	uc001utg.1_Intron	NM_032849	NP_116238	Q5VYS4	CM033_HUMAN	hypothetical protein LOC84935	234											0		Lung SC(185;0.0281)		all cancers(112;0.00914)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.0559)|GBM - Glioblastoma multiforme(144;0.244)		AGAAGGAGACGATTAAGTTAT	0.353													23	44					0	0	1	0	0	
FRY	10129	broad.mit.edu	37	13	32721440	32721440	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:32721440C>T	uc001utx.2	+	12	1697	c.1201C>T	c.(1201-1203)CGA>TGA	p.R401*	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	401					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CAAGATGGCTCGAGTTGCACT	0.408													23	28					0	0	1	0	0	
FRY	10129	broad.mit.edu	37	13	32768298	32768298	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:32768298G>A	uc001utx.2	+	29	4106	c.3610G>A	c.(3610-3612)GAA>AAA	p.E1204K	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1204					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		ACTTGGCTGCGAAGTTGTTGT	0.378													40	71					0	0	1	0	0	
FRY	10129	broad.mit.edu	37	13	32776594	32776594	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:32776594C>T	uc001utx.2	+	31	4444	c.3948C>T	c.(3946-3948)AGC>AGT	p.S1316S	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1316					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CCCTCTACAGCGTGTCACTTG	0.502													26	61					0	0	1	0	0	
FRY	10129	broad.mit.edu	37	13	32802781	32802781	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:32802781C>T	uc001utx.2	+	40	5891	c.5395C>T	c.(5395-5397)CTC>TTC	p.L1799F	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1799					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CATTGAGTTTCTCACGACCAG	0.493													24	60					0	0	1	0	0	
FRY	10129	broad.mit.edu	37	13	32805401	32805401	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:32805401C>T	uc001utx.2	+	41	5987	c.5491C>T	c.(5491-5493)CGT>TGT	p.R1831C	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1831					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TAATTTTCTACGTCACGTTGT	0.373													50	66					0	0	1	0	0	
FRY	10129	broad.mit.edu	37	13	32821606	32821606	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:32821606G>A	uc001utx.2	+	48	7471	c.6975G>A	c.(6973-6975)GGG>GGA	p.G2325G	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2325					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		AATTACCTGGGAAAACCCTGG	0.408													27	68					0	0	1	0	0	
BRCA2	675	broad.mit.edu	37	13	32907018	32907018	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:32907018G>T	uc001uub.1	+	10	1630	c.1403G>T	c.(1402-1404)AGA>ATA	p.R468I	BRCA2_uc001uua.1_Missense_Mutation_p.R345I	NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	468					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		GTAAATAAGAGAGATGAAGAG	0.388			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			39	74					2.40579e-17	2.7868e-17	1	1	0	
BRCA2	675	broad.mit.edu	37	13	32914522	32914522	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:32914522C>A	uc001uub.1	+	11	6257	c.6030C>A	c.(6028-6030)GTC>GTA	p.V2010V		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2010					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		CCAAGCAAGTCTTTTCCAAAG	0.353			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			34	72					3.11337e-16	3.5706e-16	1	1	0	
BRCA2	675	broad.mit.edu	37	13	32929345	32929345	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:32929345A>C	uc001uub.1	+	14	7582	c.7355A>C	c.(7354-7356)AAT>ACT	p.N2452T		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2452	Interaction with FANCD2.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		ATTAATGACAATGAGATTCAT	0.333			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			22	34					0	0	1	0	0	
N4BP2L2	10443	broad.mit.edu	37	13	33017991	33017991	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:33017991T>G	uc010abe.1	-	7	705	c.683A>C	c.(682-684)AAA>ACA	p.K228T	N4BP2L2_uc001uug.2_Missense_Mutation_p.K111T|N4BP2L2_uc010abd.1_Missense_Mutation_p.K141T|N4BP2L2_uc001uuh.2_Missense_Mutation_p.K59T|N4BP2L2_uc001uuj.2_Intron|N4BP2L2_uc010tdz.1_Missense_Mutation_p.K213T	NM_033111	NP_149102	Q92802	N42L2_HUMAN	phosphonoformate immuno-associated protein 5	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0		Lung SC(185;0.0262)		all cancers(112;9.5e-07)|Epithelial(112;5.07e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00196)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.243)		ATCTTTATTTTTCCATCTTTT	0.333													9	11					0	0	1	0	0	
PDS5B	23047	broad.mit.edu	37	13	33275569	33275569	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:33275569C>A	uc010abf.2	+	17	2008	c.1850C>A	c.(1849-1851)TCT>TAT	p.S617Y	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	617					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		GATACCGAATCTATCAGGTAT	0.388													23	35					2.32416e-17	2.69338e-17	1	1	0	
KL	9365	broad.mit.edu	37	13	33590981	33590981	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:33590981G>A	uc001uus.2	+	1	411	c.403G>A	c.(403-405)GAC>AAC	p.D135N	KL_uc001uur.1_Intron	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	135	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CGTCTTCCGCGACACGGAGGC	0.706													9	23					0	0	1	0	0	
KL	9365	broad.mit.edu	37	13	33628183	33628183	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:33628183T>G	uc001uus.2	+	2	1107	c.1099T>G	c.(1099-1101)TTT>GTT	p.F367V	KL_uc001uur.1_Missense_Mutation_p.F60V	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	367	Glycosyl hydrolase-1 1.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		TGCTGACTTTTTTGCTCTTTG	0.428													112	222					0	0	1	0	0	
STARD13	90627	broad.mit.edu	37	13	33701653	33701653	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:33701653C>T	uc001uuw.2	-	6	1905	c.1779G>A	c.(1777-1779)TCG>TCA	p.S593S	STARD13_uc001uuu.2_Silent_p.S585S|STARD13_uc001uuv.2_Silent_p.S475S|STARD13_uc001uux.2_Silent_p.S558S|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Silent_p.S578S	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	593					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		GGGGCTGGTGCGACAGCTGGA	0.627													4	3					0	0	1	0	0	
NBEA	26960	broad.mit.edu	37	13	35692599	35692599	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:35692599G>T	uc001uvb.2	+	17	2437	c.2231G>T	c.(2230-2232)AGA>ATA	p.R744I		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	744						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TTTGATCAAAGAAATGGAATA	0.338													7	10					8.12818e-05	8.32951e-05	1	1	0	
MAB21L1	4081	broad.mit.edu	37	13	36049800	36049800	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:36049800T>G	uc001uvc.2	-	1	1033	c.476A>C	c.(475-477)AAA>ACA	p.K159T	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	159					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		GATTCTCAGTTTCACTTCGCT	0.562													23	46					0	0	1	0	0	
NBEA	26960	broad.mit.edu	37	13	36180562	36180562	+	Splice_Site	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:36180562G>A	uc001uvb.2	+	48	7503	c.7297_splice	c.e48-1	p.E2433_splice	NBEA_uc010abi.2_Splice_Site_p.E1089_splice|NBEA_uc010tee.1_Splice_Site_p.E226_splice|NBEA_uc010tef.1_Splice_Site_p.E226_splice|NBEA_uc010teg.1_Splice_Site_p.E226_splice|NBEA_uc001uvd.2_Splice_Site	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin							cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		ATTCCTGATAGGAACTAATTC	0.279													3	6					0	0	1	0	0	
NBEA	26960	broad.mit.edu	37	13	36202263	36202263	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:36202263G>A	uc001uvb.2	+	49	7701	c.7495G>A	c.(7495-7497)GAC>AAC	p.D2499N	NBEA_uc010abi.2_Missense_Mutation_p.D1155N|NBEA_uc010tee.1_Missense_Mutation_p.D292N|NBEA_uc010tef.1_Missense_Mutation_p.D292N|NBEA_uc010teg.1_Missense_Mutation_p.D292N|NBEA_uc001uvd.2_Missense_Mutation_p.D56N	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2499	BEACH.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TCAGTGGATCGACCTTATATT	0.403													9	18					0	0	1	0	0	
C13orf36	400120	broad.mit.edu	37	13	37269387	37269387	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:37269387C>T	uc001uvt.3	+	2	618	c.172C>T	c.(172-174)CTT>TTT	p.L58F		NM_203451	NP_982276	A2A2V5	CM036_HUMAN	hypothetical protein LOC400120	58	Helical; (Potential).					integral to membrane				skin(1)	1						TCTGCTTCTGCTTTTAATCAT	0.483													44	124					0	0	1	0	0	
ALG5	29880	broad.mit.edu	37	13	37539735	37539735	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:37539735A>C	uc001uvy.2	-	8	817	c.750T>G	c.(748-750)TTT>TTG	p.F250L	ALG5_uc010teq.1_Missense_Mutation_p.F220L|ALG5_uc010ter.1_RNA	NM_013338	NP_037470	Q9Y673	ALG5_HUMAN	dolichyl-phosphate beta-glucosyltransferase	250	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate beta-glucosyltransferase activity|oligosaccharyl transferase activity				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)		all cancers(112;5.79e-07)|Epithelial(112;1.81e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00785)|BRCA - Breast invasive adenocarcinoma(63;0.0127)|GBM - Glioblastoma multiforme(144;0.0472)		GTAGAGATGAAAACGTCCGTG	0.448													42	83					0	0	1	0	0	
TRPC4	7223	broad.mit.edu	37	13	38211598	38211598	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:38211598C>A	uc001uws.2	-	11	2611	c.2376G>T	c.(2374-2376)AAG>AAT	p.K792N	TRPC4_uc010abv.2_Missense_Mutation_p.K372N|TRPC4_uc001uwt.2_Intron|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.K619N|TRPC4_uc010abx.2_Missense_Mutation_p.K797N|TRPC4_uc010aby.2_Intron	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	792	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GGCTGAAATTCTTTTTCTTGT	0.428													39	73					4.40281e-34	5.42128e-34	1	1	0	
TRPC4	7223	broad.mit.edu	37	13	38213186	38213186	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:38213186C>A	uc001uws.2	-	10	2437	c.2202G>T	c.(2200-2202)GAG>GAT	p.E734D	TRPC4_uc010abv.2_Missense_Mutation_p.E314D|TRPC4_uc001uwt.2_Missense_Mutation_p.E734D|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.E561D|TRPC4_uc010abx.2_Missense_Mutation_p.E739D|TRPC4_uc010aby.2_Missense_Mutation_p.E669D	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	734	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CCTTAAAGTTCTCTTCGGTCA	0.413													66	144					2.40041e-21	2.84617e-21	1	1	0	
TRPC4	7223	broad.mit.edu	37	13	38213191	38213191	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:38213191C>T	uc001uws.2	-	10	2432	c.2197G>A	c.(2197-2199)GAA>AAA	p.E733K	TRPC4_uc010abv.2_Missense_Mutation_p.E313K|TRPC4_uc001uwt.2_Missense_Mutation_p.E733K|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.E560K|TRPC4_uc010abx.2_Missense_Mutation_p.E738K|TRPC4_uc010aby.2_Missense_Mutation_p.E668K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	733	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		AAGTTCTCTTCGGTCAGGCCT	0.403													72	149					0	0	1	0	0	
FREM2	341640	broad.mit.edu	37	13	39262086	39262086	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:39262086C>T	uc001uwv.2	+	1	914	c.605C>T	c.(604-606)GCG>GTG	p.A202V		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	202	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GCCCTGGACGCGCGGAGCCTG	0.647													7	11					0	0	1	0	0	
FREM2	341640	broad.mit.edu	37	13	39262102	39262102	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:39262102C>T	uc001uwv.2	+	1	930	c.621C>T	c.(619-621)TTC>TTT	p.F207F		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	207	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GCCTGGAGTTCGCCTTCCAGC	0.652													7	15					0	0	1	0	0	
FREM2	341640	broad.mit.edu	37	13	39265671	39265671	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:39265671A>G	uc001uwv.2	+	1	4499	c.4190A>G	c.(4189-4191)GAT>GGT	p.D1397G		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1397	Extracellular (Potential).|CSPG 9.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ATTAAATTTGATGTGACTGAT	0.418													72	118					0	0	1	0	0	
NHLRC3	387921	broad.mit.edu	37	13	39621836	39621836	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:39621836A>G	uc001uxc.2	+	7	1139	c.817A>G	c.(817-819)ATT>GTT	p.I273V	NHLRC3_uc001uxd.2_Missense_Mutation_p.I206V|NHLRC3_uc001uxe.2_Missense_Mutation_p.I76V	NM_001012754	NP_001012772	Q5JS37	NHLC3_HUMAN	NHL repeat containing 3 isoform a	273						extracellular region				skin(1)	1		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;2.37e-08)|Epithelial(112;3.14e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00101)|BRCA - Breast invasive adenocarcinoma(63;0.00335)|GBM - Glioblastoma multiforme(144;0.0128)		GAAGTACTTGATTGTGGCCCA	0.418													24	49					0	0	1	0	0	
LHFP	10186	broad.mit.edu	37	13	40175113	40175113	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:40175113C>T	uc001uxf.2	-	2	752	c.241G>A	c.(241-243)GAA>AAA	p.E81K		NM_005780	NP_005771	Q9Y693	LHFP_HUMAN	lipoma HMGIC fusion partner precursor	81						integral to membrane	DNA binding		HMGA2/LHFP(2)	soft_tissue(2)|lung(1)|breast(1)	4		Lung NSC(96;3.55e-06)|Breast(139;0.00408)|Ovarian(182;0.0107)|Prostate(109;0.0118)|Lung SC(185;0.0719)|Hepatocellular(188;0.114)		OV - Ovarian serous cystadenocarcinoma(117;6.48e-46)|Epithelial(112;8.43e-42)|all cancers(112;1.42e-36)|GBM - Glioblastoma multiforme(144;0.00187)|BRCA - Breast invasive adenocarcinoma(63;0.00886)|KIRC - Kidney renal clear cell carcinoma(186;0.048)|Kidney(163;0.0601)|LUSC - Lung squamous cell carcinoma(192;0.105)		ATCCTCCATTCTGCGCTGGGG	0.597			T	HMGA2	lipoma								54	116					0	0	1	0	0	
FOXO1	2308	broad.mit.edu	37	13	41134849	41134849	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:41134849T>C	uc001uxl.3	-	2	1164	c.779A>G	c.(778-780)AAC>AGC	p.N260S	FOXO1_uc010acc.1_Missense_Mutation_p.N75S	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	260					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		AAATTTACTGTTGTTGTCCAT	0.517													38	90					0	0	1	0	0	
FOXO1	2308	broad.mit.edu	37	13	41134955	41134955	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:41134955G>A	uc001uxl.3	-	2	1058	c.673C>T	c.(673-675)CGT>TGT	p.R225C	FOXO1_uc010acc.1_Missense_Mutation_p.R40C	NM_002015	NP_002006	Q12778	FOXO1_HUMAN	forkhead box O1	225	Fork-head.				anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX3/FOXO1(749)|PAX7/FOXO1(197)	soft_tissue(946)|lung(1)|central_nervous_system(1)	948		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		TTCTGCACACGAATGAACTTG	0.428													19	58					0	0	1	0	0	
KBTBD6	89890	broad.mit.edu	37	13	41705387	41705387	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:41705387G>A	uc001uxu.1	-	1	1550	c.1261C>T	c.(1261-1263)CGC>TGC	p.R421C	KBTBD6_uc010ace.1_Intron|KBTBD6_uc010tfe.1_Missense_Mutation_p.R355C|uc001uxv.1_5'Flank	NM_152903	NP_690867	Q86V97	KBTB6_HUMAN	kelch repeat and BTB (POZ) domain-containing 6	421	Kelch 1.						protein binding			ovary(1)|skin(1)	2		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;4.08e-09)|Epithelial(112;4.74e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000131)|GBM - Glioblastoma multiforme(144;0.000876)|BRCA - Breast invasive adenocarcinoma(63;0.0673)		CACAGCAAGCGATCTGCAAGT	0.488													54	95					0	0	1	0	0	
MTRF1	9617	broad.mit.edu	37	13	41808045	41808045	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:41808045T>G	uc001uxx.2	-	9	1439	c.969A>C	c.(967-969)AGA>AGC	p.R323S	MTRF1_uc001uxy.2_Missense_Mutation_p.R323S|MTRF1_uc001uxz.2_Missense_Mutation_p.R159S|MTRF1_uc010tff.1_Missense_Mutation_p.R336S|MTRF1_uc001uyc.1_Missense_Mutation_p.R323S|uc001uxv.1_Intron	NM_004294	NP_004285	O75570	RF1M_HUMAN	mitochondrial translational release factor 1	323					regulation of translational termination	mitochondrion	translation release factor activity, codon specific				0		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)|Ovarian(182;0.125)		OV - Ovarian serous cystadenocarcinoma(117;4.24e-10)|all cancers(112;2.05e-09)|Epithelial(112;2.48e-09)|GBM - Glioblastoma multiforme(144;0.00115)|BRCA - Breast invasive adenocarcinoma(63;0.0721)|KIRC - Kidney renal clear cell carcinoma(186;0.248)		TGTGGACAAGTCTGACGGCAC	0.443													32	104					0	0	1	0	0	
NAA16	79612	broad.mit.edu	37	13	41893022	41893022	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:41893022C>T	uc001uyf.2	+	3	544	c.220C>T	c.(220-222)CGT>TGT	p.R74C	NAA16_uc010tfg.1_RNA|NAA16_uc001uye.3_Missense_Mutation_p.R74C|NAA16_uc001uyd.3_Missense_Mutation_p.R74C	NM_024561	NP_078837	Q6N069	NAA16_HUMAN	NMDA receptor regulated 1-like protein isoform	74	TPR 1.				N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent	cytoplasm|transcription factor complex	binding			central_nervous_system(1)	1						TAAAGGACTTCGTAATGATGT	0.289													17	45					0	0	1	0	0	
NAA16	79612	broad.mit.edu	37	13	41932600	41932600	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:41932600A>C	uc001uyf.2	+	11	1572	c.1248A>C	c.(1246-1248)AAA>AAC	p.K416N	NAA16_uc010tfg.1_RNA|NAA16_uc001uye.3_Missense_Mutation_p.K416N|NAA16_uc001uyd.3_3'UTR	NM_024561	NP_078837	Q6N069	NAA16_HUMAN	NMDA receptor regulated 1-like protein isoform	416	TPR 6.				N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent	cytoplasm|transcription factor complex	binding			central_nervous_system(1)	1						TGAAAGCAAAAATTTACAAGG	0.308													12	33					0	0	1	0	0	
KIAA0564	23078	broad.mit.edu	37	13	42277525	42277525	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:42277525A>G	uc001uyj.2	-	27	3209	c.3139T>C	c.(3139-3141)TTC>CTC	p.F1047L		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1047						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TAGCCCATGAACGTTTGTTCT	0.373													21	38					0	0	1	0	0	
KIAA0564	23078	broad.mit.edu	37	13	42293761	42293761	+	Missense_Mutation	SNP	C	T	T	rs148181998		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:42293761C>T	uc001uyj.2	-	26	3152	c.3082G>A	c.(3082-3084)GGA>AGA	p.G1028R	KIAA0564_uc001uyk.2_Missense_Mutation_p.G1028R	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1028						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		GGCTTTGCTCCGATAGGTATC	0.388													29	44					0	0	1	0	0	
KIAA0564	23078	broad.mit.edu	37	13	42460062	42460062	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:42460062T>G	uc001uyj.2	-	8	1039	c.969A>C	c.(967-969)CAA>CAC	p.Q323H	KIAA0564_uc001uyk.2_Missense_Mutation_p.Q323H	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	323						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TTACCAAGATTTGAACCGCAG	0.353													11	18					0	0	1	0	0	
ENOX1	55068	broad.mit.edu	37	13	43896586	43896586	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:43896586C>A	uc001uza.3	-	11	1495	c.1195G>T	c.(1195-1197)GAA>TAA	p.E399*	ENOX1_uc001uzb.3_Nonsense_Mutation_p.E399*|ENOX1_uc001uzc.3_Nonsense_Mutation_p.E399*|ENOX1_uc001uyz.3_Nonsense_Mutation_p.E8*|ENOX1_uc010tfm.1_Nonsense_Mutation_p.E212*	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	399					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		ATTTCCATTTCTTCTTCGCGG	0.473													38	65					3.21399e-22	3.82912e-22	1	1	0	
CCDC122	160857	broad.mit.edu	37	13	44411430	44411430	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:44411430C>A	uc010acf.2	-	7	1067	c.808G>T	c.(808-810)GGA>TGA	p.G270*		NM_144974	NP_659411	Q5T0U0	CC122_HUMAN	coiled-coil domain containing 122	270											0		Lung NSC(96;7.5e-06)|Breast(139;0.00765)|Hepatocellular(98;0.00826)|Prostate(109;0.0143)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000767)|BRCA - Breast invasive adenocarcinoma(63;0.128)		TCTTGCATTCCAATGCATTTT	0.368													20	51					2.27731e-05	2.34574e-05	1	1	0	
TSC22D1	8848	broad.mit.edu	37	13	45149181	45149181	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:45149181G>A	uc001uzn.3	-	1	1521	c.1030C>T	c.(1030-1032)CCT>TCT	p.P344S	TSC22D1_uc001uzo.1_Missense_Mutation_p.P344S	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	344					transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		GCAGCACTAGGAATATTGCTT	0.403													23	62					0	0	1	0	0	
KCTD4	386618	broad.mit.edu	37	13	45768256	45768256	+	Silent	SNP	G	A	A	rs34555048	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:45768256G>A	uc001uzx.3	-	2	851	c.447C>T	c.(445-447)CAC>CAT	p.H149H	GTF2F2_uc001uzv.2_Intron|GTF2F2_uc001uzw.2_Intron	NM_198404	NP_940686	Q8WVF5	KCTD4_HUMAN	potassium channel tetramerisation domain	149						voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Lung NSC(96;6.55e-05)|Breast(139;0.00378)|Prostate(109;0.00438)|Lung SC(185;0.0262)|Hepatocellular(98;0.0524)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000249)|BRCA - Breast invasive adenocarcinoma(63;0.207)		GTGAACGATCGTGGTTATCTG	0.423													47	105					0	0	1	0	0	
TPT1	7178	broad.mit.edu	37	13	45914178	45914178	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:45914178T>G	uc001uzy.1	-	3	337	c.244A>C	c.(244-246)AGT>CGT	p.S82R	TPT1_uc001uzz.1_Missense_Mutation_p.S48R|SNORA31_uc001vaa.1_5'Flank|TPT1_uc010tfp.1_3'UTR|LOC100190939_uc010tfr.1_5'Flank|LOC100190939_uc001vac.2_5'Flank	NM_003295	NP_003286	P13693	TCTP_HUMAN	tumor protein, translationally-controlled 1	82					anti-apoptosis|response to virus	extracellular space|multivesicular body	calcium ion binding|protein binding				0		Lung NSC(96;0.00227)|Prostate(109;0.00578)|Breast(56;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000232)		TTTGTGAAACTTGTTTCCTGC	0.443													28	54					0	0	1	0	0	
ZC3H13	23091	broad.mit.edu	37	13	46559794	46559794	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:46559794C>T	uc010tfw.1	-	9	1364	c.1358G>A	c.(1357-1359)CGA>CAA	p.R453Q	ZC3H13_uc001vas.1_Missense_Mutation_p.R453Q|ZC3H13_uc001vat.1_Missense_Mutation_p.R453Q	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	453	Arg/Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		CCGACCATCTCGAGGTTCTCT	0.493													58	112					0	0	1	0	0	
ZC3H13	23091	broad.mit.edu	37	13	46563119	46563119	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:46563119C>A	uc010tfw.1	-	8	1064	c.1058G>T	c.(1057-1059)AGA>ATA	p.R353I	ZC3H13_uc001vas.1_Missense_Mutation_p.R353I|ZC3H13_uc001vat.1_Missense_Mutation_p.R353I	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	353	Arg/Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		TGAAGGAGTTCTTTTTCGACG	0.453													22	28					8.10497e-08	8.54627e-08	1	1	0	
CPB2	1361	broad.mit.edu	37	13	46638872	46638872	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:46638872C>T	uc001vaw.2	-	8	774	c.707G>A	c.(706-708)CGA>CAA	p.R236Q	uc001vau.1_Intron|uc001vav.1_Intron|CPB2_uc001vax.2_Missense_Mutation_p.R199Q	NM_001872	NP_001863	Q96IY4	CBPB2_HUMAN	plasma carboxypeptidase B2 isoform a	236					blood coagulation|fibrinolysis|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(96;4.21e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|all_neural(104;0.235)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.44e-05)		TCTCCACATTCGATTCTACAT	0.428													21	29					0	0	1	0	0	
CPB2	1361	broad.mit.edu	37	13	46653021	46653021	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:46653021C>A	uc001vaw.2	-	5	467	c.400G>T	c.(400-402)GAA>TAA	p.E134*	uc001vau.1_Intron|uc001vav.1_Intron|CPB2_uc001vax.2_Nonsense_Mutation_p.E134*	NM_001872	NP_001863	Q96IY4	CBPB2_HUMAN	plasma carboxypeptidase B2 isoform a	134					blood coagulation|fibrinolysis|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(96;4.21e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|all_neural(104;0.235)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.44e-05)		GTTATAAATTCTATCCAAGAA	0.398													18	38					2.94398e-08	3.12196e-08	1	1	0	
LCP1	3936	broad.mit.edu	37	13	46733037	46733037	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:46733037C>T	uc001vaz.3	-	3	278	c.152G>A	c.(151-153)CGA>CAA	p.R51Q	LCP1_uc001vba.3_Missense_Mutation_p.R51Q	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	51	EF-hand 2.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		TGTAATTTCTCGTACTCTATA	0.428			T	BCL6	NHL 								67	137					0	0	1	0	0	
LRCH1	23143	broad.mit.edu	37	13	47266769	47266769	+	Silent	SNP	C	T	T	rs139197416	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:47266769C>T	uc001vbj.2	+	8	1349	c.1113C>T	c.(1111-1113)CCC>CCT	p.P371P	LRCH1_uc010acp.2_Silent_p.P371P|LRCH1_uc001vbk.2_Silent_p.P371P|LRCH1_uc001vbl.3_Silent_p.P371P	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	371										ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		GCCTTAGCCCCGTTAAAGGTC	0.398													23	35					0	0	1	0	0	
LRCH1	23143	broad.mit.edu	37	13	47297460	47297460	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:47297460C>T	uc001vbj.2	+	16	1995	c.1759C>T	c.(1759-1761)CGT>TGT	p.R587C	LRCH1_uc001vbk.2_Missense_Mutation_p.R622C|LRCH1_uc001vbl.3_Missense_Mutation_p.R587C	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	587	CH.									ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		GGAACAACTTCGTGAGGTACC	0.318													15	33					0	0	1	0	0	
LRCH1	23143	broad.mit.edu	37	13	47315828	47315828	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:47315828C>T	uc001vbj.2	+	19	2268	c.2032C>T	c.(2032-2034)CGA>TGA	p.R678*	LRCH1_uc001vbk.2_Nonsense_Mutation_p.R713*|LRCH1_uc001vbl.3_Intron	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	678	CH.									ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		TCGTCACATTCGAAAGACTGT	0.512													184	383					0	0	1	0	0	
NUDT15	55270	broad.mit.edu	37	13	48615235	48615235	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:48615235A>C	uc001vbw.1	+	2	518	c.338A>C	c.(337-339)GAG>GCG	p.E113A	NUDT15_uc001vbv.2_Missense_Mutation_p.E113A	NM_018283	NP_060753	Q9NV35	NUD15_HUMAN	nudix-type motif 15	113	Interaction with PCNA.|Nudix hydrolase.						hydrolase activity|metal ion binding				0		all_cancers(8;3.75e-25)|all_epithelial(8;1.78e-13)|all_lung(13;2.85e-06)|Breast(56;0.000141)|all_hematologic(8;0.000219)|Lung NSC(96;0.000226)|Prostate(109;0.00132)|Acute lymphoblastic leukemia(8;0.0167)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;4.83e-07)		AAGAATGTAGAGCCTGAAAAA	0.328													10	18					0	0	1	0	0	
ITM2B	9445	broad.mit.edu	37	13	48830320	48830320	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:48830320A>G	uc001vbz.3	+	3	477	c.254A>G	c.(253-255)GAC>GGC	p.D85G		NM_021999	NP_068839	Q9Y287	ITM2B_HUMAN	integral membrane protein 2B	85	Lumenal (Potential).				nervous system development	Golgi membrane|integral to membrane|nucleus|plasma membrane	beta-amyloid binding				0		all_cancers(8;2.2e-31)|all_epithelial(8;6.77e-15)|all_lung(13;9.67e-07)|all_hematologic(8;9.72e-06)|Lung NSC(96;8.3e-05)|Breast(56;0.000141)|Acute lymphoblastic leukemia(8;0.00045)|Prostate(109;0.000669)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;1.97e-06)		TAGCCAGATGACGTGTACTAC	0.388													15	43					0	0	1	0	0	
CYSLTR2	57105	broad.mit.edu	37	13	49281629	49281629	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:49281629C>T	uc010acx.1	+	6	1359	c.676C>T	c.(676-678)CGG>TGG	p.R226W	CYSLTR2_uc010acy.1_Missense_Mutation_p.R226W|CYSLTR2_uc010acz.1_Missense_Mutation_p.R226W|CYSLTR2_uc010ada.1_Missense_Mutation_p.R226W|CYSLTR2_uc010adb.1_Missense_Mutation_p.R226W|CYSLTR2_uc010adc.1_Missense_Mutation_p.R226W|CYSLTR2_uc010add.1_Missense_Mutation_p.R226W|CYSLTR2_uc010acw.1_Missense_Mutation_p.R226W|CYSLTR2_uc001vck.2_Missense_Mutation_p.R226W	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	226	Cytoplasmic (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	GCTGATCATTCGGGTTCTGTT	0.478													49	117					0	0	1	0	0	
FNDC3A	22862	broad.mit.edu	37	13	49775978	49775978	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:49775978A>G	uc001vcm.2	+	24	3335	c.3030A>G	c.(3028-3030)GTA>GTG	p.V1010V	FNDC3A_uc001vcn.2_Silent_p.V1010V|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcq.2_Silent_p.V954V	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	1010	Fibronectin type-III 8.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		CATACAAAGTACAAAGACTTA	0.338													39	60					0	0	1	0	0	
CAB39L	81617	broad.mit.edu	37	13	49925041	49925041	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:49925041C>T	uc001vcw.2	-	5	901	c.403G>A	c.(403-405)GCC>ACC	p.A135T	CAB39L_uc001vcx.2_Missense_Mutation_p.A135T|CAB39L_uc010adf.2_Missense_Mutation_p.A132T	NM_030925	NP_112187	Q9H9S4	CB39L_HUMAN	calcium binding protein 39-like	135					cell cycle arrest|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol	protein binding				0		Lung NSC(96;2.11e-05)|Breast(56;0.00017)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.66e-09)|COAD - Colon adenocarcinoma(199;0.226)		ATCTGTGGGGCTTCATATCTA	0.338													23	56					0	0	1	0	0	
RCBTB1	55213	broad.mit.edu	37	13	50123608	50123608	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:50123608C>T	uc001vde.1	-	9	1292	c.1031G>A	c.(1030-1032)CGC>CAC	p.R344H		NM_018191	NP_060661	Q8NDN9	RCBT1_HUMAN	regulator of chromosome condensation (RCC1) and	344	RCC1 6.				cell cycle|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(1)	1		Lung NSC(96;2.1e-05)|Breast(56;0.00015)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;4.7e-09)		AGACAGGAGGCGCCACGAGAC	0.597													16	32					0	0	1	0	0	
LOC220429	220429	broad.mit.edu	37	13	50465227	50465227	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:50465227G>A	uc001vdk.2	+	1	683	c.501G>A	c.(499-501)GCG>GCA	p.A167A		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						AGGTGATGGCGGATATTTCCA	0.368													38	102					0	0	1	0	0	
LOC220429	220429	broad.mit.edu	37	13	50466268	50466268	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:50466268G>A	uc001vdk.2	+	1	1724	c.1542G>A	c.(1540-1542)GAG>GAA	p.E514E		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						TTGGCAGAGAGCATTCCTCAT	0.408													36	92					0	0	1	0	0	
TRIM13	10206	broad.mit.edu	37	13	50587166	50587166	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:50587166T>G	uc001vdq.1	+	3	1403	c.1090T>G	c.(1090-1092)TTC>GTC	p.F364V	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|KCNRG_uc001vdt.2_5'Flank|KCNRG_uc001vdu.2_5'Flank|TRIM13_uc001vdp.1_Missense_Mutation_p.F367V|TRIM13_uc001vdr.1_Missense_Mutation_p.F364V|TRIM13_uc001vds.1_Missense_Mutation_p.F364V	NM_052811	NP_434698	O60858	TRI13_HUMAN	ret finger protein 2 isoform 1	364					anatomical structure morphogenesis|ER-associated protein catabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination	cytoplasm|endoplasmic reticulum membrane|integral to membrane	protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.53e-10)|COAD - Colon adenocarcinoma(199;0.205)		AACAGCCGATTTCATAGAACA	0.373													65	118					0	0	1	0	0	
MIR16-1	406950	broad.mit.edu	37	13	50623163	50623163	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:50623163C>T	hsa-mir-16-1|MI0000070	-			c.35C>T			DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|DLEU2_uc001vdw.2_Intron|DLEU2_uc001vdx.2_Intron|DLEU2_uc001vdy.2_Intron|DLEU2_uc001vdz.2_Intron|uc001vea.1_RNA																	0						AGAATCTTAACGCCAATATTT	0.323													38	79					0	0	1	0	0	
CCDC70	83446	broad.mit.edu	37	13	52439685	52439685	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:52439685T>G	uc001vfu.3	+	2	467	c.171T>G	c.(169-171)ATT>ATG	p.I57M	uc010tgr.1_RNA	NM_031290	NP_112580	Q6NSX1	CCD70_HUMAN	coiled-coil domain containing 70 precursor	57						extracellular region|plasma membrane					0		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.0107)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;2.4e-08)		AGATGAAAATTTTTCGTGAAA	0.502													42	75					0	0	1	0	0	
ATP7B	540	broad.mit.edu	37	13	52511798	52511798	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:52511798G>T	uc001vfw.2	-	18	3874	c.3717C>A	c.(3715-3717)GTC>GTA	p.V1239V	ATP7B_uc010adv.2_Silent_p.V809V|ATP7B_uc001vfx.2_Silent_p.V1032V|ATP7B_uc001vfy.2_Silent_p.V1128V|ATP7B_uc010tgt.1_Silent_p.V1174V|ATP7B_uc010tgu.1_Silent_p.V1191V|ATP7B_uc010tgv.1_Silent_p.V1161V|ATP7B_uc001vfv.2_Silent_p.V511V|ATP7B_uc010tgs.1_Silent_p.V450V	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1239	Cytoplasmic (Potential).		V -> G (in WD).		ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CCTCTGCAAAGACTTTGTTGA	0.517									Wilson_disease				38	71					1.58521e-26	1.91845e-26	1	1	0	
ATP7B	540	broad.mit.edu	37	13	52518371	52518371	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:52518371G>T	uc001vfw.2	-	14	3274	c.3117C>A	c.(3115-3117)GTC>GTA	p.V1039V	ATP7B_uc010adv.2_Silent_p.V609V|ATP7B_uc001vfx.2_Silent_p.V832V|ATP7B_uc001vfy.2_Silent_p.V928V|ATP7B_uc010tgt.1_Silent_p.V974V|ATP7B_uc010tgu.1_Silent_p.V991V|ATP7B_uc010tgv.1_Silent_p.V961V|ATP7B_uc001vfv.2_Silent_p.V311V|ATP7B_uc010tgs.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1039	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		GCACCCGCATGACCCTGGGGA	0.577									Wilson_disease				14	30					1.52009e-12	1.68689e-12	1	1	0	
NEK5	341676	broad.mit.edu	37	13	52684696	52684696	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:52684696T>C	uc001vge.2	-	6	470	c.330A>G	c.(328-330)GTA>GTG	p.V110V	NEK5_uc001vgf.2_Silent_p.V110V	NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	110	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		GAGAAATCTGTACAAACCAAC	0.388													12	22					0	0	1	0	0	
CKAP2	26586	broad.mit.edu	37	13	53035861	53035861	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:53035861A>C	uc001vgv.2	+	4	1100	c.903A>C	c.(901-903)AAA>AAC	p.K301N	CKAP2_uc001vgt.2_Missense_Mutation_p.K300N|CKAP2_uc001vgu.2_Missense_Mutation_p.K300N|CKAP2_uc010tha.1_Missense_Mutation_p.K252N	NM_001098525	NP_001091995	Q8WWK9	CKAP2_HUMAN	cytoskeleton associated protein 2 isoform 2	301					apoptosis|cell cycle	centrosome|microtubule|spindle pole				ovary(1)|skin(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00212)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.6e-08)		CTAGTGTCAAAACCAGTTCTT	0.363													41	78					0	0	1	0	0	
TPTE2P3	220115	broad.mit.edu	37	13	53096837	53096837	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:53096837G>A	uc001vgw.2	+	11		c.1214G>A				NR_002793				Homo sapiens TPTE and PTEN homologous inositol lipid phosphatase pseudogene, mRNA (cDNA clone IMAGE:5298506), with apparent retained intron.												0						TTCACTGATAGCAAAGTTTAT	0.299													12	28					0	0	1	0	0	
DIAPH3	81624	broad.mit.edu	37	13	60565365	60565365	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:60565365C>A	uc001vht.2	-	12	1507	c.1288G>T	c.(1288-1290)GAA>TAA	p.E430*	DIAPH3_uc001vhu.2_Nonsense_Mutation_p.E167*|DIAPH3_uc001vhv.2_Nonsense_Mutation_p.E8*	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	430	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		GCTCTAGTTTCTTTAACTGTG	0.303													26	79					1.77063e-15	2.01907e-15	1	1	0	
DIAPH3	81624	broad.mit.edu	37	13	60590074	60590074	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:60590074C>T	uc001vht.2	-	7	963	c.744G>A	c.(742-744)CAG>CAA	p.Q248Q	DIAPH3_uc001vhu.2_5'Flank|DIAPH3_uc001vhw.1_Silent_p.Q237Q|DIAPH3_uc010aed.1_Silent_p.Q202Q|DIAPH3_uc010aee.1_Silent_p.Q178Q|uc001vhx.2_Intron|uc001vhy.2_Intron	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	248	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		CTTTTAGACACTGTATGACTT	0.313													8	26					0	0	1	0	0	
TDRD3	81550	broad.mit.edu	37	13	61103068	61103068	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:61103068T>C	uc001via.2	+	11	2218	c.1430T>C	c.(1429-1431)GTA>GCA	p.V477A	TDRD3_uc010aef.2_Missense_Mutation_p.V302A|TDRD3_uc001vhz.3_Missense_Mutation_p.V477A|TDRD3_uc010aeg.2_Missense_Mutation_p.V570A|TDRD3_uc001vib.3_Missense_Mutation_p.V476A	NM_030794	NP_110421	Q9H7E2	TDRD3_HUMAN	tudor domain containing 3 isoform 2	477					chromatin modification	cytoplasm|nucleus	chromatin binding|methylated histone residue binding|nucleic acid binding|transcription coactivator activity			upper_aerodigestive_tract(1)|skin(1)	2		Prostate(109;0.173)|Breast(118;0.174)		GBM - Glioblastoma multiforme(99;0.000291)		CATTTTAATGTAAATACTGAT	0.308													13	22					0	0	1	0	0	
TDRD3	81550	broad.mit.edu	37	13	61103094	61103094	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:61103094C>T	uc001via.2	+	11	2244	c.1456C>T	c.(1456-1458)CGA>TGA	p.R486*	TDRD3_uc010aef.2_Nonsense_Mutation_p.R311*|TDRD3_uc001vhz.3_Nonsense_Mutation_p.R486*|TDRD3_uc010aeg.2_Nonsense_Mutation_p.R579*|TDRD3_uc001vib.3_Nonsense_Mutation_p.R485*	NM_030794	NP_110421	Q9H7E2	TDRD3_HUMAN	tudor domain containing 3 isoform 2	486					chromatin modification	cytoplasm|nucleus	chromatin binding|methylated histone residue binding|nucleic acid binding|transcription coactivator activity			upper_aerodigestive_tract(1)|skin(1)	2		Prostate(109;0.173)|Breast(118;0.174)		GBM - Glioblastoma multiforme(99;0.000291)		GAATCCAGTTCGAAGTAATAG	0.338													16	24					0	0	1	0	0	
PCDH20	64881	broad.mit.edu	37	13	61986425	61986425	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:61986425C>A	uc001vid.3	-	2	2171	c.1807G>T	c.(1807-1809)GAA>TAA	p.E603*	PCDH20_uc010thj.1_Nonsense_Mutation_p.E603*	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	576	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		CTGTACTTTTCTTTCTCTTCT	0.443													33	56					1.62565e-12	1.80183e-12	1	1	0	
PCDH9	5101	broad.mit.edu	37	13	67800785	67800785	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:67800785C>T	uc001vik.2	-	2	2480	c.1788G>A	c.(1786-1788)GTG>GTA	p.V596V	PCDH9_uc001vil.2_Silent_p.V596V|PCDH9_uc010thl.1_Silent_p.V596V|PCDH9_uc001vin.3_Silent_p.V596V	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	596	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		CTGCATCTGTCACTGTGATTA	0.373													52	132					0	0	1	0	0	
PCDH9	5101	broad.mit.edu	37	13	67802424	67802424	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:67802424G>T	uc001vik.2	-	2	841	c.149C>A	c.(148-150)TCT>TAT	p.S50Y	PCDH9_uc001vil.2_Missense_Mutation_p.S50Y|PCDH9_uc010thl.1_Missense_Mutation_p.S50Y|PCDH9_uc001vin.3_Missense_Mutation_p.S50Y	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	50	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		ATTGATGTGAGAAATGTTCAG	0.473													27	74					2.12542e-12	2.35257e-12	1	1	0	
DACH1	1602	broad.mit.edu	37	13	72204778	72204778	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:72204778T>G	uc010thn.1	-	4	1459	c.1036A>C	c.(1036-1038)AAA>CAA	p.K346Q	DACH1_uc010tho.1_Missense_Mutation_p.K346Q|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	346	Interaction with SIX6 and HDAC3 (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AATTTGATTTTTTTCACCTTC	0.269													98	141					0	0	1	0	0	
DACH1	1602	broad.mit.edu	37	13	72440841	72440841	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:72440841A>G	uc010thn.1	-	1	490	c.67T>C	c.(67-69)TCT>CCT	p.S23P	DACH1_uc010tho.1_Missense_Mutation_p.S23P|DACH1_uc010thp.1_Missense_Mutation_p.S23P	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	23					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		GAGGAAGCAGACGTGGAGATT	0.632													9	16					0	0	1	0	0	
DIS3	22894	broad.mit.edu	37	13	73347916	73347916	+	Missense_Mutation	SNP	C	T	T	rs139907646	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:73347916C>T	uc001vix.3	-	8	1519	c.1145G>A	c.(1144-1146)CGA>CAA	p.R382Q	DIS3_uc001viy.3_Missense_Mutation_p.R352Q|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	382					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		TATGCGAATTCGAGGGATTCT	0.383										Multiple Myeloma(4;0.011)			24	60					0	0	1	0	0	
PIBF1	10464	broad.mit.edu	37	13	73547748	73547748	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:73547748T>C	uc001vjc.2	+	16	2289	c.1984T>C	c.(1984-1986)TCA>CCA	p.S662P	PIBF1_uc001vjb.2_Missense_Mutation_p.S662P|PIBF1_uc010aep.2_Missense_Mutation_p.S121P	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	662						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		TAAAGAAAAGTCAGCTTTACT	0.244													35	67					0	0	1	0	0	
LOC647288	647288	broad.mit.edu	37	13	75814028	75814028	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:75814028T>G	uc010ths.1	-	1	490	c.449A>C	c.(448-450)AAA>ACA	p.K150T		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCTTAACTCTTTTTCTAGACA	0.398													65	133					0	0	1	0	0	
COMMD6	170622	broad.mit.edu	37	13	76104344	76104344	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:76104344A>C	uc001vjo.1	-	3	163	c.113T>G	c.(112-114)CTT>CGT	p.L38R	COMMD6_uc001vjn.1_Missense_Mutation_p.L38R|COMMD6_uc010aet.1_RNA|COMMD6_uc001vjp.1_RNA	NM_203495	NP_987091	Q7Z4G1	COMD6_HUMAN	COMM domain containing 6 isoform b	38	COMM.					cytoplasm|nucleus	protein binding				0		Breast(118;0.0979)|Prostate(6;0.122)		GBM - Glioblastoma multiforme(99;0.0104)		AGGATACTTAAGAGATCTGCA	0.388													38	72					0	0	1	0	0	
LMO7	4008	broad.mit.edu	37	13	76393550	76393550	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:76393550C>T	uc001vjv.2	+	10	2147	c.1387C>T	c.(1387-1389)CGT>TGT	p.R463C	LMO7_uc010thv.1_Missense_Mutation_p.R414C|LMO7_uc001vjt.1_Missense_Mutation_p.R362C|LMO7_uc010thw.1_Missense_Mutation_p.R313C|LMO7_uc001vjw.1_Missense_Mutation_p.R369C	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	748						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		ATGGAAAGATCGTCGAAAAAG	0.408													30	53					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	13	76445175	76445175	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:76445175T>G	uc001vjy.1	+	1		c.2T>G								Homo sapiens cDNA FLJ35379 fis, clone SKMUS2006481.																		AACTAAAAGTTTTATTCTTTT	0.418											OREG0022447	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	28					0	0	1	0	0	
MYCBP2	23077	broad.mit.edu	37	13	77751940	77751940	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:77751940G>T	uc001vkf.2	-	36	5260	c.5169C>A	c.(5167-5169)TTC>TTA	p.F1723L	MYCBP2_uc010aev.2_Missense_Mutation_p.F1127L	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1723					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CATAGACAGAGAAACCAACCA	0.408													33	46					3.90053e-15	4.43362e-15	1	1	0	
MYCBP2	23077	broad.mit.edu	37	13	77817210	77817210	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:77817210T>G	uc001vkf.2	-	18	2590	c.2499A>C	c.(2497-2499)AGA>AGC	p.R833S	MYCBP2_uc010aev.2_Missense_Mutation_p.R237S	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	833					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CTTCCTCTAATCTGTGCCTTC	0.423													28	67					0	0	1	0	0	
SCEL	8796	broad.mit.edu	37	13	78178498	78178498	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:78178498G>T	uc001vki.2	+	19	1275	c.1105G>T	c.(1105-1107)GAC>TAC	p.D369Y	SCEL_uc001vkj.2_Missense_Mutation_p.D349Y|SCEL_uc010thx.1_Intron	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	369	16 X approximate tandem repeats.|7.				embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		AAGAAAAAAAGACCTTGATGG	0.313													44	72					4.67007e-22	5.55902e-22	1	1	0	
SCEL	8796	broad.mit.edu	37	13	78188041	78188041	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:78188041C>A	uc001vki.2	+	24	1572	c.1402C>A	c.(1402-1404)CTT>ATT	p.L468I	SCEL_uc001vkj.2_Missense_Mutation_p.L448I|SCEL_uc010thx.1_Missense_Mutation_p.L426I	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	468	16 X approximate tandem repeats.|12.				embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		TGAACAAGGTCTTGATGAACA	0.353													33	76					2.47316e-13	2.76362e-13	1	1	0	
EDNRB	1910	broad.mit.edu	37	13	78472431	78472431	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:78472431T>C	uc001vko.2	-	7	1491	c.1233A>G	c.(1231-1233)AAA>AAG	p.K411K	EDNRB_uc001vkq.1_Silent_p.K411K|uc001vkn.1_Intron|EDNRB_uc010aez.1_Intron|EDNRB_uc001vkp.1_Silent_p.K494K	NM_001122659	NP_001116131	P24530	EDNRB_HUMAN	endothelin receptor type B isoform 1 precursor	411	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|enteric nervous system development|enteric smooth muscle cell differentiation|macrophage chemotaxis|negative regulation of adenylate cyclase activity|negative regulation of cellular protein metabolic process|negative regulation of neuron maturation|negative regulation of transcription from RNA polymerase II promoter|vein smooth muscle contraction	integral to plasma membrane	endothelin-B receptor activity|peptide hormone binding				0		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0933)	Bosentan(DB00559)	CCAAGGACTGTTTTTCTTCAA	0.393													18	43					0	0	1	0	0	
SLITRK1	114798	broad.mit.edu	37	13	84453915	84453915	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:84453915C>A	uc001vlk.2	-	1	2614	c.1728G>T	c.(1726-1728)GAG>GAT	p.E576D		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	576	LRRCT 2.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GAGGGCAGATCTCGTCATTGG	0.547													16	27					1.15088e-07	1.20949e-07	1	1	0	
SLITRK1	114798	broad.mit.edu	37	13	84453995	84453995	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:84453995C>T	uc001vlk.2	-	1	2534	c.1648G>A	c.(1648-1650)GAA>AAA	p.E550K		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	550	LRRCT 2.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		ATCAGCACTTCGGAACCCAAG	0.532													6	42					0	0	1	0	0	
SLITRK1	114798	broad.mit.edu	37	13	84454115	84454115	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:84454115G>T	uc001vlk.2	-	1	2414	c.1528C>A	c.(1528-1530)CCG>ACG	p.P510T		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	510	Extracellular (Potential).|LRR 12.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CCTGCCACCGGGAGGTACATG	0.547													20	42					4.96729e-08	5.24652e-08	1	1	0	
SLITRK1	114798	broad.mit.edu	37	13	84454919	84454919	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:84454919C>T	uc001vlk.2	-	1	1610	c.724G>A	c.(724-726)GAA>AAA	p.E242K		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	242	Extracellular (Potential).|LRRCT 1.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GTGGGGGCTTCGCAGACCACT	0.547													28	46					0	0	1	0	0	
SLITRK1	114798	broad.mit.edu	37	13	84455355	84455355	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:84455355T>G	uc001vlk.2	-	1	1174	c.288A>C	c.(286-288)GAA>GAC	p.E96D		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	96	Extracellular (Potential).|LRR 2.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CCGGAACGATTTCATGCAAGC	0.453													43	80					0	0	1	0	0	
SLITRK5	26050	broad.mit.edu	37	13	88328019	88328019	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:88328019C>A	uc001vln.2	+	2	595	c.376C>A	c.(376-378)CAT>AAT	p.H126N	SLITRK5_uc010tic.1_Intron	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	126	LRR 2.|Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CGGGGCTTTCCATGGGCTACG	0.448													62	106					1.55088e-19	1.82331e-19	1	1	0	
SLITRK5	26050	broad.mit.edu	37	13	88328996	88328996	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:88328996C>T	uc001vln.2	+	2	1572	c.1353C>T	c.(1351-1353)CGC>CGT	p.R451R	SLITRK5_uc010tic.1_Silent_p.R210R	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	451	Extracellular (Potential).|LRR 8.					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					TCCAGGACCGCGCTTTCGGGG	0.597													25	49					0	0	1	0	0	
SLITRK5	26050	broad.mit.edu	37	13	88329437	88329437	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:88329437C>T	uc001vln.2	+	2	2013	c.1794C>T	c.(1792-1794)TTC>TTT	p.F598F	SLITRK5_uc010tic.1_Silent_p.F357F	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	598	LRRCT 2.|Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CCAAAAAATTCGCTGAGACCG	0.547													50	136					0	0	1	0	0	
GPC6	10082	broad.mit.edu	37	13	94958302	94958302	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:94958302T>G	uc001vlt.2	+	6	1709	c.1077T>G	c.(1075-1077)AAT>AAG	p.N359K	GPC6_uc010tig.1_Missense_Mutation_p.N359K	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	359						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				CTCCTGAAAATTTTAATACAC	0.483													59	132					0	0	1	0	0	
DCT	1638	broad.mit.edu	37	13	95114332	95114332	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:95114332T>C	uc001vlv.3	-	5	1402	c.975A>G	c.(973-975)ATA>ATG	p.I325M	DCT_uc010afh.2_Missense_Mutation_p.I325M	NM_001922	NP_001913	P40126	TYRP2_HUMAN	dopachrome tautomerase isoform 1	325	Lumenal, melanosome (Potential).				epidermis development|melanin biosynthetic process from tyrosine	cytosol|integral to membrane|melanosome membrane|microsome	copper ion binding|dopachrome isomerase activity|oxidoreductase activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;3.71e-42)|all_epithelial(2;3.76e-31)|all_lung(2;5.16e-14)|Lung NSC(4;1.33e-13)|Breast(118;0.0013)|Hepatocellular(115;0.00886)|Renal(2;0.00988)		COAD - Colon adenocarcinoma(199;7.07e-05)|GBM - Glioblastoma multiforme(99;0.000472)		GGCAATCTCGTATGTCTTTTA	0.468													19	38					0	0	1	0	0	
ABCC4	10257	broad.mit.edu	37	13	95840745	95840745	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:95840745C>T	uc001vmd.3	-	10	1434	c.1315G>A	c.(1315-1317)GAA>AAA	p.E439K	ABCC4_uc010afk.2_Missense_Mutation_p.E439K|ABCC4_uc001vme.2_Missense_Mutation_p.E439K|ABCC4_uc010tih.1_Missense_Mutation_p.E364K|ABCC4_uc001vmf.2_Missense_Mutation_p.E396K|ABCC4_uc010afl.1_Missense_Mutation_p.E396K|ABCC4_uc010afm.1_Missense_Mutation_p.E452K	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	439	ABC transporter 1.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	GCTAACAATTCGCCAGGTCTG	0.453													27	77					0	0	1	0	0	
CLDN10	9071	broad.mit.edu	37	13	96212483	96212483	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:96212483C>T	uc001vmh.2	+	2	379	c.318C>T	c.(316-318)GTC>GTT	p.V106V	CLDN10_uc001vmg.2_Silent_p.V104V|CLDN10_uc010tii.1_Silent_p.V85V	NM_006984	NP_008915	P78369	CLD10_HUMAN	claudin 10 isoform b	106	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.18)			GTACCAAAGTCGGAGGCTCCG	0.423													40	60					0	0	1	0	0	
DZIP1	22873	broad.mit.edu	37	13	96293613	96293613	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:96293613T>G	uc001vmk.2	-	5	1385	c.533A>C	c.(532-534)AAA>ACA	p.K178T	DZIP1_uc001vml.2_Missense_Mutation_p.K178T|DZIP1_uc001vmn.2_Missense_Mutation_p.K167T	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	178					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			CTTCCGGCGTTTGCACTCTTC	0.582													26	25					0	0	1	0	0	
RNF113B	140432	broad.mit.edu	37	13	98828929	98828929	+	Missense_Mutation	SNP	G	A	A	rs114102979	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:98828929G>A	uc001vnk.2	-	1	593	c.562C>T	c.(562-564)CGC>TGC	p.R188C	FARP1_uc001vnh.2_Intron|FARP1_uc001vni.2_Intron|FARP1_uc001vnj.2_Intron	NM_178861	NP_849192	Q8IZP6	R113B_HUMAN	ring finger protein 113B	188							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.13)			TAATCCCAGCGCACAGTGGCG	0.602													35	52					0	0	1	0	0	
STK24	8428	broad.mit.edu	37	13	99115970	99115970	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:99115970C>T	uc001vnm.1	-	7	1175	c.940G>A	c.(940-942)GAC>AAC	p.D314N	STK24_uc001vnn.1_Missense_Mutation_p.D302N|STK24_uc010tim.1_Missense_Mutation_p.D283N	NM_003576	NP_003567	Q9Y6E0	STK24_HUMAN	serine/threonine kinase 24 isoform a	314					cellular component disassembly involved in apoptosis|signal transduction	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			GAGCTCGAGTCGTCATGGCTC	0.527													22	42					0	0	1	0	0	
SLC15A1	6564	broad.mit.edu	37	13	99358407	99358407	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:99358407G>A	uc001vno.2	-	16	1327	c.1250C>T	c.(1249-1251)ACA>ATA	p.T417I		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	417	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TGGGCCAAGTGTCACCATCTC	0.373													31	55					0	0	1	0	0	
DOCK9	23348	broad.mit.edu	37	13	99505740	99505740	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:99505740G>A	uc001vnt.2	-	35	3926	c.3871C>T	c.(3871-3873)CGC>TGC	p.R1291C	DOCK9_uc001vnw.2_Missense_Mutation_p.R1290C|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.R1291C|DOCK9_uc010tip.1_5'UTR|DOCK9_uc010tiq.1_Missense_Mutation_p.R269C	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1291					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TTATCACAGCGAACCACGGAA	0.373													95	150					0	0	1	0	0	
DOCK9	23348	broad.mit.edu	37	13	99532212	99532212	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:99532212A>C	uc001vnt.2	-	27	2941	c.2886T>G	c.(2884-2886)TTT>TTG	p.F962L	DOCK9_uc001vnw.2_Missense_Mutation_p.F961L|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.F962L|DOCK9_uc010tis.1_Missense_Mutation_p.F961L|DOCK9_uc010tit.1_Missense_Mutation_p.F962L|DOCK9_uc010afu.1_Missense_Mutation_p.F808L	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	962					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CATCAAAGAAAAACCATGAGT	0.259													23	39					0	0	1	0	0	
TM9SF2	9375	broad.mit.edu	37	13	100191723	100191723	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:100191723A>C	uc001voj.1	+	7	873	c.740A>C	c.(739-741)AAA>ACA	p.K247T	TM9SF2_uc010afz.1_Intron	NM_004800	NP_004791	Q99805	TM9S2_HUMAN	transmembrane 9 superfamily member 2 precursor	247	Lumenal (Potential).				transport	endosome membrane|integral to plasma membrane				ovary(1)	1	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.218)					CATATAGATAAACCAGACTGC	0.398													48	132					0	0	1	0	0	
TM9SF2	9375	broad.mit.edu	37	13	100201466	100201466	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:100201466C>A	uc001voj.1	+	12	1451	c.1318C>A	c.(1318-1320)CTT>ATT	p.L440I	TM9SF2_uc010afz.1_Missense_Mutation_p.L275I	NM_004800	NP_004791	Q99805	TM9S2_HUMAN	transmembrane 9 superfamily member 2 precursor	440	Helical; (Potential).				transport	endosome membrane|integral to plasma membrane				ovary(1)	1	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.218)					AACATCATTTCTTTGTCCTGG	0.318													32	60					1.07637e-12	1.19625e-12	1	1	0	
NALCN	259232	broad.mit.edu	37	13	101712261	101712261	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:101712261A>C	uc001vox.1	-	42	5003	c.4814T>G	c.(4813-4815)CTG>CGG	p.L1605R		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1605	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AAACCGGCTCAGCTCTTGCTG	0.527													29	37					0	0	1	0	0	
NALCN	259232	broad.mit.edu	37	13	101735209	101735209	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:101735209A>G	uc001vox.1	-	33	3905	c.3716T>C	c.(3715-3717)GTA>GCA	p.V1239A		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1239	Helical; Name=S2 of repeat IV; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TGCCAAAGGTACGGTCACCGG	0.517													38	77					0	0	1	0	0	
NALCN	259232	broad.mit.edu	37	13	101742314	101742314	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:101742314C>T	uc001vox.1	-	29	3462	c.3273G>A	c.(3271-3273)GCG>GCA	p.A1091A		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1091	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCCGAGGATTCGCCCTGCGAT	0.448													93	215					0	0	1	0	0	
NALCN	259232	broad.mit.edu	37	13	101755555	101755555	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:101755555C>A	uc001vox.1	-	26	3214	c.3025G>T	c.(3025-3027)GAA>TAA	p.E1009*		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1009	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CTGAAAAGTTCTCGAACAACT	0.453													49	112					3.86361e-14	4.34762e-14	1	1	0	
NALCN	259232	broad.mit.edu	37	13	101797193	101797193	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:101797193G>A	uc001vox.1	-	16	2083	c.1894C>T	c.(1894-1896)CGA>TGA	p.R632*	NALCN_uc001voy.2_Nonsense_Mutation_p.R347*	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	632	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCAAAGATTCGCAGGCGTAAA	0.353													64	147					0	0	1	0	0	
ITGBL1	9358	broad.mit.edu	37	13	102105271	102105271	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:102105271G>A	uc001vpb.2	+	1	306	c.87G>A	c.(85-87)TCG>TCA	p.S29S	ITGBL1_uc010agb.2_Silent_p.S29S|ITGBL1_uc001vpc.3_5'UTR	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	29					cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AAAGCTTCTCGCCATCTCTGA	0.547													7	93					0	0	1	0	0	
ITGBL1	9358	broad.mit.edu	37	13	102359183	102359183	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:102359183T>G	uc001vpb.2	+	9	1429	c.1210T>G	c.(1210-1212)TGT>GGT	p.C404G	ITGBL1_uc010agb.2_Missense_Mutation_p.C355G|ITGBL1_uc001vpc.3_Missense_Mutation_p.C263G	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	404	VIII.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCCGCGGAAGTGTAACATGAC	0.517													43	71					0	0	1	0	0	
TPP2	7174	broad.mit.edu	37	13	103295587	103295587	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:103295587C>T	uc001vpi.3	+	17	2139	c.2036C>T	c.(2035-2037)TCG>TTG	p.S679L		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	679					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ACAGTGTGTTCGTGTTCTTCT	0.363													15	31					0	0	1	0	0	
ERCC5	2073	broad.mit.edu	37	13	103459815	103459815	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:103459815T>G	uc001vpu.1	+	1	320	c.198T>G	c.(196-198)ATT>ATG	p.I66M	BIVM_uc001vps.2_Missense_Mutation_p.I66M|BIVM_uc010agc.2_Intron|BIVM_uc001vpt.2_Missense_Mutation_p.I66M	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	Error:Variant_position_missing_in_P28715_after_alignment					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GGGAAAAAATTTATGCCATCT	0.468			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				40	75					0	0	1	0	0	
ERCC5	2073	broad.mit.edu	37	13	103506186	103506186	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:103506186A>G	uc001vpw.2	+	3	787	c.344A>G	c.(343-345)AAA>AGA	p.K115R	ERCC5_uc001vpu.1_Missense_Mutation_p.K569R|ERCC5_uc010tjb.1_Missense_Mutation_p.K115R|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Intron	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	115					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ACATTTTTGAAAAGACAAGCC	0.373			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				18	32					0	0	1	0	0	
ERCC5	2073	broad.mit.edu	37	13	103508441	103508441	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:103508441G>A	uc001vpw.2	+	5	950	c.507G>A	c.(505-507)ATG>ATA	p.M169I	ERCC5_uc001vpu.1_Missense_Mutation_p.M623I|ERCC5_uc010tjb.1_Missense_Mutation_p.M169I|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Missense_Mutation_p.M1I	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	169					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					AAGAAAGAATGAATCAAAAAC	0.279			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				31	58					0	0	1	0	0	
ERCC5	2073	broad.mit.edu	37	13	103513933	103513933	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:103513933T>C	uc001vpw.2	+	7	1192	c.749T>C	c.(748-750)GTC>GCC	p.V250A	ERCC5_uc001vpu.1_Missense_Mutation_p.V704A|ERCC5_uc010tjb.1_Missense_Mutation_p.V250A|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Missense_Mutation_p.V82A	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	250					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					ATAGAACATGTCCAAAAGGAA	0.408			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				28	87					0	0	1	0	0	
ERCC5	2073	broad.mit.edu	37	13	103524621	103524621	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:103524621T>A	uc001vpw.2	+	13	3195	c.2752T>A	c.(2752-2754)TTA>ATA	p.L918I	ERCC5_uc001vpu.1_Missense_Mutation_p.L1372I|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Missense_Mutation_p.L750I	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	918					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GAAAAAAAAATTACGGACATT	0.438			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				20	44					0	0	1	0	0	
DAOA	267012	broad.mit.edu	37	13	106124904	106124904	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:106124904G>T	uc001vqb.2	+	3	425	c.151G>T	c.(151-153)GGA>TGA	p.G51*	DAOA_uc010tjf.1_Translation_Start_Site|DAOA_uc001vpz.2_RNA|DAOA_uc010agd.2_RNA|DAOA_uc010tjg.1_Translation_Start_Site|DAOA_uc001vqc.2_RNA|DAOA_uc001vqe.2_RNA	NM_172370	NP_758958	P59103	DAOA_HUMAN	D-amino acid oxidase activator isoform 1	51						Golgi apparatus					0	Lung NSC(43;0.01)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					GACAGAAGAAGGAAGAGAGAC	0.383													16	46					6.94344e-10	7.49515e-10	1	1	0	
ARGLU1	55082	broad.mit.edu	37	13	107196385	107196385	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:107196385A>G	uc001vqk.3	-	4	1028	c.781T>C	c.(781-783)TCC>CCC	p.S261P		NM_018011	NP_060481	Q9NWB6	ARGL1_HUMAN	arginine and glutamate rich 1	261											0	Lung NSC(43;0.015)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					TTTGGCCTGGACTTCCCCTTG	0.284													8	31					0	0	1	0	0	
FAM155A	728215	broad.mit.edu	37	13	107863091	107863091	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:107863091C>T	uc001vql.2	-	2	1444	c.928G>A	c.(928-930)GCC>ACC	p.A310T		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	310						integral to membrane	binding			skin(1)	1						CAGAGCCAGGCTTTGTAGACA	0.428											OREG0022506	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	47					0	0	1	0	0	
TNFSF13B	10673	broad.mit.edu	37	13	108955863	108955863	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:108955863T>C	uc001vqr.2	+	5	923	c.656T>C	c.(655-657)GTC>GCC	p.V219A	TNFSF13B_uc010agj.2_Missense_Mutation_p.V200A	NM_006573	NP_006564	Q9Y275	TN13B_HUMAN	tumor necrosis factor superfamily, member 13b	219	Extracellular (Potential).				cell proliferation|immune response|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity|tumor necrosis factor receptor binding				0	all_lung(23;0.000396)|all_neural(89;0.00256)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00902)|Lung SC(71;0.104)		all cancers(43;0.184)|BRCA - Breast invasive adenocarcinoma(86;0.19)			AAGGTCCATGTCTTTGGGGAT	0.373													42	91					0	0	1	0	0	
MYO16	23026	broad.mit.edu	37	13	109753197	109753197	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:109753197C>T	uc001vqt.1	+	28	3460	c.3334C>T	c.(3334-3336)CGA>TGA	p.R1112*	MYO16_uc010agk.1_Nonsense_Mutation_p.R1134*|MYO16_uc010tjh.1_Nonsense_Mutation_p.R624*	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1112	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CGAGCGATGTCGACTTGTTCT	0.438													17	48					0	0	1	0	0	
COL4A1	1282	broad.mit.edu	37	13	110831355	110831355	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:110831355G>A	uc001vqw.3	-	31	2495	c.2373C>T	c.(2371-2373)GGC>GGT	p.G791G	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	791	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			ACCCCACGGAGCCTGGCAATC	0.607													6	15					0	0	1	0	0	
CARS2	79587	broad.mit.edu	37	13	111335429	111335429	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:111335429G>A	uc001vrd.2	-	6	664	c.624C>T	c.(622-624)GTC>GTT	p.V208V	CARS2_uc010tjm.1_RNA	NM_024537	NP_078813	Q9HA77	SYCM_HUMAN	cysteinyl-tRNA synthetase 2, mitochondrial	208				LVGVVPGPVGEPADSDK -> IGRRGPWSSPETSGLLTS (in Ref. 4; BAB93499).	cysteinyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|cysteine-tRNA ligase activity|metal ion binding				0	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.163)		L-Cysteine(DB00151)	GGACCACGCCGACCAATTTGC	0.527													31	66					0	0	1	0	0	
CARS2	79587	broad.mit.edu	37	13	111340140	111340140	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:111340140C>T	uc001vrd.2	-	5	539	c.499G>A	c.(499-501)GAA>AAA	p.E167K	CARS2_uc010tjm.1_RNA	NM_024537	NP_078813	Q9HA77	SYCM_HUMAN	cysteinyl-tRNA synthetase 2, mitochondrial	167					cysteinyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|cysteine-tRNA ligase activity|metal ion binding				0	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.163)		L-Cysteine(DB00151)	GGAATATTTTCGGTTACCCTC	0.453													77	139					0	0	1	0	0	
ING1	3621	broad.mit.edu	37	13	111372025	111372025	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:111372025C>T	uc001vri.2	+	2	1447	c.1015C>T	c.(1015-1017)CGA>TGA	p.R339*	ING1_uc001vrf.2_Nonsense_Mutation_p.R152*|ING1_uc001vrg.2_Nonsense_Mutation_p.R127*|ING1_uc001vrh.2_Nonsense_Mutation_p.R196*	NM_005537	NP_005528	Q9UK53	ING1_HUMAN	inhibitor of growth family, member 1 isoform D	339					cell cycle|negative regulation of cell growth|negative regulation of cell proliferation	nucleus	zinc ion binding			ovary(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.188)			CAAGGCGGAGCGAGAGGCGTC	0.627													20	44					0	0	1	0	0	
ANKRD10	55608	broad.mit.edu	37	13	111532320	111532320	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:111532320A>G	uc001vrn.2	-	6	1062	c.927T>C	c.(925-927)ATT>ATC	p.I309I	ANKRD10_uc001vrm.2_Silent_p.I46I|ANKRD10_uc001vrl.2_RNA	NM_017664	NP_060134	Q9NXR5	ANR10_HUMAN	ankyrin repeat domain 10	309										central_nervous_system(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		all cancers(43;0.0882)|BRCA - Breast invasive adenocarcinoma(86;0.188)|Lung(89;0.208)			ATCCACTGCTAATTCCGTTAG	0.542													49	53					0	0	1	0	0	
ANKRD10	55608	broad.mit.edu	37	13	111532435	111532435	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:111532435G>A	uc001vrn.2	-	6	947	c.812C>T	c.(811-813)TCG>TTG	p.S271L	ANKRD10_uc001vrm.2_Missense_Mutation_p.S8L|ANKRD10_uc001vrl.2_RNA	NM_017664	NP_060134	Q9NXR5	ANR10_HUMAN	ankyrin repeat domain 10	271										central_nervous_system(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		all cancers(43;0.0882)|BRCA - Breast invasive adenocarcinoma(86;0.188)|Lung(89;0.208)			CAATGTATTCGATACGGAGCT	0.443													16	35					0	0	1	0	0	
ARHGEF7	8874	broad.mit.edu	37	13	111935539	111935539	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:111935539G>A	uc001vrs.2	+	17	2092	c.1842G>A	c.(1840-1842)GCG>GCA	p.A614A	ARHGEF7_uc001vrr.2_Silent_p.A593A|ARHGEF7_uc001vrt.2_Silent_p.A564A|ARHGEF7_uc010tjn.1_RNA|ARHGEF7_uc001vru.1_Silent_p.A436A|ARHGEF7_uc001vrv.3_Silent_p.A436A|ARHGEF7_uc001vrw.3_Silent_p.A436A|ARHGEF7_uc001vrx.3_Silent_p.A436A|ARHGEF7_uc010tjo.1_Silent_p.A511A|ARHGEF7_uc010tjp.1_Silent_p.A358A|ARHGEF7_uc001vry.1_Silent_p.A30A|uc001vrz.1_5'Flank	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	614					apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			GCAAGCCCGCGCCGCTGACGC	0.682													6	4					0	0	1	0	0	
TUBGCP3	10426	broad.mit.edu	37	13	113170831	113170831	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:113170831G>A	uc001vse.1	-	17	2196	c.2009C>T	c.(2008-2010)GCG>GTG	p.A670V	TUBGCP3_uc010tjq.1_Missense_Mutation_p.A660V|TUBGCP3_uc001vsf.2_Missense_Mutation_p.A670V	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	670					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					CATCCGCTTCGCCCTCCAGAG	0.493													18	42					0	0	1	0	0	
ATP11A	23250	broad.mit.edu	37	13	113512583	113512583	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:113512583C>T	uc001vsi.3	+	22	2734	c.2646C>T	c.(2644-2646)CTC>CTT	p.L882L	ATP11A_uc001vsj.3_Silent_p.L882L|ATP11A_uc001vsm.1_Silent_p.L758L|ATP11A_uc010ago.2_RNA	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	882	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				TCTCTGAGCTCGTGCAGTACT	0.507													22	41					0	0	1	0	0	
ATP11A	23250	broad.mit.edu	37	13	113527971	113527971	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:113527971C>A	uc001vsi.3	+	27	3230	c.3142C>A	c.(3142-3144)CTC>ATC	p.L1048I	ATP11A_uc001vsj.3_Missense_Mutation_p.L1048I|ATP11A_uc010ago.2_RNA	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	1048	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				CTTTTCGCTTCTCTGGGGAGG	0.383											OREG0003854	type=REGULATORY REGION|Gene=ATP11A|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	16	30					1.15088e-07	1.20949e-07	1	1	0	
F7	2155	broad.mit.edu	37	13	113772894	113772894	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:113772894G>A	uc001vsv.2	+	9	1024	c.973G>A	c.(973-975)GAA>AAA	p.E325K	F7_uc001vsw.2_Missense_Mutation_p.E303K|F7_uc010tjt.1_Missense_Mutation_p.E256K	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	325	Peptidase S1.		E -> K (in FA7D).		anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	CTGCCTGCCCGAACGGACGTT	0.677													29	41					0	0	1	0	0	
FAM70B	348013	broad.mit.edu	37	13	114469097	114469097	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:114469097C>T	uc001vuh.2	+	2	83	c.56C>T	c.(55-57)TCG>TTG	p.S19L	FAM70B_uc010tkh.1_Missense_Mutation_p.S19L	NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	19						integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			GAAGGGCTTTCGAGGAGGAAG	0.637													44	74					0	0	1	0	0	
CDC16	8881	broad.mit.edu	37	13	115030682	115030682	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:115030682G>A	uc001vuk.1	+	17	1768	c.1570G>A	c.(1570-1572)GAA>AAA	p.E524K	CDC16_uc001vul.1_Missense_Mutation_p.E524K|CDC16_uc001vum.1_Missense_Mutation_p.E430K|CDC16_uc001vun.1_Missense_Mutation_p.E523K|CDC16_uc001vuo.1_Missense_Mutation_p.E472K	NM_003903	NP_003894	Q13042	CDC16_HUMAN	anaphase-promoting complex, subunit 6	524					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cell proliferation|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	binding				0	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)			TCATTGCATCGAAATGTACAT	0.333													52	98					0	0	1	0	0	
UPF3A	65110	broad.mit.edu	37	13	115070354	115070354	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:115070354T>G	uc001vup.2	+	10	1430	c.1393T>G	c.(1393-1395)TCG>GCG	p.S465A	UPF3A_uc001vuq.2_Missense_Mutation_p.S432A|UPF3A_uc001vus.2_RNA|UPF3A_uc001vur.2_RNA|UPF3A_uc001vut.2_Missense_Mutation_p.S264A|UPF3A_uc001vuu.2_Silent_p.V118V	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	465					mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		GGCAGAAGGTTCGGGGACTGG	0.597													22	36					0	0	1	0	0	
P704P	641455	broad.mit.edu	37	14	20019848	20019848	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20019848C>T	uc001vwc.3	-	1	425	c.373G>A	c.(373-375)GAC>AAC	p.D125N	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	125											0						AAAGCGCTGTCGTCGTAGTCT	0.597													74	144					0	0	1	0	0	
OR4Q3	441669	broad.mit.edu	37	14	20215602	20215602	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20215602G>T	uc010tkt.1	+	1	16	c.16G>T	c.(16-18)GAT>TAT	p.D6Y		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAAAGAACAAGATTCTAATGT	0.318													27	52					5.77227e-19	6.76681e-19	1	1	0	
OR4K2	390431	broad.mit.edu	37	14	20344641	20344641	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20344641C>T	uc001vwh.1	+	1	215	c.215C>T	c.(214-216)TCT>TTT	p.S72F		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATTGATATGTCTCTTGCTTCT	0.423													96	180					0	0	1	0	0	
OR4K5	79317	broad.mit.edu	37	14	20388847	20388847	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20388847T>C	uc010tkw.1	+	1	82	c.82T>C	c.(82-84)TTT>CTT	p.F28L		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTTTTCTATTTTTGTTTCTT	0.408													41	86					0	0	1	0	0	
OR4K1	79544	broad.mit.edu	37	14	20403995	20403995	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20403995C>T	uc001vwj.1	+	1	170	c.170C>T	c.(169-171)TCT>TTT	p.S57F		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	57	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CATTTGAACTCTCCTATGTAC	0.363													61	146					0	0	1	0	0	
OR4K15	81127	broad.mit.edu	37	14	20444053	20444053	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20444053T>A	uc010tkx.1	+	1	376	c.376T>A	c.(376-378)TTC>ATC	p.F126I		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	126	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F126Y(1)		ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGCCCAGATTTTCTTTGTTCA	0.438													66	126					0	0	1	0	0	
OR4K17	390436	broad.mit.edu	37	14	20586157	20586157	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20586157C>T	uc001vwo.1	+	1	592	c.592C>T	c.(592-594)CCC>TCC	p.P198S		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TGTGAACTTGCCCTTTTGTGG	0.428													63	119					0	0	1	0	0	
OR11H6	122748	broad.mit.edu	37	14	20692668	20692668	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20692668C>T	uc010tlc.1	+	1	800	c.800C>T	c.(799-801)TCT>TTT	p.S267F		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	267	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		ATGGTGGTGTCTCTATTCTAT	0.478													35	62					0	0	1	0	0	
TTC5	91875	broad.mit.edu	37	14	20767028	20767028	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20767028A>G	uc001vwt.2	-	5	624	c.567T>C	c.(565-567)TAT>TAC	p.Y189Y	TTC5_uc001vwu.2_Silent_p.Y46Y	NM_138376	NP_612385	Q8N0Z6	TTC5_HUMAN	tetratricopeptide repeat domain 5	189	TPR 3.				DNA repair	cytoplasm|nucleus	binding			ovary(1)	1	all_cancers(95;0.00092)		Epithelial(56;1.1e-06)|all cancers(55;8.07e-06)	GBM - Glioblastoma multiforme(265;0.0106)		AAAGGGAAAGATATGAATTCC	0.408													18	37					0	0	1	0	0	
PARP2	10038	broad.mit.edu	37	14	20825671	20825671	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20825671C>T	uc001vxc.2	+	15	1612	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F	PARP2_uc001vxd.2_Silent_p.F515F|PARP2_uc001vxb.1_Silent_p.F528F	NM_005484	NP_005475	Q9UGN5	PARP2_HUMAN	poly (ADP-ribose) polymerase family, member 2	528	PARP catalytic.				protein ADP-ribosylation	nucleolus|nucleoplasm	DNA binding|NAD+ ADP-ribosyltransferase activity			ovary(1)|pancreas(1)	2	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;5.34e-07)|all cancers(55;3.7e-06)	GBM - Glioblastoma multiforme(265;0.00888)|READ - Rectum adenocarcinoma(17;0.0649)		CTGCCCACTTCGTCACCCTGT	0.488								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					22	64					0	0	1	0	0	
TEP1	7011	broad.mit.edu	37	14	20848099	20848099	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20848099C>A	uc001vxe.2	-	35	5157	c.5117G>T	c.(5116-5118)AGA>ATA	p.R1706I	TEP1_uc010ahk.2_Missense_Mutation_p.R1049I|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.R1598I|TEP1_uc010tlh.1_Missense_Mutation_p.R44I	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1706	WD 2.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CTGCCAAGTTCTCAGGTCCAA	0.522													21	25					4.63292e-17	5.35151e-17	1	1	0	
TEP1	7011	broad.mit.edu	37	14	20854649	20854649	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:20854649C>T	uc001vxe.2	-	19	2858	c.2818G>A	c.(2818-2820)GAC>AAC	p.D940N	TEP1_uc010ahk.2_Missense_Mutation_p.D290N|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.D832N	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	940					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CAGCGGAGGTCGATTCCGTGA	0.652													15	32					0	0	1	0	0	
RNASE4	6038	broad.mit.edu	37	14	21167907	21167907	+	Missense_Mutation	SNP	C	T	T	rs143629764	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:21167907C>T	uc001vxy.3	+	2	940	c.377C>T	c.(376-378)GCG>GTG	p.A126V	RNASE4_uc001vxx.3_RNA|RNASE4_uc001vya.2_Missense_Mutation_p.A126V	NM_002937	NP_002928	P34096	RNAS4_HUMAN	ribonuclease, RNase A family, 4 precursor	126					mRNA cleavage	extracellular region	nucleic acid binding|pancreatic ribonuclease activity			central_nervous_system(1)	1	all_cancers(95;0.00304)		Epithelial(56;5.13e-07)|all cancers(55;4.73e-06)	GBM - Glioblastoma multiforme(265;0.0133)		CGGGCCATAGCGAGCACTAGA	0.532													48	132					0	0	1	0	0	
EDDM3A	10876	broad.mit.edu	37	14	21216071	21216071	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:21216071A>G	uc001vyb.2	+	2	399	c.332A>G	c.(331-333)AAC>AGC	p.N111S	EDDM3A_uc001vyc.2_Missense_Mutation_p.N111S	NM_006683	NP_006674	Q14507	EP3A_HUMAN	human epididymis-specific 3 alpha precursor	111					sperm displacement	extracellular space					0						GAGAAGTACAACAATAGGTAC	0.453													31	54					0	0	1	0	0	
METT11D1	64745	broad.mit.edu	37	14	21458737	21458737	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:21458737A>C	uc001vyn.2	+	3	541	c.344A>C	c.(343-345)AAA>ACA	p.K115T	METT11D1_uc010tlk.1_Missense_Mutation_p.K115T|METT11D1_uc001vym.2_Missense_Mutation_p.K115T|METT11D1_uc001vyo.2_Missense_Mutation_p.K115T|METT11D1_uc001vyp.2_5'UTR|METT11D1_uc001vyq.2_5'UTR	NM_022734	NP_073571	Q9H7H0	MET17_HUMAN	methyltransferase 11 domain containing 1 isoform	115					translation	mitochondrion|ribosome	copper ion binding|methyltransferase activity				0	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0191)		CATCTTGAGAAAAAATTCCTG	0.403											OREG0022561	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	35					0	0	1	0	0	
RNASE7	84659	broad.mit.edu	37	14	21511513	21511513	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:21511513A>T	uc001vzk.3	+	2	619	c.362A>T	c.(361-363)TAC>TTC	p.Y121F	NDRG2_uc010tll.1_Intron|RNASE7_uc001vzl.2_RNA	NM_032572	NP_115961	Q9H1E1	RNAS7_HUMAN	ribonuclease, RNase A family, 7 precursor	121					defense response to bacterium|innate immune response	extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(1)	1	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;3.42e-11)|Epithelial(56;5.57e-09)|all cancers(55;2.36e-08)	GBM - Glioblastoma multiforme(265;0.0191)		AACTGCAGGTACAAAGAGAAG	0.522													22	129					0	0	1	0	0	
FLJ10357	55701	broad.mit.edu	37	14	21541393	21541393	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:21541393G>A	uc001vzp.2	+	2	222	c.193G>A	c.(193-195)GAA>AAA	p.E65K	NDRG2_uc010tll.1_5'Flank|FLJ10357_uc001vzn.1_Missense_Mutation_p.E65K|FLJ10357_uc001vzo.1_Intron|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_5'UTR	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	65					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		GGTCCAGCAGGAAGCCTGTGT	0.572													8	12					0	0	1	0	0	
RPGRIP1	57096	broad.mit.edu	37	14	21756217	21756217	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:21756217A>G	uc001wag.2	+	1	82	c.82A>G	c.(82-84)AAA>GAA	p.K28E		NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	28					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		ACCAGCCTCAAAAGGTAACTT	0.458													36	83					0	0	1	0	0	
RPGRIP1	57096	broad.mit.edu	37	14	21792917	21792917	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:21792917G>A	uc001wag.2	+	14	1903	c.1903G>A	c.(1903-1905)GCC>ACC	p.A635T	RPGRIP1_uc001wah.2_Missense_Mutation_p.A277T|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001waj.1_Missense_Mutation_p.A100T|RPGRIP1_uc001wak.2_Missense_Mutation_p.A110T|RPGRIP1_uc010aim.2_Missense_Mutation_p.A18T|RPGRIP1_uc001wal.2_Intron|RPGRIP1_uc001wam.2_5'UTR	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	635			A -> G (in a patient with normal tension glaucoma and a patient with primary open angle glaucoma; affects the interaction with NPHP4).		response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		CATCCACCAGGCCTTCCTGAC	0.483													46	100					0	0	1	0	0	
CHD8	57680	broad.mit.edu	37	14	21882509	21882509	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:21882509A>C	uc001was.1	-	9	1350	c.1256T>G	c.(1255-1257)TTA>TGA	p.L419*	CHD8_uc001war.1_Nonsense_Mutation_p.L315*	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	698	Chromo 1.				ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		GAAGCGCTTTAATTTTTGATG	0.403													3	2					0	0	1	0	0	
SALL2	6297	broad.mit.edu	37	14	21992741	21992741	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:21992741T>G	uc001wbe.2	-	2	1403	c.1121A>C	c.(1120-1122)AAA>ACA	p.K374T	SALL2_uc010tly.1_Missense_Mutation_p.K372T|SALL2_uc010tlz.1_Missense_Mutation_p.K237T|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.K239T|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	374	C2H2-type 1.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		GAAGCGGCATTTGTGCCTTCC	0.562													27	46					0	0	1	0	0	
OR10G3	26533	broad.mit.edu	37	14	22038511	22038511	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:22038511T>C	uc010tmb.1	-	1	365	c.365A>G	c.(364-366)GAC>GGC	p.D122G		NM_001005465	NP_001005465	Q8NGC4	O10G3_HUMAN	olfactory receptor, family 10, subfamily G,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;0.000987)			GBM - Glioblastoma multiforme(265;0.0139)		CAGGTACCTGTCATAGGCCAT	0.547													33	52					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	14	22090578	22090578	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:22090578T>C	uc001wbi.2	+	2	230	c.217T>C	c.(217-219)TTT>CTT	p.F73L						SubName: Full=Putative uncharacterized protein ENSP00000374929;																		AGCACCCACATTTCTTTCTTA	0.478													73	142					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	14	22205231	22205231	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:22205231G>A	uc010aio.1	+	2		c.130G>A			uc001wbp.2_Missense_Mutation_p.D99N|uc010aip.1_Intron					Homo sapiens mRNA for T cell receptor alpha variable 4, partial cds, clone: SEB 72.																		TTCCCTGAGCGACACTGCTGT	0.552													15	22					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	14	22337448	22337448	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:22337448G>A	uc010tmf.1	+	2	321	c.242G>A	c.(241-243)CGA>CAA	p.R81Q	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Missense_Mutation_p.R80Q|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		AAAGACCAACGAATTGCTGTT	0.438													62	122					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	14	23020791	23020791	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23020791A>G	uc001wcx.3	+	7		c.1102A>G			uc001wdv.3_3'UTR|uc001wec.2_3'UTR|uc001wee.3_3'UTR|uc001wei.2_3'UTR|uc001wej.2_3'UTR|uc001wek.2_3'UTR|uc001wel.2_3'UTR|uc001wem.3_3'UTR|uc001wep.2_3'UTR|uc001weq.2_3'UTR|uc001wer.2_RNA|uc001weu.2_3'UTR|uc001wev.2_3'UTR|uc001wew.2_3'UTR|uc001wfe.2_3'UTR|uc001wfk.2_3'UTR|uc010ajy.1_3'UTR|uc001wfn.2_3'UTR|uc001wfp.2_3'UTR|uc001wfx.2_3'UTR|uc001wgd.2_3'UTR|uc001wge.3_3'UTR|uc010tmx.1_3'UTR|uc001wgh.2_3'UTR|uc001wgk.2_3'UTR					Homo sapiens mRNA for T cell receptor alpha variable 13, partial cds, clone: SEB 7.																		TCACTGCCTGACATTCACGGC	0.552													42	111					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	14	23021009	23021009	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23021009T>G	uc001wcx.3	+	7		c.1320T>G			uc001wdv.3_3'UTR|uc001wec.2_3'UTR|uc001wee.3_3'UTR|uc001wei.2_3'UTR|uc001wej.2_3'UTR|uc001wek.2_3'UTR|uc001wel.2_3'UTR|uc001wem.3_3'UTR|uc001wep.2_3'UTR|uc001weq.2_3'UTR|uc001wer.2_RNA|uc001weu.2_3'UTR|uc001wev.2_3'UTR|uc001wew.2_3'UTR|uc001wfe.2_3'UTR|uc001wfk.2_3'UTR|uc010ajy.1_3'UTR|uc001wfn.2_3'UTR|uc001wfp.2_3'UTR|uc001wfx.2_3'UTR|uc001wgd.2_3'UTR|uc001wge.3_3'UTR|uc010tmx.1_3'UTR|uc001wgh.2_3'UTR|uc001wgk.2_3'UTR					Homo sapiens mRNA for T cell receptor alpha variable 13, partial cds, clone: SEB 7.																		GGGGAAATTATCTCATTATCG	0.433													21	26					0	0	1	0	0	
MMP14	4323	broad.mit.edu	37	14	23314568	23314568	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23314568C>T	uc001whc.2	+	9	1644	c.1410C>T	c.(1408-1410)AGC>AGT	p.S470S		NM_004995	NP_004986	P50281	MMP14_HUMAN	matrix metalloproteinase 14 preproprotein	470	Hemopexin-like 4.|Extracellular (Potential).					extracellular matrix|integral to plasma membrane|melanosome	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0	all_cancers(95;9.47e-05)			GBM - Glioblastoma multiforme(265;0.00551)		TCATGGGCAGCGATGAAGGTG	0.562													11	22					0	0	1	0	0	
PSMB11	122706	broad.mit.edu	37	14	23512164	23512164	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23512164C>A	uc010ake.1	+	1	789	c.730C>A	c.(730-732)CTG>ATG	p.L244M		NM_001099780	NP_001093250	A5LHX3	PSB11_HUMAN	proteasome beta 11 subunit precursor	244					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00643)		TGCCTGTGTGCTGTACGTGGA	0.602													15	32					7.93312e-07	8.28085e-07	1	1	0	
ACIN1	22985	broad.mit.edu	37	14	23551042	23551042	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23551042T>G	uc001wit.3	-	5	942	c.614A>C	c.(613-615)AAA>ACA	p.K205T	ACIN1_uc001wis.3_5'Flank|ACIN1_uc010akg.2_Missense_Mutation_p.K205T|ACIN1_uc010tnj.1_Missense_Mutation_p.K165T	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	205	Glu-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		TGAGGAGCTTTTTCCTATTGA	0.368													26	72					0	0	1	0	0	
HOMEZ	57594	broad.mit.edu	37	14	23745818	23745818	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23745818T>C	uc001wja.2	-	2	767	c.619A>G	c.(619-621)ACA>GCA	p.T207A	HOMEZ_uc001wjb.2_Missense_Mutation_p.T209A	NM_020834	NP_065885	Q8IX15	HOMEZ_HUMAN	homeodomain leucine zipper protein	207						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(95;5.54e-06)			GBM - Glioblastoma multiforme(265;0.00643)		CTGCCAGGTGTCATCAGGGAC	0.537													47	101					0	0	1	0	0	
MYH6	4624	broad.mit.edu	37	14	23863388	23863388	+	Silent	SNP	G	A	A	rs148596692		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23863388G>A	uc001wjv.2	-	21	2641	c.2574C>T	c.(2572-2574)TTC>TTT	p.F858F		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	858	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGATGCGCCCGAACTCTTCCT	0.572													54	85					0	0	1	0	0	
MYH6	4624	broad.mit.edu	37	14	23869930	23869930	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23869930G>A	uc001wjv.2	-	13	1465	c.1398C>T	c.(1396-1398)TTC>TTT	p.F466F	MYH6_uc010akp.1_Silent_p.F466F	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	466	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CGAAGATCTCGAAGCCAGCGA	0.438													27	55					0	0	1	0	0	
MYH6	4624	broad.mit.edu	37	14	23876239	23876239	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23876239T>G	uc001wjv.2	-	3	261	c.194A>C	c.(193-195)AAT>ACT	p.N65T	MYH6_uc010akp.1_Missense_Mutation_p.N65T	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	65	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CACCTTCCCATTCTCGGTTTC	0.572													120	282					0	0	1	0	0	
MYH7	4625	broad.mit.edu	37	14	23885495	23885495	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23885495C>A	uc001wjx.2	-	34	4777	c.4671G>T	c.(4669-4671)AAG>AAT	p.K1557N		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1557	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CCCGGAGGATCTTGCCCTCCT	0.637													52	98					4.88482e-21	5.78106e-21	1	1	0	
MYH7	4625	broad.mit.edu	37	14	23893979	23893979	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23893979G>A	uc001wjx.2	-	22	2784	c.2678C>T	c.(2677-2679)GCG>GTG	p.A893V		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	893	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GAGCCTCACCGCCTGCACTTG	0.597													45	26					0	0	1	0	0	
NGDN	25983	broad.mit.edu	37	14	23946730	23946730	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:23946730A>C	uc001wjy.2	+	10	916	c.889A>C	c.(889-891)AAG>CAG	p.K297Q	NGDN_uc001wjz.2_Missense_Mutation_p.K297Q|NGDN_uc001wka.2_RNA	NM_001042635	NP_001036100	Q8NEJ9	NGDN_HUMAN	neuroguidin isoform 1	297					regulation of translation	axon|cytoplasm|dendrite|filopodium|nucleus					0	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		TCCTATTAAGAAGCGGAAGAA	0.473													13	35					0	0	1	0	0	
AP1G2	8906	broad.mit.edu	37	14	24033302	24033302	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:24033302C>T	uc001wkl.2	-	11	1381	c.1044G>A	c.(1042-1044)CGG>CGA	p.R348R	AP1G2_uc001wkj.2_5'UTR|AP1G2_uc001wkk.3_Silent_p.R276R|AP1G2_uc001wkn.2_5'UTR|uc001wko.1_Intron|AP1G2_uc001wkp.1_RNA|AP1G2_uc010tnp.1_Silent_p.R348R	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	348					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		CCACAGTGGGCCGATGCCGCT	0.587													15	26					0	0	1	0	0	
AP1G2	8906	broad.mit.edu	37	14	24034396	24034396	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:24034396G>A	uc001wkl.2	-	8	1091	c.754C>T	c.(754-756)CGT>TGT	p.R252C	AP1G2_uc001wkj.2_5'UTR|AP1G2_uc001wkk.3_Missense_Mutation_p.R180C|AP1G2_uc001wkn.2_5'UTR|uc001wko.1_Intron|AP1G2_uc001wkp.1_5'Flank|AP1G2_uc010tnp.1_Missense_Mutation_p.R252C|AP1G2_uc010aks.2_3'UTR|AP1G2_uc010akt.2_3'UTR|AP1G2_uc010tnq.1_RNA	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	252					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		CGAAGCAGACGAAGTATCTGG	0.557													14	26					0	0	1	0	0	
LRRC16B	90668	broad.mit.edu	37	14	24537875	24537875	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:24537875C>A	uc001wlj.2	+	37	3922	c.3765C>A	c.(3763-3765)CTC>CTA	p.L1255L	LRRC16B_uc001wlk.2_Silent_p.L308L|CPNE6_uc010tnv.1_5'Flank|CPNE6_uc001wlm.2_5'Flank|CPNE6_uc001wll.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1255										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		AGGGGACCCTCTTCCCAGAGA	0.597													27	37					4.72057e-08	4.99044e-08	1	1	0	
GZMB	3002	broad.mit.edu	37	14	25100413	25100413	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:25100413G>A	uc001wps.2	-	5	674	c.608C>T	c.(607-609)TCT>TTT	p.S203F	GZMB_uc010ama.2_Missense_Mutation_p.S191F|GZMB_uc010amb.2_RNA	NM_004131	NP_004122	P10144	GRAB_HUMAN	granzyme B precursor	203	Peptidase S1.	Charge relay system.			activation of pro-apoptotic gene products|cleavage of lamin|cytolysis|induction of apoptosis by intracellular signals	cytosol|immunological synapse|nucleus	protein binding|serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.028)		AGGGCCTCCAGAGTCCCCCTG	0.547													14	55					0	0	1	0	0	
NOVA1	4857	broad.mit.edu	37	14	26949193	26949194	+	Missense_Mutation	DNP	CG	TA	TA			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:26949193_26949194CG>TA	uc001wpy.2	-	3	754_755	c.436_437CG>TA	c.(436-438)CGC>TAC	p.R146Y	NOVA1_uc001wpz.2_Missense_Mutation_p.R146Y|NOVA1_uc001wqa.2_Missense_Mutation_p.R24Y|NOVA1_uc001wqb.2_Missense_Mutation_p.R146Y	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	149					locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		TTGTTTGATGCGATCTGGATTA	0.386													61	104					0	0	1	0	0	
PRKD1	5587	broad.mit.edu	37	14	30068276	30068276	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:30068276T>C	uc001wqh.2	-	15	2304	c.2123A>G	c.(2122-2124)AAA>AGA	p.K708R		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	708	Protein kinase.				cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		ATTTTCTGGTTTGAGGTCACA	0.398													45	86					0	0	1	0	0	
PRKD1	5587	broad.mit.edu	37	14	30107713	30107713	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:30107713C>T	uc001wqh.2	-	6	1148	c.967G>A	c.(967-969)GAA>AAA	p.E323K		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	323					cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		ATGGTCACTTCGCCAAGGCAG	0.393													6	91					0	0	1	0	0	
G2E3	55632	broad.mit.edu	37	14	31085717	31085717	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:31085717A>C	uc001wqk.2	+	15	2252	c.2098A>C	c.(2098-2100)AGT>CGT	p.S700R	G2E3_uc010tpf.1_Missense_Mutation_p.S654R|G2E3_uc001wql.1_Missense_Mutation_p.S212R	NM_017769	NP_060239	Q7L622	G2E3_HUMAN	G2/M-phase specific E3 ubiquitin ligase	700					apoptosis|multicellular organismal development|protein modification process	Golgi apparatus|nucleolus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						AAAGGAAGAAAGTTCTCATTA	0.303													26	39					0	0	1	0	0	
HECTD1	25831	broad.mit.edu	37	14	31581680	31581680	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:31581680G>A	uc001wrc.1	-	35	6709	c.6220C>T	c.(6220-6222)CTA>TTA	p.L2074L	HECTD1_uc001wra.1_Silent_p.L200L|HECTD1_uc001wrb.1_Silent_p.L200L	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	2074	K-box.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		AATGGTATTAGAAAAGGACAT	0.378													12	31					0	0	1	0	0	
HECTD1	25831	broad.mit.edu	37	14	31583209	31583209	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:31583209C>A	uc001wrc.1	-	32	6219	c.5730G>T	c.(5728-5730)AAG>AAT	p.K1910N	HECTD1_uc001wra.1_Missense_Mutation_p.K36N|HECTD1_uc001wrb.1_Missense_Mutation_p.K36N|HECTD1_uc001wrd.1_Missense_Mutation_p.K1378N	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1910					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		TCAAGTCATTCTTTGGTAATT	0.408													13	39					5.50884e-06	5.70595e-06	1	1	0	
HECTD1	25831	broad.mit.edu	37	14	31590701	31590701	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:31590701C>T	uc001wrc.1	-	28	5615	c.5126G>A	c.(5125-5127)CGC>CAC	p.R1709H	HECTD1_uc001wra.1_5'UTR|HECTD1_uc001wrb.1_5'UTR|HECTD1_uc001wrd.1_Missense_Mutation_p.R1177H	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1709					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		CAGGGATGGGCGTCTCAGAAT	0.488													17	48					0	0	1	0	0	
HECTD1	25831	broad.mit.edu	37	14	31641112	31641112	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:31641112T>C	uc001wrc.1	-	8	1776	c.1287A>G	c.(1285-1287)TCA>TCG	p.S429S		NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	429	ANK 2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		AATGTAATGATGATGACCTTT	0.294													11	28					0	0	1	0	0	
HEATR5A	25938	broad.mit.edu	37	14	31816982	31816982	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:31816982G>A	uc001wrf.3	-	13	2038	c.1961C>T	c.(1960-1962)GCG>GTG	p.A654V	HEATR5A_uc010ami.2_Missense_Mutation_p.A552V|HEATR5A_uc001wrg.1_Missense_Mutation_p.A536V|HEATR5A_uc010tpk.1_Missense_Mutation_p.A947V	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	941							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		GCTGTCCTGCGCCAAAGTATA	0.408													12	37					0	0	1	0	0	
HEATR5A	25938	broad.mit.edu	37	14	31827881	31827881	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:31827881G>T	uc001wrf.3	-	10	1571	c.1494C>A	c.(1492-1494)CTC>CTA	p.L498L	HEATR5A_uc010ami.2_Silent_p.L396L|HEATR5A_uc001wrg.1_Silent_p.L380L|HEATR5A_uc010tpk.1_Silent_p.L791L	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	785							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		CAACCCCAAAGAGCTTGGATG	0.408													89	227					5.00475e-40	6.2035e-40	1	1	0	
AKAP6	9472	broad.mit.edu	37	14	33016131	33016131	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:33016131T>G	uc001wrq.2	+	4	2442	c.2272T>G	c.(2272-2274)TCA>GCA	p.S758A	AKAP6_uc010aml.2_Missense_Mutation_p.S755A	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	758					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TGCCACTAAATCAGCTTTAAT	0.403													34	84					0	0	1	0	0	
AKAP6	9472	broad.mit.edu	37	14	33293854	33293854	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:33293854G>T	uc001wrq.2	+	13	7005	c.6835G>T	c.(6835-6837)GAC>TAC	p.D2279Y		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2279					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TAAAGTTCAAGACCTCTCCTT	0.428													41	64					4.32679e-17	4.9986e-17	1	1	0	
NPAS3	64067	broad.mit.edu	37	14	33684409	33684409	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:33684409G>T	uc001wru.2	+	3	226	c.162G>T	c.(160-162)GAG>GAT	p.E54D	NPAS3_uc001wrs.2_Missense_Mutation_p.E24D|NPAS3_uc001wrt.2_Missense_Mutation_p.E24D|NPAS3_uc001wrv.2_Missense_Mutation_p.E24D|NPAS3_uc001wrw.2_5'UTR	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	54	Basic motif.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		TGAGAAAGGAGAAATCCCGAG	0.433													19	57					2.35188e-11	2.57851e-11	1	1	0	
BAZ1A	11177	broad.mit.edu	37	14	35222877	35222877	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:35222877G>A	uc001wsk.2	-	27	5076	c.4508C>T	c.(4507-4509)TCG>TTG	p.S1503L	BAZ1A_uc001wsl.2_Missense_Mutation_p.S1471L	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	1503	Bromo.				chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		AAAGCAGTTCGAAAACATTAA	0.333													23	28					0	0	1	0	0	
SRP54	6729	broad.mit.edu	37	14	35482598	35482598	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:35482598C>T	uc001wso.2	+	9	1034	c.683C>T	c.(682-684)GCT>GTT	p.A228V	SRP54_uc010tpp.1_Missense_Mutation_p.A179V|SRP54_uc010tpq.1_Missense_Mutation_p.A164V	NM_003136	NP_003127	P61011	SRP54_HUMAN	signal recognition particle 54kDa isoform 1	228	G-domain.				GTP catabolic process|response to drug|SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|SRP-dependent cotranslational protein targeting to membrane, translocation	cytosol|nuclear speck|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|drug binding|endoplasmic reticulum signal peptide binding|GDP binding|GTP binding|nucleoside-triphosphatase activity|ribonucleoprotein binding			ovary(1)	1	Breast(36;0.0545)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;2.48e-05)|Lung(238;3.13e-05)|Epithelial(34;0.0314)|all cancers(34;0.0797)|BRCA - Breast invasive adenocarcinoma(188;0.243)	GBM - Glioblastoma multiforme(112;0.0396)		ATTGGGCAGGCTTGTGAAGCC	0.383													21	60					0	0	1	0	0	
RALGAPA1	253959	broad.mit.edu	37	14	36074888	36074888	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:36074888A>G	uc001wti.2	-	35	5830	c.5439T>C	c.(5437-5439)TTT>TTC	p.F1813F	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Silent_p.F1813F|RALGAPA1_uc010tpv.1_Silent_p.F1826F|RALGAPA1_uc010tpw.1_Silent_p.F1860F	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1813	Minimal domain that binds to TCF3/E12 (By similarity).|Rap-GAP.				activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						CAGCAACATAAAATACTGCAA	0.353													37	68					0	0	1	0	0	
RALGAPA1	253959	broad.mit.edu	37	14	36096544	36096544	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:36096544C>T	uc001wti.2	-	33	5482	c.5091G>A	c.(5089-5091)CAG>CAA	p.Q1697Q	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Silent_p.Q1697Q|RALGAPA1_uc010tpv.1_Silent_p.Q1710Q|RALGAPA1_uc010tpw.1_Silent_p.Q1744Q	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1697	Minimal domain that binds to TCF3/E12 (By similarity).				activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TTCCAGTTCTCTGTAAGCATT	0.368													34	80					0	0	1	0	0	
RALGAPA1	253959	broad.mit.edu	37	14	36123671	36123671	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:36123671T>C	uc001wti.2	-	29	4382	c.3991A>G	c.(3991-3993)ACA>GCA	p.T1331A	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Missense_Mutation_p.T1331A|RALGAPA1_uc010tpv.1_Missense_Mutation_p.T1344A|RALGAPA1_uc010tpw.1_Missense_Mutation_p.T1378A	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1331	Minimal domain that binds to TCF3/E12 (By similarity).				activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TGGGCTACTGTTTTATTAGTA	0.294													21	23					0	0	1	0	0	
PAX9	5083	broad.mit.edu	37	14	37145483	37145483	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:37145483G>A	uc001wty.3	+	5	1569	c.852G>A	c.(850-852)TCG>TCA	p.S284S	PAX9_uc010amq.2_RNA	NM_006194	NP_006185	P55771	PAX9_HUMAN	paired box 9	284					multicellular organismal development|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.218)		Lung(8;1.12e-09)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.00357)|all cancers(34;0.00998)|LUSC - Lung squamous cell carcinoma(13;0.0189)	GBM - Glioblastoma multiforme(112;0.0181)		CCCAAGTGTCGCCTTACATGA	0.537													46	127					0	0	1	0	0	
SLC25A21	89874	broad.mit.edu	37	14	37283144	37283144	+	Missense_Mutation	SNP	C	T	T	rs147035536	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:37283144C>T	uc001wtz.1	-	3	492	c.182G>A	c.(181-183)CGA>CAA	p.R61Q		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	61	Solcar 1.				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		GAAAATCATTCGAAAGCTGTC	0.313													24	53					0	0	1	0	0	
MIPOL1	145282	broad.mit.edu	37	14	37736309	37736309	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:37736309G>A	uc001wuc.2	+	5	689	c.186G>A	c.(184-186)ACG>ACA	p.T62T	MIPOL1_uc010amr.2_RNA|MIPOL1_uc001wub.3_Silent_p.T31T|MIPOL1_uc001wud.2_Silent_p.T62T|MIPOL1_uc010ams.2_Silent_p.T62T|MIPOL1_uc001wue.2_Silent_p.T31T|MIPOL1_uc010amt.2_Intron	NM_138731	NP_620059	Q8TD10	MIPO1_HUMAN	mirror-image polydactyly 1	62										ovary(1)|central_nervous_system(1)	2	Breast(36;0.119)|Esophageal squamous(585;0.164)|Hepatocellular(127;0.213)		Lung(238;6.03e-07)|LUAD - Lung adenocarcinoma(48;2.48e-05)|Epithelial(34;0.047)|all cancers(34;0.0953)|LUSC - Lung squamous cell carcinoma(13;0.0975)|BRCA - Breast invasive adenocarcinoma(188;0.196)	GBM - Glioblastoma multiforme(112;0.0358)		AGAGATCAACGAATTTTCAGA	0.368													27	73					0	0	1	0	0	
MIPOL1	145282	broad.mit.edu	37	14	37737950	37737950	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:37737950A>C	uc001wuc.2	+	6	842	c.339A>C	c.(337-339)ATA>ATC	p.I113I	MIPOL1_uc010amr.2_RNA|MIPOL1_uc001wub.3_Silent_p.I82I|MIPOL1_uc001wud.2_Silent_p.I113I|MIPOL1_uc010ams.2_Silent_p.I113I|MIPOL1_uc001wue.2_Silent_p.I82I|MIPOL1_uc010amt.2_Intron	NM_138731	NP_620059	Q8TD10	MIPO1_HUMAN	mirror-image polydactyly 1	113	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(36;0.119)|Esophageal squamous(585;0.164)|Hepatocellular(127;0.213)		Lung(238;6.03e-07)|LUAD - Lung adenocarcinoma(48;2.48e-05)|Epithelial(34;0.047)|all cancers(34;0.0953)|LUSC - Lung squamous cell carcinoma(13;0.0975)|BRCA - Breast invasive adenocarcinoma(188;0.196)	GBM - Glioblastoma multiforme(112;0.0358)		AGAAGACAATAGCATTTCTTC	0.308													75	109					0	0	1	0	0	
CLEC14A	161198	broad.mit.edu	37	14	38724535	38724535	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:38724535G>A	uc001wum.1	-	1	1040	c.693C>T	c.(691-693)ATC>ATT	p.I231I		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	231	Extracellular (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		AGCGAGCGCCGATTTCGTCCG	0.632													83	172					0	0	1	0	0	
SEC23A	10484	broad.mit.edu	37	14	39556144	39556144	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:39556144A>G	uc001wup.1	-	6	895	c.672T>C	c.(670-672)CCT>CCC	p.P224P	SEC23A_uc010tqa.1_Silent_p.P86P|SEC23A_uc010tqb.1_Silent_p.P195P|SEC23A_uc010tqc.1_Silent_p.P86P	NM_006364	NP_006355	Q15436	SC23A_HUMAN	SEC23-related protein A	224					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|Golgi membrane|smooth endoplasmic reticulum membrane	protein binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5	Hepatocellular(127;0.213)		Lung(238;0.00047)|LUAD - Lung adenocarcinoma(48;0.000565)	GBM - Glioblastoma multiforme(112;0.0151)		TGTTGGAAGGAGGTGGCTGCT	0.388													24	50					0	0	1	0	0	
MIA2	117153	broad.mit.edu	37	14	39716573	39716573	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:39716573G>A	uc001wux.2	+	4	989	c.795G>A	c.(793-795)GAG>GAA	p.E265E	MIA2_uc010amy.1_Silent_p.E196E	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	265						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		ATGACCTAGAGGAATTAAATA	0.388													33	69					0	0	1	0	0	
MIA2	117153	broad.mit.edu	37	14	39716613	39716613	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:39716613G>T	uc001wux.2	+	4	1029	c.835G>T	c.(835-837)GAA>TAA	p.E279*	MIA2_uc010amy.1_Nonsense_Mutation_p.E210*	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	279						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		ACATCAGCAAGAATCTGAATC	0.413													41	75					2.24893e-16	2.58354e-16	1	1	0	
FBXO33	254170	broad.mit.edu	37	14	39870682	39870682	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:39870682C>T	uc001wvk.2	-	3	1432	c.1094G>A	c.(1093-1095)CGA>CAA	p.R365Q		NM_203301	NP_976046	Q7Z6M2	FBX33_HUMAN	F-box protein 33	365											0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00121)|Epithelial(34;0.169)	GBM - Glioblastoma multiforme(112;0.0425)		GGTGCTCTTTCGTGACAGGGC	0.418													36	71					0	0	1	0	0	
FBXO33	254170	broad.mit.edu	37	14	39870866	39870866	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:39870866G>A	uc001wvk.2	-	3	1248	c.910C>T	c.(910-912)CGA>TGA	p.R304*		NM_203301	NP_976046	Q7Z6M2	FBX33_HUMAN	F-box protein 33	304											0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00121)|Epithelial(34;0.169)	GBM - Glioblastoma multiforme(112;0.0425)		TTCACAAATCGCTCCAGTTCA	0.433													45	90					0	0	1	0	0	
FAM179B	23116	broad.mit.edu	37	14	45431763	45431763	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:45431763A>C	uc001wvv.2	+	1	348	c.139A>C	c.(139-141)AAC>CAC	p.N47H	FAM179B_uc001wvw.2_Missense_Mutation_p.N47H|FAM179B_uc010anc.2_RNA|KLHL28_uc001wvq.2_5'Flank|KLHL28_uc001wvr.2_5'Flank|FAM179B_uc010anb.1_Missense_Mutation_p.N47H|FAM179B_uc001wvu.2_Missense_Mutation_p.N47H	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	47							binding			skin(2)|upper_aerodigestive_tract(1)	3						AGGAGAGAAAAACTACTACTT	0.592													18	31					0	0	1	0	0	
FAM179B	23116	broad.mit.edu	37	14	45432816	45432816	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:45432816T>C	uc001wvv.2	+	1	1401	c.1192T>C	c.(1192-1194)TTG>CTG	p.L398L	FAM179B_uc001wvw.2_Silent_p.L398L|FAM179B_uc010anc.2_RNA|KLHL28_uc001wvq.2_5'Flank|KLHL28_uc001wvr.2_5'Flank|FAM179B_uc010anb.1_Silent_p.L398L|FAM179B_uc001wvu.2_Silent_p.L398L	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	398	HEAT 2.						binding			skin(2)|upper_aerodigestive_tract(1)	3						CTTCATTAGTTTGCTATATAA	0.433													38	87					0	0	1	0	0	
FAM179B	23116	broad.mit.edu	37	14	45433587	45433587	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:45433587G>T	uc001wvv.2	+	1	2172	c.1963G>T	c.(1963-1965)GGA>TGA	p.G655*	FAM179B_uc001wvw.2_Nonsense_Mutation_p.G655*|FAM179B_uc010anc.2_RNA|KLHL28_uc001wvr.2_5'Flank|FAM179B_uc010anb.1_Nonsense_Mutation_p.G655*|FAM179B_uc001wvu.2_Nonsense_Mutation_p.G655*	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	655							binding			skin(2)|upper_aerodigestive_tract(1)	3						TGCAGGAAAAGGAAAAAATAA	0.433													23	42					6.44725e-10	6.96688e-10	1	1	0	
FKBP3	2287	broad.mit.edu	37	14	45587237	45587237	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:45587237T>C	uc010tqf.1	-	6	687	c.614A>G	c.(613-615)GAT>GGT	p.D205G		NM_002013	NP_002004	Q00688	FKBP3_HUMAN	FK506 binding protein 3, 25kDa	205	PPIase FKBP-type.				protein folding	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|receptor activity				0						ATACTTGGCATCAGGCTGTCC	0.408													46	94					0	0	1	0	0	
FANCM	57697	broad.mit.edu	37	14	45606351	45606351	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:45606351T>C	uc001wwd.3	+	2	687	c.588T>C	c.(586-588)AAT>AAC	p.N196N	FANCM_uc001wwc.2_Silent_p.N196N|FANCM_uc010anf.2_Silent_p.N196N|FKBP3_uc010tqf.1_5'Flank	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	196	Helicase ATP-binding.				DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TCATGGTAAATGACCTTTCTA	0.403								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				20	49					0	0	1	0	0	
FANCM	57697	broad.mit.edu	37	14	45618133	45618133	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:45618133A>C	uc001wwd.3	+	4	952	c.853A>C	c.(853-855)AAA>CAA	p.K285Q	FANCM_uc001wwc.2_Missense_Mutation_p.K285Q|FANCM_uc010anf.2_Missense_Mutation_p.K259Q	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	285					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TCATGAAAGAAAAGTTGAAAA	0.363								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				21	33					0	0	1	0	0	
FANCM	57697	broad.mit.edu	37	14	45645419	45645419	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:45645419T>C	uc001wwd.3	+	14	3561	c.3462T>C	c.(3460-3462)AGT>AGC	p.S1154S	FANCM_uc010anf.2_Silent_p.S1128S|FANCM_uc001wwe.3_Silent_p.S690S|FANCM_uc010ang.2_Silent_p.S368S	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1154					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						CCTTGAACAGTAAAAGCGAAT	0.383								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				62	114					0	0	1	0	0	
RPL10L	140801	broad.mit.edu	37	14	47120402	47120402	+	Missense_Mutation	SNP	C	T	T	rs61745038	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:47120402C>T	uc001wwg.2	-	1	627	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	180					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						TCTTCAAATTCGTCAGCATTA	0.517													41	82					0	0	1	0	0	
MDGA2	161357	broad.mit.edu	37	14	47342659	47342659	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:47342659T>C	uc001wwj.3	-	14	2718	c.2522A>G	c.(2521-2523)TAT>TGT	p.Y841C	MDGA2_uc001wwh.3_Missense_Mutation_p.Y43C|MDGA2_uc001wwi.3_Missense_Mutation_p.Y612C|MDGA2_uc010ani.2_Missense_Mutation_p.Y401C	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	841	MAM.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						ATACATGTGATAAAAGAAGCT	0.368													38	73					0	0	1	0	0	
MDGA2	161357	broad.mit.edu	37	14	47343401	47343401	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:47343401C>A	uc001wwj.3	-	13	2429	c.2233G>T	c.(2233-2235)GAA>TAA	p.E745*	MDGA2_uc001wwh.3_5'UTR|MDGA2_uc001wwi.3_Nonsense_Mutation_p.E516*|MDGA2_uc010ani.2_Nonsense_Mutation_p.E305*	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	745					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						CAATGAAATTCTCCTGTTGGt	0.239													20	32					2.4624e-09	2.64481e-09	1	1	0	
MDGA2	161357	broad.mit.edu	37	14	47600940	47600940	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:47600940G>A	uc001wwj.3	-	5	891	c.695C>T	c.(694-696)TCG>TTG	p.S232L	MDGA2_uc001wwi.3_Missense_Mutation_p.S3L|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	232	Ig-like 2.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						CAGTCTAAACGACACCATCTT	0.313													36	73					0	0	1	0	0	
C14orf104	55172	broad.mit.edu	37	14	50100024	50100024	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:50100024A>G	uc001wws.3	-	1	1925	c.1844T>C	c.(1843-1845)GTA>GCA	p.V615A	SDCCAG1_uc010anj.1_Intron|C14orf104_uc001wwt.3_Missense_Mutation_p.V615A	NM_018139	NP_060609	Q9NVR5	KTU_HUMAN	kintoun isoform 1	615					axonemal dynein complex assembly|ciliary cell motility|flagellar cell motility	cytoplasm					0	all_epithelial(31;0.0021)|Breast(41;0.0124)					ATCGTTGTTTACACCATAATA	0.358									Kartagener_syndrome				13	37					0	0	1	0	0	
ATL1	51062	broad.mit.edu	37	14	51099045	51099045	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:51099045G>T	uc001wyf.3	+	13	1906	c.1665G>T	c.(1663-1665)AAG>AAT	p.K555N	ATL1_uc001wyd.3_Missense_Mutation_p.K550N|ATL1_uc001wye.3_Missense_Mutation_p.K550N	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	555	Cytoplasmic.|Sufficient for membrane association.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						AATCAGAAAAGAAAAAAATGT	0.363													12	35					6.40141e-05	6.56571e-05	1	1	0	
NIN	51199	broad.mit.edu	37	14	51239123	51239123	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:51239123G>A	uc001wym.2	-	9	1068	c.877C>T	c.(877-879)CGG>TGG	p.R293W	NIN_uc001wyi.2_Missense_Mutation_p.R293W|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.R293W|NIN_uc010tqp.1_Missense_Mutation_p.R299W|NIN_uc001wyo.2_Missense_Mutation_p.R293W|NIN_uc001wyp.1_Missense_Mutation_p.R255W	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	293					centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					GAGAAGACCCGAAAGCCAATG	0.517			T	PDGFRB	MPD								21	53					0	0	1	0	0	
ABHD12B	145447	broad.mit.edu	37	14	51345491	51345491	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:51345491G>T	uc001wys.2	+	3	276	c.261G>T	c.(259-261)AAG>AAT	p.K87N	ABHD12B_uc001wyq.2_5'UTR|ABHD12B_uc001wyr.2_Intron|ABHD12B_uc010any.2_RNA	NM_181533	NP_853511	Q7Z5M8	AB12B_HUMAN	abhydrolase domain containing 12B isoform b	87							hydrolase activity			breast(1)	1	all_epithelial(31;0.00481)|Breast(41;0.148)					TGGATTTAAAGAAACCAGAGT	0.413													31	58					1.88708e-17	2.18811e-17	1	1	0	
TRIM9	114088	broad.mit.edu	37	14	51475949	51475949	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:51475949A>C	uc001wyx.3	-	5	1920	c.1155T>G	c.(1153-1155)ATT>ATG	p.I385M	TRIM9_uc001wyy.2_Missense_Mutation_p.I385M|TRIM9_uc001wyz.3_Missense_Mutation_p.I385M	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	385	COS.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					GGGCGTCAGAAATCTAATCAG	0.493													26	52					0	0	1	0	0	
FRMD6	122786	broad.mit.edu	37	14	52174833	52174833	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:52174833A>G	uc001wzd.2	+	7	881	c.596A>G	c.(595-597)CAC>CGC	p.H199R	FRMD6_uc001wzb.2_Missense_Mutation_p.H191R|FRMD6_uc001wzc.2_Missense_Mutation_p.H191R|FRMD6_uc001wze.2_Missense_Mutation_p.H122R	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	199	FERM.					cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					ATCCTGAAGCACATTCCAAAC	0.458													14	52					0	0	1	0	0	
PTGER2	5732	broad.mit.edu	37	14	52793970	52793970	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:52793970G>A	uc001wzr.2	+	2	1126	c.875G>A	c.(874-876)CGA>CAA	p.R292Q		NM_000956	NP_000947	P43116	PE2R2_HUMAN	prostaglandin E receptor 2 (subtype EP2), 53kDa	292	Extracellular (Potential).					integral to plasma membrane	prostaglandin E receptor activity			lung(1)|breast(1)	2	Breast(41;0.0639)|all_epithelial(31;0.0729)				Alprostadil(DB00770)|Iloprost(DB01088)	ACCTCTTCCCGAAAGGAAAAA	0.393													22	44					0	0	1	0	0	
FERMT2	10979	broad.mit.edu	37	14	53331516	53331516	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:53331516G>T	uc001xad.2	-	11	1384	c.1329C>A	c.(1327-1329)CTC>CTA	p.L443L	FERMT2_uc001xac.2_Silent_p.L443L|FERMT2_uc001xae.2_Silent_p.L443L|FERMT2_uc001xaf.2_Silent_p.L443L	NM_006832	NP_006823	Q96AC1	FERM2_HUMAN	fermitin family homolog 2 isoform 1	443	FERM.|PH.				actin cytoskeleton organization|cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytosol|focal adhesion|stress fiber	binding				0	Breast(41;0.0342)					CTGGAATCAGGAGTTTAATGT	0.308													48	146					4.25531e-23	5.09196e-23	1	1	0	
GMFB	2764	broad.mit.edu	37	14	54950455	54950455	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:54950455C>T	uc010tqz.1	-	2	133	c.34G>A	c.(34-36)GAA>AAA	p.E12K	GMFB_uc001xaw.1_RNA	NM_004124	NP_004115	P60983	GMFB_HUMAN	glia maturation factor, beta	12	ADF-H.				nervous system development|protein phosphorylation	intracellular	actin binding|enzyme activator activity|growth factor activity|protein kinase inhibitor activity|signal transducer activity				0						ACTAAATCTTCGGCAACATCA	0.338													20	39					0	0	1	0	0	
WDHD1	11169	broad.mit.edu	37	14	55455824	55455824	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:55455824T>G	uc001xbm.1	-	13	1526	c.1448A>C	c.(1447-1449)AAC>ACC	p.N483T	WDHD1_uc010aom.1_Intron|WDHD1_uc001xbn.1_Missense_Mutation_p.N360T	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	483						cytoplasm|nucleoplasm	DNA binding			skin(1)	1						ATTCAAAGTGTTTGATAAGTG	0.373													9	152					0	0	1	0	0	
KTN1	3895	broad.mit.edu	37	14	56078947	56078947	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:56078947A>C	uc001xcb.2	+	3	483	c.181A>C	c.(181-183)AAG>CAG	p.K61Q	KTN1_uc001xce.2_Missense_Mutation_p.K61Q|KTN1_uc001xcc.2_Missense_Mutation_p.K61Q|KTN1_uc001xcd.2_Missense_Mutation_p.K61Q|KTN1_uc010trb.1_Missense_Mutation_p.K61Q|KTN1_uc001xcf.1_Missense_Mutation_p.K61Q	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	61	Lumenal (Potential).				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						agaaaagaaaaagaataaaaa	0.279			T	RET	papillary thryoid								15	35					0	0	1	0	0	
KTN1	3895	broad.mit.edu	37	14	56099965	56099965	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:56099965C>T	uc001xcb.2	+	9	1536	c.1234C>T	c.(1234-1236)CGT>TGT	p.R412C	KTN1_uc001xce.2_Missense_Mutation_p.R412C|KTN1_uc001xcc.2_Missense_Mutation_p.R412C|KTN1_uc001xcd.2_Missense_Mutation_p.R412C|KTN1_uc010trb.1_Missense_Mutation_p.R412C|KTN1_uc001xcf.1_Missense_Mutation_p.R412C	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	412	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						TCAGCAAGTTCGTGAGCAGAT	0.328			T	RET	papillary thryoid								19	25					0	0	1	0	0	
KTN1	3895	broad.mit.edu	37	14	56117309	56117309	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:56117309C>T	uc001xcb.2	+	25	2821	c.2519C>T	c.(2518-2520)GCT>GTT	p.A840V	KTN1_uc001xce.2_Missense_Mutation_p.A840V|KTN1_uc001xcc.2_Missense_Mutation_p.A840V|KTN1_uc001xcd.2_Intron|KTN1_uc010trb.1_Missense_Mutation_p.A840V|KTN1_uc001xcf.1_Intron|KTN1_uc010aoq.2_Missense_Mutation_p.A135V	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	840	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						GAAATAAAGGCTCTAAAAGAA	0.348			T	RET	papillary thryoid								25	57					0	0	1	0	0	
KTN1	3895	broad.mit.edu	37	14	56137449	56137449	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:56137449T>G	uc001xcb.2	+	36	3572	c.3270T>G	c.(3268-3270)AGT>AGG	p.S1090R	KTN1_uc001xce.2_Missense_Mutation_p.S1061R|KTN1_uc001xcc.2_Missense_Mutation_p.S1090R|KTN1_uc001xcd.2_Missense_Mutation_p.S1067R|KTN1_uc010trb.1_Missense_Mutation_p.S1090R|KTN1_uc001xcf.1_Missense_Mutation_p.S1067R|KTN1_uc010aoq.2_Missense_Mutation_p.S356R|KTN1_uc010trc.1_Missense_Mutation_p.S95R|KTN1_uc001xcg.2_Missense_Mutation_p.S51R	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	1090	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						GTCCACAGAGTTATGGTGAAT	0.313			T	RET	papillary thryoid								25	39					0	0	1	0	0	
C14orf101	54916	broad.mit.edu	37	14	57083995	57083995	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:57083995A>C	uc001xcm.2	+	9	1158	c.1036A>C	c.(1036-1038)AAA>CAA	p.K346Q	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_Intron|C14orf101_uc010trf.1_5'UTR|C14orf101_uc001xco.2_5'UTR	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	346						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		AGATATTTCAAAACCACTTTT	0.323													25	56					0	0	1	0	0	
C14orf101	54916	broad.mit.edu	37	14	57092214	57092214	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:57092214T>C	uc001xcm.2	+	12	1635	c.1513T>C	c.(1513-1515)TTT>CTT	p.F505L	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xcl.1_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_Missense_Mutation_p.F38L|C14orf101_uc001xco.2_Missense_Mutation_p.F38L	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	505						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		AATGGTCACATTTAATCTTTA	0.348													28	56					0	0	1	0	0	
EXOC5	10640	broad.mit.edu	37	14	57675371	57675371	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:57675371G>A	uc001xct.2	-	18	2334	c.2083C>T	c.(2083-2085)CGT>TGT	p.R695C	EXOC5_uc001xcs.2_Missense_Mutation_p.R374C|EXOC5_uc010trg.1_Missense_Mutation_p.R640C|EXOC5_uc010trh.1_Missense_Mutation_p.R630C	NM_006544	NP_006535	O00471	EXOC5_HUMAN	SEC10 protein	695					exocytosis|post-Golgi vesicle-mediated transport|protein transport|vesicle docking	cytoplasm				ovary(2)|breast(1)	3						TAATCAGCACGAAGTTGTACG	0.413													47	140					0	0	1	0	0	
ARID4A	5926	broad.mit.edu	37	14	58814545	58814545	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:58814545C>T	uc001xdp.2	+	15	1607	c.1353C>T	c.(1351-1353)ATC>ATT	p.I451I	ARID4A_uc001xdo.2_Silent_p.I451I|ARID4A_uc001xdq.2_Silent_p.I451I|ARID4A_uc010apg.1_Silent_p.I129I	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	451					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						AGGAAAATATCGATTCAAACA	0.313													26	64					0	0	1	0	0	
ARID4A	5926	broad.mit.edu	37	14	58831856	58831856	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:58831856C>T	uc001xdp.2	+	20	3303	c.3049C>T	c.(3049-3051)CGA>TGA	p.R1017*	ARID4A_uc001xdo.2_Nonsense_Mutation_p.R1017*|ARID4A_uc001xdq.2_Nonsense_Mutation_p.R1017*|ARID4A_uc010apg.1_Nonsense_Mutation_p.R695*	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	1017					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						AGATGAGTCTCGAAGCGTAAA	0.408													61	121					0	0	1	0	0	
KIAA0586	9786	broad.mit.edu	37	14	58932632	58932632	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:58932632T>G	uc001xdv.3	+	14	2184	c.1911T>G	c.(1909-1911)CAT>CAG	p.H637Q	KIAA0586_uc010trr.1_Missense_Mutation_p.H754Q|KIAA0586_uc001xdt.3_Missense_Mutation_p.H669Q|KIAA0586_uc001xdu.3_Missense_Mutation_p.H698Q|KIAA0586_uc010trs.1_Missense_Mutation_p.H628Q|KIAA0586_uc010trt.1_Missense_Mutation_p.H573Q|KIAA0586_uc010tru.1_Missense_Mutation_p.H573Q	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	637										ovary(1)	1						AAATGAAACATTCTGTTCCTG	0.378													36	81					0	0	1	0	0	
GPR135	64582	broad.mit.edu	37	14	59930948	59930948	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:59930948C>T	uc010apj.2	-	1	1112	c.997G>A	c.(997-999)GTC>ATC	p.V333I	GPR135_uc001xed.2_RNA	NM_022571	NP_072093	Q8IZ08	GP135_HUMAN	G protein-coupled receptor 135	333	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0				OV - Ovarian serous cystadenocarcinoma(108;0.134)		ATGATGAGGACGGTGGTGGCC	0.687													9	31					0	0	1	0	0	
JKAMP	51528	broad.mit.edu	37	14	59965469	59965469	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:59965469C>T	uc001xei.3	+	5	1027	c.525C>T	c.(523-525)TAC>TAT	p.Y175Y	JKAMP_uc001xef.3_Silent_p.Y161Y|JKAMP_uc001xeh.3_Silent_p.Y155Y|JKAMP_uc001xeg.3_Silent_p.Y169Y|JKAMP_uc010try.1_Silent_p.Y98Y|JKAMP_uc001xej.3_Silent_p.Y98Y	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	176	Helical; (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						TTATCTATTACGCATTCTGCT	0.289													6	15					0	0	1	0	0	
RTN1	6252	broad.mit.edu	37	14	60063484	60063484	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:60063484G>A	uc001xen.1	-	9	2519	c.2310C>T	c.(2308-2310)GGC>GGT	p.G770G	RTN1_uc001xem.1_Silent_p.G350G|RTN1_uc001xek.1_Silent_p.G202G|RTN1_uc001xel.1_RNA|RTN1_uc010apl.1_Silent_p.G187G	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	770	Reticulon.				neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		GCCTCTTAGCGCCTGGGATTT	0.393													32	88					0	0	1	0	0	
DHRS7	51635	broad.mit.edu	37	14	60619866	60619866	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:60619866A>G	uc001xes.2	-	4	608	c.424T>C	c.(424-426)TCC>CCC	p.S142P	C14orf135_uc001xeq.2_Intron|DHRS7_uc001xet.2_Missense_Mutation_p.S92P|DHRS7_uc001xeu.2_Missense_Mutation_p.S142P	NM_016029	NP_057113	Q9Y394	DHRS7_HUMAN	dehydrogenase/reductase (SDR family) member 7	142							binding|oxidoreductase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.121)		GAACGCTGGGACATTCCACCA	0.433													32	85					0	0	1	0	0	
C14orf39	317761	broad.mit.edu	37	14	60921733	60921733	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:60921733T>C	uc001xez.3	-	16	1599	c.1489A>G	c.(1489-1491)ATC>GTC	p.I497V	C14orf39_uc010apo.2_Missense_Mutation_p.I208V	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	497										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TCTGATGAGATTTCTGTATCA	0.299													32	62					0	0	1	0	0	
C14orf39	317761	broad.mit.edu	37	14	60950485	60950485	+	Missense_Mutation	SNP	C	T	T	rs147511742		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:60950485C>T	uc001xez.3	-	4	267	c.157G>A	c.(157-159)GAA>AAA	p.E53K	C14orf39_uc010apo.2_Intron	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	53										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TTTATAGTTTCGTGTATCCTA	0.274													13	32					0	0	1	0	0	
SIX4	51804	broad.mit.edu	37	14	61180839	61180839	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:61180839G>T	uc001xfc.2	-	3	1632	c.1632C>A	c.(1630-1632)TTC>TTA	p.F544L		NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	544						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		GAGAGCTCAAGAAAACCTTTC	0.433													17	42					6.49762e-13	7.22526e-13	1	1	0	
HIF1A	3091	broad.mit.edu	37	14	62207347	62207347	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:62207347T>C	uc001xfq.2	+	11	2063	c.1659_splice	c.e11+2	p.Q553_splice	HIF1A_uc001xfr.2_Splice_Site_p.Q553_splice|HIF1A_uc001xfs.2_Splice_Site_p.Q554_splice	NM_001530	NP_001521	Q16665	HIF1A_HUMAN	hypoxia-inducible factor 1, alpha subunit						cellular response to hypoxia|collagen metabolic process|connective tissue replacement involved in inflammatory response wound healing|elastin metabolic process|epithelial to mesenchymal transition|oxygen homeostasis|positive regulation of chemokine production|positive regulation of epithelial cell migration|positive regulation of hormone biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|regulation of transforming growth factor-beta2 production	cytoplasm|nucleolus|transcription factor complex	histone acetyltransferase binding|Hsp90 protein binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			kidney(3)|lung(1)	4				OV - Ovarian serous cystadenocarcinoma(108;1.62e-09)|BRCA - Breast invasive adenocarcinoma(234;0.189)		TCTACTCAGGTATATGAACTT	0.289													18	53					0	0	1	0	0	
HIF1A	3091	broad.mit.edu	37	14	62207893	62207893	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:62207893G>A	uc001xfq.2	+	12	2484	c.2080G>A	c.(2080-2082)GCT>ACT	p.A694T	HIF1A_uc001xfr.2_Missense_Mutation_p.A694T|HIF1A_uc001xfs.2_Missense_Mutation_p.A695T	NM_001530	NP_001521	Q16665	HIF1A_HUMAN	hypoxia-inducible factor 1, alpha subunit	694	ID.				cellular response to hypoxia|collagen metabolic process|connective tissue replacement involved in inflammatory response wound healing|elastin metabolic process|epithelial to mesenchymal transition|oxygen homeostasis|positive regulation of chemokine production|positive regulation of epithelial cell migration|positive regulation of hormone biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|regulation of transforming growth factor-beta2 production	cytoplasm|nucleolus|transcription factor complex	histone acetyltransferase binding|Hsp90 protein binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			kidney(3)|lung(1)	4				OV - Ovarian serous cystadenocarcinoma(108;1.62e-09)|BRCA - Breast invasive adenocarcinoma(234;0.189)		GTTATCTGTCGCTTTGAGTCA	0.338													21	53					0	0	1	0	0	
SYT16	83851	broad.mit.edu	37	14	62567180	62567180	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:62567180C>T	uc001xfu.1	+	6	1890	c.1693C>T	c.(1693-1695)CGG>TGG	p.R565W	SYT16_uc010tse.1_Missense_Mutation_p.R123W	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	565	C2 2.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GACGTCCATTCGGCGTGGTCA	0.458													7	18					0	0	1	0	0	
RHOJ	57381	broad.mit.edu	37	14	63671620	63671620	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:63671620C>T	uc001xgb.1	+	1	476	c.33C>T	c.(31-33)TGC>TGT	p.C11C		NM_020663	NP_065714	Q9H4E5	RHOJ_HUMAN	ras homolog gene family, member J precursor	11					actin cytoskeleton organization|regulation of cell shape|regulation of small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity				0				OV - Ovarian serous cystadenocarcinoma(108;0.00326)|all cancers(60;0.031)|BRCA - Breast invasive adenocarcinoma(234;0.119)		ACAGCAGCTGCGGCTGCAGGG	0.567													12	29					0	0	1	0	0	
PPP2R5E	5529	broad.mit.edu	37	14	64006376	64006376	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64006376A>G	uc001xgd.1	-	2	618	c.28T>C	c.(28-30)TCA>CCA	p.S10P	PPP2R5E_uc001xge.2_Missense_Mutation_p.S10P|PPP2R5E_uc010tsh.1_Missense_Mutation_p.S10P|PPP2R5E_uc001xgf.1_RNA|PPP2R5E_uc001xgg.3_Missense_Mutation_p.S10P	NM_006246	NP_006237	Q16537	2A5E_HUMAN	epsilon isoform of regulatory subunit B56,	10					signal transduction	cytoplasm|intracellular membrane-bounded organelle|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00197)|all cancers(60;0.0153)|BRCA - Breast invasive adenocarcinoma(234;0.128)		TTATCCACTGATGGAGGAGTA	0.443													17	68					0	0	1	0	0	
SYNE2	23224	broad.mit.edu	37	14	64408676	64408676	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64408676G>A	uc001xgm.2	+	5	541	c.311G>A	c.(310-312)CGA>CAA	p.R104Q	SYNE2_uc001xgk.2_Missense_Mutation_p.R104Q|SYNE2_uc001xgl.2_Missense_Mutation_p.R104Q	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	104	CH 1.|Cytoplasmic (Potential).|Actin-binding.				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CTAAGAAACCGATCAGTAAGT	0.338													18	45					0	0	1	0	0	
SYNE2	23224	broad.mit.edu	37	14	64453263	64453263	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64453263A>C	uc001xgm.2	+	19	2471	c.2241A>C	c.(2239-2241)GAA>GAC	p.E747D	SYNE2_uc001xgl.2_Missense_Mutation_p.E747D	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	747	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GACAAGTGGAAATCTGGGAGG	0.383													50	65					0	0	1	0	0	
SYNE2	23224	broad.mit.edu	37	14	64460662	64460662	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64460662G>A	uc001xgm.2	+	22	2986	c.2756G>A	c.(2755-2757)AGT>AAT	p.S919N	SYNE2_uc001xgl.2_Missense_Mutation_p.S919N	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	919	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GAAGAAAAGAGTAGAGATGTC	0.264													35	91					0	0	1	0	0	
SYNE2	23224	broad.mit.edu	37	14	64461803	64461803	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64461803A>C	uc001xgm.2	+	23	3053	c.2823A>C	c.(2821-2823)AAA>AAC	p.K941N	SYNE2_uc001xgl.2_Missense_Mutation_p.K941N	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	941	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AACAACTAAAAATAGATATTG	0.269													18	18					0	0	1	0	0	
SYNE2	23224	broad.mit.edu	37	14	64461861	64461861	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64461861A>C	uc001xgm.2	+	23	3111	c.2881A>C	c.(2881-2883)AAT>CAT	p.N961H	SYNE2_uc001xgl.2_Missense_Mutation_p.N961H	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	961	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AAAGCAAATAAATAAAGAAAA	0.299													4	47					0	0	1	0	0	
SYNE2	23224	broad.mit.edu	37	14	64473812	64473812	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64473812G>T	uc001xgm.2	+	31	4679	c.4449G>T	c.(4447-4449)GAG>GAT	p.E1483D	SYNE2_uc001xgl.2_Missense_Mutation_p.E1483D	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1483	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ATGAAGAAGAGAAGAGACATT	0.348													50	112					6.14515e-18	7.15987e-18	1	1	0	
SYNE2	23224	broad.mit.edu	37	14	64542723	64542723	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64542723C>T	uc001xgm.2	+	54	11157	c.10927C>T	c.(10927-10929)CGA>TGA	p.R3643*	SYNE2_uc001xgl.2_Nonsense_Mutation_p.R3643*|SYNE2_uc010apy.2_Nonsense_Mutation_p.R5*|SYNE2_uc010apw.1_Nonsense_Mutation_p.R349*|SYNE2_uc010apx.1_Nonsense_Mutation_p.R35*	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	3643	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GGAAAAACTGCGAATCAAGTA	0.388													20	45					0	0	1	0	0	
SYNE2	23224	broad.mit.edu	37	14	64588782	64588782	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64588782T>G	uc001xgm.2	+	69	13441	c.13211T>G	c.(13210-13212)TTT>TGT	p.F4404C	SYNE2_uc001xgl.2_Missense_Mutation_p.F4404C|SYNE2_uc010apy.2_Missense_Mutation_p.F789C|SYNE2_uc010apz.1_Missense_Mutation_p.F296C	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4404	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTCATAGAATTTAATGCTAAG	0.343													48	74					0	0	1	0	0	
ESR2	2100	broad.mit.edu	37	14	64727353	64727353	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64727353G>A	uc001xha.1	-	5	1234	c.766C>T	c.(766-768)CGG>TGG	p.R256W	ESR2_uc001xgu.2_Missense_Mutation_p.R256W|ESR2_uc001xgv.2_Missense_Mutation_p.R256W|ESR2_uc001xgw.2_RNA|ESR2_uc001xgx.2_Missense_Mutation_p.R256W|ESR2_uc001xgy.1_Missense_Mutation_p.R256W|ESR2_uc001xgz.1_Missense_Mutation_p.R256W|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Missense_Mutation_p.R256W|ESR2_uc010aqd.1_RNA	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	256	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	AGCAGCTCCCGCACTCGGGGC	0.682													19	50					0	0	1	0	0	
MTHFD1	4522	broad.mit.edu	37	14	64915014	64915014	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:64915014T>G	uc001xhb.2	+	23	2645	c.2258T>G	c.(2257-2259)GTA>GGA	p.V753G	MTHFD1_uc010aqf.2_Missense_Mutation_p.V809G	NM_005956	NP_005947	P11586	C1TC_HUMAN	methylenetetrahydrofolate dehydrogenase 1	753	Formyltetrahydrofolate synthetase.				folic acid metabolic process|folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process	cytosol|mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|methylenetetrahydrofolate dehydrogenase|protein binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(108;8.7e-12)|all cancers(60;3.29e-11)|BRCA - Breast invasive adenocarcinoma(234;0.0488)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	ATTCCAGTAGTAGTGGCCGTG	0.393													6	63					0	0	1	0	0	
C14orf50	145376	broad.mit.edu	37	14	65054078	65054078	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:65054078T>C	uc001xhl.1	+	10	974	c.878T>C	c.(877-879)TTT>TCT	p.F293S	C14orf50_uc001xhm.1_Missense_Mutation_p.F23S	NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	293										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		CGCATGACTTTTGTTCAGTTC	0.328													18	38					0	0	1	0	0	
PLEKHG3	26030	broad.mit.edu	37	14	65198128	65198128	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:65198128A>G	uc001xho.1	+	8	1168	c.899A>G	c.(898-900)TAC>TGC	p.Y300C	PLEKHG3_uc001xhn.1_Missense_Mutation_p.Y244C|PLEKHG3_uc001xhp.2_Missense_Mutation_p.Y300C|PLEKHG3_uc010aqh.1_5'UTR	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	300	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		CTGACCACCTACGGGGAGCTT	0.572													23	48					0	0	1	0	0	
RAB15	376267	broad.mit.edu	37	14	65417720	65417720	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:65417720A>G	uc001xhz.2	-	4	477	c.396T>C	c.(394-396)GAT>GAC	p.D132D	FNTB_uc010tsl.1_Intron|FNTB_uc010tsm.1_Intron|RAB15_uc010aqk.2_RNA	NM_198686	NP_941959	P59190	RAB15_HUMAN	RAB15, member RAS onocogene family	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)	1				all cancers(60;0.00136)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.0102)		TTGCCTTCCCATCTGGCCCTC	0.587													26	54					0	0	1	0	0	
PLEKHH1	57475	broad.mit.edu	37	14	68040045	68040045	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:68040045C>T	uc001xjl.1	+	12	1923	c.1781C>T	c.(1780-1782)ACG>ATG	p.T594M	PLEKHH1_uc010tsw.1_Missense_Mutation_p.T162M|PLEKHH1_uc001xjm.1_Missense_Mutation_p.T109M|PLEKHH1_uc001xjn.1_Missense_Mutation_p.T109M	NM_020715	NP_065766	Q9ULM0	PKHH1_HUMAN	pleckstrin homology domain containing, family H	594	PH 1.					cytoskeleton	binding				0				all cancers(60;0.000771)|OV - Ovarian serous cystadenocarcinoma(108;0.00502)|BRCA - Breast invasive adenocarcinoma(234;0.011)		CAGGTGAAGACGTGGAAGAGG	0.557													11	58					0	0	1	0	0	
PIGH	5283	broad.mit.edu	37	14	68060613	68060613	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:68060613A>G	uc001xjr.1	-	2	334	c.237T>C	c.(235-237)TAT>TAC	p.Y79Y	PIGH_uc010tsy.1_Silent_p.Y79Y	NM_004569	NP_004560	Q14442	PIGH_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	79					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|mitochondrion|nucleolus	phosphatidylinositol N-acetylglucosaminyltransferase activity			ovary(1)	1				all cancers(60;0.000592)|OV - Ovarian serous cystadenocarcinoma(108;0.00395)|BRCA - Breast invasive adenocarcinoma(234;0.00933)		CAAAATGGAGATAACCAAGCA	0.433													15	36					0	0	1	0	0	
SFRS5	6430	broad.mit.edu	37	14	70235601	70235601	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:70235601G>A	uc001xll.2	+	5	1735	c.284G>A	c.(283-285)CGA>CAA	p.R95Q	SFRS5_uc001xlm.2_RNA|SFRS5_uc001xln.1_Missense_Mutation_p.R95Q|SFRS5_uc001xlo.2_Missense_Mutation_p.R95Q|SFRS5_uc001xlp.2_Missense_Mutation_p.R95Q|SFRS5_uc001xlq.2_Missense_Mutation_p.R92Q	NM_006925	NP_008856	Q13243	SRSF5_HUMAN	splicing factor, arginine/serine-rich 5	95					mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|protein binding|RNA binding				0				all cancers(60;0.00144)|BRCA - Breast invasive adenocarcinoma(234;0.0132)|OV - Ovarian serous cystadenocarcinoma(108;0.0154)		CGCAGACCTCGAAATGATAGA	0.448													24	48					0	0	1	0	0	
SLC10A1	6554	broad.mit.edu	37	14	70252992	70252992	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:70252992G>A	uc001xlr.2	-	2	523	c.389C>T	c.(388-390)GCC>GTC	p.A130V		NM_003049	NP_003040	Q14973	NTCP_HUMAN	solute carrier family 10, member 1	130	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(1)	1				all cancers(60;0.00228)|BRCA - Breast invasive adenocarcinoma(234;0.0137)|OV - Ovarian serous cystadenocarcinoma(108;0.0226)		CATGCCAAGGGCACAGAAGGT	0.488													23	65					0	0	1	0	0	
SLC8A3	6547	broad.mit.edu	37	14	70633946	70633946	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:70633946G>T	uc001xly.2	-	2	1948	c.1194C>A	c.(1192-1194)GTC>GTA	p.V398V	SLC8A3_uc001xlw.2_Silent_p.V398V|SLC8A3_uc001xlx.2_Silent_p.V398V|SLC8A3_uc001xlz.2_Silent_p.V398V|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	398	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GGTCAAAGAAGACCTTGGAAA	0.512													66	130					1.17253e-29	1.43107e-29	1	1	0	
ADAM21	8747	broad.mit.edu	37	14	70924659	70924659	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:70924659T>G	uc001xmd.2	+	1	443	c.443T>G	c.(442-444)ATC>AGC	p.I148S		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	148					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		ATTGAACCCATCAGGCACTCT	0.443													10	33					0	0	1	0	0	
ADAM20	8748	broad.mit.edu	37	14	70989418	70989418	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:70989418T>G	uc001xme.2	-	2	2452	c.2207A>C	c.(2206-2208)AAT>ACT	p.N736T		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	686	Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		TCCCATCACATTTAATCCTTC	0.428													42	125					0	0	1	0	0	
PCNX	22990	broad.mit.edu	37	14	71443701	71443701	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:71443701A>G	uc001xmo.2	+	6	1093	c.647A>G	c.(646-648)GAC>GGC	p.D216G	PCNX_uc001xmn.3_Missense_Mutation_p.D216G|PCNX_uc010are.1_Missense_Mutation_p.D216G	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	216						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		GTCTCCAATGACTCCTTCATC	0.418													34	63					0	0	1	0	0	
PCNX	22990	broad.mit.edu	37	14	71455316	71455316	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:71455316C>T	uc001xmo.2	+	7	2790	c.2344C>T	c.(2344-2346)CGC>TGC	p.R782C	PCNX_uc001xmn.3_Missense_Mutation_p.R782C|PCNX_uc010are.1_Intron	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	782						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		AGTGTCATTTCGCCGTGAACG	0.557													51	113					0	0	1	0	0	
PCNX	22990	broad.mit.edu	37	14	71555976	71555976	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:71555976C>T	uc001xmo.2	+	30	5952	c.5506C>T	c.(5506-5508)CGA>TGA	p.R1836*	PCNX_uc010are.1_Nonsense_Mutation_p.R1725*|PCNX_uc010arf.1_Nonsense_Mutation_p.R624*	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1836						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TTCTTCAATTCGAGATGAATG	0.358													38	78					0	0	1	0	0	
RGS6	9628	broad.mit.edu	37	14	72818878	72818878	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:72818878T>G	uc001xna.3	+	3	683	c.160T>G	c.(160-162)TCC>GCC	p.S54A	RGS6_uc010ttn.1_Missense_Mutation_p.S54A|RGS6_uc001xmx.3_Missense_Mutation_p.S54A|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.S54A	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	54	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		GAGCTTTCTCTCCAAAATCCC	0.448													11	28					0	0	1	0	0	
RGS6	9628	broad.mit.edu	37	14	72941367	72941367	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:72941367G>A	uc001xna.3	+	10	1176	c.653G>A	c.(652-654)CGA>CAA	p.R218Q	RGS6_uc010ttn.1_Missense_Mutation_p.R218Q|RGS6_uc001xmx.3_Missense_Mutation_p.R218Q|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.R218Q|RGS6_uc010ttp.1_Missense_Mutation_p.R149Q|RGS6_uc001xmz.1_Missense_Mutation_p.R79Q	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	218					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		ATGGATATCCGAAAATGTCGA	0.363													18	37					0	0	1	0	0	
RGS6	9628	broad.mit.edu	37	14	72941375	72941375	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:72941375C>T	uc001xna.3	+	10	1184	c.661C>T	c.(661-663)CGA>TGA	p.R221*	RGS6_uc010ttn.1_Nonsense_Mutation_p.R221*|RGS6_uc001xmx.3_Nonsense_Mutation_p.R221*|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Nonsense_Mutation_p.R221*|RGS6_uc010ttp.1_Nonsense_Mutation_p.R152*|RGS6_uc001xmz.1_Nonsense_Mutation_p.R82*	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	221					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CCGAAAATGTCGACGTTTGAA	0.343													16	36					0	0	1	0	0	
DCAF4	26094	broad.mit.edu	37	14	73413857	73413857	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:73413857C>T	uc001xng.2	+	8	906	c.686C>T	c.(685-687)TCG>TTG	p.S229L	DCAF4_uc001xnj.2_Missense_Mutation_p.S229L|DCAF4_uc010ttr.1_Missense_Mutation_p.S207L|DCAF4_uc001xnh.2_Missense_Mutation_p.S129L|DCAF4_uc010tts.1_Missense_Mutation_p.S168L|DCAF4_uc010ttt.1_Missense_Mutation_p.S14L|DCAF4_uc001xni.2_Intron|DCAF4_uc001xnk.2_Missense_Mutation_p.S229L	NM_015604	NP_056419	Q8WV16	DCAF4_HUMAN	DDB1 and CUL4 associated factor 4 isoform 1	229						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CAGGTGAATTCGGTGTGCTGG	0.507													36	79					0	0	1	0	0	
ZFYVE1	53349	broad.mit.edu	37	14	73464805	73464805	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:73464805G>A	uc001xnm.2	-	3	1342	c.702C>T	c.(700-702)ATC>ATT	p.I234I	ZFYVE1_uc010arj.2_Silent_p.I234I	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	234						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		CTTCCGTATCGATCACTGCTA	0.542													22	38					0	0	1	0	0	
RBM25	58517	broad.mit.edu	37	14	73563732	73563732	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:73563732A>C	uc001xno.2	+	7	861	c.653A>C	c.(652-654)TAC>TCC	p.Y218S	RBM25_uc001xnn.3_Missense_Mutation_p.Y218S|RBM25_uc010ttu.1_Missense_Mutation_p.Y218S|RBM25_uc001xnp.2_Missense_Mutation_p.Y13S	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	218					apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		ATTCGTGAATACTCCAGTGAG	0.418													40	67					0	0	1	0	0	
PSEN1	5663	broad.mit.edu	37	14	73685857	73685857	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:73685857T>G	uc001xnr.2	+	12	1548	c.1264T>G	c.(1264-1266)TTA>GTA	p.L422V	PSEN1_uc001xnv.2_Missense_Mutation_p.L418V|PSEN1_uc010ark.2_Missense_Mutation_p.L418V|PSEN1_uc001xnu.2_RNA	NM_000021	NP_000012	P49768	PSN1_HUMAN	presenilin 1 isoform I-467	422	Required for interaction with CTNNB1.|Poly-Leu.|Helical; (Potential).				amyloid precursor protein catabolic process|anti-apoptosis|beta-amyloid metabolic process|cell-cell adhesion|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|smooth endoplasmic reticulum calcium ion homeostasis	apical plasma membrane|axon|cell cortex|cell surface|centrosome|ciliary rootlet|dendritic shaft|endoplasmic reticulum membrane|gamma-secretase complex|Golgi membrane|growth cone|integral to plasma membrane|kinetochore|lysosomal membrane|membrane raft|mitochondrial inner membrane|neuromuscular junction|neuronal cell body|nuclear outer membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum|smooth endoplasmic reticulum|Z disc	aspartic-type endopeptidase activity|beta-catenin binding|cadherin binding|calcium channel activity|PDZ domain binding			breast(1)|kidney(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.075)		GTGCCTTACATTATTACTCCT	0.398													73	138					0	0	1	0	0	
PAPLN	89932	broad.mit.edu	37	14	73732141	73732141	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:73732141G>A	uc010ttx.1	+	22	3352	c.3189G>A	c.(3187-3189)ATG>ATA	p.M1063I	PAPLN_uc001xnw.3_Missense_Mutation_p.M1036I|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.M1047I|PAPLN_uc010arm.2_Missense_Mutation_p.M262I|PAPLN_uc010arn.2_Missense_Mutation_p.M263I	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	1063	Ig-like C2-type 2.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		GGATCCGGATGACCTGCCGTG	0.632													27	66					0	0	1	0	0	
C14orf43	91748	broad.mit.edu	37	14	74186171	74186171	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:74186171A>G	uc001xot.2	-	12	3754	c.2971T>C	c.(2971-2973)TCC>CCC	p.S991P	C14orf43_uc001xos.2_Missense_Mutation_p.S256P|C14orf43_uc001xou.2_Missense_Mutation_p.S991P|C14orf43_uc010tud.1_Missense_Mutation_p.S991P|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	991					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		GGGGCGTTGGACTCGTGGCTC	0.532													9	14					0	0	1	0	0	
FAM161B	145483	broad.mit.edu	37	14	74404367	74404367	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:74404367C>A	uc001xpd.1	-	7	1709	c.1603G>T	c.(1603-1605)GAA>TAA	p.E535*		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						TCCTCCAGTTCTTTCTTATAT	0.358													57	92					4.10029e-35	5.05791e-35	1	1	0	
FAM161B	145483	broad.mit.edu	37	14	74404379	74404379	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:74404379C>A	uc001xpd.1	-	7	1697	c.1591G>T	c.(1591-1593)GAA>TAA	p.E531*		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						TTCTTATATTCTTTCGCTCTT	0.358													40	93					2.35958e-20	2.78446e-20	1	1	0	
YLPM1	56252	broad.mit.edu	37	14	75266073	75266073	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:75266073A>G	uc001xqj.3	+	5	4197	c.4073A>G	c.(4072-4074)GAG>GGG	p.E1358G	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1163	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		AGAAATCGAGAGCATGGGTAT	0.473													69	157					0	0	1	0	0	
PROX2	283571	broad.mit.edu	37	14	75329808	75329808	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:75329808T>G	uc001xqr.1	-	1	730	c.730A>C	c.(730-732)AAG>CAG	p.K244Q	PROX2_uc001xqq.1_Missense_Mutation_p.K170Q	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	244					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		AATAGTACCTTTTGTAATACC	0.572													28	38					0	0	1	0	0	
PROX2	283571	broad.mit.edu	37	14	75330161	75330161	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:75330161C>A	uc001xqr.1	-	1	377	c.377G>T	c.(376-378)AGG>ATG	p.R126M	PROX2_uc001xqq.1_Missense_Mutation_p.R52M	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	126					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		GCCCCCCTTCCTGTTGCCCTG	0.597													10	16					1.58986e-06	1.65575e-06	1	1	0	
MLH3	27030	broad.mit.edu	37	14	75513607	75513607	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:75513607C>A	uc001xrd.1	-	2	2968	c.2752G>T	c.(2752-2754)GAT>TAT	p.D918Y	MLH3_uc001xre.1_Missense_Mutation_p.D918Y|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	918					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		ATACAAAAATCTTGTGTTAAC	0.348								MMR					71	131					1.77791e-30	2.17416e-30	1	1	0	
FAM164C	79696	broad.mit.edu	37	14	75537991	75537991	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:75537991A>C	uc001xri.2	+	2	888	c.715A>C	c.(715-717)AAG>CAG	p.K239Q	FAM164C_uc001xrh.2_Missense_Mutation_p.K239Q	NM_001042430	NP_001035895	Q53FD0	F164C_HUMAN	chromosome 14 open reading frame 140 isoform b	239	Potential.									ovary(1)	1						GGGAAAGCTGAAGAAGACAGA	0.502													35	45					0	0	1	0	0	
FOS	2353	broad.mit.edu	37	14	75747600	75747600	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:75747600A>G	uc001xrn.2	+	4	821	c.616A>G	c.(616-618)ATC>GTC	p.I206V	FOS_uc010tva.1_Missense_Mutation_p.I170V|FOS_uc010asi.2_Missense_Mutation_p.I92V|FOS_uc001xro.2_Missense_Mutation_p.I58V	NM_005252	NP_005243	P01100	FOS_HUMAN	v-fos FBJ murine osteosarcoma viral oncogene	206					cellular response to reactive oxygen species|DNA methylation|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|SMAD protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway		protein dimerization activity|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			lung(2)|ovary(1)	3		all_lung(585;0.0138)|all_epithelial(191;0.0263)|all_neural(303;0.112)		BRCA - Breast invasive adenocarcinoma(234;0.0117)		TGCCTGCAAGATCCCTGATGA	0.557													41	104					0	0	1	0	0	
TTLL5	23093	broad.mit.edu	37	14	76330084	76330084	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:76330084T>C	uc001xrx.2	+	29	3606	c.3401T>C	c.(3400-3402)GTC>GCC	p.V1134A	TTLL5_uc010ask.1_Missense_Mutation_p.V1149A|TTLL5_uc001xrz.2_Missense_Mutation_p.V709A|TTLL5_uc001xsa.2_Missense_Mutation_p.V208A	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	1134					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		ACAGGGGTGGTCCCCCAGCAC	0.532													28	88					0	0	1	0	0	
C14orf179	112752	broad.mit.edu	37	14	76549621	76549621	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:76549621G>A	uc010asm.1	+	8	530	c.496G>A	c.(496-498)GAA>AAA	p.E166K	C14orf179_uc001xsg.2_Missense_Mutation_p.E171K|C14orf179_uc010tve.1_RNA	NM_001102564	NP_001096034	Q96FT9	IFT43_HUMAN	hypothetical protein LOC112752 isoform 2	166					cilium morphogenesis|intraflagellar retrograde transport						0				BRCA - Breast invasive adenocarcinoma(234;0.0199)		GCCGGAGCACGAAGTCCGGGA	0.592													10	30					0	0	1	0	0	
ESRRB	2103	broad.mit.edu	37	14	76905998	76905998	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:76905998G>A	uc001xsq.1	+	2	369	c.302G>A	c.(301-303)CGC>CAC	p.R101H	ESRRB_uc001xsr.2_Missense_Mutation_p.R101H|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	101						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		ATCCCCAAGCGCCTGTGCCTC	0.622													18	43					0	0	1	0	0	
VASH1	22846	broad.mit.edu	37	14	77236322	77236322	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:77236322T>G	uc001xst.2	+	2	1256	c.326T>G	c.(325-327)GTG>GGG	p.V109G	VASH1_uc001xss.2_Missense_Mutation_p.V109G	NM_014909	NP_055724	Q7L8A9	VASH1_HUMAN	vasohibin 1	109					cell cycle arrest|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of endothelial cell proliferation	endoplasmic reticulum|extracellular space					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0283)		ATACCGAGTGTGCCTACGTTC	0.587													31	97					0	0	1	0	0	
KIAA1737	85457	broad.mit.edu	37	14	77580408	77580408	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:77580408G>A	uc001xtd.2	+	4	1126	c.947G>A	c.(946-948)CGC>CAC	p.R316H	KIAA1737_uc001xtc.1_Missense_Mutation_p.R218H	NM_033426	NP_219494	Q9C0C6	K1737_HUMAN	KIAA1737 protein	316											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0284)		AAACATAGGCGCTTTCAGAAT	0.473													21	52					0	0	1	0	0	
POMT2	29954	broad.mit.edu	37	14	77746389	77746389	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:77746389A>G	uc001xti.2	-	17	1961	c.1760T>C	c.(1759-1761)TTC>TCC	p.F587S	POMT2_uc001xth.1_Missense_Mutation_p.F285S	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	587					protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		ATAGACTCGGAAATCTGTGTC	0.607													7	54					0	0	1	0	0	
C14orf174	161394	broad.mit.edu	37	14	77844125	77844125	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:77844125T>G	uc001xtq.1	+	1	364	c.364T>G	c.(364-366)TTG>GTG	p.L122V	TMED8_uc010ast.1_5'Flank|TMED8_uc001xto.1_5'Flank	NM_001010860	NP_001010860	Q9P1V8	SAM15_HUMAN	hypothetical protein LOC161394	122											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0278)		TTTCAAAGATTTGGAGGCCCC	0.468													78	143					0	0	1	0	0	
C14orf156	81892	broad.mit.edu	37	14	78177209	78177209	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:78177209C>T	uc001xue.3	+	2	156	c.126C>T	c.(124-126)TTC>TTT	p.F42F	ALKBH1_uc001xuc.1_5'Flank|ALKBH1_uc001xud.1_5'Flank	NM_031210	NP_112487	Q9GZT3	SLIRP_HUMAN	SRA stem-loop-interacting RNA-binding protein	42	RRM.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	nucleotide binding|RNA binding				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0276)		TTGCACAGTTCGGCCATGTCA	0.269													28	66					0	0	1	0	0	
SNW1	22938	broad.mit.edu	37	14	78198843	78198843	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:78198843G>T	uc001xuf.2	-	9	903	c.876C>A	c.(874-876)TAC>TAA	p.Y292*	SNW1_uc010tvm.1_Nonsense_Mutation_p.Y217*|SNW1_uc010asu.2_Nonsense_Mutation_p.Y130*|SNW1_uc010tvn.1_Nonsense_Mutation_p.Y292*	NM_012245	NP_036377	Q13573	SNW1_HUMAN	SKI-interacting protein	292	SNW.				negative regulation of transcription, DNA-dependent|nuclear mRNA splicing, via spliceosome|regulation of transcription from RNA polymerase II promoter	catalytic step 2 spliceosome|nucleoplasm	Notch binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		GATCAGCAATGTAGAGGGCTT	0.358													30	72					4.74835e-14	5.33807e-14	1	1	0	
NRXN3	9369	broad.mit.edu	37	14	78709752	78709752	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:78709752G>T	uc001xum.1	+	2		c.1109G>T						Q9Y4C0	NRX3A_HUMAN	Homo sapiens mRNA for KIAA0743 protein, partial cds.						axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GCAGGTGAATGACAGCAGCTG	0.642													7	5					8.12818e-05	8.32951e-05	1	1	0	
NRXN3	9369	broad.mit.edu	37	14	79454449	79454449	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:79454449C>A	uc001xun.2	+	12	2599	c.2108C>A	c.(2107-2109)TCT>TAT	p.S703Y	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.S828Y	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1076	EGF-like 3.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TGTGATTGTTCTATGACCTCT	0.443													35	81					6.97489e-18	8.11623e-18	1	1	0	
C14orf145	145508	broad.mit.edu	37	14	81259399	81259399	+	Missense_Mutation	SNP	C	T	T	rs138323270		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:81259399C>T	uc001xux.2	-	13	1436	c.1265G>A	c.(1264-1266)CGA>CAA	p.R422Q	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	422	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		CTCCTTAAGTCGATCCAACAT	0.453													29	66					0	0	1	0	0	
TSHR	7253	broad.mit.edu	37	14	81606118	81606118	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:81606118T>C	uc001xvd.1	+	9	944	c.788T>C	c.(787-789)CTT>CCT	p.L263P		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	263	Extracellular (Potential).|LRR 7.				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	CTTAAGAAACTTCCACTTTCC	0.488			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						24	50					0	0	1	0	0	
FLRT2	23768	broad.mit.edu	37	14	86088405	86088405	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:86088405C>A	uc001xvr.2	+	2	1314	c.547C>A	c.(547-549)CAA>AAA	p.Q183K	FLRT2_uc010atd.2_Missense_Mutation_p.Q183K	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	183	Extracellular (Potential).|LRR 6.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TGTGGACTTGCAAGAGCTGAG	0.507													21	43					1.96292e-10	2.12899e-10	1	1	0	
GALC	2581	broad.mit.edu	37	14	88416242	88416242	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:88416242T>C	uc001xvt.2	-	12	1684	c.1285A>G	c.(1285-1287)AAA>GAA	p.K429E	GALC_uc010tvw.1_RNA|GALC_uc010tvx.1_Missense_Mutation_p.K403E|GALC_uc010tvy.1_Missense_Mutation_p.K406E|GALC_uc010tvz.1_Missense_Mutation_p.K373E	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	429					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						TTTCCAAGTTTGGTATACCAT	0.328													32	71					0	0	1	0	0	
PTPN21	11099	broad.mit.edu	37	14	88945316	88945316	+	Missense_Mutation	SNP	G	A	A	rs147166836	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:88945316G>A	uc001xwv.3	-	13	2790	c.2459C>T	c.(2458-2460)TCG>TTG	p.S820L	PTPN21_uc010twc.1_Missense_Mutation_p.S616L	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	820						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						GAGAAGGTCCGACACCGGCCT	0.662													35	67					0	0	1	0	0	
EML5	161436	broad.mit.edu	37	14	89087177	89087177	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:89087177C>A	uc001xxg.2	-	39	5482	c.5296G>T	c.(5296-5298)GAA>TAA	p.E1766*	EML5_uc001xxf.2_Nonsense_Mutation_p.E553*|EML5_uc001xxd.2_5'Flank|EML5_uc001xxe.2_Nonsense_Mutation_p.E115*	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1758	WD 26.					cytoplasm|microtubule				ovary(3)	3						ATGATAAATTCTCCATTTTTC	0.388													6	13					0.00198382	0.00200883	1	1	0	
TDP1	55775	broad.mit.edu	37	14	90429695	90429695	+	Silent	SNP	C	T	T	rs143839052	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:90429695C>T	uc001xxy.2	+	3	536	c.237C>T	c.(235-237)AGC>AGT	p.S79S	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Silent_p.S79S|TDP1_uc010atn.2_Silent_p.S79S|TDP1_uc001xya.2_5'UTR|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Silent_p.S79S|TDP1_uc001xyc.1_Silent_p.S79S	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	79					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		GGCAGAAAAGCGGTTCCCAGG	0.498								Repair_of_DNA-protein_crosslinks					42	102					0	0	1	0	0	
KCNK13	56659	broad.mit.edu	37	14	90651298	90651298	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:90651298C>T	uc001xye.1	+	2	1620	c.1178C>T	c.(1177-1179)GCC>GTC	p.A393V		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	393	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				GGGGTGGGAGCCTTTGCAATC	0.577													10	21					0	0	1	0	0	
CCDC88C	440193	broad.mit.edu	37	14	91760555	91760555	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:91760555C>A	uc010aty.2	-	23	4173	c.4074G>T	c.(4072-4074)GAG>GAT	p.E1358D		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1358	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				GCTCCTTGTTCTCCATGTTCT	0.547													65	123					5.10652e-33	6.27364e-33	1	1	0	
CCDC88C	440193	broad.mit.edu	37	14	91779779	91779779	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:91779779G>A	uc010aty.2	-	15	2480	c.2381C>T	c.(2380-2382)GCT>GTT	p.A794V		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	794	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CTGGCGCTCAGCCTCCAGCTC	0.677													13	29					0	0	1	0	0	
CATSPERB	79820	broad.mit.edu	37	14	92088254	92088254	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:92088254T>G	uc001xzs.1	-	19	2098	c.1958A>C	c.(1957-1959)GAT>GCT	p.D653A	CATSPERB_uc010aub.1_Missense_Mutation_p.D175A	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	653					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				CTTCTCTATATCTGTATCTTC	0.393													17	24					0	0	1	0	0	
CATSPERB	79820	broad.mit.edu	37	14	92139258	92139258	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:92139258G>A	uc001xzs.1	-	13	1221	c.1081C>T	c.(1081-1083)CTT>TTT	p.L361F	CATSPERB_uc010aub.1_5'Flank	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	361					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TGGTCAACAAGAAATGTTAGC	0.358													55	117					0	0	1	0	0	
TRIP11	9321	broad.mit.edu	37	14	92491676	92491676	+	Missense_Mutation	SNP	C	T	T	rs148084609		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:92491676C>T	uc001xzy.2	-	3	1078	c.290G>A	c.(289-291)CGA>CAA	p.R97Q		NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	97	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		AAGTTGATTTCGGTAACTTGT	0.294			T	PDGFRB	AML								8	31					0	0	1	0	0	
ATXN3	4287	broad.mit.edu	37	14	92530710	92530710	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:92530710G>T	uc001yac.3	-	11	1109	c.1040C>A	c.(1039-1041)TCT>TAT	p.S347Y	ATXN3_uc010aug.2_Missense_Mutation_p.S332Y|ATXN3_uc001yad.3_Missense_Mutation_p.S292Y|ATXN3_uc010auh.2_Missense_Mutation_p.S281Y|ATXN3_uc001yae.3_Missense_Mutation_p.S249Y	NM_004993	NP_004984	P54252	ATX3_HUMAN	ataxin 3 reference isoform	Error:Variant_position_missing_in_P54252_after_alignment					cell death|nervous system development|nucleotide-excision repair|regulation of transcription, DNA-dependent|synaptic transmission|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(154;0.0768)		COAD - Colon adenocarcinoma(157;0.224)		AGTTTCTAAAGACATGGTCAC	0.318													38	79					8.01111e-26	9.67379e-26	1	1	0	
CPSF2	53981	broad.mit.edu	37	14	92609458	92609458	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:92609458A>G	uc001yah.1	+	9	1197	c.960A>G	c.(958-960)GTA>GTG	p.V320V		NM_017437	NP_059133	Q9P2I0	CPSF2_HUMAN	cleavage and polyadenylation specific factor 2	320					histone mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	hydrolase activity|protein binding|RNA binding			ovary(2)	2		all_cancers(154;0.0766)		COAD - Colon adenocarcinoma(157;0.222)		TGGCCCGTGTACCTAGCCCTA	0.418													33	43					0	0	1	0	0	
GOLGA5	9950	broad.mit.edu	37	14	93263988	93263988	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:93263988A>C	uc001yaz.1	+	2	388	c.206A>C	c.(205-207)AAC>ACC	p.N69T		NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	69	Cytoplasmic (Potential).				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		GCAGCTGATAACATTCGAAAT	0.388			T	RET	papillary thyroid								32	77					0	0	1	0	0	
GOLGA5	9950	broad.mit.edu	37	14	93301978	93301978	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:93301978C>T	uc001yaz.1	+	11	2202	c.2020C>T	c.(2020-2022)CGC>TGC	p.R674C	GOLGA5_uc001yba.1_Missense_Mutation_p.R71C	NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	674	Cytoplasmic (Potential).				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		CGGAAAAGTTCGCAAAGCTGC	0.383			T	RET	papillary thyroid								10	33					0	0	1	0	0	
GOLGA5	9950	broad.mit.edu	37	14	93303754	93303754	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:93303754G>A	uc001yaz.1	+	12	2257	c.2075G>A	c.(2074-2076)CGA>CAA	p.R692Q	GOLGA5_uc001yba.1_Intron	NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	692	Cytoplasmic (Potential).				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		ATTTTTCTCCGAAGATACCCC	0.348			T	RET	papillary thyroid								83	190					0	0	1	0	0	
C14orf142	84520	broad.mit.edu	37	14	93673210	93673210	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:93673210T>C	uc001ybl.1	-	1	250	c.173A>G	c.(172-174)CAC>CGC	p.H58R	UBR7_uc001ybm.3_5'Flank|UBR7_uc001ybn.3_5'Flank|UBR7_uc010auq.2_5'Flank	NM_032490	NP_115879	Q9BXV9	CN142_HUMAN	hypothetical protein LOC84520	58											0		all_cancers(154;0.00528)|Acute lymphoblastic leukemia(33;0.0497)|all_epithelial(191;0.125)|all_neural(303;0.13)		Epithelial(152;0.177)|all cancers(159;0.198)|COAD - Colon adenocarcinoma(157;0.203)		CGCCACCCGGTGCTGCACTTC	0.642											OREG0022885	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	40					0	0	1	0	0	
C14orf142	84520	broad.mit.edu	37	14	93673258	93673258	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:93673258T>C	uc001ybl.1	-	1	202	c.125A>G	c.(124-126)GAC>GGC	p.D42G	UBR7_uc001ybm.3_5'Flank|UBR7_uc001ybn.3_5'Flank|UBR7_uc010auq.2_5'Flank	NM_032490	NP_115879	Q9BXV9	CN142_HUMAN	hypothetical protein LOC84520	42											0		all_cancers(154;0.00528)|Acute lymphoblastic leukemia(33;0.0497)|all_epithelial(191;0.125)|all_neural(303;0.13)		Epithelial(152;0.177)|all cancers(159;0.198)|COAD - Colon adenocarcinoma(157;0.203)		CGTTACCATGTCCTTCATCTG	0.642											OREG0022885	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	43					0	0	1	0	0	
UBR7	55148	broad.mit.edu	37	14	93686640	93686640	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:93686640G>A	uc001ybm.3	+	9	1242	c.1006G>A	c.(1006-1008)GAC>AAC	p.D336N	UBR7_uc001ybn.3_Missense_Mutation_p.D260N|UBR7_uc010auq.2_Missense_Mutation_p.D185N	NM_175748	NP_786924	Q8N806	UBR7_HUMAN	ubiquitin protein ligase E3 component n-recognin	336							ubiquitin-protein ligase activity|zinc ion binding				0						AGATGAATACGACACAGTTCT	0.403													40	95					0	0	1	0	0	
KIAA1409	57578	broad.mit.edu	37	14	94071295	94071295	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:94071295G>A	uc001ybv.1	+	24	3360	c.3277G>A	c.(3277-3279)GAA>AAA	p.E1093K	KIAA1409_uc001ybs.1_Intron	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TGGGACACCCGAACAGACGCC	0.478													8	12					0	0	1	0	0	
KIAA1409	57578	broad.mit.edu	37	14	94088081	94088081	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:94088081C>A	uc001ybv.1	+	28	4120	c.4037C>A	c.(4036-4038)TCT>TAT	p.S1346Y	KIAA1409_uc001ybs.1_Missense_Mutation_p.S1324Y	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1501						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AAACAAAAATCTCTTGATATA	0.433													29	74					7.01153e-11	7.64216e-11	1	1	0	
FAM181A	90050	broad.mit.edu	37	14	94394942	94394942	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:94394942A>G	uc001ybz.1	+	3	804	c.497A>G	c.(496-498)TAC>TGC	p.Y166C	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Missense_Mutation_p.Y104C|FAM181A_uc001yca.1_Missense_Mutation_p.Y104C	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	166											0						AGGAACCCCTACAGGGAGGAA	0.647													10	29					0	0	1	0	0	
ASB2	51676	broad.mit.edu	37	14	94405676	94405676	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:94405676C>T	uc001ycc.1	-	6	1740	c.1251G>A	c.(1249-1251)GCG>GCA	p.A417A	ASB2_uc001ycb.1_Silent_p.A111A|ASB2_uc001ycd.2_Silent_p.A465A|ASB2_uc001yce.1_Silent_p.A363A	NM_016150	NP_057234	Q96Q27	ASB2_HUMAN	ankyrin repeat and SOCS box-containing protein	417	ANK 11.				intracellular signal transduction					ovary(1)|pancreas(1)	2		all_cancers(154;0.13)		COAD - Colon adenocarcinoma(157;0.217)|Epithelial(152;0.232)		CGTCGATGTTCGCGCCGTGGT	0.652													18	44					0	0	1	0	0	
SERPINA11	256394	broad.mit.edu	37	14	94914614	94914614	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:94914614A>C	uc001ydd.1	-	2	558	c.498T>G	c.(496-498)TTT>TTG	p.F166L		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	166					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		AGTTGGCAGAAAAAGCAAAAG	0.463													71	112					0	0	1	0	0	
SERPINA9	327657	broad.mit.edu	37	14	94929505	94929505	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:94929505G>A	uc001ydf.2	-	5	1394	c.1233C>T	c.(1231-1233)TTC>TTT	p.F411F	SERPINA9_uc001yde.2_Silent_p.F311F|SERPINA9_uc010avc.2_Silent_p.F262F|SERPINA9_uc001ydg.2_Silent_p.F375F	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	393					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		TCATCATCAGGAAGGTCCTAT	0.473													44	63					0	0	1	0	0	
SERPINA12	145264	broad.mit.edu	37	14	94964562	94964562	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:94964562T>G	uc001ydj.2	-	3	969	c.173A>C	c.(172-174)AAG>ACG	p.K58T		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	58					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		CTTGAGCAGCTTAAAGCCTAA	0.507													73	104					0	0	1	0	0	
SERPINA4	5267	broad.mit.edu	37	14	95033396	95033396	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:95033396C>T	uc001ydk.2	+	3	805	c.739C>T	c.(739-741)CTG>TTG	p.L247L	SERPINA4_uc010avd.2_Silent_p.L284L|SERPINA4_uc001ydl.2_Silent_p.L247L	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	247					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		GCCCATGATGCTGCAGGACCA	0.498													20	56					0	0	1	0	0	
CLMN	79789	broad.mit.edu	37	14	95660901	95660901	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:95660901C>T	uc001yef.2	-	11	2857	c.2741G>A	c.(2740-2742)CGA>CAA	p.R914Q		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	914						integral to membrane	actin binding				0				Epithelial(152;0.193)		AGTATGTCGTCGAAGGTAAAT	0.468													21	49					0	0	1	0	0	
C14orf49	161176	broad.mit.edu	37	14	95903210	95903210	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:95903210C>T	uc001yei.3	-	14	2500	c.2485G>A	c.(2485-2487)GCA>ACA	p.A829T	C14orf49_uc010avi.2_Missense_Mutation_p.A824T	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	829	Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		GTTCTCATTGCGATGATTCTA	0.498													37	63					0	0	1	0	0	
GLRX5	51218	broad.mit.edu	37	14	96010292	96010292	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:96010292G>T	uc001yem.1	+	2	408	c.304G>T	c.(304-306)GAC>TAC	p.D102Y		NM_016417	NP_057501	Q86SX6	GLRX5_HUMAN	glutaredoxin 5	102	Glutaredoxin.				cell redox homeostasis|hemopoiesis	mitochondrion	2 iron, 2 sulfur cluster binding|electron carrier activity|metal ion binding|protein disulfide oxidoreductase activity				0		all_cancers(154;0.135)		Epithelial(152;0.133)|COAD - Colon adenocarcinoma(157;0.21)|all cancers(159;0.212)		AGGCATTAAAGACTATTCCAA	0.418													15	112					9.16793e-09	9.77785e-09	1	1	0	
BDKRB1	623	broad.mit.edu	37	14	96730670	96730670	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:96730670G>A	uc001yfh.2	+	3	859	c.651G>A	c.(649-651)GCG>GCA	p.A217A	BDKRB1_uc010avn.2_Silent_p.A217A	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	217	Helical; Name=5; (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		CACTGGCTGCGATCGTCTTCT	0.582													28	63					0	0	1	0	0	
PAPOLA	10914	broad.mit.edu	37	14	97010496	97010496	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:97010496C>T	uc001yfq.2	+	15	1510	c.1300C>T	c.(1300-1302)CGC>TGC	p.R434C	PAPOLA_uc001yfr.2_Missense_Mutation_p.R434C|PAPOLA_uc010twv.1_Missense_Mutation_p.R434C|PAPOLA_uc010avp.2_Missense_Mutation_p.R184C	NM_032632	NP_116021	P51003	PAPOA_HUMAN	poly(A) polymerase alpha	434					mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|RNA binding				0		all_cancers(154;0.0555)|all_epithelial(191;0.149)|Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.213)		GGAAGAATTTCGCACGATGTG	0.378													27	51					0	0	1	0	0	
MIR1197	100302250	broad.mit.edu	37	14	101491968	101491968	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:101491968G>A	hsa-mir-1197|MI0006656	+			c.68G>A			uc001yjy.1_5'Flank|MIR323_hsa-mir-323|MI0000807_5'Flank|MIR758_hsa-mir-758|MI0003757_5'Flank|MIR329-1_hsa-mir-329-1|MI0001725_5'Flank|MIR329-2_hsa-mir-329-2|MI0001726_5'Flank																	0						AGGACACATGGTCTACTTCTT	0.507													24	50					0	0	1	0	0	
MIR381	494330	broad.mit.edu	37	14	101512287	101512287	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:101512287C>T	hsa-mir-381|MI0000789	+			c.31C>T			uc010awd.2_RNA|MIR487B_hsa-mir-487b|MI0003530_5'Flank|MIR539_hsa-mir-539|MI0003514_5'Flank|MIR889_hsa-mir-889|MI0005540_5'Flank|MIR544_hsa-mir-544|MI0003515_5'Flank																	0						TTTGTATATTCGGTTTATTGA	0.507													4	10					0	0	1	0	0	
MIR382	494331	broad.mit.edu	37	14	101520682	101520682	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:101520682T>G	hsa-mir-382|MI0000790	+			c.40T>G			uc010awe.2_RNA|uc010txo.1_5'Flank|MIR134_hsa-mir-134|MI0000474_5'Flank|MIR668_hsa-mir-668|MI0003761_5'Flank|MIR485_hsa-mir-485|MI0002469_5'Flank|hsa-mir-323b|MI0014206_5'Flank																	0						TCGCTTTACTTATGACGAATC	0.453													10	26					0	0	1	0	0	
MIR377	494326	broad.mit.edu	37	14	101528414	101528414	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:101528414C>T	hsa-mir-377|MI0000785	+			c.28C>T			uc010awh.1_RNA|MIR541_hsa-mir-541|MI0005539_5'Flank																	0						TTGGTGAATTCGCTTTATTTA	0.512													43	100					0	0	1	0	0	
DYNC1H1	1778	broad.mit.edu	37	14	102481480	102481480	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:102481480G>A	uc001yks.2	+	35	7217	c.7053G>A	c.(7051-7053)GCG>GCA	p.A2351A	DYNC1H1_uc001ykt.1_5'UTR	NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2351	AAA 2 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TGAAATACGCGACCTTGGCCA	0.473													41	65					0	0	1	0	0	
WDR20	91833	broad.mit.edu	37	14	102676053	102676053	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:102676053C>T	uc001ykz.2	+	3	1595	c.1546C>T	c.(1546-1548)CGA>TGA	p.R516*	WDR20_uc001yky.1_Nonsense_Mutation_p.R259*|WDR20_uc001yla.2_Nonsense_Mutation_p.R392*|WDR20_uc001ylb.2_Nonsense_Mutation_p.R455*|WDR20_uc010txu.1_Nonsense_Mutation_p.R547*|WDR20_uc001ylc.2_Intron|WDR20_uc001yld.2_Nonsense_Mutation_p.R516*|WDR20_uc001yle.2_Nonsense_Mutation_p.R455*|WDR20_uc001ylf.2_Nonsense_Mutation_p.R528*	NM_144574	NP_653175	Q8TBZ3	WDR20_HUMAN	WD repeat domain 20 isoform 2	516											0						CCTGTGTCCTCGAATGGAAGA	0.433											OREG0022939	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	75					0	0	1	0	0	
ANKRD9	122416	broad.mit.edu	37	14	102973383	102973383	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:102973383C>T	uc001ylx.1	-	2	1240	c.844G>A	c.(844-846)GCC>ACC	p.A282T	ANKRD9_uc001yly.1_Missense_Mutation_p.A282T|ANKRD9_uc001ylz.1_Missense_Mutation_p.A282T|ANKRD9_uc001yma.1_Missense_Mutation_p.A282T|ANKRD9_uc010awm.1_Missense_Mutation_p.A282T	NM_152326	NP_689539	Q96BM1	ANKR9_HUMAN	ankyrin repeat domain 9	282										pancreas(1)	1						ACCTGCATGGCGCGCGCGAAG	0.726													5	10					0	0	1	0	0	
TRAF3	7187	broad.mit.edu	37	14	103341991	103341991	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:103341991A>C	uc001ymc.1	+	5	681	c.328A>C	c.(328-330)ATT>CTT	p.I110L	TRAF3_uc001yme.1_Missense_Mutation_p.I110L|TRAF3_uc001ymd.1_Missense_Mutation_p.I110L|TRAF3_uc010txy.1_Missense_Mutation_p.I110L	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	110					apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		CAAGAGAGAAATTCTGGCTCT	0.408													54	104					0	0	1	0	0	
CDC42BPB	9578	broad.mit.edu	37	14	103447311	103447311	+	Silent	SNP	C	T	T	rs34469943	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:103447311C>T	uc001ymi.1	-	8	1171	c.939G>A	c.(937-939)GCG>GCA	p.A313A		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	313	Protein kinase.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		TGAGGTCCTTCGCTTCTTCAG	0.493													32	67					0	0	1	0	0	
CDC42BPB	9578	broad.mit.edu	37	14	103474857	103474857	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:103474857A>C	uc001ymi.1	-	3	535	c.303T>G	c.(301-303)ATT>ATG	p.I101M		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	101	Protein kinase.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		TCATTGCATAAATTCGTTCAG	0.433													28	31					0	0	1	0	0	
CDC42BPB	9578	broad.mit.edu	37	14	103474861	103474861	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:103474861C>T	uc001ymi.1	-	3	531	c.299G>A	c.(298-300)CGA>CAA	p.R100Q		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	100	Protein kinase.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		TGCATAAATTCGTTCAGTATT	0.433													13	45					0	0	1	0	0	
EIF5	1983	broad.mit.edu	37	14	103803470	103803470	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:103803470G>A	uc001ymq.2	+	6	867	c.345G>A	c.(343-345)AAG>AAA	p.K115K	EIF5_uc001ymr.2_Silent_p.K115K|EIF5_uc001yms.2_Silent_p.K115K|EIF5_uc001ymt.2_Silent_p.K115K|EIF5_uc001ymu.2_Silent_p.K115K|SNORA28_uc001ymv.1_5'Flank	NM_001969	NP_001960	P55010	IF5_HUMAN	eukaryotic translation initiation factor 5	115					regulation of translational initiation|RNA metabolic process	cytosol	GTP binding|GTPase activity|translation initiation factor activity			pancreas(1)|breast(1)|skin(1)	3		Melanoma(154;0.155)	Epithelial(46;0.182)			ATCCAAAGAAGCAAACAATAG	0.373													23	48					0	0	1	0	0	
MARK3	4140	broad.mit.edu	37	14	103871548	103871548	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:103871548G>A	uc001ymz.3	+	2	853	c.187G>A	c.(187-189)GGC>AGC	p.G63S	MARK3_uc001ymx.3_Missense_Mutation_p.G63S|MARK3_uc001ymw.3_Missense_Mutation_p.G63S|MARK3_uc001yna.3_Missense_Mutation_p.G63S|MARK3_uc001ymy.3_Missense_Mutation_p.G63S|MARK3_uc010awp.2_Missense_Mutation_p.G63S	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	63	ATP (By similarity).|Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			GAAAACAATCGGCAAGGGGAA	0.438													24	37					0	0	1	0	0	
XRCC3	7517	broad.mit.edu	37	14	104174984	104174984	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:104174984G>A	uc001yny.3	-	5	448	c.68C>T	c.(67-69)TCG>TTG	p.S23L	XRCC3_uc001ynx.3_Missense_Mutation_p.S23L|XRCC3_uc001ynz.3_Missense_Mutation_p.S23L|XRCC3_uc001yoa.3_Missense_Mutation_p.S23L|XRCC3_uc001yob.1_RNA	NM_005432	NP_005423	O43542	XRCC3_HUMAN	X-ray repair cross complementing protein 3	23					DNA recombination|DNA repair	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|DNA binding|DNA-dependent ATPase activity				0		Melanoma(154;0.155)|all_epithelial(191;0.19)		Epithelial(152;0.239)		CTCCTTTACCGATTTCAGTTT	0.468								Direct_reversal_of_damage|Homologous_recombination					22	42					0	0	1	0	0	
TDRD9	122402	broad.mit.edu	37	14	104484456	104484456	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:104484456C>A	uc001yom.3	+	23	2389	c.2359C>A	c.(2359-2361)CTT>ATT	p.L787I	TDRD9_uc001yon.3_Missense_Mutation_p.L525I	NM_153046	NP_694591	Q8NDG6	TDRD9_HUMAN	tudor domain containing 9	787					cell differentiation|DNA methylation involved in gamete generation|fertilization|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	nucleus|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(2)|central_nervous_system(1)	3		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0768)				CTATGGATTTCTTTACTATAA	0.323													7	8					1	1	1	1	0	
ASPG	374569	broad.mit.edu	37	14	104570738	104570738	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:104570738G>A	uc001yoq.1	+	8	911	c.851G>A	c.(850-852)CGG>CAG	p.R284Q	ASPG_uc001yoo.1_Missense_Mutation_p.R312Q|ASPG_uc001yop.1_Missense_Mutation_p.R284Q|ASPG_uc001yor.1_Missense_Mutation_p.R284Q	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	284	Asparaginase.				lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						CAGGAGCTGCGGGTGGCCACC	0.647													14	31					0	0	1	0	0	
KIAA0284	283638	broad.mit.edu	37	14	105360682	105360682	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:105360682G>A	uc010axb.2	+	17	4556	c.4332G>A	c.(4330-4332)GAG>GAA	p.E1444E	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Silent_p.E1374E|KIAA0284_uc001yps.2_Silent_p.E1385E|KIAA0284_uc001ypt.2_Silent_p.E112E	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	1479						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		TCAACGCCGAGAACGAGGTGC	0.632													26	44					0	0	1	0	0	
AHNAK2	113146	broad.mit.edu	37	14	105410777	105410777	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:105410777C>T	uc010axc.1	-	7	11131	c.11011G>A	c.(11011-11013)GAT>AAT	p.D3671N	AHNAK2_uc001ypx.2_Missense_Mutation_p.D3571N	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3671						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			AGACTCACATCGGCTTCCACC	0.582													77	172					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106208487	106208487	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:106208487C>T	uc010tyt.1	-	3627		c.58727G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Missense_Mutation_p.R4Q|uc001ysf.2_Missense_Mutation_p.R4Q					Parts of antibodies, mostly variable regions.												0						CTCAGGGGTCCGGGAGATCAT	0.592													45	103					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106329504	106329504	+	RNA	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:106329504A>C	uc010tyt.1	-	3590		c.54410T>G			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_5'Flank|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_5'Flank|uc001ysk.1_5'Flank|uc001ysl.1_5'Flank|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						CACCCCACAAAAACCCAGCCA	0.567													19	30					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106478340	106478340	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:106478340T>C	uc010tyt.1	-	1857		c.35946A>G								Parts of antibodies, mostly variable regions.												0						ACAGTGCAGGTGAGGGACAGG	0.617													40	44					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106539380	106539380	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:106539380G>A	uc010tyt.1	-	1519		c.31313C>T								Parts of antibodies, mostly variable regions.												0						CTGGGAGTGGGCACCTGTGGA	0.542													44	134					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106573429	106573429	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:106573429T>C	uc010tyt.1	-	1362		c.29096A>G								Parts of antibodies, mostly variable regions.												0						CCAGCTCATGTAGTAGTCACT	0.557													94	202					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106733326	106733326	+	RNA	SNP	G	A	A	rs146235389	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:106733326G>A	uc010tyt.1	-	547		c.17410C>T								Parts of antibodies, mostly variable regions.												0						GGAGCCTGTCGCACCCAGTGC	0.537													96	158					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106845354	106845354	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:106845354G>A	uc010tyt.1	-	308		c.12298C>T								Parts of antibodies, mostly variable regions.												0						CGTGTCCTCGGCCCTCAGGCT	0.532													60	139					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106919245	106919245	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:106919245T>C	uc010tyt.1	-	243		c.10582A>G			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						ATACAGTGTGTTCTTTGAATC	0.468													3	9					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	107013178	107013178	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:107013178G>A	uc010tyt.1	-	169		c.7879C>T								Parts of antibodies, mostly variable regions.												0						CTGTACAGGAGAGTCTCAGGG	0.547													46	91					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	107083703	107083703	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:107083703C>T	uc010tyt.1	-	112		c.5171G>A								Parts of antibodies, mostly variable regions.												0						CACAGGAGGTCCAGGACTCTC	0.488													24	55					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	15	20490503	20490503	+	Splice_Site	SNP	G	T	T	rs28558203		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:20490503G>T	uc001ytf.1	+	4		c.484_splice	c.e4-1							full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGTTGCTTCAGCTCTGGACCT	0.443													19	241					1.50039e-11	1.64695e-11	1	1	0	
Unknown	0	broad.mit.edu	37	15	20490520	20490520	+	RNA	SNP	G	A	A	rs71466675	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:20490520G>A	uc001ytf.1	+	4		c.500G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		ACCTTGTCAAGAAGTTGTTGG	0.433													42	305					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	15	20496610	20496610	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:20496610G>A	uc001ytf.1	+	6		c.663G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCTACTAGTCGAAAGTGGCCT	0.438													9	60					0	0	1	0	0	
LOC646214	646214	broad.mit.edu	37	15	21936465	21936465	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:21936465C>A	uc010tzj.1	-	1		c.4275G>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TTATGCAGACCATTTCTTTAA	0.333													5	53					0.014758	0.0148705	1	1	0	
LOC646214	646214	broad.mit.edu	37	15	21937486	21937486	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:21937486G>T	uc010tzj.1	-	1		c.3254C>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TTTGTCTAAAGACTTGGCACC	0.398													22	173					2.27525e-19	2.67301e-19	1	1	0	
LOC646214	646214	broad.mit.edu	37	15	21937903	21937903	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:21937903G>T	uc010tzj.1	-	1		c.2837C>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						AGATGGAGGAGAAATTTCTGG	0.438													55	571					2.01807e-28	2.45391e-28	1	1	0	
CXADRP2	646243	broad.mit.edu	37	15	22016264	22016264	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:22016264C>T	uc010tzk.1	-	1	615	c.453G>A	c.(451-453)TTG>TTA	p.L151L		NR_024387				RecName: Full=Coxsackievirus and adenovirus receptor; AltName: Full=Coxsackievirus B-adenovirus receptor; AltName: Full=HCVADR;          Short=hCAR; AltName: Full=CVB3-binding protein; Flags: Precursor;												0						GTGAGTCAGACAATTTTTGCC	0.368													7	44					0	0	1	0	0	
OR4M2	390538	broad.mit.edu	37	15	22369069	22369069	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:22369069G>A	uc010tzu.1	+	1	494	c.494G>A	c.(493-495)CGA>CAA	p.R165Q	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CTCATTGTTCGACTTCCTTTC	0.498													69	394					0	0	1	0	0	
OR4N4	283694	broad.mit.edu	37	15	22382966	22382966	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:22382966G>A	uc001yuc.1	+	7	1475	c.494G>A	c.(493-495)CGC>CAC	p.R165H	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Missense_Mutation_p.R165H	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CTCATCCTCCGCTTGCCTTTT	0.512													33	129					0	0	1	0	0	
OR4N3P	390539	broad.mit.edu	37	15	22413801	22413801	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:22413801C>T	uc001yuf.2	+	1	100	c.100C>T	c.(100-102)CTC>TTC	p.L34F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GGAGGGATTACTCCTTGTTGT	0.493													35	207					0	0	1	0	0	
OR4N3P	390539	broad.mit.edu	37	15	22414131	22414131	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:22414131C>T	uc001yuf.2	+	1	430	c.430C>T	c.(430-432)CGC>TGC	p.R144C		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CATTCTTTGTCGCATACGAGC	0.463													60	127					0	0	1	0	0	
TUBGCP5	114791	broad.mit.edu	37	15	22867565	22867565	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:22867565C>A	uc001yur.3	+	19	2771	c.2641C>A	c.(2641-2643)CAT>AAT	p.H881N	TUBGCP5_uc001yuq.2_Missense_Mutation_p.H881N	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	881					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		ACAGCAGATTCATCGCATGTT	0.443													44	61					9.39024e-22	1.11566e-21	1	1	0	
NIPA2	81614	broad.mit.edu	37	15	23014503	23014503	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:23014503G>A	uc001yux.2	-	6	835	c.222C>T	c.(220-222)TTC>TTT	p.F74F	NIPA2_uc001yuy.2_Silent_p.F74F|NIPA2_uc001yuz.2_Silent_p.F74F|NIPA2_uc001yva.2_Silent_p.F55F|NIPA2_uc001yvb.2_Silent_p.F74F|NIPA2_uc010ayb.2_Silent_p.F55F	NM_030922	NP_112184	Q8N8Q9	NIPA2_HUMAN	non imprinted in Prader-Willi/Angelman syndrome	74	Helical; (Potential).					early endosome|integral to membrane|plasma membrane				haematopoietic_and_lymphoid_tissue(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;1.48e-06)|Epithelial(43;1.44e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000353)		CATACGCAGCGAAGTTGGCCA	0.468													7	19					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	15	23412214	23412214	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:23412214C>A	uc010uab.1	-	2	136	c.111G>T	c.(109-111)AAG>AAT	p.K37N		NM_001001413	NP_001001413			golgi autoantigen, golgin subfamily a, 6-like 1																		TTATTTTCTTCTTTTTGGTGT	0.512													17	50					9.16793e-09	9.77785e-09	1	1	0	
SNRPN	6638	broad.mit.edu	37	15	25222096	25222096	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:25222096G>T	uc001ywp.1	+	10	1230	c.340G>T	c.(340-342)GTA>TTA	p.V114L	SNRPN_uc001ywq.1_Missense_Mutation_p.V114L|SNRPN_uc001ywr.1_Missense_Mutation_p.V114L|SNRPN_uc001yws.1_Missense_Mutation_p.V114L|SNRPN_uc001ywt.1_Missense_Mutation_p.V114L|SNRPN_uc001ywv.1_Missense_Mutation_p.V117L|SNRPN_uc001yww.1_Missense_Mutation_p.V114L|SNRPN_uc001ywx.1_Missense_Mutation_p.V114L|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	114					RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		TGGTAGAGGAGTACCAGCTGG	0.587									Prader-Willi_syndrome				24	53					2.89027e-11	3.162e-11	1	1	0	
ATP10A	57194	broad.mit.edu	37	15	25961884	25961884	+	Missense_Mutation	SNP	C	T	T	rs138618267	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:25961884C>T	uc010ayu.2	-	9	1875	c.1769G>A	c.(1768-1770)CGA>CAA	p.R590Q		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	590	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		TGCCTTTGTTCGTGGCTGATC	0.592													38	77					0	0	1	0	0	
GABRB3	2562	broad.mit.edu	37	15	26866631	26866631	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:26866631G>A	uc001zaz.2	-	4	433	c.291C>T	c.(289-291)CTC>CTT	p.L97L	GABRB3_uc010uae.1_Silent_p.L12L|GABRB3_uc001zba.2_Silent_p.L97L|GABRB3_uc001zbb.2_Silent_p.L153L|GABRB3_uc001zbc.2_RNA	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	97	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CAGAATAGGCGAGCCTTTTAT	0.428													28	68					0	0	1	0	0	
GABRA5	2558	broad.mit.edu	37	15	27114458	27114458	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:27114458C>A	uc001zbd.1	+	4	402	c.63C>A	c.(61-63)TCC>TCA	p.S21S	GABRB3_uc001zbb.2_Intron	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	21					gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTTGTATTTCCATGAACTTAT	0.388													29	67					4.02929e-09	4.31984e-09	1	1	0	
GABRA5	2558	broad.mit.edu	37	15	27128679	27128679	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:27128679G>A	uc001zbd.1	+	7	811	c.472G>A	c.(472-474)GAC>AAC	p.D158N	GABRB3_uc001zbb.2_Intron	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	158	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GCTGGAGGACGACGGCACCCT	0.537													15	14					0	0	1	0	0	
GABRG3	2567	broad.mit.edu	37	15	27222237	27222237	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:27222237A>G	uc001zbg.1	+	2	308	c.142A>G	c.(142-144)ACT>GCT	p.T48A	GABRG3_uc001zbf.2_Missense_Mutation_p.T48A	NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	48	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		CACCGACGTGACTCTTATTCT	0.383													41	71					0	0	1	0	0	
OCA2	4948	broad.mit.edu	37	15	28200318	28200318	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28200318C>A	uc001zbh.3	-	17	1938	c.1828G>T	c.(1828-1830)GAA>TAA	p.E610*	OCA2_uc010ayv.2_Nonsense_Mutation_p.E586*	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	610	Cytoplasmic (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		TTTTGGAGTTCTTGGATATTG	0.453									Oculocutaneous_Albinism				46	111					5.73435e-26	6.92654e-26	1	1	0	
HERC2	8924	broad.mit.edu	37	15	28377829	28377829	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28377829G>A	uc001zbj.2	-	80	12484	c.12378C>T	c.(12376-12378)AGC>AGT	p.S4126S		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4126	RCC1 16.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CCTCACTGTCGCTGTGCCCCA	0.667													39	61					0	0	1	0	0	
HERC2	8924	broad.mit.edu	37	15	28386977	28386977	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28386977G>A	uc001zbj.2	-	77	11822	c.11716C>T	c.(11716-11718)CGT>TGT	p.R3906C		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3906					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ATTAATTCACGAATTTTCTTA	0.353													79	148					0	0	1	0	0	
HERC2	8924	broad.mit.edu	37	15	28408287	28408287	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28408287C>T	uc001zbj.2	-	69	10805	c.10699G>A	c.(10699-10701)GAT>AAT	p.D3567N		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3567					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GAGAGCACATCCCTGCCCCTG	0.637													29	71					0	0	1	0	0	
HERC2	8924	broad.mit.edu	37	15	28446651	28446651	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28446651T>C	uc001zbj.2	-	48	7773	c.7667A>G	c.(7666-7668)GAT>GGT	p.D2556G	HERC2_uc001zbk.1_Missense_Mutation_p.D91G	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2556					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ACTCAAGAAATCAGCTCGTTT	0.358													24	61					0	0	1	0	0	
HERC2	8924	broad.mit.edu	37	15	28459021	28459021	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28459021C>T	uc001zbj.2	-	42	6759	c.6653G>A	c.(6652-6654)CGC>CAC	p.R2218H		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2218					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ACCGCCCAGGCGCAGGCGACC	0.582													14	34					0	0	1	0	0	
HERC2	8924	broad.mit.edu	37	15	28501325	28501325	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28501325C>T	uc001zbj.2	-	18	2762	c.2656G>A	c.(2656-2658)GCC>ACC	p.A886T	HERC2_uc001zbl.1_Missense_Mutation_p.A581T	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	886					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ACGGCCTGGGCGGCCGACTGC	0.701													11	22					0	0	1	0	0	
HERC2	8924	broad.mit.edu	37	15	28538116	28538116	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28538116C>A	uc001zbj.2	-	4	346	c.240G>T	c.(238-240)GAG>GAT	p.E80D	HERC2_uc001zbl.1_5'UTR	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	80					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CATCTTTTTTCTCTTTGTCAT	0.388													21	45					4.96729e-08	5.24652e-08	1	1	0	
WHAMML2	440253	broad.mit.edu	37	15	28986334	28986334	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28986334G>T	uc010azf.2	+	2		c.682G>T			WHAMML2_uc010uap.1_RNA|WHAMML2_uc010azg.1_RNA|WHAMML2_uc010azh.1_RNA|WHAMML2_uc001zci.1_RNA					Homo sapiens WAS protein homology region 2 domain containing 1-like 2, mRNA (cDNA clone IMAGE:5261987).												0						AGCCTACCAGGAATTAGTTAC	0.403													4	11					0.0215528	0.0216931	1	1	0	
WHAMML2	440253	broad.mit.edu	37	15	28999647	28999647	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:28999647G>A	uc010uap.1	+	8		c.1643G>A			WHAMML2_uc001zci.1_RNA|WHAMML2_uc010azi.1_RNA	NR_026589				Homo sapiens cDNA FLJ33935 fis, clone CTONG2017910.												0						GGCTCAGATTGCAACAGGCTG	0.393													30	77					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	15	29092258	29092258	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:29092258G>A	uc010uar.1	-	2	258	c.129C>T	c.(127-129)GGC>GGT	p.G43G						SubName: Full=cDNA FLJ59069, weakly similar to Golgin subfamily A member 6;																		CAGGGTTAGCGCCATGATTTA	0.542													9	7					0	0	1	0	0	
APBA2	321	broad.mit.edu	37	15	29406145	29406145	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:29406145G>A	uc001zck.2	+	13	2311	c.2104G>A	c.(2104-2106)GAG>AAG	p.E702K	APBA2_uc010uat.1_Missense_Mutation_p.E690K|APBA2_uc001zcl.2_Missense_Mutation_p.E690K	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	702	PDZ 2.				nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		CCGCATCATCGAGATCAACGG	0.602													28	60					0	0	1	0	0	
TJP1	7082	broad.mit.edu	37	15	30008950	30008950	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:30008950C>T	uc001zcr.2	-	23	4542	c.4067G>A	c.(4066-4068)CGA>CAA	p.R1356Q	TJP1_uc010azl.2_Missense_Mutation_p.R1344Q|TJP1_uc001zcq.2_Missense_Mutation_p.R1280Q|TJP1_uc001zcs.2_Missense_Mutation_p.R1276Q	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	1356					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		CAGCTGTTTTCGATAATATTC	0.453													20	66					0	0	1	0	0	
TJP1	7082	broad.mit.edu	37	15	30034875	30034875	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:30034875C>A	uc001zcr.2	-	9	1596	c.1121G>T	c.(1120-1122)AGA>ATA	p.R374I	TJP1_uc010azl.2_Missense_Mutation_p.R362I|TJP1_uc001zcq.2_Missense_Mutation_p.R378I|TJP1_uc001zcs.2_Missense_Mutation_p.R374I	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	374					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		TTTCTCATTTCTTTCAACTGT	0.378													42	80					9.85521e-28	1.19659e-27	1	1	0	
TRPM1	4308	broad.mit.edu	37	15	31294611	31294611	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:31294611C>T	uc001zfm.2	-	27	4354	c.4226G>A	c.(4225-4227)GGC>GAC	p.G1409D	TRPM1_uc010azy.2_Missense_Mutation_p.G1316D|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1409	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		GGAAATAGTGCCTTCTATATT	0.378													47	89					0	0	1	0	0	
TRPM1	4308	broad.mit.edu	37	15	31319267	31319267	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:31319267C>T	uc001zfm.2	-	25	3409	c.3281G>A	c.(3280-3282)CGA>CAA	p.R1094Q	TRPM1_uc010azy.2_Missense_Mutation_p.R1001Q|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	1094	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CAGCTGATATCGCTGGAACTT	0.393													28	59					0	0	1	0	0	
TRPM1	4308	broad.mit.edu	37	15	31339355	31339355	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:31339355T>G	uc001zfm.2	-	14	1785	c.1657A>C	c.(1657-1659)AAC>CAC	p.N553H	TRPM1_uc010azy.2_Missense_Mutation_p.N460H|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	553	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		GTCCGAAAGTTTTTCCGAGTG	0.522													11	98					0	0	1	0	0	
TRPM1	4308	broad.mit.edu	37	15	31352771	31352771	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:31352771G>T	uc001zfm.2	-	10	1301	c.1173C>A	c.(1171-1173)ATC>ATA	p.I391I	TRPM1_uc010azy.2_Silent_p.I298I|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	391	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CAAAGACAAAGATCTGGCTTC	0.468													13	25					5.50884e-06	5.70595e-06	1	1	0	
FMN1	342184	broad.mit.edu	37	15	33194156	33194156	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:33194156T>G	uc001zhf.3	-	9	2794	c.2794A>C	c.(2794-2796)ACC>CCC	p.T932P		NM_001103184	NP_001096654	Q68DA7	FMN1_HUMAN	formin 1	1155	FH2.				actin cytoskeleton organization	actin cytoskeleton|adherens junction|cytoplasm|nucleus	actin binding			ovary(1)	1		all_lung(180;1.14e-07)		all cancers(64;3.05e-15)|Epithelial(43;1.67e-10)|GBM - Glioblastoma multiforme(186;4.95e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0262)		TGCAAGGAGGTGATACCCTCA	0.383													18	48					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	33831637	33831637	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:33831637G>A	uc001zhi.2	+	6	590	c.520G>A	c.(520-522)GTC>ATC	p.V174I	RYR3_uc010bar.2_Missense_Mutation_p.V174I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	174	MIR 2.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CCTCATCCTCGTCAGCGTGTC	0.433													5	12					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	33905384	33905384	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:33905384G>A	uc001zhi.2	+	19	2235	c.2165G>A	c.(2164-2166)GGC>GAC	p.G722D	RYR3_uc010bar.2_Missense_Mutation_p.G722D	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	722	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCCTCACCAGGCCGGATACCC	0.597													6	13					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	33920748	33920748	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:33920748A>C	uc001zhi.2	+	21	2721	c.2651A>C	c.(2650-2652)AAA>ACA	p.K884T	RYR3_uc010bar.2_Missense_Mutation_p.K884T	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	884	4 X approximate repeats.|1.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GGAATGAATAAAATAGAACTT	0.473													21	42					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	34072456	34072456	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:34072456C>T	uc001zhi.2	+	65	9252	c.9182C>T	c.(9181-9183)GCC>GTC	p.A3061V	RYR3_uc010bar.2_Missense_Mutation_p.A3061V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3061	Helical; Name=M''; (Potential).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTGGCAGCTGCCATACCAGTG	0.567													13	29					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	34113011	34113011	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:34113011G>A	uc001zhi.2	+	78	10883	c.10813G>A	c.(10813-10815)GAA>AAA	p.E3605K	RYR3_uc010bar.2_Missense_Mutation_p.E3600K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3605					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AAAAACATTCGAAGTAAGTTC	0.433													5	11					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	34130137	34130137	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:34130137C>T	uc001zhi.2	+	89	12026	c.11956C>T	c.(11956-11958)CCA>TCA	p.P3986S	RYR3_uc010bar.2_Missense_Mutation_p.P3981S	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3986					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GTTCCATGAGCCAGCCAAGGA	0.453													41	105					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	34146651	34146651	+	Splice_Site	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:34146651G>A	uc001zhi.2	+	97	13930	c.13860_splice	c.e97+1	p.N4620_splice	RYR3_uc010bar.2_Splice_Site_p.N4615_splice	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3						cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TACTGACAACGTAAGTACTGC	0.403													3	5					0	0	1	0	0	
C15orf29	79768	broad.mit.edu	37	15	34445233	34445233	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:34445233G>A	uc001zhp.2	-	4	356	c.196C>T	c.(196-198)CGT>TGT	p.R66C	C15orf29_uc010ubz.1_5'UTR|C15orf29_uc010uca.1_Missense_Mutation_p.R66C	NM_024713	NP_078989	Q9H079	CO029_HUMAN	hypothetical protein LOC79768	66						nucleolus				ovary(1)	1		all_lung(180;1.86e-06)		all cancers(64;5.49e-18)|GBM - Glioblastoma multiforme(113;8.91e-07)|BRCA - Breast invasive adenocarcinoma(123;0.026)|Lung(196;0.229)		ATCACTTTACGAAGTTTATCT	0.348													45	86					0	0	1	0	0	
SLC12A6	9990	broad.mit.edu	37	15	34628879	34628879	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:34628879C>T	uc001zhw.2	-	1	167	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SLC12A6_uc001zhx.2_Missense_Mutation_p.M1I|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Intron|SLC12A6_uc001zib.2_Intron|SLC12A6_uc001zic.2_Missense_Mutation_p.M1I|SLC12A6_uc010bau.2_Missense_Mutation_p.M1I|SLC12A6_uc001zid.2_Intron	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	1	Cytoplasmic (Potential).				angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	CTGGAGGATGCATTTTGTTCT	0.433													19	43					0	0	1	0	0	
GOLGA8A	23015	broad.mit.edu	37	15	34678852	34678852	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:34678852G>A	uc001zii.2	-	3	368	c.259C>T	c.(259-261)CGA>TGA	p.R87*	GOLGA8A_uc001zih.2_5'Flank	NM_181077	NP_851422	A7E2F4	GOG8A_HUMAN	golgi autoantigen, golgin subfamily a, 8A	115	Potential.					Golgi cisterna membrane					0		all_lung(180;2.78e-08)		all cancers(64;8.27e-19)|GBM - Glioblastoma multiforme(113;6.98e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		TCATTCAGTCGACTGATTTTT	0.567													17	88					0	0	1	0	0	
AQR	9716	broad.mit.edu	37	15	35236561	35236561	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:35236561T>G	uc001ziv.2	-	6	580	c.399A>C	c.(397-399)GAA>GAC	p.E133D		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	133						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		CACCATCAGTTTCAGCTAATG	0.318													87	195					0	0	1	0	0	
CSNK1A1P	161635	broad.mit.edu	37	15	37110228	37110228	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:37110228T>G	uc001zjg.3	-	1		c.480A>C				NR_027320				Homo sapiens casein kinase 1, alpha 1 pseudogene, mRNA (cDNA clone IMAGE:5166482).												0						TCACCGTTGGTGATGCTGATC	0.502													22	20					0	0	1	0	0	
SPRED1	161742	broad.mit.edu	37	15	38617009	38617009	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:38617009A>C	uc001zka.3	+	4	757	c.422A>C	c.(421-423)CAA>CCA	p.Q141P		NM_152594	NP_689807	Q7Z699	SPRE1_HUMAN	sprouty-related protein 1 with EVH-1 domain	141					inactivation of MAPK activity|multicellular organismal development	caveola|nucleus	stem cell factor receptor binding			ovary(2)|lung(2)|skin(1)	5		all_cancers(109;4.88e-13)|all_epithelial(112;1.83e-11)|Lung NSC(122;2.21e-09)|all_lung(180;4.64e-08)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(113;2.41e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		GATGACTTACAAGTAAGTAAT	0.313									Legius_syndrome				12	19					0	0	1	0	0	
C15orf54	400360	broad.mit.edu	37	15	39544598	39544598	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:39544598T>C	uc001zkg.2	+	2	630	c.262T>C	c.(262-264)TCC>CCC	p.S88P		NM_207445	NP_997328	Q8N8G6	CO054_HUMAN	hypothetical protein LOC400360	88											0		all_cancers(109;5.39e-14)|all_epithelial(112;3.14e-12)|Lung NSC(122;9.74e-10)|all_lung(180;2.23e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;1.19e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0706)		CCAACAGATGTCCCTTTCAAA	0.433													53	96					0	0	1	0	0	
THBS1	7057	broad.mit.edu	37	15	39882122	39882122	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:39882122C>T	uc001zkh.2	+	13	2222	c.2043C>T	c.(2041-2043)GGC>GGT	p.G681G	THBS1_uc010bbi.2_Silent_p.G153G	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	681	EGF-like 3.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GCAAGCCTGGCTACGCTGGCA	0.592													14	30					0	0	1	0	0	
FSIP1	161835	broad.mit.edu	37	15	40057945	40057945	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:40057945C>A	uc001zki.2	-	4	531	c.313G>T	c.(313-315)GAA>TAA	p.E105*		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	105	Potential.									ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		AATTTGGGTTCATCTATATTG	0.254													5	29					0.00116845	0.00118508	1	1	0	
EIF2AK4	440275	broad.mit.edu	37	15	40280268	40280268	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:40280268C>T	uc001zkm.1	+	15	2538	c.2488C>T	c.(2488-2490)CGA>TGA	p.R830*	EIF2AK4_uc010bbj.1_Nonsense_Mutation_p.R531*	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	830	Protein kinase 2.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		GAGGCTTTTTCGAGAGATTCT	0.378													31	100					0	0	1	0	0	
BUB1B	701	broad.mit.edu	37	15	40462836	40462836	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:40462836A>C	uc001zkx.3	+	4	550	c.338A>C	c.(337-339)AAA>ACA	p.K113T		NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	113	BUB1 N-terminal.|Nuclear localization signal (Potential).				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		CAAGGAGAAAAACGATATTAT	0.363			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				22	60					0	0	1	0	0	
BUB1B	701	broad.mit.edu	37	15	40504751	40504751	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:40504751G>T	uc001zkx.3	+	19	2649	c.2437G>T	c.(2437-2439)GAA>TAA	p.E813*		NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	813	Protein kinase.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		CAAGTTAAAGGAACGTTTAAA	0.323			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				26	43					1.66031e-10	1.80435e-10	1	1	0	
PAK6	56924	broad.mit.edu	37	15	40564537	40564537	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:40564537C>T	uc010bbl.2	+	6	1411	c.971C>T	c.(970-972)TCG>TTG	p.S324L	PAK6_uc010bbm.2_Missense_Mutation_p.S324L|PAK6_uc001zky.3_Missense_Mutation_p.S324L|PAK6_uc010bbn.2_Missense_Mutation_p.S324L|PAK6_uc001zlb.2_Missense_Mutation_p.S324L	NM_001128628	NP_001122100	Q9NQU5	PAK6_HUMAN	p21-activated kinase 6	324	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(5)|large_intestine(1)|ovary(1)|skin(1)	8		all_cancers(109;1.13e-18)|all_epithelial(112;1.62e-15)|Lung NSC(122;5.67e-11)|all_lung(180;1.41e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0823)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.51e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0544)		CTGACCACTTCGGATACCAGC	0.697													34	69					0	0	1	0	0	
C15orf23	90417	broad.mit.edu	37	15	40684192	40684192	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:40684192G>A	uc001zll.2	+	8	905	c.790G>A	c.(790-792)GAA>AAA	p.E264K	C15orf23_uc010ucp.1_Missense_Mutation_p.E264K|C15orf23_uc001zlo.2_3'UTR|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	264	Potential.					nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GCTTTTTAACGAAACAGCCAA	0.403													49	107					0	0	1	0	0	
CASC5	57082	broad.mit.edu	37	15	40913959	40913959	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:40913959T>A	uc010bbs.1	+	11	1736	c.1575T>A	c.(1573-1575)TTT>TTA	p.F525L	CASC5_uc010ucq.1_Missense_Mutation_p.F349L|CASC5_uc001zme.2_Missense_Mutation_p.F499L|CASC5_uc010bbt.1_Missense_Mutation_p.F499L	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	525	Interaction with BUB1 and BUB1B.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		ATCAAATTTTTAAACAAGATC	0.368													25	53					0	0	1	0	0	
CASC5	57082	broad.mit.edu	37	15	40914552	40914552	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:40914552C>A	uc010bbs.1	+	11	2329	c.2168C>A	c.(2167-2169)TCT>TAT	p.S723Y	CASC5_uc010ucq.1_Missense_Mutation_p.S547Y|CASC5_uc001zme.2_Missense_Mutation_p.S697Y|CASC5_uc010bbt.1_Missense_Mutation_p.S697Y	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	723	Interaction with BUB1 and BUB1B.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		TCTTTGTTTTCTACCACAAAG	0.343													16	40					0.0242445	0.0243994	1	1	0	
CASC5	57082	broad.mit.edu	37	15	40916289	40916289	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:40916289A>G	uc010bbs.1	+	11	4066	c.3905A>G	c.(3904-3906)CAG>CGG	p.Q1302R	CASC5_uc010ucq.1_Missense_Mutation_p.Q1126R|CASC5_uc001zme.2_Missense_Mutation_p.Q1276R|CASC5_uc010bbt.1_Missense_Mutation_p.Q1276R	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	1302					acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		GAAAGCTGTCAGTTAAATAAT	0.363													38	98					0	0	1	0	0	
FAM82A2	55177	broad.mit.edu	37	15	41043667	41043667	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:41043667C>T	uc001zmo.1	-	4	625	c.481G>A	c.(481-483)GCC>ACC	p.A161T	FAM82A2_uc001zmp.1_Missense_Mutation_p.A161T|FAM82A2_uc001zmq.1_Missense_Mutation_p.A161T	NM_018145	NP_060615	Q96TC7	RMD3_HUMAN	family with sequence similarity 82, member A2	161					apoptosis|cell differentiation	integral to membrane|microtubule|mitochondrial membrane|nucleus|spindle pole	protein binding				0						CCCGAGGAGGCCGTGAAGTAG	0.557													61	115					0	0	1	0	0	
INO80	54617	broad.mit.edu	37	15	41387799	41387799	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:41387799C>T	uc001zni.2	-	4	594	c.381G>A	c.(379-381)AAG>AAA	p.K127K	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	127	Assembles INO80 complex module with putative regulatory components INO80E, INO80F, UCHL5, NFRKB, MCRS1 and IN80D.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						TATCTCTTACCTTTAGCCACT	0.308													26	41					0	0	1	0	0	
CHP	11261	broad.mit.edu	37	15	41554990	41554990	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:41554990T>G	uc001znl.2	+	4	402	c.258T>G	c.(256-258)ACT>ACG	p.T86T		NM_007236	NP_009167	Q99653	CHP1_HUMAN	calcium binding protein P22	86	EF-hand 2.				potassium ion transport|small GTPase mediated signal transduction		potassium channel regulator activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;5.87e-16)|Lung NSC(122;8.86e-12)|all_lung(180;2.47e-10)|Melanoma(134;0.0574)|Colorectal(260;0.0946)|Ovarian(310;0.143)		GBM - Glioblastoma multiforme(113;1.68e-06)|LUSC - Lung squamous cell carcinoma(244;0.008)|Lung(196;0.00802)|BRCA - Breast invasive adenocarcinoma(123;0.169)		TCATGCGAACTTTGGCTCATT	0.423													69	111					0	0	1	0	0	
LTK	4058	broad.mit.edu	37	15	41797252	41797252	+	Missense_Mutation	SNP	C	T	T	rs145997165		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:41797252C>T	uc001zoa.3	-	16	2114	c.1936G>A	c.(1936-1938)GCC>ACC	p.A646T	LTK_uc001zob.3_Missense_Mutation_p.A585T|LTK_uc010ucx.1_Missense_Mutation_p.A516T|LTK_uc010bcg.2_Missense_Mutation_p.A344T	NM_002344	NP_002335	P29376	LTK_HUMAN	leukocyte receptor tyrosine kinase isoform 1	646	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell proliferation|phosphatidylinositol 3-kinase cascade|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|central_nervous_system(1)	7		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;2.1e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		CAGTTCCGGGCGGCAATATCC	0.527										TSP Lung(18;0.14)			9	17					0	0	1	0	0	
MGA	23269	broad.mit.edu	37	15	42021440	42021440	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:42021440C>T	uc010ucy.1	+	11	3917	c.3736C>T	c.(3736-3738)CGA>TGA	p.R1246*	MGA_uc010ucz.1_Nonsense_Mutation_p.R1246*	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1246						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		AGTATATGAGCGAAAAAAAGA	0.408													13	29					0	0	1	0	0	
PLA2G4F	255189	broad.mit.edu	37	15	42442027	42442027	+	Missense_Mutation	SNP	G	A	A	rs144191503		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:42442027G>A	uc001zoz.2	-	11	1006	c.943C>T	c.(943-945)CGC>TGC	p.R315C	PLA2G4F_uc001zoy.2_5'Flank|PLA2G4F_uc010bcr.2_Missense_Mutation_p.R66C|PLA2G4F_uc001zpa.2_Missense_Mutation_p.R66C|PLA2G4F_uc010bcs.2_Missense_Mutation_p.R102C	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	315	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		AAGCCAAGGCGTAGGTCTAGG	0.637													18	46					0	0	1	0	0	
PLA2G4F	255189	broad.mit.edu	37	15	42442820	42442820	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:42442820G>A	uc001zoz.2	-	8	820	c.757C>T	c.(757-759)CTG>TTG	p.L253L	PLA2G4F_uc001zoy.2_5'Flank|PLA2G4F_uc010bcr.2_Silent_p.L4L|PLA2G4F_uc001zpa.2_Silent_p.L4L|PLA2G4F_uc010bcs.2_Silent_p.L40L	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	253					phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		ACAGCTGCCAGCAGCTCCATC	0.632													9	19					0	0	1	0	0	
CAPN3	825	broad.mit.edu	37	15	42691806	42691806	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:42691806G>A	uc001zpn.1	+	10	1616	c.1310G>A	c.(1309-1311)CGC>CAC	p.R437H	CAPN3_uc001zpk.1_Missense_Mutation_p.R210H|CAPN3_uc001zpl.1_Missense_Mutation_p.R350H|CAPN3_uc010udf.1_Missense_Mutation_p.R350H|CAPN3_uc010udg.1_Missense_Mutation_p.R302H|CAPN3_uc001zpo.1_Missense_Mutation_p.R437H|CAPN3_uc001zpp.1_Missense_Mutation_p.R389H|CAPN3_uc001zpq.1_5'Flank	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	437	Domain III.		R -> C (in LGMD2A).		muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		AACGAGGGCCGCTGGGTACGG	0.567													12	23					0	0	1	0	0	
TTBK2	146057	broad.mit.edu	37	15	43044235	43044235	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:43044235G>A	uc001zqo.2	-	14	3648	c.3209C>T	c.(3208-3210)TCG>TTG	p.S1070L	TTBK2_uc010bcy.2_Missense_Mutation_p.S1001L	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	1070					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		GAACTGAGACGAAGTTGAGCT	0.498													55	112					0	0	1	0	0	
TTBK2	146057	broad.mit.edu	37	15	43044613	43044613	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:43044613C>T	uc001zqo.2	-	14	3270	c.2831G>A	c.(2830-2832)CGA>CAA	p.R944Q	TTBK2_uc010bcy.2_Missense_Mutation_p.R875Q	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	944					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		AACAGGGATTCGGCTGTGTCT	0.433													41	99					0	0	1	0	0	
EPB42	2038	broad.mit.edu	37	15	43508531	43508531	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:43508531T>C	uc001zra.3	-	2	431	c.131A>G	c.(130-132)TAC>TGC	p.Y44C	EPB42_uc010bde.2_5'UTR|EPB42_uc001zrb.3_Missense_Mutation_p.Y74C|EPB42_uc010udm.1_Missense_Mutation_p.Y44C	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	44					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		AGCGCGGAAGTACAGGATGAT	0.582													30	52					0	0	1	0	0	
TGM7	116179	broad.mit.edu	37	15	43584953	43584953	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:43584953A>C	uc001zrf.1	-	3	398	c.393T>G	c.(391-393)ACT>ACG	p.T131T		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	131					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	CCAGCGGGTAAGTCACACTGT	0.483													73	125					0	0	1	0	0	
LCMT2	9836	broad.mit.edu	37	15	43620802	43620802	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:43620802A>C	uc001zrg.2	-	1	2090	c.1886T>G	c.(1885-1887)ATT>AGT	p.I629S	LCMT2_uc010udn.1_Missense_Mutation_p.I208S|ADAL_uc001zrh.2_5'Flank|ADAL_uc010udo.1_5'Flank	NM_014793	NP_055608	O60294	LCMT2_HUMAN	leucine carboxyl methyltransferase 2	629					tRNA processing		methyltransferase activity|protein binding				0		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.1e-07)	L-Leucine(DB00149)	TGTTGTGTCAATCTGATACTC	0.458													31	76					0	0	1	0	0	
CKMT1A	548596	broad.mit.edu	37	15	43988539	43988539	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:43988539G>T	uc001zsn.2	+	7	1246	c.854G>T	c.(853-855)AGA>ATA	p.R285I	CKMT1A_uc010uea.1_Missense_Mutation_p.R316I|CKMT1A_uc010ueb.1_RNA|CKMT1A_uc010bdo.2_Missense_Mutation_p.R126I|CKMT1A_uc001zso.3_Missense_Mutation_p.R285I	NM_001015001	NP_001015001	P12532	KCRU_HUMAN	creatine kinase, mitochondrial 1A precursor	285	Phosphagen kinase C-terminal.				creatine metabolic process	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)	Creatine(DB00148)	GTGTTTGAAAGATTCTGCCGA	0.433													23	94					1.15183e-24	1.38497e-24	1	1	0	
CTDSPL2	51496	broad.mit.edu	37	15	44811443	44811443	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:44811443C>A	uc001ztr.2	+	11	1605	c.1189C>A	c.(1189-1191)CTT>ATT	p.L397I	CTDSPL2_uc001zts.2_Missense_Mutation_p.L397I|CTDSPL2_uc001ztt.2_Missense_Mutation_p.L397I|CTDSPL2_uc010bdv.2_Missense_Mutation_p.L325I	NM_016396	NP_057480	Q05D32	CTSL2_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	397	FCP1 homology.						phosphoprotein phosphatase activity				0		all_cancers(109;4.36e-14)|all_epithelial(112;9.8e-12)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.0122)		all cancers(107;1.02e-20)|GBM - Glioblastoma multiforme(94;1.49e-06)|COAD - Colon adenocarcinoma(120;0.0857)|Colorectal(105;0.0905)		TGGAAGAGATCTTTCAAAAAC	0.308													27	41					2.65835e-16	3.05131e-16	1	1	0	
SPG11	80208	broad.mit.edu	37	15	44944095	44944095	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:44944095C>T	uc001ztx.2	-	6	1081	c.1050G>A	c.(1048-1050)AAG>AAA	p.K350K	SPG11_uc010ueh.1_Silent_p.K350K|SPG11_uc010uei.1_Silent_p.K350K|SPG11_uc001zua.1_Silent_p.K350K	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	350	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		GTTTGGAGTTCTTTATTGTTT	0.403													21	30					0	0	1	0	0	
TRIM69	140691	broad.mit.edu	37	15	45059668	45059668	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:45059668C>A	uc001zuf.2	+	8	2096	c.1201C>A	c.(1201-1203)CGG>AGG	p.R401R	TRIM69_uc001zui.1_Silent_p.R197R|TRIM69_uc010bdy.1_Silent_p.R180R|TRIM69_uc001zug.1_Silent_p.R401R|TRIM69_uc001zuh.1_Silent_p.R242R	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	401	B30.2/SPRY.				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		ATCCATCATTCGGAAGGGCAG	0.458													36	71					2.09667e-21	2.48674e-21	1	1	0	
SORD	6652	broad.mit.edu	37	15	45365719	45365719	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:45365719G>T	uc001zul.3	+	9	1206	c.1065G>T	c.(1063-1065)CAG>CAT	p.Q355H	SORD_uc001zum.3_3'UTR|SORD_uc010bdz.2_Missense_Mutation_p.Q276H	NM_003104	NP_003095	Q00796	DHSO_HUMAN	sorbitol dehydrogenase	355					fructose biosynthetic process|glucose metabolic process|L-xylitol catabolic process|sorbitol catabolic process|sperm motility	cilium|extracellular space|flagellum|membrane fraction|mitochondrial membrane|soluble fraction	L-iditol 2-dehydrogenase activity|NAD binding|sugar binding|zinc ion binding				0		all_cancers(109;3.43e-12)|all_epithelial(112;2.33e-10)|Lung NSC(122;6.01e-07)|all_lung(180;4.38e-06)|Melanoma(134;0.0122)		all cancers(107;1.6e-18)|GBM - Glioblastoma multiforme(94;4.95e-07)|COAD - Colon adenocarcinoma(120;0.0704)|Colorectal(133;0.0706)	NADH(DB00157)	CCAGTGACCAGAATCCCTGAT	0.498													17	34					6.38683e-12	7.03806e-12	1	1	0	
DUOX1	53905	broad.mit.edu	37	15	45428767	45428767	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:45428767C>T	uc001zus.1	+	10	1312	c.966C>T	c.(964-966)TTC>TTT	p.F322F	DUOX1_uc001zut.1_Silent_p.F322F|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	322	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		CCTCAGAGTTCGTGGCGGCCT	0.577													39	77					0	0	1	0	0	
DUOX1	53905	broad.mit.edu	37	15	45443388	45443388	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:45443388C>T	uc001zus.1	+	24	3302	c.2956C>T	c.(2956-2958)CTG>TTG	p.L986L	DUOX1_uc001zut.1_Silent_p.L986L|DUOX1_uc010bee.1_Silent_p.L366L|DUOX1_uc001zuu.2_Silent_p.L128L	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	986	Cytoplasmic (Potential).|Interaction with TXNDC11 (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		ACCTCAGAGACTGCAGTGCCC	0.537													46	75					0	0	1	0	0	
GATM	2628	broad.mit.edu	37	15	45656125	45656125	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:45656125G>A	uc001zvc.2	-	8	1461	c.1132C>T	c.(1132-1134)CCA>TCA	p.P378S	GATM_uc001zvb.2_Missense_Mutation_p.P249S|GATM_uc010uev.1_Missense_Mutation_p.P431S	NM_001482	NP_001473	P50440	GATM_HUMAN	L-arginine:glycine amidinotransferase precursor	378					creatine biosynthetic process	mitochondrial inner membrane|mitochondrial intermembrane space	glycine amidinotransferase activity|protein binding				0		all_cancers(109;1.25e-09)|all_epithelial(112;5.56e-08)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.87e-16)|GBM - Glioblastoma multiforme(94;1.97e-06)	Creatine(DB00148)|Glycine(DB00145)|L-Ornithine(DB00129)	TTTTGAATTGGAACTTCATTG	0.353													28	42					0	0	1	0	0	
SPATA5L1	79029	broad.mit.edu	37	15	45707949	45707949	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:45707949G>T	uc001zve.2	+	5	1918	c.1809G>T	c.(1807-1809)GAG>GAT	p.E603D	SPATA5L1_uc001zvf.2_RNA	NM_024063	NP_076968	Q9BVQ7	SPA5L_HUMAN	spermatogenesis associated 5-like 1	603						cytoplasm	ATP binding|nucleoside-triphosphatase activity			ovary(3)|skin(1)	4		Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;7.31e-17)|GBM - Glioblastoma multiforme(94;6.28e-07)		AGACAATAGAGAGAAGAGGAA	0.408													13	31					4.36969e-10	4.72811e-10	1	1	0	
SEMA6D	80031	broad.mit.edu	37	15	48053386	48053386	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:48053386G>A	uc010bek.2	+	5	674	c.314G>A	c.(313-315)CGA>CAA	p.R105Q	SEMA6D_uc001zvw.2_Missense_Mutation_p.R105Q|SEMA6D_uc001zvx.1_Missense_Mutation_p.R105Q|SEMA6D_uc001zvy.2_Missense_Mutation_p.R105Q|SEMA6D_uc001zvz.2_Missense_Mutation_p.R105Q|SEMA6D_uc001zwa.2_Missense_Mutation_p.R105Q|SEMA6D_uc001zwb.2_Missense_Mutation_p.R105Q|SEMA6D_uc001zwc.2_Missense_Mutation_p.R105Q	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	105	Sema.|Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		CAACAGGATCGAGAAAACTGT	0.408													19	44					0	0	1	0	0	
SLC12A1	6557	broad.mit.edu	37	15	48580336	48580336	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:48580336G>A	uc001zwn.3	+	22	2942	c.2726G>A	c.(2725-2727)GGC>GAC	p.G909D	SLC12A1_uc001zwq.3_Missense_Mutation_p.G680D|SLC12A1_uc001zwr.3_Missense_Mutation_p.G636D	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	909	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	CAAGAAAAAGGCACAATTGAT	0.378													11	9					0	0	1	0	0	
FBN1	2200	broad.mit.edu	37	15	48703309	48703309	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:48703309T>G	uc001zwx.1	-	66	8822	c.8494A>C	c.(8494-8496)AGT>CGT	p.S2832R	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2832					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GGAGTACTACTGATTTGTAAT	0.373													24	67					0	0	1	0	0	
FBN1	2200	broad.mit.edu	37	15	48703477	48703477	+	Nonsense_Mutation	SNP	G	A	A	rs137854466		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:48703477G>A	uc001zwx.1	-	66	8654	c.8326C>T	c.(8326-8328)CGA>TGA	p.R2776*	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2776					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TCTAGGATTCGAACCTTGTTA	0.413													51	95					0	0	1	0	0	
FBN1	2200	broad.mit.edu	37	15	48776091	48776091	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:48776091G>A	uc001zwx.1	-	31	4090	c.3762C>T	c.(3760-3762)TGC>TGT	p.C1254C		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1254	EGF-like 20; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GGATATTTGTGCACTGACCAC	0.403													22	55					0	0	1	0	0	
COPS2	9318	broad.mit.edu	37	15	49436464	49436464	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:49436464A>C	uc001zxf.2	-	3	285	c.206T>G	c.(205-207)TTT>TGT	p.F69C	COPS2_uc001zxh.2_Missense_Mutation_p.F69C|COPS2_uc010ufa.1_Intron	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	69					cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		CAGTGCTTTAAATCCCCATTC	0.294													22	52					0	0	1	0	0	
C15orf33	196951	broad.mit.edu	37	15	49663591	49663591	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:49663591C>T	uc001zxl.2	-	12	1312	c.1018G>A	c.(1018-1020)GAC>AAC	p.D340N		NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	340										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		ATATTGAAGTCGATACCTAAA	0.333													61	93					0	0	1	0	0	
FGF7	2252	broad.mit.edu	37	15	49716732	49716732	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:49716732G>A	uc001zxn.2	+	2	767	c.238G>A	c.(238-240)GAT>AAT	p.D80N	C15orf33_uc001zxl.2_Intron|C15orf33_uc001zxm.2_Intron	NM_002009	NP_002000	P21781	FGF7_HUMAN	fibroblast growth factor 7 precursor	80					actin cytoskeleton reorganization|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization at cell surface|secretion by lung epithelial cell involved in lung growth		chemoattractant activity|growth factor activity				0		all_lung(180;0.00391)		all cancers(107;3.61e-08)|GBM - Glioblastoma multiforme(94;4.06e-05)	Palifermin(DB00039)	CCTGAGGATCGATAAAAGAGG	0.403													26	47					0	0	1	0	0	
C15orf33	196951	broad.mit.edu	37	15	49869835	49869835	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:49869835C>A	uc001zxl.2	-	6	726	c.432G>T	c.(430-432)AAG>AAT	p.K144N	C15orf33_uc001zxm.2_Missense_Mutation_p.K144N	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	144										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		CCTCTATATTCTTCTCTGTCT	0.259													14	16					1.05317e-09	1.13491e-09	1	1	0	
SLC27A2	11001	broad.mit.edu	37	15	50489750	50489750	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:50489750T>C	uc001zxw.2	+	2	764	c.532T>C	c.(532-534)TCC>CCC	p.S178P	SLC27A2_uc010bes.2_Missense_Mutation_p.S178P|SLC27A2_uc001zxx.2_5'UTR	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	178	Lumenal (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		AGATGATGTGTCCATCTATTA	0.363													24	66					0	0	1	0	0	
USP50	373509	broad.mit.edu	37	15	50838687	50838687	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:50838687G>A	uc001zyq.3	-	1	216	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_203494	NP_987090	E9PP86	E9PP86_HUMAN	ubiquitin specific protease 50	12					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			lung(1)|breast(1)	2				all cancers(107;0.000519)|GBM - Glioblastoma multiforme(94;0.00288)		GGTAGATATCGAAGTCATCTG	0.468													40	71					0	0	1	0	0	
TRPM7	54822	broad.mit.edu	37	15	50853889	50853889	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:50853889G>A	uc001zyt.3	-	39	5848	c.5584C>T	c.(5584-5586)CGT>TGT	p.R1862C	TRPM7_uc001zyr.2_Missense_Mutation_p.R299C	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1862	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		AACATCAGACGAACAGAATTA	0.363													17	34					0	0	1	0	0	
TRPM7	54822	broad.mit.edu	37	15	50878618	50878618	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:50878618C>T	uc001zyt.3	-	28	4721	c.4457G>A	c.(4456-4458)AGA>AAA	p.R1486K	TRPM7_uc010bew.1_Missense_Mutation_p.R1486K	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1486	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		AATGGAAGTTCTGTGACAGTC	0.313													15	19					0	0	1	0	0	
TRPM7	54822	broad.mit.edu	37	15	50906354	50906354	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:50906354C>T	uc001zyt.3	-	14	1865	c.1601G>A	c.(1600-1602)CGA>CAA	p.R534Q	TRPM7_uc010bew.1_Missense_Mutation_p.R534Q|TRPM7_uc001zyu.2_Missense_Mutation_p.R92Q	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	534	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		ATATATTAATCGAAAACGTTT	0.323													28	62					0	0	1	0	0	
DMXL2	23312	broad.mit.edu	37	15	51755589	51755589	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:51755589C>A	uc002abf.2	-	33	8135	c.7910G>T	c.(7909-7911)AGA>ATA	p.R2637I	DMXL2_uc002abd.2_Missense_Mutation_p.R708I|DMXL2_uc010ufy.1_Missense_Mutation_p.R2638I|DMXL2_uc010bfa.2_Missense_Mutation_p.R2001I	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2637						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ACTCTGCTTTCTTTTCTTAGT	0.303													20	75					1.33834e-09	1.43956e-09	1	1	0	
DMXL2	23312	broad.mit.edu	37	15	51763435	51763435	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:51763435A>C	uc002abf.2	-	29	7599	c.7374T>G	c.(7372-7374)GAT>GAG	p.D2458E	DMXL2_uc002abd.2_Missense_Mutation_p.D529E|DMXL2_uc010ufy.1_Missense_Mutation_p.D2459E|DMXL2_uc010bfa.2_Missense_Mutation_p.D1822E	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2458						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CAACAAAATAATCCCACATAC	0.408													30	68					0	0	1	0	0	
DMXL2	23312	broad.mit.edu	37	15	51791197	51791197	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:51791197T>G	uc002abf.2	-	18	4449	c.4224A>C	c.(4222-4224)GAA>GAC	p.E1408D	DMXL2_uc010ufy.1_Missense_Mutation_p.E1408D|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1408						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CGGTGACTGTTTCCTTTGCTG	0.418													89	194					0	0	1	0	0	
DMXL2	23312	broad.mit.edu	37	15	51828437	51828437	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:51828437C>T	uc002abf.2	-	12	2465	c.2240G>A	c.(2239-2241)CGA>CAA	p.R747Q	DMXL2_uc010ufy.1_Missense_Mutation_p.R747Q|DMXL2_uc010bfa.2_Missense_Mutation_p.R747Q	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	747						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		AGAGTTAATTCGAGCCAATTC	0.408													76	136					0	0	1	0	0	
TMOD2	29767	broad.mit.edu	37	15	52069169	52069169	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:52069169C>T	uc002abk.2	+	5	668	c.447C>T	c.(445-447)TTC>TTT	p.F149F	TMOD2_uc002abl.3_Silent_p.F149F|TMOD2_uc010bfb.2_Silent_p.F105F	NM_014548	NP_055363	Q9NZR1	TMOD2_HUMAN	neuronal tropomodulin isoform a	149					nervous system development	cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(2)	2				all cancers(107;0.00435)		ATCCAAAGTTCGATGAAGAAA	0.413													21	42					0	0	1	0	0	
TMOD3	29766	broad.mit.edu	37	15	52161468	52161468	+	Missense_Mutation	SNP	A	G	G	rs151135583		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:52161468A>G	uc002abm.2	+	3	400	c.181A>G	c.(181-183)ACA>GCA	p.T61A		NM_014547	NP_055362	Q9NYL9	TMOD3_HUMAN	tropomodulin 3 (ubiquitous)	61						cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(1)	1				all cancers(107;0.00194)		AAAGTCCACCACAGGGCCATT	0.453													29	67					0	0	1	0	0	
MYO5C	55930	broad.mit.edu	37	15	52539151	52539151	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:52539151G>A	uc010bff.2	-	16	2079	c.1942C>T	c.(1942-1944)CGA>TGA	p.R648*	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	648	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TTGATGCATCGAACGTAGTGG	0.468													23	72					0	0	1	0	0	
WDR72	256764	broad.mit.edu	37	15	53991950	53991950	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:53991950T>C	uc002acj.2	-	13	1804	c.1762A>G	c.(1762-1764)ACA>GCA	p.T588A	WDR72_uc010bfi.1_Missense_Mutation_p.T588A	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	588	WD 8.									lung(1)|skin(1)	2				all cancers(107;0.0511)		AACTTACCTGTTTCAATTTCC	0.363													48	84					0	0	1	0	0	
UNC13C	440279	broad.mit.edu	37	15	54306969	54306969	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:54306969A>G	uc002ack.2	+	1	1869	c.1869A>G	c.(1867-1869)GAA>GAG	p.E623E		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	623					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AAAACACAGAAACTGTGGATA	0.468													38	93					0	0	1	0	0	
UNC13C	440279	broad.mit.edu	37	15	54307519	54307519	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:54307519G>A	uc002ack.2	+	1	2419	c.2419G>A	c.(2419-2421)GCC>ACC	p.A807T		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	807					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGCTAAATCAGCCTTGGAAGT	0.438													19	27					0	0	1	0	0	
UNC13C	440279	broad.mit.edu	37	15	54556537	54556537	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:54556537C>T	uc002ack.2	+	7	3620	c.3620C>T	c.(3619-3621)GCC>GTC	p.A1207V	UNC13C_uc002acl.2_Missense_Mutation_p.A37V	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1207	C2 1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ACAAAGGCGGCCAAACAGAGT	0.348													6	13					0	0	1	0	0	
UNC13C	440279	broad.mit.edu	37	15	54707232	54707232	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:54707232C>A	uc002ack.2	+	17	4900	c.4900C>A	c.(4900-4902)CTT>ATT	p.L1634I	UNC13C_uc002acl.2_Missense_Mutation_p.L464I	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1634					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TATGTGGACTCTTTTTGCTCT	0.323													11	30					3.07112e-06	3.18826e-06	1	1	0	
UNC13C	440279	broad.mit.edu	37	15	54914612	54914612	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:54914612T>C	uc002ack.2	+	29	6194	c.6194T>C	c.(6193-6195)GTA>GCA	p.V2065A	UNC13C_uc002acm.2_5'UTR	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2065	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AAAGTCACTGTAAAAGGTATA	0.403													20	43					0	0	1	0	0	
CCPG1	9236	broad.mit.edu	37	15	55651945	55651945	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:55651945C>T	uc002acv.1	-	8	2191	c.2026G>A	c.(2026-2028)GAA>AAA	p.E676K	CCPG1_uc002acy.2_Missense_Mutation_p.E676K|CCPG1_uc002acu.1_Missense_Mutation_p.E532K|CCPG1_uc002acw.1_Missense_Mutation_p.E401K|CCPG1_uc002acx.2_Intron|CCPG1_uc010bfk.1_Missense_Mutation_p.E676K|CCPG1_uc002acz.1_Missense_Mutation_p.E676K	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	676	Lumenal (Potential).				cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		TGATCAAGTTCGTTCCAGTGA	0.328													23	44					0	0	1	0	0	
DYX1C1	161582	broad.mit.edu	37	15	55759140	55759140	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:55759140G>T	uc002adc.2	-	5	993	c.625C>A	c.(625-627)CTT>ATT	p.L209I	CCPG1_uc002acy.2_5'UTR|DYX1C1_uc010ugh.1_RNA|DYX1C1_uc010ugi.1_Intron|DYX1C1_uc002adb.2_Missense_Mutation_p.L209I|DYX1C1_uc002add.2_Missense_Mutation_p.L209I	NM_130810	NP_570722	Q8WXU2	DYXC1_HUMAN	dyslexia susceptibility 1 candidate 1 isoform a	209					neuron migration|regulation of estrogen receptor signaling pathway|regulation of proteasomal protein catabolic process	cytoplasm|nucleus	estrogen receptor binding			skin(1)	1				all cancers(107;0.0118)|GBM - Glioblastoma multiforme(80;0.171)		TTTGGAGCAAGATTTCTAGAT	0.209													18	57					5.35267e-07	5.59727e-07	1	1	0	
PYGO1	26108	broad.mit.edu	37	15	55839078	55839078	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:55839078G>A	uc010bfl.1	-	3	459	c.403C>T	c.(403-405)CCT>TCT	p.P135S	PYGO1_uc002adf.1_Missense_Mutation_p.P135S	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	135	Pro-rich.				Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		ATGCCCAGAGGATTCTGAGGA	0.438													43	68					0	0	1	0	0	
PRTG	283659	broad.mit.edu	37	15	55930813	55930813	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:55930813G>A	uc002adg.2	-	14	2434	c.2386C>T	c.(2386-2388)CGA>TGA	p.R796*		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	796	Fibronectin type-III 4.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		ACATGTAATCGAACGGCAAAT	0.393													13	30					0	0	1	0	0	
PRTG	283659	broad.mit.edu	37	15	55965788	55965788	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:55965788G>A	uc002adg.2	-	10	1681	c.1633C>T	c.(1633-1635)CGG>TGG	p.R545W	PRTG_uc002adh.2_Missense_Mutation_p.R47W	NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	545	Fibronectin type-III 2.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TGGCCCCGCCGATATTTGGCT	0.498													38	103					0	0	1	0	0	
PRTG	283659	broad.mit.edu	37	15	55974623	55974623	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:55974623A>T	uc002adg.2	-	4	663	c.615T>A	c.(613-615)TGT>TGA	p.C205*		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	205	Ig-like 2.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TGGCAGCAATACAACGATAAT	0.423													33	55					0	0	1	0	0	
NEDD4	4734	broad.mit.edu	37	15	56132713	56132713	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:56132713A>C	uc002adj.2	-	17	3520	c.3220T>G	c.(3220-3222)TTT>GTT	p.F1074V	NEDD4_uc002adl.2_Missense_Mutation_p.F655V|NEDD4_uc002adi.2_Missense_Mutation_p.F1002V|NEDD4_uc010ugj.1_Missense_Mutation_p.F1058V|NEDD4_uc010bfm.2_Missense_Mutation_p.F1057V|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	1074	HECT.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		CGGATGAAAAAACCTTGCAAA	0.318													24	43					0	0	1	0	0	
NEDD4	4734	broad.mit.edu	37	15	56152638	56152638	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:56152638T>C	uc002adj.2	-	7	2484	c.2184A>G	c.(2182-2184)GGA>GGG	p.G728G	NEDD4_uc002adl.2_Silent_p.G309G|NEDD4_uc002adi.2_Silent_p.G656G|NEDD4_uc010ugj.1_Silent_p.G712G|NEDD4_uc010bfm.2_Silent_p.G711G|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	728	Mediates interaction with TNIK (By similarity).				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		CGGCTGAATTTCCAAAAATGG	0.418													25	59					0	0	1	0	0	
NEDD4	4734	broad.mit.edu	37	15	56208417	56208417	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:56208417T>G	uc002adj.2	-	1	913	c.613A>C	c.(613-615)AAC>CAC	p.N205H	NEDD4_uc002adl.2_Intron|NEDD4_uc002adi.2_Missense_Mutation_p.N205H|NEDD4_uc010ugj.1_Missense_Mutation_p.N205H|NEDD4_uc010bfm.2_Missense_Mutation_p.N205H|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	205	Ser-rich.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		GAAGGTAAGTTTCCACCCAAA	0.383													34	54					0	0	1	0	0	
RFX7	64864	broad.mit.edu	37	15	56388113	56388113	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:56388113G>A	uc010bfn.2	-	9	1813	c.1813C>T	c.(1813-1815)CGC>TGC	p.R605C	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.R419C	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	508					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						TCATTACAGCGACTTTTACAT	0.423													10	23					0	0	1	0	0	
ZNF280D	54816	broad.mit.edu	37	15	56981268	56981268	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:56981268G>T	uc002adu.2	-	9	968	c.751C>A	c.(751-753)CTT>ATT	p.L251I	ZNF280D_uc002adv.2_Missense_Mutation_p.L238I|ZNF280D_uc010bfq.2_Missense_Mutation_p.L251I|ZNF280D_uc002adw.1_Missense_Mutation_p.L279I|ZNF280D_uc010bfr.1_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	251					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		GGATCCAAAAGATTGAAATGA	0.284													18	65					2.4624e-09	2.64481e-09	1	1	0	
ZNF280D	54816	broad.mit.edu	37	15	56981585	56981585	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:56981585C>T	uc002adu.2	-	8	800	c.583G>A	c.(583-585)GAA>AAA	p.E195K	ZNF280D_uc002adv.2_Missense_Mutation_p.E182K|ZNF280D_uc010bfq.2_Missense_Mutation_p.E195K|ZNF280D_uc002adw.1_Missense_Mutation_p.E223K|ZNF280D_uc010bfr.1_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		GAAACACTTTCGCTGGGTTTA	0.343													26	34					0	0	1	0	0	
CGNL1	84952	broad.mit.edu	37	15	57730212	57730212	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:57730212C>T	uc002aeg.2	+	2	91	c.15C>T	c.(13-15)TTC>TTT	p.F5F	CGNL1_uc010bfw.2_Silent_p.F5F	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	5	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGCTGTATTTCGGTGAATATC	0.438													158	254					0	0	1	0	0	
ALDH1A2	8854	broad.mit.edu	37	15	58253409	58253409	+	Silent	SNP	G	A	A	rs147700854		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:58253409G>A	uc002aex.2	-	11	1393	c.1335C>T	c.(1333-1335)CTC>CTT	p.L445L	ALDH1A2_uc002aey.2_Silent_p.L407L|ALDH1A2_uc010ugv.1_Silent_p.L424L|ALDH1A2_uc010ugw.1_Silent_p.L416L|ALDH1A2_uc002aew.2_Silent_p.L349L	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	445					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	CAGCTGCTACGAGTCCAAAGT	0.408													20	51					0	0	1	0	0	
ALDH1A2	8854	broad.mit.edu	37	15	58284967	58284967	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:58284967G>A	uc002aex.2	-	7	792	c.734C>T	c.(733-735)ACG>ATG	p.T245M	ALDH1A2_uc002aey.2_Intron|ALDH1A2_uc010ugv.1_Missense_Mutation_p.T224M|ALDH1A2_uc010ugw.1_Missense_Mutation_p.T216M|ALDH1A2_uc002aew.2_Missense_Mutation_p.T149M	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	245					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	TGCCCCAGCCGTTGGCCCATA	0.488													36	83					0	0	1	0	0	
RNF111	54778	broad.mit.edu	37	15	59347967	59347967	+	Missense_Mutation	SNP	G	A	A	rs139679728		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:59347967G>A	uc002afv.2	+	4	1373	c.1094G>A	c.(1093-1095)CGC>CAC	p.R365H	RNF111_uc002afs.2_Missense_Mutation_p.R365H|RNF111_uc002aft.2_Missense_Mutation_p.R365H|RNF111_uc002afu.2_Missense_Mutation_p.R365H|RNF111_uc002afw.2_Missense_Mutation_p.R365H	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	365	Ser-rich.|Interaction with AXIN1.				multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		CCACGGAACCGCAGTAGGATT	0.478													14	28					0	0	1	0	0	
LDHAL6B	92483	broad.mit.edu	37	15	59499489	59499489	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:59499489G>A	uc002agb.2	+	1	448	c.350G>A	c.(349-351)GGC>GAC	p.G117D	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	117					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	CTTCAACATGGCAGCCCTTTC	0.428													36	106					0	0	1	0	0	
LDHAL6B	92483	broad.mit.edu	37	15	59499969	59499969	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:59499969A>G	uc002agb.2	+	1	928	c.830A>G	c.(829-831)AAA>AGA	p.K277R	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	277					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	GAGCAATGGAAAAATGTCCAC	0.418													31	44					0	0	1	0	0	
MYO1E	4643	broad.mit.edu	37	15	59501008	59501008	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:59501008C>T	uc002aga.2	-	14	1774	c.1402G>A	c.(1402-1404)GCC>ACC	p.A468T		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	468	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		TGCATCGTGGCGCACACGTCA	0.537													32	61					0	0	1	0	0	
FAM81A	145773	broad.mit.edu	37	15	59752247	59752247	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:59752247G>A	uc002agc.2	+	3	323	c.136G>A	c.(136-138)GCC>ACC	p.A46T	FAM81A_uc010uha.1_Missense_Mutation_p.A46T	NM_152450	NP_689663	Q8TBF8	FA81A_HUMAN	hypothetical protein LOC145773	46										ovary(1)	1						AACCACCGCCGCCCTCGTAGA	0.537													23	46					0	0	1	0	0	
RORA	6095	broad.mit.edu	37	15	60803545	60803545	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:60803545G>T	uc002agv.2	-	6	955	c.799C>A	c.(799-801)CTT>ATT	p.L267I	uc002ags.1_Intron|RORA_uc002agt.3_Missense_Mutation_p.L179I|RORA_uc002agw.2_Missense_Mutation_p.L259I|RORA_uc002agx.2_Missense_Mutation_p.L234I	NM_134260	NP_599022	P35398	RORA_HUMAN	RAR-related orphan receptor A isoform b	267	Hinge.				positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						TTGATATCAAGACCTGACTGG	0.522													35	53					6.29468e-14	7.06965e-14	1	1	0	
VPS13C	54832	broad.mit.edu	37	15	62146720	62146720	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:62146720C>T	uc002agz.2	-	85	11272	c.11198G>A	c.(11197-11199)AGA>AAA	p.R3733K	VPS13C_uc002aha.2_Missense_Mutation_p.R3690K	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3733					protein localization					ovary(2)	2						TTGCTGCTGTCTCGTTGACTG	0.408													71	141					0	0	1	0	0	
VPS13C	54832	broad.mit.edu	37	15	62155716	62155716	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:62155716T>G	uc002agz.2	-	82	10949	c.10875A>C	c.(10873-10875)AAA>AAC	p.K3625N	VPS13C_uc002aha.2_Missense_Mutation_p.K3582N	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3625					protein localization					ovary(2)	2						CTTCCAACTTTTTGATATGAT	0.343													25	54					0	0	1	0	0	
VPS13C	54832	broad.mit.edu	37	15	62202485	62202485	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:62202485T>G	uc002agz.2	-	64	8809	c.8735A>C	c.(8734-8736)GAA>GCA	p.E2912A	VPS13C_uc002aha.2_Missense_Mutation_p.E2869A|VPS13C_uc002ahb.1_Missense_Mutation_p.E2912A|VPS13C_uc002ahc.1_Missense_Mutation_p.E2869A|VPS13C_uc002ahd.1_Missense_Mutation_p.E289A	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2912					protein localization					ovary(2)	2						TGACAAACTTTCTGGCCAAAA	0.333													21	49					0	0	1	0	0	
VPS13C	54832	broad.mit.edu	37	15	62214690	62214690	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:62214690C>T	uc002agz.2	-	54	6955	c.6881G>A	c.(6880-6882)CGA>CAA	p.R2294Q	VPS13C_uc002aha.2_Missense_Mutation_p.R2251Q|VPS13C_uc002ahb.1_Missense_Mutation_p.R2294Q|VPS13C_uc002ahc.1_Missense_Mutation_p.R2251Q	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2294					protein localization					ovary(2)	2						AGGTACAGTTCGATGTCCAAG	0.393													68	141					0	0	1	0	0	
VPS13C	54832	broad.mit.edu	37	15	62243142	62243142	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:62243142A>G	uc002agz.2	-	40	4610	c.4536_splice	c.e40+1	p.K1512_splice	VPS13C_uc002aha.2_Splice_Site_p.K1469_splice|VPS13C_uc002ahb.1_Splice_Site_p.K1512_splice|VPS13C_uc002ahc.1_Splice_Site_p.K1469_splice	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A						protein localization					ovary(2)	2						GAAACTAGTTACCTTTGTCAG	0.303													16	23					0	0	1	0	0	
VPS13C	54832	broad.mit.edu	37	15	62325718	62325718	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:62325718C>A	uc002agz.2	-	5	381	c.307G>T	c.(307-309)GAA>TAA	p.E103*	VPS13C_uc002aha.2_Nonsense_Mutation_p.E103*|VPS13C_uc002ahb.1_Nonsense_Mutation_p.E103*|VPS13C_uc002ahc.1_Nonsense_Mutation_p.E103*	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	103					protein localization					ovary(2)	2						GATTTTTCTTCTTTTACAGCA	0.299													11	18					0.00010058	0.000102942	1	1	0	
VPS13C	54832	broad.mit.edu	37	15	62327210	62327210	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:62327210C>T	uc002agz.2	-	4	303	c.229G>A	c.(229-231)GAA>AAA	p.E77K	VPS13C_uc002aha.2_Missense_Mutation_p.E77K|VPS13C_uc002ahb.1_Missense_Mutation_p.E77K|VPS13C_uc002ahc.1_Missense_Mutation_p.E77K	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	77					protein localization					ovary(2)	2						ACAACTGCTTCTCCATAAAGG	0.328													30	79					0	0	1	0	0	
TLN2	83660	broad.mit.edu	37	15	63029190	63029190	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:63029190C>T	uc002alb.3	+	26	3472	c.3472C>T	c.(3472-3474)CGA>TGA	p.R1158*		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1158	Ala-rich.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						AGATTCTGCTCGAGACGTGAT	0.612													14	30					0	0	1	0	0	
TPM1	7168	broad.mit.edu	37	15	63353934	63353934	+	Nonsense_Mutation	SNP	G	T	T	rs1131003		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:63353934G>T	uc002alg.2	+	6	777	c.586G>T	c.(586-588)GAA>TAA	p.E196*	TPM1_uc002alh.2_Intron|TPM1_uc010bgn.2_Intron|TPM1_uc002ali.2_Nonsense_Mutation_p.E196*|TPM1_uc002alj.2_Nonsense_Mutation_p.E196*|TPM1_uc002alk.2_Intron|TPM1_uc002all.2_Intron|TPM1_uc002alm.2_Nonsense_Mutation_p.E238*|TPM1_uc010uie.1_Nonsense_Mutation_p.E196*|TPM1_uc002alp.2_Nonsense_Mutation_p.E196*|TPM1_uc010uif.1_Intron|TPM1_uc002alr.2_Intron|TPM1_uc002als.2_Nonsense_Mutation_p.E160*|TPM1_uc010uig.1_Nonsense_Mutation_p.E160*|TPM1_uc002alt.2_Intron|TPM1_uc010bgp.2_Intron	NM_001018005	NP_001018005	P09493	TPM1_HUMAN	tropomyosin 1 alpha chain isoform 1	196	By similarity.				cardiac muscle contraction|cellular component movement|cellular response to reactive oxygen species|muscle filament sliding|negative regulation of cell migration|positive regulation of ATPase activity|positive regulation of cell adhesion|positive regulation of heart rate by epinephrine|positive regulation of stress fiber assembly|regulation of muscle contraction|ruffle organization|sarcomere organization|ventricular cardiac muscle tissue morphogenesis|wound healing	bleb|cytosol|muscle thin filament tropomyosin|ruffle membrane|stress fiber	actin binding|structural constituent of cytoskeleton|structural constituent of muscle				0						GCTTGAAGAAGAATTGAAAAC	0.493													20	43					3.62473e-10	3.92412e-10	1	1	0	
APH1B	83464	broad.mit.edu	37	15	63571506	63571506	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:63571506G>A	uc002ama.2	+	2	334	c.260G>A	c.(259-261)CGA>CAA	p.R87Q	APH1B_uc002amb.2_Missense_Mutation_p.R87Q|APH1B_uc010bgq.2_Missense_Mutation_p.R33Q|APH1B_uc010bgr.2_Missense_Mutation_p.R33Q	NM_031301	NP_112591	Q8WW43	APH1B_HUMAN	presenilin stabilization factor-like isoform 1	87	Helical; Name=3; (Potential).				apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	integral to membrane|plasma membrane|transport vesicle	peptidase activity|protein binding				0						GAAATGTTCCGATTTGCATAT	0.338													23	56					0	0	1	0	0	
HERC1	8925	broad.mit.edu	37	15	63967065	63967065	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:63967065C>T	uc002amp.2	-	38	7470	c.7322G>A	c.(7321-7323)CGA>CAA	p.R2441Q		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2441					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TAGGCCTGTTCGCATATCTAA	0.428													51	94					0	0	1	0	0	
HERC1	8925	broad.mit.edu	37	15	63986349	63986349	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:63986349C>T	uc002amp.2	-	30	5636	c.5488G>A	c.(5488-5490)GCT>ACT	p.A1830T		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1830					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						AGTTTATCAGCATAGGTCCTA	0.388													7	14					0	0	1	0	0	
HERC1	8925	broad.mit.edu	37	15	64010809	64010809	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:64010809T>G	uc002amp.2	-	21	4090	c.3942A>C	c.(3940-3942)GAA>GAC	p.E1314D	HERC1_uc010uil.1_Intron	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1314					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TTTGAATAAGTTCAAGGTTCT	0.363													5	10					0	0	1	0	0	
TRIP4	9325	broad.mit.edu	37	15	64687596	64687596	+	Splice_Site	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:64687596G>T	uc002anm.2	+	3	315	c.272_splice	c.e3-1	p.E91_splice		NM_016213	NP_057297	Q15650	TRIP4_HUMAN	thyroid hormone receptor interactor 4						positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	ligand-dependent nuclear receptor binding|transcription coactivator activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3						TATCTTTAAAGAAATTTTAGA	0.368													17	23					6.94344e-10	7.49515e-10	1	1	0	
ZNF609	23060	broad.mit.edu	37	15	64966811	64966811	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:64966811A>C	uc002ann.2	+	4	1758	c.1758A>C	c.(1756-1758)AAA>AAC	p.K586N		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	586						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						TCAGCACAAAAGGCCTCTGTA	0.502													34	60					0	0	1	0	0	
ANKDD1A	348094	broad.mit.edu	37	15	65223053	65223053	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65223053C>T	uc002aoa.2	+	7	633	c.604C>T	c.(604-606)CGG>TGG	p.R202W	ANKDD1A_uc002anx.1_Missense_Mutation_p.R198W|ANKDD1A_uc002any.2_Missense_Mutation_p.R111W|ANKDD1A_uc002anz.2_Missense_Mutation_p.R111W|ANKDD1A_uc002aob.2_Missense_Mutation_p.R67W|ANKDD1A_uc002aoc.2_RNA|ANKDD1A_uc010bha.2_Missense_Mutation_p.R111W	NM_182703	NP_874362	Q495B1	AKD1A_HUMAN	ankyrin repeat and death domain containing 1A	202	ANK 6.				signal transduction					ovary(1)	1						GGCTGCTGGTCGGGGCCATAT	0.602													14	19					0	0	1	0	0	
ANKDD1A	348094	broad.mit.edu	37	15	65226337	65226337	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65226337A>C	uc002aoa.2	+	9	799	c.770A>C	c.(769-771)AAA>ACA	p.K257T	ANKDD1A_uc002aoc.2_RNA|ANKDD1A_uc010bha.2_Missense_Mutation_p.K166T	NM_182703	NP_874362	Q495B1	AKD1A_HUMAN	ankyrin repeat and death domain containing 1A	257	ANK 8.				signal transduction					ovary(1)	1						TCCTTCTAGAAAAACCTAAGC	0.408													28	71					0	0	1	0	0	
SPG21	51324	broad.mit.edu	37	15	65268842	65268842	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65268842T>G	uc002aod.2	-	4	370	c.277A>C	c.(277-279)AAA>CAA	p.K93Q	SPG21_uc002aoe.2_Missense_Mutation_p.K93Q|SPG21_uc010bhb.2_Intron|SPG21_uc010bhc.2_5'UTR	NM_001127889	NP_001121361	Q9NZD8	SPG21_HUMAN	spastic paraplegia 21 isoform a	93					cell death	cytosol|endosome membrane|trans-Golgi network transport vesicle	CD4 receptor binding				0						TCTAAAAGTTTTCTGAATCCA	0.219													26	38					0	0	1	0	0	
CLPX	10845	broad.mit.edu	37	15	65450097	65450097	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65450097T>G	uc002aom.2	-	8	1116	c.1044A>C	c.(1042-1044)GAA>GAC	p.E348D	CLPX_uc010uiu.1_RNA|CLPX_uc010bhg.1_Missense_Mutation_p.E348D	NM_006660	NP_006651	O76031	CLPX_HUMAN	ClpX caseinolytic protease X homolog precursor	348					protein folding|proteolysis involved in cellular protein catabolic process	mitochondrial endopeptidase Clp complex|mitochondrial inner membrane|mitochondrial nucleoid	ATP binding|ATPase activity|metal ion binding|peptidase activator activity|unfolded protein binding				0						GTTGTGCTTTTTCCACATTAT	0.363													40	84					0	0	1	0	0	
CILP	8483	broad.mit.edu	37	15	65489827	65489827	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65489827C>A	uc002aon.2	-	9	2978	c.2797G>T	c.(2797-2799)GAC>TAC	p.D933Y		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	933					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CTCATAGGGTCATCTTCGTTG	0.537													33	92					1.04352e-10	1.13571e-10	1	1	0	
CILP	8483	broad.mit.edu	37	15	65490661	65490661	+	Missense_Mutation	SNP	G	A	A	rs142003410	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65490661G>A	uc002aon.2	-	9	2144	c.1963C>T	c.(1963-1965)CGG>TGG	p.R655W		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	655					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CCATACGTCCGAAGGGGGAAA	0.532													39	105					0	0	1	0	0	
DENND4A	10260	broad.mit.edu	37	15	65962360	65962360	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65962360C>T	uc002aph.2	-	25	4877	c.4499G>A	c.(4498-4500)CGA>CAA	p.R1500Q	DENND4A_uc002api.2_Missense_Mutation_p.R1543Q	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1500					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						CCTTCCAGGTCGTCTTAAATC	0.353													7	30					0	0	1	0	0	
DENND4A	10260	broad.mit.edu	37	15	65962413	65962413	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65962413G>A	uc002aph.2	-	25	4824	c.4446C>T	c.(4444-4446)TTC>TTT	p.F1482F	DENND4A_uc002api.2_Silent_p.F1525F	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1482					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TATTGCCACAGAATGGGCATG	0.383													9	19					0	0	1	0	0	
DENND4A	10260	broad.mit.edu	37	15	65968830	65968830	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65968830C>A	uc002aph.2	-	23	4568	c.4190G>T	c.(4189-4191)AGA>ATA	p.R1397I	DENND4A_uc002api.2_Missense_Mutation_p.R1440I	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1397					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GAGATCAATTCTCTTAGTCCC	0.418													11	28					2.27111e-07	2.38128e-07	1	1	0	
DENND4A	10260	broad.mit.edu	37	15	65983414	65983414	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:65983414T>G	uc002aph.2	-	22	3764	c.3386A>C	c.(3385-3387)GAA>GCA	p.E1129A	DENND4A_uc002api.2_Missense_Mutation_p.E1172A|DENND4A_uc002apj.3_Missense_Mutation_p.E1129A	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	1129					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TACATCTGTTTCACTGTCTAA	0.353													13	18					0	0	1	0	0	
DENND4A	10260	broad.mit.edu	37	15	66044740	66044740	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:66044740C>T	uc002aph.2	-	4	916	c.538G>A	c.(538-540)GAC>AAC	p.D180N	DENND4A_uc002api.2_Missense_Mutation_p.D180N|DENND4A_uc002apj.3_Missense_Mutation_p.D180N|DENND4A_uc010ujj.1_Missense_Mutation_p.D180N	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	180	MABP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						AGATTCTTGTCGACTTTGCAG	0.358													21	42					0	0	1	0	0	
MEGF11	84465	broad.mit.edu	37	15	66416290	66416290	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:66416290G>T	uc002apm.2	-	3	288	c.147C>A	c.(145-147)ATC>ATA	p.I49I	MEGF11_uc002apl.2_Missense_Mutation_p.S8Y|MEGF11_uc002apn.1_Silent_p.I49I	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	49	EMI.					basolateral plasma membrane|integral to membrane				pancreas(1)	1						GTGTGTAATAGATCTGATCGA	0.527													19	63					1.64113e-05	1.69216e-05	1	1	0	
ZWILCH	55055	broad.mit.edu	37	15	66811286	66811286	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:66811286T>G	uc002aqb.2	+	5	636	c.390T>G	c.(388-390)GTT>GTG	p.V130V	RPL4_uc002apx.2_Intron|ZWILCH_uc010bhu.1_Silent_p.V16V|ZWILCH_uc002aqa.2_Silent_p.V16V|ZWILCH_uc010bhv.2_Silent_p.V16V	NM_017975	NP_060445	Q9H900	ZWILC_HUMAN	Zwilch	130					cell division|mitotic cell cycle checkpoint|mitotic prometaphase	condensed chromosome kinetochore|cytosol	protein binding			ovary(1)	1						ATCTGCCAGTTACTGCCCTTC	0.408													6	88					0	0	1	0	0	
LCTL	197021	broad.mit.edu	37	15	66850086	66850086	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:66850086T>C	uc002aqc.2	-	8	1028	c.896A>G	c.(895-897)TAC>TGC	p.Y299C	LCTL_uc002aqd.3_Missense_Mutation_p.Y126C|LCTL_uc010bhw.2_5'UTR	NM_207338	NP_997221	Q6UWM7	LCTL_HUMAN	lactase-like precursor	299	Extracellular (Potential).				carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(2)	2						GACTTGGGGGTAGTCACCGGC	0.493													68	115					0	0	1	0	0	
IQCH	64799	broad.mit.edu	37	15	67629323	67629323	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:67629323C>T	uc002aqo.1	+	5	445	c.398C>T	c.(397-399)TCG>TTG	p.S133L	IQCH_uc010ujv.1_Intron|IQCH_uc002aqn.1_Intron|IQCH_uc002aqq.1_Intron|IQCH_uc002aqp.1_Intron	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	133										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		ATAAAGGTTTCGAAGTTAATC	0.343													16	46					0	0	1	0	0	
FEM1B	10116	broad.mit.edu	37	15	68583466	68583466	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:68583466A>C	uc002arg.2	+	2	2385	c.1770A>C	c.(1768-1770)AAA>AAC	p.K590N	FEM1B_uc002arh.2_Missense_Mutation_p.K510N	NM_015322	NP_056137	Q9UK73	FEM1B_HUMAN	fem-1 homolog b	590					apoptosis|induction of apoptosis|regulation of DNA damage checkpoint|regulation of ubiquitin-protein ligase activity	cytoplasm|nucleus	death receptor binding|ubiquitin-protein ligase activity				0						TACTGCTTAAAACTCAAATGA	0.448													13	39					0	0	1	0	0	
NOX5	79400	broad.mit.edu	37	15	69339194	69339194	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:69339194C>A	uc002ars.1	+	11	1700	c.1680C>A	c.(1678-1680)TTC>TTA	p.F560L	NOX5_uc002arp.1_Missense_Mutation_p.F542L|NOX5_uc002arq.1_Missense_Mutation_p.F514L|NOX5_uc010bid.1_Missense_Mutation_p.F525L|NOX5_uc002arr.1_Missense_Mutation_p.F532L|NOX5_uc010bie.1_Missense_Mutation_p.F360L|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	560	FAD-binding FR-type.|Cytoplasmic (Potential).|C-terminal catalytic region.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						AACACAAATTCTGTAACATCA	0.473													22	61					1.28384e-07	1.34871e-07	1	1	0	
TLE3	7090	broad.mit.edu	37	15	70344723	70344723	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:70344723G>A	uc002asm.2	-	18	3243	c.2124C>T	c.(2122-2124)TTC>TTT	p.F708F	TLE3_uc002ask.2_Silent_p.F635F|TLE3_uc002asl.2_Silent_p.F708F|TLE3_uc010ukd.1_Silent_p.F698F|TLE3_uc010bik.1_Silent_p.F289F|TLE3_uc010bil.1_Silent_p.F705F|TLE3_uc002asn.2_Silent_p.F696F|TLE3_uc002asp.2_Silent_p.F700F|TLE3_uc002aso.2_Silent_p.F703F	NM_005078	NP_005069	Q04726	TLE3_HUMAN	transducin-like enhancer protein 3 isoform a	708	WD 6.				organ morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|protein binding			lung(2)	2						CGCAGTAGGCGAACTTGAGGG	0.632													15	44					0	0	1	0	0	
UACA	55075	broad.mit.edu	37	15	70960067	70960067	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:70960067C>T	uc002asr.2	-	16	3060	c.2956G>A	c.(2956-2958)GCC>ACC	p.A986T	UACA_uc010uke.1_Missense_Mutation_p.A877T|UACA_uc002asq.2_Missense_Mutation_p.A973T|UACA_uc010bin.1_Missense_Mutation_p.A961T	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	986	Potential.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						ACAATTGGGGCGTATTTTACC	0.408													35	113					0	0	1	0	0	
UACA	55075	broad.mit.edu	37	15	70960325	70960325	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:70960325T>C	uc002asr.2	-	16	2802	c.2698A>G	c.(2698-2700)ATA>GTA	p.I900V	UACA_uc010uke.1_Missense_Mutation_p.I791V|UACA_uc002asq.2_Missense_Mutation_p.I887V|UACA_uc010bin.1_Missense_Mutation_p.I875V	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	900	Potential.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						TTATCTTTTATTTTTACAAAT	0.323													22	28					0	0	1	0	0	
PKM2	5315	broad.mit.edu	37	15	72492905	72492905	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:72492905G>A	uc002atx.1	-	10	1640	c.1399C>T	c.(1399-1401)CGT>TGT	p.R467C	GRAMD2_uc002atq.2_5'Flank|GRAMD2_uc010bis.2_5'Flank|PKM2_uc002atr.1_5'UTR|PKM2_uc002ats.1_Missense_Mutation_p.R134C|PKM2_uc002att.1_Missense_Mutation_p.R233C|PKM2_uc002atu.1_Missense_Mutation_p.R233C|PKM2_uc010bit.1_Missense_Mutation_p.R472C|PKM2_uc010uki.1_Missense_Mutation_p.R541C|PKM2_uc002atv.1_Missense_Mutation_p.R502C|PKM2_uc002atw.1_Missense_Mutation_p.R467C|PKM2_uc002aty.1_Missense_Mutation_p.R467C|PKM2_uc010ukj.1_Missense_Mutation_p.R452C|PKM2_uc010ukk.1_Missense_Mutation_p.R393C|PKM2_uc010biu.1_Missense_Mutation_p.R488C	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	467	Interaction with POU5F1.				glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	AAGATGCCACGGTACAGGTGG	0.617													26	62					0	0	1	0	0	
PKM2	5315	broad.mit.edu	37	15	72511433	72511433	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:72511433C>T	uc002atx.1	-	2	247	c.6G>A	c.(4-6)TCG>TCA	p.S2S	PKM2_uc010bit.1_Silent_p.S7S|PKM2_uc010uki.1_Silent_p.S76S|PKM2_uc002atv.1_Silent_p.S37S|PKM2_uc002atw.1_Silent_p.S2S|PKM2_uc002aty.1_Silent_p.S2S|PKM2_uc010ukj.1_Missense_Mutation_p.R18Q|PKM2_uc010ukk.1_Silent_p.S2S|PKM2_uc010biu.1_Silent_p.S23S|PKM2_uc002atz.1_RNA	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	2					glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	TATGGGGCTTCGACATGGCTG	0.532													38	90					0	0	1	0	0	
BBS4	585	broad.mit.edu	37	15	72987519	72987519	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:72987519G>T	uc002avb.2	+	2	69	c.26G>T	c.(25-27)AGA>ATA	p.R9I	BBS4_uc010ukv.1_5'UTR|BBS4_uc002avc.2_Intron|BBS4_uc002avd.2_Missense_Mutation_p.R17I	NM_033028	NP_149017	Q96RK4	BBS4_HUMAN	Bardet-Biedl syndrome 4	9	Required for localization to centrosomes.				adult behavior|brain morphogenesis|cell cycle cytokinesis|centrosome organization|cerebral cortex development|convergent extension involved in gastrulation|dendrite development|fat cell differentiation|heart looping|hippocampus development|intracellular transport|maintenance of protein location in nucleus|melanosome transport|microtubule anchoring at centrosome|neural tube closure|nonmotile primary cilium assembly|photoreceptor cell maintenance|pigment granule aggregation in cell center|positive regulation of flagellum assembly|regulation of cilium beat frequency involved in ciliary motility|regulation of cytokinesis|regulation of lipid metabolic process|retina homeostasis|retinal rod cell development|sensory perception of smell|sensory processing|spermatid development|striatum development	BBSome|centriolar satellite|centriole|cilium membrane|microtubule basal body|motile cilium|nonmotile primary cilium|nucleus|pericentriolar material	alpha-tubulin binding|beta-tubulin binding|dynactin binding|microtubule motor activity				0						TCATTTCAGAGAACTCAATTT	0.353									Bardet-Biedl_syndrome				16	58					1.15088e-07	1.20949e-07	1	1	0	
NPTN	27020	broad.mit.edu	37	15	73866030	73866030	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:73866030C>T	uc002avs.2	-	5	1010	c.813G>A	c.(811-813)TGG>TGA	p.W271*	NPTN_uc010bjc.2_Nonsense_Mutation_p.W271*|NPTN_uc002avt.2_Nonsense_Mutation_p.W155*|NPTN_uc002avr.2_Nonsense_Mutation_p.W155*|NPTN_uc010ula.1_Nonsense_Mutation_p.W66*	NM_012428	NP_036560	Q9Y639	NPTN_HUMAN	neuroplastin isoform b precursor	271	Ig-like 3.|Extracellular (Potential).				elevation of cytosolic calcium ion concentration|homophilic cell adhesion|long-term synaptic potentiation|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of long-term neuronal synaptic plasticity|positive regulation of neuron projection development|positive regulation of protein phosphorylation	integral to membrane|plasma membrane|presynaptic membrane	cell adhesion molecule binding|type 1 fibroblast growth factor receptor binding				0						CCTTCTTGCGCCATATCCAGT	0.552													29	76					0	0	1	0	0	
C15orf59	388135	broad.mit.edu	37	15	74032415	74032415	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:74032415C>T	uc002avy.2	-	2	1070	c.725G>A	c.(724-726)CGC>CAC	p.R242H		NM_001039614	NP_001034703	Q2T9L4	CO059_HUMAN	hypothetical protein LOC388135	242										pancreas(1)	1						CAGTGGAGAGCGCCGTGACTT	0.572													23	41					0	0	1	0	0	
LOXL1	4016	broad.mit.edu	37	15	74241881	74241881	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:74241881C>T	uc002awc.1	+	6	2020	c.1684C>T	c.(1684-1686)CGC>TGC	p.R562C	LOXL1_uc002awd.1_RNA	NM_005576	NP_005567	Q08397	LOXL1_HUMAN	lysyl oxidase-like 1 preproprotein	562	Lysyl-oxidase like.				protein deamination	extracellular space	copper ion binding				0						CTACACAGGTCGCTACGTTTC	0.502													25	53					0	0	1	0	0	
PML	5371	broad.mit.edu	37	15	74290724	74290724	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:74290724G>A	uc002awv.2	+	2	649	c.509G>A	c.(508-510)CGC>CAC	p.R170H	PML_uc002awm.2_Missense_Mutation_p.R170H|PML_uc002awl.2_Missense_Mutation_p.R170H|PML_uc002awj.1_Missense_Mutation_p.R170H|PML_uc002awk.2_Missense_Mutation_p.R170H|PML_uc002awn.2_Missense_Mutation_p.R170H|PML_uc002awo.2_Missense_Mutation_p.R170H|PML_uc002awp.2_Missense_Mutation_p.R170H|PML_uc002awq.2_Missense_Mutation_p.R170H|PML_uc002awr.2_Missense_Mutation_p.R170H|PML_uc002aws.2_Missense_Mutation_p.R170H|PML_uc002awt.2_Missense_Mutation_p.R170H|PML_uc002awu.2_Missense_Mutation_p.R170H|PML_uc010ule.1_Intron|PML_uc002aww.1_Missense_Mutation_p.R85H	NM_033238	NP_150241	P29590	PML_HUMAN	promyelocytic leukemia protein isoform 1	170					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis|endoplasmic reticulum calcium ion homeostasis|induction of apoptosis|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|maintenance of protein location in nucleus|negative regulation of angiogenesis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of mitotic cell cycle|negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|negative regulation of telomerase activity|negative regulation of telomere maintenance via telomerase|negative regulation of transcription, DNA-dependent|negative regulation of translation in response to oxidative stress|PML body organization|PML body organization|positive regulation of defense response to virus by host|positive regulation of histone deacetylation|protein complex assembly|protein stabilization|protein targeting|regulation of calcium ion transport into cytosol|regulation of protein phosphorylation|response to hypoxia|response to virus|transcription, DNA-dependent	cytoplasm|cytosol|early endosome membrane|extrinsic to endoplasmic reticulum membrane|insoluble fraction|nuclear matrix|nuclear membrane|nucleolus|nucleus|PML body	cobalt ion binding|DNA binding|protein binding|protein binding|protein heterodimerization activity|protein homodimerization activity|SUMO binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding|zinc ion binding			central_nervous_system(2)|kidney(2)|breast(1)	5						GCAGAGCTGCGCAACCAGTCG	0.617			T	RARA|PAX5	APL|ALL								23	44					0	0	1	0	0	
CYP1A1	1543	broad.mit.edu	37	15	75014767	75014767	+	Silent	SNP	G	A	A	rs144413202	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:75014767G>A	uc002ayp.3	-	2	794	c.672C>T	c.(670-672)TTC>TTT	p.F224F	CYP1A1_uc010bjv.2_Intron|CYP1A1_uc010bjw.2_Intron|CYP1A1_uc010bju.2_5'UTR|CYP1A1_uc010bjx.2_Intron|CYP1A1_uc002ayq.3_Silent_p.F224F|CYP1A1_uc010bjy.2_Silent_p.F224F|CYP1A1_uc010bjz.1_5'UTR	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	224					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	CCACCTCCCCGAAATTATTAT	0.493									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				30	68					0	0	1	0	0	
C15orf39	56905	broad.mit.edu	37	15	75500865	75500865	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:75500865G>A	uc002azp.3	+	2	2796	c.2476G>A	c.(2476-2478)GAT>AAT	p.D826N	C15orf39_uc002azq.3_Missense_Mutation_p.D826N|C15orf39_uc002azr.3_Missense_Mutation_p.D224N	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	826											0						GCAGCGCTTCGATCGCACCCA	0.687													3	9					0	0	1	0	0	
GOLGA6C	653641	broad.mit.edu	37	15	75562507	75562507	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:75562507C>T	uc002azs.1	+	18	2090	c.2013C>T	c.(2011-2013)ATC>ATT	p.I671I	uc002azu.1_5'Flank|uc010ulz.1_5'Flank	NM_001145224	NP_001138696	A6NDK9	GOG6C_HUMAN	golgi autoantigen, golgin subfamily a, 6D	683										ovary(1)	1						TACAGCAGATCGTGCAGCTGT	0.592													37	73					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	15	75595026	75595026	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:75595026C>T	uc002azx.1	-	1	281	c.31G>A	c.(31-33)GCC>ACC	p.A11T						SubName: Full=Putative uncharacterized protein DNM1P33;																		GGCATCAGGGCGGCCAGGCCA	0.607													7	13					0	0	1	0	0	
SIN3A	25942	broad.mit.edu	37	15	75664355	75664355	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:75664355G>A	uc002bai.2	-	21	4046	c.3787C>T	c.(3787-3789)CGT>TGT	p.R1263C	SIN3A_uc002baj.2_Missense_Mutation_p.R1263C|SIN3A_uc010uml.1_Missense_Mutation_p.R1263C	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	1263					blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						TATTTGACACGATACTTGTTA	0.532													32	69					0	0	1	0	0	
SNUPN	10073	broad.mit.edu	37	15	75893539	75893539	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:75893539C>A	uc002ban.2	-	8	789	c.699G>T	c.(697-699)AAG>AAT	p.K233N	SNUPN_uc002bao.2_Missense_Mutation_p.K233N|SNUPN_uc002bap.2_Missense_Mutation_p.K275N|SNUPN_uc002baq.2_Missense_Mutation_p.K233N|SNUPN_uc002bar.2_Missense_Mutation_p.K233N|SNUPN_uc002bas.2_Missense_Mutation_p.K233N	NM_005701	NP_005692	O95149	SPN1_HUMAN	snurportin 1	233	Necessary for binding to the m3G-cap structure.				ncRNA metabolic process|protein import into nucleus|spliceosomal snRNP assembly	cytosol|nuclear pore	protein transporter activity|RNA cap binding			pancreas(1)	1						AAGGGAAGTTCTTTAGCCCCA	0.363													40	70					1.38162e-09	1.48592e-09	1	1	0	
SNX33	257364	broad.mit.edu	37	15	75941999	75941999	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:75941999T>C	uc002bau.2	+	1	652	c.556T>C	c.(556-558)TTC>CTC	p.F186L	IMP3_uc002bat.2_5'Flank|SNX33_uc002bav.2_5'Flank	NM_153271	NP_695003	Q8WV41	SNX33_HUMAN	sorting nexin 33	186					cell communication		phosphatidylinositol binding|protein binding			ovary(1)	1						CCTCAACCGTTTCTCATGCTT	0.597													32	79					0	0	1	0	0	
CSPG4	1464	broad.mit.edu	37	15	75969500	75969500	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:75969500G>A	uc002baw.2	-	10	5453	c.5360C>T	c.(5359-5361)GCC>GTC	p.A1787V		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1787	Extracellular (Potential).|Cysteine-containing.|CSPG 12.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						ACCGCCGTGGGCATACACTAG	0.692													5	4					0	0	1	0	0	
SGK269	79834	broad.mit.edu	37	15	77425509	77425509	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:77425509G>A	uc002bcm.2	-	5	4223	c.3915C>T	c.(3913-3915)TGC>TGT	p.C1305C		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1305					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		AAAGGTCTTCGCATTTAACAG	0.483													58	85					0	0	1	0	0	
SGK269	79834	broad.mit.edu	37	15	77471135	77471135	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:77471135A>C	uc002bcm.2	-	3	3442	c.3134T>G	c.(3133-3135)CTC>CGC	p.L1045R	SGK269_uc002bcn.2_Missense_Mutation_p.L1045R	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1045					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TACATACCTGAGAATCTTTTT	0.363													21	37					0	0	1	0	0	
SH2D7	646892	broad.mit.edu	37	15	78390311	78390311	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:78390311C>T	uc010blb.1	+	3	307	c.307C>T	c.(307-309)CGA>TGA	p.R103*		NM_001101404	NP_001094874	A6NKC9	SH2D7_HUMAN	SH2 domain containing 7	103	SH2.										0						CAACCAGCTTCGAAACCGGCG	0.582													25	37					0	0	1	0	0	
DNAJA4	55466	broad.mit.edu	37	15	78562971	78562971	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:78562971T>G	uc002bdj.1	+	2	382	c.265T>G	c.(265-267)TTT>GTT	p.F89V	DNAJA4_uc002bdi.2_Missense_Mutation_p.F118V|DNAJA4_uc002bdk.2_Missense_Mutation_p.F62V|DNAJA4_uc002bdl.2_Missense_Mutation_p.F4V	NM_001130182	NP_001123654	Q8WW22	DNJA4_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 4	89	Gly-rich.				protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			skin(1)	1						CATGGACATCTTTGACATGTT	0.433													62	98					0	0	1	0	0	
DNAJA4	55466	broad.mit.edu	37	15	78568044	78568044	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:78568044G>A	uc002bdj.1	+	5	968	c.851G>A	c.(850-852)CGA>CAA	p.R284Q	DNAJA4_uc002bdi.2_Missense_Mutation_p.R313Q|DNAJA4_uc002bdk.2_Missense_Mutation_p.R257Q|DNAJA4_uc002bdm.1_Missense_Mutation_p.R68Q	NM_001130182	NP_001123654	Q8WW22	DNJA4_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 4	284					protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			skin(1)	1						TTGGACAATCGAATTCTTGTT	0.363													16	21					0	0	1	0	0	
IREB2	3658	broad.mit.edu	37	15	78770698	78770698	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:78770698C>T	uc002bdr.2	+	10	1417	c.1255C>T	c.(1255-1257)CGA>TGA	p.R419*	IREB2_uc010unb.1_Nonsense_Mutation_p.R169*	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	419							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		GAAATTGTTTCGAAATGACCA	0.353													25	54					0	0	1	0	0	
ADAMTS7	11173	broad.mit.edu	37	15	79059228	79059228	+	Missense_Mutation	SNP	C	T	T	rs141015964		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:79059228C>T	uc002bej.3	-	19	3236	c.3025G>A	c.(3025-3027)GGC>AGC	p.G1009S	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1009					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CTGGAGGAGCCGCTGCCTGAG	0.677													12	29					0	0	1	0	0	
MORF4L1	10933	broad.mit.edu	37	15	79172918	79172918	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:79172918A>C	uc002bel.2	+	3	340	c.152A>C	c.(151-153)AAA>ACA	p.K51T	MORF4L1_uc010bli.1_Missense_Mutation_p.K51T|MORF4L1_uc010blj.1_Missense_Mutation_p.K51T|MORF4L1_uc002bem.2_Missense_Mutation_p.K51T|MORF4L1_uc010une.1_5'UTR	NM_206839	NP_996670	Q9UBU8	MO4L1_HUMAN	MORF-related gene 15 isoform 2	51	Interaction with MYST1.				double-strand break repair via homologous recombination|histone deacetylation|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Sin3 complex	protein N-terminus binding				0						GGTTGGAATAAAAAGTGAGTA	0.299													12	31					0	0	1	0	0	
RASGRF1	5923	broad.mit.edu	37	15	79307749	79307749	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:79307749A>C	uc002beq.2	-	13	2121	c.1746T>G	c.(1744-1746)TGT>TGG	p.C582W	RASGRF1_uc002bep.2_Missense_Mutation_p.C582W|RASGRF1_uc010blm.1_Missense_Mutation_p.C504W|RASGRF1_uc002ber.3_Missense_Mutation_p.C582W|RASGRF1_uc010unh.1_5'UTR	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	582	PH 2.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						TGTTATCCACACACTGGAATC	0.512													16	37					0	0	1	0	0	
RASGRF1	5923	broad.mit.edu	37	15	79323837	79323837	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:79323837G>A	uc002beq.2	-	8	1542	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I	RASGRF1_uc002bep.2_Silent_p.I389I|RASGRF1_uc010blm.1_Silent_p.I311I|RASGRF1_uc002ber.3_Silent_p.I389I	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	389	DH.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GGAGGGTCAGGATGTACCTGG	0.582													6	15					0	0	1	0	0	
RASGRF1	5923	broad.mit.edu	37	15	79339308	79339308	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:79339308G>A	uc002beq.2	-	5	1033	c.658C>T	c.(658-660)CGG>TGG	p.R220W	RASGRF1_uc002bep.2_Missense_Mutation_p.R220W|RASGRF1_uc010blm.1_Missense_Mutation_p.R142W|RASGRF1_uc002ber.3_Missense_Mutation_p.R220W	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	220	IQ.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						TTCCACTTCCGCCGGCACAGC	0.582													25	42					0	0	1	0	0	
KIAA1024	23251	broad.mit.edu	37	15	79748821	79748821	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:79748821A>C	uc002bew.1	+	2	407	c.332A>C	c.(331-333)AAG>ACG	p.K111T	KIAA1024_uc010unk.1_Missense_Mutation_p.K111T	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	111						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						GGCCGCCAGAAGGTACGCAAG	0.522													38	57					0	0	1	0	0	
KIAA1024	23251	broad.mit.edu	37	15	79749039	79749039	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:79749039G>T	uc002bew.1	+	2	625	c.550G>T	c.(550-552)GAG>TAG	p.E184*	KIAA1024_uc010unk.1_Nonsense_Mutation_p.E184*	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	184						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						AGTTAGCAAAGAGGTGAAAAA	0.592													24	51					3.08376e-08	3.26638e-08	1	1	0	
KIAA1199	57214	broad.mit.edu	37	15	81188291	81188291	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:81188291A>C	uc002bfw.1	+	11	1561	c.1301A>C	c.(1300-1302)AAA>ACA	p.K434T	KIAA1199_uc010unn.1_Missense_Mutation_p.K434T	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	434										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CAGTCATGGAAACCTGGAGAT	0.502													28	57					0	0	1	0	0	
KIAA1199	57214	broad.mit.edu	37	15	81241258	81241258	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:81241258A>C	uc002bfw.1	+	29	4339	c.4079A>C	c.(4078-4080)AAG>ACG	p.K1360T	KIAA1199_uc010unn.1_Missense_Mutation_p.K1360T|MESDC2_uc002bfx.2_Intron|MESDC2_uc010uno.1_Intron	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	1360										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AAGAAGAAGAAGTTGTGAGGA	0.582													43	96					0	0	1	0	0	
MESDC1	59274	broad.mit.edu	37	15	81294772	81294772	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:81294772T>C	uc002bfz.2	+	1	1478	c.160T>C	c.(160-162)TCG>CCG	p.S54P		NM_022566	NP_072088	Q9H1K6	MESD1_HUMAN	mesoderm development candidate 1	54											0						GCTGCTGCTGTCGAGCGAGGC	0.701													8	15					0	0	1	0	0	
TMC3	342125	broad.mit.edu	37	15	81625178	81625178	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:81625178G>A	uc002bgo.1	-	22	2885	c.2885C>T	c.(2884-2886)TCC>TTC	p.S962F	TMC3_uc010blr.1_RNA	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	962	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						GTCTATCAGGGAGCGTGGGGG	0.607													11	21					0	0	1	0	0	
MEX3B	84206	broad.mit.edu	37	15	82336352	82336352	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:82336352C>T	uc002bgq.1	-	2	1174	c.859G>A	c.(859-861)GAC>AAC	p.D287N		NM_032246	NP_115622	Q6ZN04	MEX3B_HUMAN	mex-3 homolog B	287					protein autophosphorylation	cytoplasmic mRNA processing body|nucleus	calcium ion binding|RNA binding|zinc ion binding			breast(1)|kidney(1)	2						CTGGAGCTGTCGTTGCGGTAG	0.682													22	47					0	0	1	0	0	
EFTUD1	79631	broad.mit.edu	37	15	82444040	82444040	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:82444040C>A	uc002bgt.1	-	18	2924	c.2755G>T	c.(2755-2757)GAA>TAA	p.E919*	EFTUD1_uc002bgs.1_Nonsense_Mutation_p.E290*|EFTUD1_uc002bgu.1_Nonsense_Mutation_p.E868*	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	919					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						GAACAGGTTTCATTTTCCTCC	0.453													49	97					1.4374e-25	1.73394e-25	1	1	0	
EFTUD1	79631	broad.mit.edu	37	15	82444245	82444245	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:82444245A>G	uc002bgt.1	-	18	2719	c.2550T>C	c.(2548-2550)GGT>GGC	p.G850G	EFTUD1_uc002bgs.1_Silent_p.G221G|EFTUD1_uc002bgu.1_Silent_p.G799G	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	850					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						TGTCAGCTGGACCTGTCCATA	0.453													24	47					0	0	1	0	0	
AP3B2	8120	broad.mit.edu	37	15	83358164	83358164	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:83358164G>T	uc010uoh.1	-	2	332	c.155C>A	c.(154-156)TCT>TAT	p.S52Y	AP3B2_uc010uoi.1_Missense_Mutation_p.S52Y|AP3B2_uc010uoj.1_Missense_Mutation_p.S52Y|AP3B2_uc010uok.1_Missense_Mutation_p.S52Y	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	52					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			CAGCTTGAGAGAATCCTTGTT	0.582													11	24					4.36969e-10	4.72811e-10	1	1	0	
HOMER2	9455	broad.mit.edu	37	15	83561463	83561463	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:83561463G>A	uc002bjg.2	-	2	322	c.136C>T	c.(136-138)CGG>TGG	p.R46W	HOMER2_uc002bjh.2_Missense_Mutation_p.R46W|HOMER2_uc002bjj.2_Missense_Mutation_p.R46W|HOMER2_uc002bji.2_Missense_Mutation_p.R46W	NM_199330	NP_955362	Q9NSB8	HOME2_HUMAN	homer 2 isoform 2	46	WH1.				metabotropic glutamate receptor signaling pathway	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane					0						CTGATGATCCGATAGCTGTTC	0.502													66	135					0	0	1	0	0	
BTBD1	53339	broad.mit.edu	37	15	83698921	83698921	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:83698921C>T	uc002bjn.2	-	5	1225	c.1022G>A	c.(1021-1023)CGC>CAC	p.R341H	BTBD1_uc002bjo.2_Missense_Mutation_p.R341H	NM_025238	NP_079514	Q9H0C5	BTBD1_HUMAN	BTB (POZ) domain containing 1 isoform 1	341						cytoplasmic mRNA processing body|protein complex	protein binding			ovary(1)|central_nervous_system(1)	2				all cancers(203;0.000186)		GTAACCCCAGCGGCTTTCTAC	0.478													140	309					0	0	1	0	0	
BNC1	646	broad.mit.edu	37	15	83926276	83926276	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:83926276G>A	uc002bjt.1	-	5	2991	c.2903C>T	c.(2902-2904)TCG>TTG	p.S968L	BNC1_uc010uos.1_Missense_Mutation_p.S956L	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	968	C2H2-type 6.				epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GCGAACAGACGAAAACATGGT	0.498													55	110					0	0	1	0	0	
ADAMTSL3	57188	broad.mit.edu	37	15	84442274	84442274	+	Splice_Site	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:84442274G>T	uc002bjz.3	+	4	414	c.190_splice	c.e4-1	p.T64_splice	ADAMTSL3_uc002bjy.1_Splice_Site_p.T64_splice|ADAMTSL3_uc010bmt.1_Splice_Site_p.T64_splice|ADAMTSL3_uc010bmu.1_Splice_Site_p.T64_splice	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor							proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TTAACATCTAGACCTCAAGAA	0.438													20	31					1.64113e-05	1.69216e-05	1	1	0	
ADAMTSL3	57188	broad.mit.edu	37	15	84527579	84527579	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:84527579A>G	uc002bjz.3	+	8	1013	c.789A>G	c.(787-789)GGA>GGG	p.G263G	ADAMTSL3_uc002bjy.1_Silent_p.G263G|ADAMTSL3_uc010bmt.1_Silent_p.G263G|ADAMTSL3_uc010bmu.1_Silent_p.G263G	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	263						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding	p.G263*(1)		ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			CAGTGAAAGGACCTGCCCACC	0.313													37	73					0	0	1	0	0	
SEC11A	23478	broad.mit.edu	37	15	85230953	85230953	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:85230953G>A	uc002blb.1	-	3	582	c.214C>T	c.(214-216)CGA>TGA	p.R72*	SEC11A_uc002blc.1_Nonsense_Mutation_p.R46*	NM_014300	NP_055115	P67812	SC11A_HUMAN	SEC11-like 1	72	Lumenal (Potential).				energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	endoplasmic reticulum membrane|integral to membrane|microsome	protein binding|serine-type peptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(143;0.199)			TCTTCAACTCGATTTGTTAGA	0.373													33	51					0	0	1	0	0	
SLC28A1	9154	broad.mit.edu	37	15	85478326	85478326	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:85478326C>T	uc002blg.2	+	14	1486	c.1284C>T	c.(1282-1284)ATC>ATT	p.I428I	SLC28A1_uc010bnb.2_Silent_p.I428I|SLC28A1_uc010upe.1_Intron|SLC28A1_uc010upf.1_Silent_p.I428I|SLC28A1_uc010upg.1_Silent_p.I428I	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	428	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCGCCAACATCGCTGCCAACC	0.552													38	60					0	0	1	0	0	
AKAP13	11214	broad.mit.edu	37	15	86124509	86124509	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:86124509G>T	uc002blv.1	+	7	3380	c.3210G>T	c.(3208-3210)AAG>AAT	p.K1070N	AKAP13_uc002blt.1_Missense_Mutation_p.K1070N|AKAP13_uc002blu.1_Missense_Mutation_p.K1070N|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1070					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TTGGAGTGAAGAACACTCAAT	0.517													17	49					3.45872e-05	3.55908e-05	1	1	0	
AGBL1	123624	broad.mit.edu	37	15	86697732	86697732	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:86697732C>A	uc002blz.1	+	3	276	c.196C>A	c.(196-198)CTA>ATA	p.L66I		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	66					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						CAGGAAGAACCTATCCCATGG	0.468													4	32					0.150653	0.151022	1	1	0	
AGBL1	123624	broad.mit.edu	37	15	86807892	86807892	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:86807892A>C	uc002blz.1	+	10	1432	c.1352A>C	c.(1351-1353)AAG>ACG	p.K451T	AGBL1_uc002bma.1_Missense_Mutation_p.K182T|AGBL1_uc002bmb.1_Missense_Mutation_p.K145T	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	451					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						GTAATAGATAAGCTTCTGCAG	0.453													53	114					0	0	1	0	0	
NTRK3	4916	broad.mit.edu	37	15	88420315	88420315	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:88420315G>A	uc002bme.1	-	19	2533	c.2371C>T	c.(2371-2373)CGG>TGG	p.R791W	NTRK3_uc002bmh.2_Missense_Mutation_p.R769W|NTRK3_uc002bmf.1_Missense_Mutation_p.R777W	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	791	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			ACTCGGGGCCGCTCCAAAACA	0.527			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			20	30					0	0	1	0	0	
NTRK3	4916	broad.mit.edu	37	15	88472566	88472566	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:88472566G>A	uc002bme.1	-	16	2151	c.1989C>T	c.(1987-1989)ATC>ATT	p.I663I	NTRK3_uc002bmh.2_Silent_p.I655I|NTRK3_uc002bmf.1_Silent_p.I663I|NTRK3_uc010upl.1_Silent_p.I565I|NTRK3_uc010bnh.1_Silent_p.I655I	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	663	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TACCCGAGGCGATCTGACTGG	0.602			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			26	40					0	0	1	0	0	
NTRK3	4916	broad.mit.edu	37	15	88679173	88679173	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:88679173G>A	uc002bme.1	-	8	1026	c.864C>T	c.(862-864)AAC>AAT	p.N288N	NTRK3_uc002bmh.2_Silent_p.N288N|NTRK3_uc002bmf.1_Silent_p.N288N|NTRK3_uc010upl.1_Silent_p.N190N|NTRK3_uc010bnh.1_Silent_p.N288N|NTRK3_uc002bmg.2_Silent_p.N288N	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	288	Ig-like C2-type 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGCCCACCACGTTCTCTGCAA	0.522			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			32	44					0	0	1	0	0	
ACAN	176	broad.mit.edu	37	15	89403618	89403618	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:89403618A>G	uc010upo.1	+	13	7268	c.6894A>G	c.(6892-6894)GGA>GGG	p.G2298G	ACAN_uc010upp.1_Intron|ACAN_uc002bna.2_Intron	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2298					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			AGACAGAGGGACACGTCATAT	0.627													12	13					0	0	1	0	0	
FANCI	55215	broad.mit.edu	37	15	89807192	89807192	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:89807192T>C	uc010bnp.1	+	8	694	c.604T>C	c.(604-606)TTC>CTC	p.F202L	FANCI_uc002bnm.1_Missense_Mutation_p.F202L|FANCI_uc002bnn.1_RNA|FANCI_uc002bno.2_Missense_Mutation_p.F202L|FANCI_uc002bnp.1_Missense_Mutation_p.F23L	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	202					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					ATTGAGCATGTTCTCCAAGAT	0.418								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				42	81					0	0	1	0	0	
FANCI	55215	broad.mit.edu	37	15	89849327	89849327	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:89849327G>A	uc010bnp.1	+	32	3529	c.3439G>A	c.(3439-3441)GAG>AAG	p.E1147K	FANCI_uc002bnm.1_Missense_Mutation_p.E1087K|FANCI_uc002bnn.1_Intron|FANCI_uc002bnp.1_Missense_Mutation_p.E907K|FANCI_uc002bnq.1_Missense_Mutation_p.E560K	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	1147					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					ATTTTTCCACGAGCTGGTGCA	0.473								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				41	81					0	0	1	0	0	
POLG	5428	broad.mit.edu	37	15	89860719	89860719	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:89860719G>A	uc002bns.3	-	22	3813	c.3531C>T	c.(3529-3531)GTC>GTT	p.V1177V	POLG_uc002bnr.3_Silent_p.V1177V	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	1177					base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			TGAAAAAGGCGACTGACTGGG	0.507								DNA_polymerases_(catalytic_subunits)					29	59					0	0	1	0	0	
PEX11A	8800	broad.mit.edu	37	15	90226989	90226989	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:90226989C>T	uc002boi.2	-	3	458	c.363G>A	c.(361-363)ACG>ACA	p.T121T	PEX11A_uc010upy.1_RNA	NM_003847	NP_003838	O75192	PX11A_HUMAN	peroxisomal biogenesis factor 11 alpha	121	Lumenal (Potential).				cellular lipid metabolic process|peroxisome fission|signal transduction	integral to peroxisomal membrane					0	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			GAGCAGCCCTCGTTCGCCATT	0.493													53	109					0	0	1	0	0	
PEX11A	8800	broad.mit.edu	37	15	90227003	90227003	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:90227003C>A	uc002boi.2	-	3	444	c.349G>T	c.(349-351)GAG>TAG	p.E117*	PEX11A_uc010upy.1_RNA	NM_003847	NP_003838	O75192	PX11A_HUMAN	peroxisomal biogenesis factor 11 alpha	117	Lumenal (Potential).				cellular lipid metabolic process|peroxisome fission|signal transduction	integral to peroxisomal membrane					0	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			CGCCATTTCTCTTTGTTGATG	0.478													50	98					3.76525e-18	4.39261e-18	1	1	0	
WDR93	56964	broad.mit.edu	37	15	90255298	90255298	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:90255298C>A	uc002boj.2	+	5	704	c.603C>A	c.(601-603)ATC>ATA	p.I201I	WDR93_uc010bnr.2_Silent_p.I201I	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	201					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			AGATGGAGATCTCTCAAGGAG	0.403													16	35					7.07596e-05	7.25576e-05	1	1	0	
ANPEP	290	broad.mit.edu	37	15	90340835	90340835	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:90340835C>A	uc002bop.3	-	15	2420	c.2128G>T	c.(2128-2130)GAC>TAC	p.D710Y		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	710	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	TCGGAGCGGTCAAACATGAGC	0.547													48	122					1.35964e-18	1.59048e-18	1	1	0	
SEMA4B	10509	broad.mit.edu	37	15	90770845	90770845	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:90770845C>T	uc002boy.2	+	14	2028	c.1745C>T	c.(1744-1746)TCG>TTG	p.S582L	SEMA4B_uc002boz.2_Missense_Mutation_p.S582L|SEMA4B_uc010uqd.1_Missense_Mutation_p.S420L|SEMA4B_uc002bpa.2_Missense_Mutation_p.S420L|SEMA4B_uc010bnv.1_Missense_Mutation_p.S220L	NM_020210	NP_064595			semaphorin 4B precursor											ovary(1)|breast(1)|kidney(1)	3	Melanoma(11;0.00551)|Lung NSC(78;0.0125)|all_lung(78;0.0272)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.217)			AGCGCGTCTTCGGTTGTGTCC	0.607													9	21					0	0	1	0	0	
TTLL13	440307	broad.mit.edu	37	15	90799398	90799398	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:90799398C>T	uc002bpd.1	+	6	862	c.574C>T	c.(574-576)CGT>TGT	p.R192C	TTLL13_uc002bpe.1_Intron	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13	192	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			GTCCTACGGTCGTCAGCGAAA	0.562													36	80					0	0	1	0	0	
IQGAP1	8826	broad.mit.edu	37	15	91034623	91034623	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:91034623A>C	uc002bpl.1	+	34	4408	c.4307A>C	c.(4306-4308)GAC>GCC	p.D1436A	IQGAP1_uc010uqg.1_Missense_Mutation_p.D57A	NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	1436	C2.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			AAAACACCTGACAAGATGAAA	0.423													29	58					0	0	1	0	0	
SLCO3A1	28232	broad.mit.edu	37	15	92669380	92669380	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:92669380C>T	uc002bqx.2	+	6	1465	c.1264C>T	c.(1264-1266)CGG>TGG	p.R422W	SLCO3A1_uc002bqy.2_Missense_Mutation_p.R422W|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.R364W	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	422	Helical; Name=9; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			GGGGGCCATTCGGATGGCCAT	0.582													23	62					0	0	1	0	0	
SPATA8	145946	broad.mit.edu	37	15	97327401	97327401	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:97327401C>A	uc002bue.2	+	2	318	c.108C>A	c.(106-108)TTC>TTA	p.F36L	uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	36										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			CGCGACATTTCTCAGAAGCCA	0.577													37	59					1.49673e-21	1.77673e-21	1	1	0	
FAM169B	283777	broad.mit.edu	37	15	99023939	99023939	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:99023939C>T	uc002buk.1	-	4	324	c.74G>A	c.(73-75)AGA>AAA	p.R25K		NM_182562	NP_872368	Q8N8A8	F169B_HUMAN	hypothetical protein LOC283777	25											0						ATCCAAATTTCTCTCCAATCT	0.393													23	74					0	0	1	0	0	
IGF1R	3480	broad.mit.edu	37	15	99456496	99456496	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:99456496C>T	uc002bul.2	+	8	1863	c.1813C>T	c.(1813-1815)CGC>TGC	p.R605C	IGF1R_uc010urq.1_Missense_Mutation_p.R605C|IGF1R_uc010bon.2_Missense_Mutation_p.R605C|IGF1R_uc010urr.1_Missense_Mutation_p.R55C	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	605	Fibronectin type-III 1.				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	CTTGTACATTCGCACCAATGC	0.537													33	82					0	0	1	0	0	
SYNM	23336	broad.mit.edu	37	15	99671359	99671359	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:99671359G>A	uc002bup.2	+	6	2914	c.2794G>A	c.(2794-2796)GAA>AAA	p.E932K	SYNM_uc002buo.2_Missense_Mutation_p.E932K|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	932	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						AATACCCCACGAATTCCACAC	0.547													7	7					0	0	1	0	0	
ADAMTS17	170691	broad.mit.edu	37	15	100533305	100533305	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:100533305G>A	uc002bvv.1	-	20	2976	c.2897C>T	c.(2896-2898)GCC>GTC	p.A966V		NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	966	TSP type-1 4.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		GTCCTCGCAGGCCTCCTCGGC	0.622													26	74					0	0	1	0	0	
ADAMTS17	170691	broad.mit.edu	37	15	100672288	100672288	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:100672288A>G	uc002bvv.1	-	12	1724	c.1645T>C	c.(1645-1647)TGG>CGG	p.W549R	ADAMTS17_uc002bvx.1_Missense_Mutation_p.W306R	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	549	TSP type-1 1.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		CAGGCGCCCCACGGGCTCCAG	0.672											OREG0023513	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	34					0	0	1	0	0	
ALDH1A3	220	broad.mit.edu	37	15	101432808	101432808	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:101432808T>C	uc002bwn.3	+	4	543	c.439T>C	c.(439-441)TGG>CGG	p.W147R	ALDH1A3_uc010bpb.2_Intron	NM_000693	NP_000684	P47895	AL1A3_HUMAN	aldehyde dehydrogenase 1A3	147					retinal metabolic process	cytoplasm	aldehyde dehydrogenase|protein homodimerization activity			central_nervous_system(2)|lung(1)|pancreas(1)	4	Lung NSC(78;0.00144)|all_lung(78;0.0018)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)		NADH(DB00157)|Vitamin A(DB00162)	CTTTGCAGGGTGGGCAGACAA	0.478													33	77					0	0	1	0	0	
CHSY1	22856	broad.mit.edu	37	15	101775542	101775542	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:101775542A>C	uc002bwt.1	-	3	1044	c.561T>G	c.(559-561)AGT>AGG	p.S187R		NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	187	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TGCTGTTCAAACTCCTCAGGA	0.517													44	57					0	0	1	0	0	
OR4F6	390648	broad.mit.edu	37	15	102346172	102346172	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:102346172G>A	uc010utr.1	+	1	250	c.250G>A	c.(250-252)GAC>AAC	p.D84N		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			GATGATTTATGACCTTTTCAG	0.473													93	215					0	0	1	0	0	
OR4F6	390648	broad.mit.edu	37	15	102346599	102346599	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:102346599A>C	uc010utr.1	+	1	677	c.677A>C	c.(676-678)CAG>CCG	p.Q226P		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			GTGACTGTTCAGAAAAAATCT	0.348													39	90					0	0	1	0	0	
OR4F6	390648	broad.mit.edu	37	15	102346821	102346821	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr15:102346821G>T	uc010utr.1	+	1	899	c.899G>T	c.(898-900)AGA>ATA	p.R300I		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			GCAATGAGAAGACGATGCTCT	0.313													5	24					1.23904e-05	1.27901e-05	1	1	0	
RAB11FIP3	9727	broad.mit.edu	37	16	570496	570496	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:570496A>G	uc002chf.2	+	13	2393	c.2054A>G	c.(2053-2055)AAC>AGC	p.N685S	RAB11FIP3_uc010uuf.1_Missense_Mutation_p.N389S|RAB11FIP3_uc010uug.1_Missense_Mutation_p.N420S	NM_014700	NP_055515	O75154	RFIP3_HUMAN	rab11-family interacting protein 3 isoform 1	685	Potential.				cell cycle|cytokinesis|endocytic recycling|protein transport	centrosome|cleavage furrow|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding				0		Hepatocellular(16;0.0218)				GAGGAGCTGAACGGGCAGATC	0.597													38	77					0	0	1	0	0	
MSLNL	401827	broad.mit.edu	37	16	823249	823249	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:823249G>A	uc002cjz.1	-	10	2019	c.2019C>T	c.(2017-2019)TAC>TAT	p.Y673Y		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	322	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						CTGCACAGTCGTAGTGCACCA	0.637													18	54					0	0	1	0	0	
MSLNL	401827	broad.mit.edu	37	16	832053	832053	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:832053G>A	uc002cjz.1	-	2	70	c.70C>T	c.(70-72)CCT>TCT	p.P24S		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	504	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						GTGGGTCCAGGACTAGCTGGA	0.682													3	8					0	0	1	0	0	
SSTR5	6755	broad.mit.edu	37	16	1129228	1129228	+	Silent	SNP	C	T	T	rs35742768	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:1129228C>T	uc002ckq.2	+	1	448	c.360C>T	c.(358-360)GGC>GGT	p.G120G	LOC146336_uc002cko.2_5'Flank|LOC146336_uc002ckp.1_5'Flank	NM_001053	NP_001044	P35346	SSR5_HUMAN	somatostatin receptor 5	120	Helical; Name=3; (Potential).				negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			lung(1)	1		Hepatocellular(780;0.00369)			Octreotide(DB00104)	CGCTGGACGGCGTCAACCAGT	0.677													15	34					0	0	1	0	0	
C1QTNF8	390664	broad.mit.edu	37	16	1143888	1143888	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:1143888G>A	uc010uuw.1	-	4	646	c.372C>T	c.(370-372)CGC>CGT	p.R124R		NM_207419	NP_997302	P60827	C1QT8_HUMAN	C1q and tumor necrosis factor related protein 8	124	C1q.					collagen				skin(1)	1		Hepatocellular(780;0.00369)				GCAGGCCCTCGCGCCGGCCCA	0.761													8	14					0	0	1	0	0	
CACNA1H	8912	broad.mit.edu	37	16	1270018	1270018	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:1270018A>G	uc002cks.2	+	35	6334	c.6086A>G	c.(6085-6087)GAC>GGC	p.D2029G	CACNA1H_uc002ckt.2_Missense_Mutation_p.D2023G|CACNA1H_uc002cku.2_Missense_Mutation_p.D724G|CACNA1H_uc010brj.2_Missense_Mutation_p.D740G|CACNA1H_uc002ckv.2_Missense_Mutation_p.D718G	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2029	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	GGGAAGATTGACAGCCCTAGG	0.662													3	9					0	0	1	0	0	
GNPTG	84572	broad.mit.edu	37	16	1412835	1412835	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:1412835G>T	uc002clm.2	+	10	786	c.751G>T	c.(751-753)GAA>TAA	p.E251*		NM_032520	NP_115909	Q9UJJ9	GNPTG_HUMAN	N-acetylglucosamine-1-phosphotransferase, gamma	251						extracellular region|Golgi apparatus	protein binding			central_nervous_system(1)	1		Hepatocellular(780;0.0893)				GGCTCATAAAGAACTCTCAAA	0.567													58	99					1.45723e-30	1.78306e-30	1	1	0	
SPSB3	90864	broad.mit.edu	37	16	1828538	1828538	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:1828538C>T	uc002cmr.2	-	2	235	c.202G>A	c.(202-204)GAG>AAG	p.E68K	SPSB3_uc002cms.2_5'UTR|SPSB3_uc002cmt.2_5'UTR|SPSB3_uc002cmu.2_Missense_Mutation_p.E68K|SPSB3_uc002cmv.2_5'UTR|SPSB3_uc010uvm.1_Missense_Mutation_p.E123K	NM_080861	NP_543137	Q6PJ21	SPSB3_HUMAN	splA/ryanodine receptor domain and SOCS box	68					intracellular signal transduction						0						CAGAAGGACTCGCCGGTCACG	0.677													18	43					0	0	1	0	0	
NUBP2	10101	broad.mit.edu	37	16	1836838	1836838	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:1836838C>T	uc002cmw.3	+	3	305	c.216C>T	c.(214-216)TGC>TGT	p.C72C	NUBP2_uc002cmx.3_Intron|NUBP2_uc010brx.2_Silent_p.C12C	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	72						microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						TGCACCAGTGCGACCGCGGCT	0.677													18	33					0	0	1	0	0	
RPL3L	6123	broad.mit.edu	37	16	1994856	1994856	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:1994856C>A	uc002cnh.2	-	10	1253	c.1206G>T	c.(1204-1206)GAG>GAT	p.E402D	SEPX1_uc010uvs.1_5'Flank	NM_005061	NP_005052	Q92901	RL3L_HUMAN	ribosomal protein L3-like	402					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome				0						CTCCCGAGGTCTCCGGCGTTT	0.607													74	137					1.25742e-37	1.55578e-37	1	1	0	
PKD1	5310	broad.mit.edu	37	16	2159869	2159869	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2159869T>C	uc002cos.1	-	15	5508	c.5299A>G	c.(5299-5301)ACC>GCC	p.T1767A	PKD1_uc002cot.1_Missense_Mutation_p.T1767A	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1767	PKD 13.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CTATGGGTGGTAAATGGCTCG	0.627													13	39					0	0	1	0	0	
CASKIN1	57524	broad.mit.edu	37	16	2239124	2239124	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2239124G>A	uc010bsg.1	-	6	553	c.521C>T	c.(520-522)GCG>GTG	p.A174V		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	174	ANK 4.				signal transduction	cytoplasm				skin(2)	2						CAGCAGCGCCGCACACATATT	0.657													24	28					0	0	1	0	0	
C16orf79	283870	broad.mit.edu	37	16	2260149	2260149	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2260149G>A	uc010bsh.2	-	3	491	c.314C>T	c.(313-315)GCG>GTG	p.A105V	C16orf79_uc002cpi.1_Missense_Mutation_p.A105V	NM_182563	NP_872369	Q6PL45	CP079_HUMAN	hypothetical protein LOC283870	105	BRICHOS.					integral to membrane				central_nervous_system(1)	1						GAACAGCACCGCCCAGCTGTG	0.706													9	15					0	0	1	0	0	
ABCA3	21	broad.mit.edu	37	16	2349486	2349486	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2349486G>A	uc002cpy.1	-	14	2371	c.1659C>T	c.(1657-1659)AAC>AAT	p.N553N	ABCA3_uc010bsk.1_Silent_p.N495N|ABCA3_uc010bsl.1_Silent_p.N553N	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	553	ABC transporter 1.				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				ACAGGTTGAGGTTCAGGTCTC	0.652													58	124					0	0	1	0	0	
ABCA3	21	broad.mit.edu	37	16	2367685	2367685	+	Silent	SNP	G	A	A	rs35161127	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2367685G>A	uc002cpy.1	-	9	1666	c.954C>T	c.(952-954)ATC>ATT	p.I318I	ABCA3_uc010bsk.1_Silent_p.I318I|ABCA3_uc010bsl.1_Silent_p.I318I	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	318	Helical; (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				AGGAGGCGGCGATGAGGAGGA	0.627													27	68					0	0	1	0	0	
ABCA3	21	broad.mit.edu	37	16	2369629	2369629	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2369629G>A	uc002cpy.1	-	8	1538	c.826C>T	c.(826-828)CTC>TTC	p.L276F	ABCA3_uc010bsk.1_Missense_Mutation_p.L276F|ABCA3_uc010bsl.1_Missense_Mutation_p.L276F	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	276	Helical; (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GCAATGGTGAGCGCGGTGTAG	0.622													24	67					0	0	1	0	0	
CCNF	899	broad.mit.edu	37	16	2481197	2481197	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2481197G>A	uc002cqd.1	+	2	171	c.83G>A	c.(82-84)CGA>CAA	p.R28Q	CCNF_uc002cqe.1_5'UTR	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	28	Nuclear localization signal 1.				cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				AGGAGGCCCCGAAACCTGACC	0.488													24	74					0	0	1	0	0	
CCNF	899	broad.mit.edu	37	16	2503465	2503465	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2503465G>A	uc002cqd.1	+	15	1730	c.1642G>A	c.(1642-1644)GAC>AAC	p.D548N	CCNF_uc002cqe.1_Missense_Mutation_p.D240N	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	548					cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				AGACAGCCCCGACCCCCCGAC	0.617													25	46					0	0	1	0	0	
PDPK1	5170	broad.mit.edu	37	16	2627488	2627488	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2627488T>G	uc002cqs.2	+	7	916	c.772T>G	c.(772-774)TCC>GCC	p.S258A	PDPK1_uc002cqt.2_Missense_Mutation_p.S131A|PDPK1_uc010bsn.2_Missense_Mutation_p.S258A|PDPK1_uc002cqu.2_Missense_Mutation_p.S231A|PDPK1_uc002cqv.1_Missense_Mutation_p.S231A	NM_002613	NP_002604	O15530	PDPK1_HUMAN	3-phosphoinositide dependent protein kinase-1	258	Protein kinase.				actin cytoskeleton organization|activation of protein kinase B activity|insulin receptor signaling pathway|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|peptidyl-threonine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|synaptic transmission|T cell costimulation|T cell receptor signaling pathway	cytosol|nucleoplasm|plasma membrane	3-phosphoinositide-dependent protein kinase activity|ATP binding			central_nervous_system(2)|ovary(1)	3		Ovarian(90;0.17)			Celecoxib(DB00482)	CACGGAGAAGTCCGCCTGTAA	0.483													7	13					0	0	1	0	0	
SRRM2	23524	broad.mit.edu	37	16	2812791	2812791	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2812791T>G	uc002crk.2	+	11	2811	c.2262T>G	c.(2260-2262)ATT>ATG	p.I754M	SRRM2_uc002crj.1_Missense_Mutation_p.I658M|SRRM2_uc002crl.1_Missense_Mutation_p.I754M|SRRM2_uc010bsu.1_Missense_Mutation_p.I658M	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	754	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						AATCTCGCATTTCTTCAAGGC	0.488													66	139					0	0	1	0	0	
SRRM2	23524	broad.mit.edu	37	16	2817372	2817372	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:2817372T>C	uc002crk.2	+	11	7392	c.6843T>C	c.(6841-6843)GCT>GCC	p.A2281A	SRRM2_uc002crj.1_Silent_p.A2185A|SRRM2_uc002crl.1_Silent_p.A2281A|SRRM2_uc010bsu.1_Silent_p.A2185A	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2281	Ala-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CACCTTCGGCTGTGAACCTGG	0.632													101	152					0	0	1	0	0	
CLDN6	9074	broad.mit.edu	37	16	3065372	3065372	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3065372C>A	uc002csu.3	-	2	711	c.651G>T	c.(649-651)AAG>AAT	p.K217N		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	217	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						AGACGTAATTCTTGGTAGGGT	0.617													40	63					6.2361e-21	7.37493e-21	1	1	0	
OR1F2P	26184	broad.mit.edu	37	16	3266228	3266228	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3266228G>A	uc010uwv.1	+	1	667	c.519G>A	c.(517-519)ACG>ACA	p.T173T		NR_002169				RecName: Full=Olfactory receptor 1F2; AltName: Full=OLFmf2;												0						CCCTAGTCACGATCACCCCAT	0.522													16	45					0	0	1	0	0	
ZNF263	10127	broad.mit.edu	37	16	3340119	3340119	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3340119G>T	uc002cuq.2	+	6	1945	c.1613G>T	c.(1612-1614)AGA>ATA	p.R538I	ZNF263_uc010uww.1_Missense_Mutation_p.R186I|ZNF263_uc002cur.2_Missense_Mutation_p.R186I	NM_005741	NP_005732	O14978	ZN263_HUMAN	zinc finger protein 263	538	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(3)|ovary(1)	4						ATTCACGAAAGAACTCATGAG	0.507													19	40					1.67942e-08	1.78672e-08	1	1	0	
TIGD7	91151	broad.mit.edu	37	16	3349373	3349373	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3349373G>A	uc002cus.2	-	1	2028	c.1242C>T	c.(1240-1242)GGC>GGT	p.G414G	ZNF263_uc002cur.2_3'UTR	NM_033208	NP_149985	Q6NT04	TIGD7_HUMAN	tigger transposable element derived 7	414					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						CATGTTCTAAGCCTTGAAAAT	0.353													91	172					0	0	1	0	0	
TIGD7	91151	broad.mit.edu	37	16	3349597	3349597	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3349597G>A	uc002cus.2	-	1	1804	c.1018C>T	c.(1018-1020)CGG>TGG	p.R340W	ZNF263_uc002cur.2_3'UTR	NM_033208	NP_149985	Q6NT04	TIGD7_HUMAN	tigger transposable element derived 7	340	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						CTATACAGCCGTTTGCAGCTC	0.274													24	53					0	0	1	0	0	
ZNF597	146434	broad.mit.edu	37	16	3486471	3486471	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3486471A>G	uc002cvd.2	-	4	1412	c.1228T>C	c.(1228-1230)TTG>CTG	p.L410L		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	410	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATGAGATGCAAATTCGACTTG	0.378													17	36					0	0	1	0	0	
BTBD12	84464	broad.mit.edu	37	16	3644567	3644567	+	Missense_Mutation	SNP	C	T	T	rs115866745	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3644567C>T	uc002cvp.2	-	10	2674	c.2047G>A	c.(2047-2049)GCC>ACC	p.A683T		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	683					DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						TTGACCATGGCGCCAAAGTCA	0.592								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				13	37					0	0	1	0	0	
TRAP1	10131	broad.mit.edu	37	16	3713498	3713498	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3713498C>T	uc002cvt.3	-	14	1724	c.1635G>A	c.(1633-1635)AAG>AAA	p.K545K	TRAP1_uc002cvs.2_Silent_p.K336K|TRAP1_uc010uxf.1_Silent_p.K492K|uc002cvu.2_RNA	NM_016292	NP_057376	Q12931	TRAP1_HUMAN	TNF receptor-associated protein 1 precursor	545					cellular response to oxidative stress|protein folding	mitochondrion	ATP binding|tumor necrosis factor receptor binding|unfolded protein binding			central_nervous_system(1)	1		Ovarian(90;0.0261)				AGATCAGCTTCTTCTTGTCAA	0.552													40	72					0	0	1	0	0	
CREBBP	1387	broad.mit.edu	37	16	3807913	3807913	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3807913C>T	uc002cvv.2	-	18	3710	c.3506G>A	c.(3505-3507)CGC>CAC	p.R1169H	CREBBP_uc002cvw.2_Missense_Mutation_p.R1131H	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1169	Bromo.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GGATGTCTTGCGATTATAGAG	0.512			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				33	45					0	0	1	0	0	
CREBBP	1387	broad.mit.edu	37	16	3900321	3900321	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:3900321C>T	uc002cvv.2	-	2	979	c.775G>A	c.(775-777)GCA>ACA	p.A259T	CREBBP_uc002cvw.2_Missense_Mutation_p.A259T	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	259	Interaction with SRCAP.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		CCTGCCTGTGCGGTGTTCAGT	0.577			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				33	73					0	0	1	0	0	
ADCY9	115	broad.mit.edu	37	16	4015871	4015871	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:4015871G>T	uc002cvx.2	-	11	4506	c.3967C>A	c.(3967-3969)CGA>AGA	p.R1323R		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	1323	Cytoplasmic (Potential).			QHQLSISPDIRVQVDGSIGRSPTDEIANLVPSVQYVDKTSL GSDSSTQAKDAHLSPKRPWKEPVKAEERGRFGKAIEKDDCD ETGIEEANELTKLNVSKSV -> APAVHLPRHPRPGGWQHR TVSHRRDCQPGAFCPVCGQDISGF (in Ref. 1; AAC24201).	activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TTGCCAAATCGACCCCTTTCT	0.537													35	73					4.34311e-12	4.79046e-12	1	1	0	
ADCY9	115	broad.mit.edu	37	16	4016451	4016451	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:4016451G>A	uc002cvx.2	-	11	3926	c.3387C>T	c.(3385-3387)AGC>AGT	p.S1129S		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	1129	Guanylate cyclase 2.|Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						CCTGCGGGTGGCTGCCGTCCT	0.587													32	55					0	0	1	0	0	
GLIS2	84662	broad.mit.edu	37	16	4383520	4383520	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:4383520G>A	uc002cwc.1	+	2	402	c.345G>A	c.(343-345)TCG>TCA	p.S115S		NM_032575	NP_115964	Q9BZE0	GLIS2_HUMAN	GLIS family zinc finger 2	115	Transcription activation (By similarity).|Interaction with CTNND1 (By similarity).				cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development	cytoplasm|nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|transcription regulatory region DNA binding|zinc ion binding				0						CCAGTGCCTCGGTAAGGAGGG	0.453													15	17					0	0	1	0	0	
NAGPA	51172	broad.mit.edu	37	16	5081783	5081783	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:5081783C>A	uc002cyg.2	-	3	666	c.645G>T	c.(643-645)GAG>GAT	p.E215D	ALG1_uc002cyj.2_5'Flank|NAGPA_uc010buc.2_5'Flank|NAGPA_uc002cyf.2_Missense_Mutation_p.E73D|NAGPA_uc002cyh.2_RNA|NAGPA_uc002cyi.2_Intron|NAGPA_uc010uxx.1_3'UTR	NM_016256	NP_057340	Q9UK23	NAGPA_HUMAN	N-acetylglucosamine-1-phosphodiester	215	Lumenal (Potential).				carbohydrate metabolic process|lysosome organization|protein modification process|protein targeting to lysosome	Golgi cisterna membrane|integral to membrane	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity				0					N-Acetyl-D-glucosamine(DB00141)	TGGCTTGGCTCTCGTTGATGT	0.572													31	222					2.14196e-07	2.24787e-07	1	1	0	
C16orf89	146556	broad.mit.edu	37	16	5105290	5105290	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:5105290A>C	uc010bud.2	-	6	1027	c.939T>G	c.(937-939)ATT>ATG	p.I313M	ALG1_uc002cyj.2_Intron|C16orf89_uc002cyk.3_Missense_Mutation_p.I313M	NM_152459	NP_689672	Q6UX73	CP089_HUMAN	hypothetical protein LOC146556 isoform 1	275						extracellular region				ovary(1)|skin(1)	2						GCCAGCTGAGAATGGCCTCCA	0.637													12	16					0	0	1	0	0	
A2BP1	54715	broad.mit.edu	37	16	7759064	7759064	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:7759064A>G	uc002cys.2	+	15	1990	c.1002A>G	c.(1000-1002)GGA>GGG	p.G334G	A2BP1_uc002cyt.2_Silent_p.G307G|A2BP1_uc010uxz.1_Silent_p.G377G|A2BP1_uc010uya.1_Missense_Mutation_p.D309G|A2BP1_uc010uyb.1_Silent_p.G334G|A2BP1_uc002cyw.2_Missense_Mutation_p.D373G|A2BP1_uc002cyy.2_Silent_p.G355G|A2BP1_uc002cyx.2_Silent_p.G355G|A2BP1_uc010uyc.1_Silent_p.G328G	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	334					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		TCAGTTACGGACGAGTTTATG	0.458													23	60					0	0	1	0	0	
USP7	7874	broad.mit.edu	37	16	8988445	8988445	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:8988445T>G	uc002czl.2	-	30	3363	c.3164A>C	c.(3163-3165)GAG>GCG	p.E1055A	USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.E956A|USP7_uc002czk.2_Missense_Mutation_p.E1039A	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	1055					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						TACTTCATACTCGTCTTCATT	0.423													28	36					0	0	1	0	0	
USP7	7874	broad.mit.edu	37	16	9000408	9000408	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:9000408C>A	uc002czl.2	-	13	1502	c.1303G>T	c.(1303-1305)GAA>TAA	p.E435*	USP7_uc010uyk.1_Nonsense_Mutation_p.E336*|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Nonsense_Mutation_p.E336*|USP7_uc002czk.2_Nonsense_Mutation_p.E419*|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	435					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						TGCAAAAATTCATCAAGTGGT	0.318													17	38					4.7546e-09	5.08881e-09	1	1	0	
C16orf72	29035	broad.mit.edu	37	16	9196898	9196898	+	Missense_Mutation	SNP	G	A	A	rs137974792	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:9196898G>A	uc002czm.2	+	3	730	c.365G>A	c.(364-366)CGA>CAA	p.R122Q		NM_014117	NP_054836	Q14CZ0	CP072_HUMAN	hypothetical protein LOC29035	122								p.R122Q(1)		large_intestine(1)	1						GGCTATCAGCGACGCAATAAG	0.393													33	65					0	0	1	0	0	
GRIN2A	2903	broad.mit.edu	37	16	9916169	9916169	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:9916169T>G	uc002czo.3	-	10	2668	c.2120A>C	c.(2119-2121)AAA>ACA	p.K707T	GRIN2A_uc010uym.1_Missense_Mutation_p.K707T|GRIN2A_uc010uyn.1_Missense_Mutation_p.K550T|GRIN2A_uc002czr.3_Missense_Mutation_p.K707T	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	707	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTGATTAAATTTGGTCATGTA	0.463													41	66					0	0	1	0	0	
NUBP1	4682	broad.mit.edu	37	16	10861865	10861865	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:10861865T>C	uc002daa.1	+	10	903	c.880T>C	c.(880-882)TTA>CTA	p.L294L	FAM18A_uc010uyr.1_Intron|FAM18A_uc010uys.1_Intron|FAM18A_uc010uyt.1_Intron|FAM18A_uc010bun.2_Intron|FAM18A_uc010uyu.1_Intron|FAM18A_uc002dad.3_Intron|FAM18A_uc010buo.1_3'UTR|FAM18A_uc002daf.1_RNA|NUBP1_uc002dab.1_Silent_p.L283L|FAM18A_uc002dae.1_3'UTR	NM_002484	NP_002475	P53384	NUBP1_HUMAN	nucleotide binding protein 1	294					cell growth|cellular iron ion homeostasis|iron-sulfur cluster assembly	cytosol	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|nucleoside-triphosphatase activity|protein binding			ovary(1)|skin(1)	2						CCCAGCCACGTTAGCCTACAG	0.443													38	69					0	0	1	0	0	
CIITA	4261	broad.mit.edu	37	16	10998602	10998602	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:10998602G>A	uc002dai.3	+	10	1072	c.939G>A	c.(937-939)GAG>GAA	p.E313E	CIITA_uc002daj.3_Silent_p.E314E|CIITA_uc002dak.3_Silent_p.E264E|CIITA_uc002dag.2_Silent_p.E313E|CIITA_uc002dah.2_Silent_p.E265E|CIITA_uc010bup.1_Silent_p.E313E	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	313					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CATCTCCAGAGCACAAGACGT	0.602			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								63	99					0	0	1	0	0	
CIITA	4261	broad.mit.edu	37	16	11000864	11000864	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:11000864A>C	uc002dai.3	+	11	1648	c.1515A>C	c.(1513-1515)GAA>GAC	p.E505D	CIITA_uc002daj.3_Missense_Mutation_p.E506D|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Missense_Mutation_p.E505D|CIITA_uc002dah.2_Missense_Mutation_p.E457D|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	505	NACHT.				interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						AGGAGCTGGAAGCGCAAGATG	0.647			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								41	73					0	0	1	0	0	
CLEC16A	23274	broad.mit.edu	37	16	11071150	11071150	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:11071150A>G	uc002dao.2	+	8	1027	c.797A>G	c.(796-798)GAC>GGC	p.D266G	CLEC16A_uc002dan.3_Missense_Mutation_p.D264G	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	266										ovary(1)|central_nervous_system(1)	2						TATCTCAATGACATCCTGATC	0.537													20	56					0	0	1	0	0	
C16orf75	116028	broad.mit.edu	37	16	11444642	11444642	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:11444642C>T	uc002daw.1	+	2	457	c.439C>T	c.(439-441)CCT>TCT	p.P147S	C16orf75_uc002daq.1_RNA	NM_152308	NP_689521	Q96E14	RMI2_HUMAN	RecQ-mediated genome instability protein 2	147					DNA replication	nucleus	DNA binding				0						CAGGAATATTCCTTAGAGTAT	0.398			T	CIITA	PMBL|Hodgkin Lymphona|								32	39					0	0	1	0	0	
ZC3H7A	29066	broad.mit.edu	37	16	11862354	11862354	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:11862354T>C	uc002dbk.2	-	11	1375	c.1177A>G	c.(1177-1179)AAT>GAT	p.N393D	ZC3H7A_uc002dbj.2_5'Flank|ZC3H7A_uc002dbl.2_Missense_Mutation_p.N393D|ZC3H7A_uc002dbm.1_Missense_Mutation_p.N303D	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	393						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						CCTGGTCCATTCATCTGCAAG	0.328													23	41					0	0	1	0	0	
RSL1D1	26156	broad.mit.edu	37	16	11931697	11931697	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:11931697A>G	uc002dbp.1	-	9	1493	c.1420T>C	c.(1420-1422)TCC>CCC	p.S474P	RSL1D1_uc010buv.1_Missense_Mutation_p.S473P|RSL1D1_uc010uyw.1_Missense_Mutation_p.S254P	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	474					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						GGGGTGTGGGAAGCTTTTCTC	0.343													84	167					0	0	1	0	0	
SNX29	92017	broad.mit.edu	37	16	12293490	12293490	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:12293490A>C	uc002dby.3	+	7	529	c.473A>C	c.(472-474)AAA>ACA	p.K158T	SNX29_uc010uyx.1_Missense_Mutation_p.K185T	NM_001080530	NP_001073999	Q8TEQ0	SNX29_HUMAN	sorting nexin 29	158	Potential.				cell communication		phosphatidylinositol binding			ovary(1)	1						CAACTGAAGAAATATGTAGGA	0.478													6	15					0	0	1	0	0	
CPPED1	55313	broad.mit.edu	37	16	12758897	12758897	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:12758897G>T	uc002dca.3	-	4	902	c.791C>A	c.(790-792)TCA>TAA	p.S264*	CPPED1_uc002dcb.3_Nonsense_Mutation_p.S122*|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	264							hydrolase activity|metal ion binding				0						AATGGCAGATGACACCACCAT	0.547													32	53					3.80469e-20	4.48655e-20	1	1	0	
CPPED1	55313	broad.mit.edu	37	16	12798748	12798748	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:12798748A>G	uc002dca.3	-	3	559	c.448T>C	c.(448-450)TAC>CAC	p.Y150H	CPPED1_uc002dcb.3_Intron|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	150							hydrolase activity|metal ion binding				0						AAGCTGAAGTAGTCATCTCCC	0.612													33	50					0	0	1	0	0	
ERCC4	2072	broad.mit.edu	37	16	14029335	14029335	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:14029335C>T	uc002dce.2	+	8	1555	c.1546C>T	c.(1546-1548)CGA>TGA	p.R516*	ERCC4_uc010uyz.1_Nonsense_Mutation_p.R66*	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	516					double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						AGGATATCGTCGAGAAATAAG	0.413			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				26	52					0	0	1	0	0	
MKL2	57496	broad.mit.edu	37	16	14307444	14307444	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:14307444C>T	uc010uza.1	+	6	474	c.319C>T	c.(319-321)CGT>TGT	p.R107C	MKL2_uc002dcg.2_Missense_Mutation_p.R107C|MKL2_uc002dch.2_Missense_Mutation_p.R96C|MKL2_uc010uzb.1_Missense_Mutation_p.R56C	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	96	RPEL 2.				cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						TCGACCAGATCGTTCTGAACT	0.294													33	64					0	0	1	0	0	
PARN	5073	broad.mit.edu	37	16	14711452	14711452	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:14711452C>T	uc010uzd.1	-	6	525	c.383G>A	c.(382-384)CGA>CAA	p.R128Q	PARN_uc010uzc.1_Missense_Mutation_p.R67Q|PARN_uc010uze.1_Missense_Mutation_p.R82Q|PARN_uc010uzf.1_Intron|PARN_uc010uzg.1_RNA	NM_002582	NP_002573	O95453	PARN_HUMAN	poly(A)-specific ribonuclease (deadenylation	128					female gamete generation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|RNA modification	cytosol|nucleolus	metal ion binding|mRNA 3'-UTR binding|nucleotide binding|poly(A)-specific ribonuclease activity|protein binding			ovary(2)	2						CTTACCATTTCGAAAAACTTT	0.363													13	26					0	0	1	0	0	
BFAR	51283	broad.mit.edu	37	16	14755907	14755907	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:14755907C>T	uc002dco.2	+	6	1223	c.942C>T	c.(940-942)ATC>ATT	p.I314I	BFAR_uc002dcp.2_Silent_p.I189I|BFAR_uc010uzh.1_Silent_p.I186I	NM_016561	NP_057645	Q9NZS9	BFAR_HUMAN	bifunctional apoptosis regulator	314	Lumenal (Potential).				anti-apoptosis|apoptosis	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	structural molecule activity|zinc ion binding			ovary(1)|skin(1)	2						GGGAGGACATCGTCACCAAGC	0.498													74	119					0	0	1	0	0	
NOMO1	23420	broad.mit.edu	37	16	14983060	14983060	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:14983060T>G	uc002dcv.2	+	29	3498	c.3432T>G	c.(3430-3432)ATT>ATG	p.I1144M		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	1144	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						TCACCTTGATTTTTAATCCCA	0.318													98	154					0	0	1	0	0	
NDE1	54820	broad.mit.edu	37	16	15781232	15781232	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:15781232C>T	uc002ddt.1	+	4	430	c.387C>T	c.(385-387)CGC>CGT	p.R129R	NDE1_uc010uzy.1_Silent_p.R129R|NDE1_uc002dds.2_Silent_p.R129R|NDE1_uc002ddu.1_Silent_p.S66S	NM_017668	NP_060138	Q9NXR1	NDE1_HUMAN	nuclear distribution gene E homolog 1	129	Interaction with PAFAH1B1 (By similarity).|Potential.				cell differentiation|cell division|centrosome duplication|establishment of chromosome localization|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|mitotic prometaphase|nervous system development	cleavage furrow|condensed chromosome kinetochore|cytosol|microtubule|spindle pole centrosome	microtubule binding			ovary(1)	1						TCTTCGCCAGCGCCACGATCA	0.458													27	42					0	0	1	0	0	
MYH11	4629	broad.mit.edu	37	16	15835523	15835523	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:15835523T>C	uc002ddy.2	-	22	2763	c.2656A>G	c.(2656-2658)ACC>GCC	p.T886A	MYH11_uc002ddv.2_Missense_Mutation_p.T893A|MYH11_uc002ddw.2_Missense_Mutation_p.T886A|MYH11_uc002ddx.2_Missense_Mutation_p.T893A|MYH11_uc010bvg.2_Missense_Mutation_p.T718A	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	886	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						TTCTCCTCGGTCAGCTGCACG	0.637			T	CBFB	AML								45	114					0	0	1	0	0	
MYH11	4629	broad.mit.edu	37	16	15880505	15880505	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:15880505C>A	uc002ddy.2	-	5	722	c.615G>T	c.(613-615)AAG>AAT	p.K205N	MYH11_uc002ddv.2_Missense_Mutation_p.K205N|MYH11_uc002ddw.2_Missense_Mutation_p.K205N|MYH11_uc002ddx.2_Missense_Mutation_p.K205N|MYH11_uc010bvg.2_Nonsense_Mutation_p.E31*|MYH11_uc002deb.3_Missense_Mutation_p.K205N	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	205	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						TTGTGTCTTTCTTGCCCTTGT	0.537			T	CBFB	AML								14	21					3.27435e-08	3.46512e-08	1	1	0	
ABCC6P1	653190	broad.mit.edu	37	16	18597204	18597204	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:18597204G>T	uc002dfg.2	+	7	768	c.568G>T	c.(568-570)GAA>TAA	p.E190*	ABCC6P1_uc010vam.1_Nonsense_Mutation_p.E133*	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						CTCCTCAGAAGAACTTGTTTC	0.552													26	16					3.99451e-17	4.61668e-17	1	1	0	
ARL6IP1	23204	broad.mit.edu	37	16	18810043	18810043	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:18810043A>G	uc002dfl.1	-	2	219	c.150T>C	c.(148-150)GGT>GGC	p.G50G	ARL6IP1_uc010van.1_Silent_p.G21G|ARL6IP1_uc010bvz.1_RNA	NM_015161	NP_055976	Q15041	AR6P1_HUMAN	ADP-ribosylation factor-like 6 interacting	50	Helical; (Potential).					integral to membrane	protein binding				0						AAGAAACCACACCCATGATGG	0.428													43	113					0	0	1	0	0	
SMG1	23049	broad.mit.edu	37	16	18841653	18841653	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:18841653C>A	uc002dfm.2	-	52	9194	c.8831G>T	c.(8830-8832)AGA>ATA	p.R2944I	SMG1_uc010bwb.2_Missense_Mutation_p.R2804I|SMG1_uc010bwa.2_Missense_Mutation_p.R1675I	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2944					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TGAACCATTTCTCGGTTGGAT	0.408													22	36					6.21321e-17	7.16882e-17	1	1	0	
SMG1	23049	broad.mit.edu	37	16	18856860	18856860	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:18856860T>C	uc002dfm.2	-	39	6473	c.6110A>G	c.(6109-6111)GAA>GGA	p.E2037G	SMG1_uc010bwb.2_Missense_Mutation_p.E1897G|SMG1_uc010bwa.2_Missense_Mutation_p.E768G|SMG1_uc002dfo.3_Missense_Mutation_p.E335G	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2037					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						AAACCATTTTTCATGAGGTGT	0.468													27	66					0	0	1	0	0	
SMG1	23049	broad.mit.edu	37	16	18880520	18880520	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:18880520C>T	uc002dfm.2	-	20	3102	c.2739G>A	c.(2737-2739)TGG>TGA	p.W913*	SMG1_uc010bwb.2_Nonsense_Mutation_p.W773*	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	913	Interaction with SMG8 and SMG9.				DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TGGCCCACTGCCAAAGGACAG	0.478													27	62					0	0	1	0	0	
C16orf88	400506	broad.mit.edu	37	16	19725601	19725601	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:19725601G>A	uc002dgq.2	-	2	772	c.757C>T	c.(757-759)CCG>TCG	p.P253S	IQCK_uc002dgr.2_5'Flank|IQCK_uc002dgs.2_5'Flank	NM_001012991	NP_001013009	Q1ED39	CP088_HUMAN	hypothetical protein LOC400506	253	Lys-rich.					nucleolus					0						ATGTATTCCGGAGCCTCAACT	0.532													39	69					0	0	1	0	0	
C16orf88	400506	broad.mit.edu	37	16	19726316	19726316	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:19726316C>T	uc002dgq.2	-	2	57	c.42G>A	c.(40-42)GAG>GAA	p.E14E	IQCK_uc002dgr.2_5'Flank|IQCK_uc002dgs.2_5'Flank|IQCK_uc010vat.1_5'Flank|IQCK_uc010bwc.2_5'Flank|IQCK_uc010vau.1_5'Flank	NM_001012991	NP_001013009	Q1ED39	CP088_HUMAN	hypothetical protein LOC400506	14						nucleolus					0						TCTTTTTCTTCTCTGGGAGCC	0.383													29	86					0	0	1	0	0	
GPRC5B	51704	broad.mit.edu	37	16	19883861	19883861	+	Missense_Mutation	SNP	T	C	C	rs11544191		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:19883861T>C	uc002dgt.2	-	2	415	c.307A>G	c.(307-309)ACC>GCC	p.T103A	GPRC5B_uc010vav.1_Missense_Mutation_p.T129A	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	103	Helical; Name=2; (Potential).									lung(1)|breast(1)|skin(1)	3						AGGCCCAGGGTCCCCAGGAGG	0.602													14	26					0	0	1	0	0	
PDILT	204474	broad.mit.edu	37	16	20380850	20380850	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20380850C>A	uc002dhc.1	-	8	1303	c.1080G>T	c.(1078-1080)AAG>AAT	p.K360N		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	360					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						GGCCAAATTTCTTGAGGCTTT	0.438													57	112					1.27862e-28	1.55661e-28	1	1	0	
PDILT	204474	broad.mit.edu	37	16	20384348	20384348	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20384348C>T	uc002dhc.1	-	6	1001	c.778G>A	c.(778-780)GAA>AAA	p.E260K		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	260					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						GTGTTGTATTCGATCACAAAA	0.443													65	111					0	0	1	0	0	
ACSM2A	123876	broad.mit.edu	37	16	20476902	20476902	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20476902T>C	uc010bwe.2	+	4	480	c.241T>C	c.(241-243)TGG>CGG	p.W81R	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.W2R|ACSM2A_uc002dhf.3_Missense_Mutation_p.W81R|ACSM2A_uc002dhg.3_Missense_Mutation_p.W81R|ACSM2A_uc010vay.1_Missense_Mutation_p.W2R	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	81					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GGAATTAATGTGGAATTTCAG	0.587													22	45					0	0	1	0	0	
ACSM2B	348158	broad.mit.edu	37	16	20559486	20559486	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20559486C>A	uc002dhj.3	-	9	1206	c.996G>T	c.(994-996)CAG>CAT	p.Q332H	ACSM2B_uc002dhk.3_Missense_Mutation_p.Q332H|ACSM2B_uc010bwf.1_Missense_Mutation_p.Q332H	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	332					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CGAGGCAGTTCTGTAGATGGG	0.517													76	169					1.7488e-33	2.14946e-33	1	1	0	
ACSM1	116285	broad.mit.edu	37	16	20696520	20696520	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20696520C>T	uc002dhm.1	-	2	466	c.398G>A	c.(397-399)CGA>CAA	p.R133Q	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.R133Q	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	133					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CTGACCTGTTCGCATGCAGCC	0.577													29	57					0	0	1	0	0	
ACSM1	116285	broad.mit.edu	37	16	20696700	20696700	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20696700G>A	uc002dhm.1	-	2	286	c.218C>T	c.(217-219)GCT>GTT	p.A73V	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.A73V	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	73					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CCACCAAAAAGCTGGATTTGG	0.468													51	110					0	0	1	0	0	
ACSM3	6296	broad.mit.edu	37	16	20781488	20781488	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20781488A>C	uc002dhr.2	+	2	319	c.132A>C	c.(130-132)GAA>GAC	p.E44D	ACSM3_uc002dhq.2_Missense_Mutation_p.E44D|ACSM3_uc010vba.1_Missense_Mutation_p.E36D	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	44					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						CCAACTATGAATCCATGAAAC	0.438													27	76					0	0	1	0	0	
LOC81691	81691	broad.mit.edu	37	16	20851123	20851123	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20851123T>G	uc002dhv.2	+	14	1693	c.1430T>G	c.(1429-1431)ATT>AGT	p.I477S	ERI2_uc002dht.3_Intron|LOC81691_uc002dhx.2_Missense_Mutation_p.I477S|LOC81691_uc002dhw.2_Missense_Mutation_p.I220S|LOC81691_uc002dhy.3_Missense_Mutation_p.I477S	NM_030941	NP_112203	Q96IC2	REXON_HUMAN	exonuclease NEF-sp isoform 1	477						nucleolus	exonuclease activity|nucleotide binding|RNA binding			ovary(1)|kidney(1)	2						CCCTTCAGCATTGTTCAGTTC	0.448													87	197					0	0	1	0	0	
LOC81691	81691	broad.mit.edu	37	16	20851723	20851723	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20851723C>T	uc002dhv.2	+	15	1822	c.1559C>T	c.(1558-1560)GCT>GTT	p.A520V	ERI2_uc002dht.3_Intron|LOC81691_uc002dhx.2_Missense_Mutation_p.A520V|LOC81691_uc002dhw.2_Missense_Mutation_p.A263V|LOC81691_uc002dhy.3_Missense_Mutation_p.A520V	NM_030941	NP_112203	Q96IC2	REXON_HUMAN	exonuclease NEF-sp isoform 1	520	RRM 1.					nucleolus	exonuclease activity|nucleotide binding|RNA binding			ovary(1)|kidney(1)	2						AATCTCAGGGCTCTGAAGAGG	0.408													47	83					0	0	1	0	0	
DNAH3	55567	broad.mit.edu	37	16	20974776	20974776	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20974776C>T	uc010vbe.1	-	53	10430	c.10430G>A	c.(10429-10431)CGA>CAA	p.R3477Q	DNAH3_uc010vbd.1_Missense_Mutation_p.R912Q	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3477					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCGCAAACATCGAAGGATCAC	0.527													24	42					0	0	1	0	0	
DNAH3	55567	broad.mit.edu	37	16	20975792	20975792	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20975792G>A	uc010vbe.1	-	53	9414	c.9414C>T	c.(9412-9414)ATC>ATT	p.I3138I	DNAH3_uc010vbd.1_Silent_p.I573I	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3138	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGATAGGTTCGATAGAAGCAT	0.428													72	154					0	0	1	0	0	
DNAH3	55567	broad.mit.edu	37	16	20976341	20976341	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20976341T>G	uc010vbe.1	-	53	8865	c.8865A>C	c.(8863-8865)GAA>GAC	p.E2955D	DNAH3_uc010vbd.1_Missense_Mutation_p.E390D	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2955	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTTCAATGTTTTCCTCCAAGT	0.512													76	141					0	0	1	0	0	
DNAH3	55567	broad.mit.edu	37	16	20976706	20976706	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20976706G>T	uc010vbe.1	-	53	8500	c.8500C>A	c.(8500-8502)CTT>ATT	p.L2834I	DNAH3_uc010vbd.1_Missense_Mutation_p.L269I	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2834	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGATCCCCAAGAATCTTTTTG	0.403													40	82					1.59932e-28	1.94589e-28	1	1	0	
DNAH3	55567	broad.mit.edu	37	16	20996988	20996988	+	Missense_Mutation	SNP	C	T	T	rs150141933		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20996988C>T	uc010vbe.1	-	48	7076	c.7076G>A	c.(7075-7077)CGA>CAA	p.R2359Q	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2359					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GAAGAGGCTTCGAATGTTATC	0.453													52	109					0	0	1	0	0	
DNAH3	55567	broad.mit.edu	37	16	20999312	20999312	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:20999312G>A	uc010vbe.1	-	45	6677	c.6677C>T	c.(6676-6678)TCG>TTG	p.S2226L	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2226	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GTCAACAATCGAACTGAAAAT	0.428													34	65					0	0	1	0	0	
DNAH3	55567	broad.mit.edu	37	16	21136675	21136675	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:21136675C>T	uc010vbe.1	-	9	1225	c.1225G>A	c.(1225-1227)GCC>ACC	p.A409T	DNAH3_uc002die.2_Missense_Mutation_p.A380T	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	409	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AAAAGCTGGGCGCAGGTGGGG	0.522													24	52					0	0	1	0	0	
ZP2	7783	broad.mit.edu	37	16	21210159	21210159	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:21210159T>C	uc002dii.2	-	17	1952	c.1952A>G	c.(1951-1953)AAA>AGA	p.K651R	ZP2_uc010bwn.1_Missense_Mutation_p.K681R	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	651	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		GACTGTCATTTTCTCTGCTTC	0.488													12	29					0	0	1	0	0	
ZP2	7783	broad.mit.edu	37	16	21213314	21213314	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:21213314C>T	uc002dii.2	-	12	1318	c.1318G>A	c.(1318-1320)GAA>AAA	p.E440K	ZP2_uc010bwn.1_Missense_Mutation_p.E479K	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	440	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		GCATGTATTTCGTTTTCATAG	0.393													34	77					0	0	1	0	0	
OTOA	146183	broad.mit.edu	37	16	21698929	21698929	+	Missense_Mutation	SNP	C	T	T	rs148114778		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:21698929C>T	uc002djh.2	+	7	596	c.595C>T	c.(595-597)CGG>TGG	p.R199W	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.R120W	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	199					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		CATCACAGAGCGGCTCCCTCG	0.473													19	56					0	0	1	0	0	
UQCRC2	7385	broad.mit.edu	37	16	21994445	21994445	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:21994445G>A	uc002djx.2	+	14	1451	c.1315G>A	c.(1315-1317)GCA>ACA	p.A439T	UQCRC2_uc002djy.2_Nonsense_Mutation_p.W387*|UQCRC2_uc010bxa.2_RNA	NM_003366	NP_003357	P22695	QCR2_HUMAN	ubiquinol-cytochrome c reductase core protein II	439					aerobic respiration|oxidative phosphorylation|proteolysis|respiratory electron transport chain|transport		metalloendopeptidase activity|zinc ion binding			large_intestine(2)	2				GBM - Glioblastoma multiforme(48;0.0264)		GAAGTCAATGGCAGCAAGTGG	0.388													15	76					0	0	1	0	0	
VWA3A	146177	broad.mit.edu	37	16	22142928	22142928	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:22142928C>T	uc010vbq.1	+	19	1846	c.1750C>T	c.(1750-1752)CGG>TGG	p.R584W	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Missense_Mutation_p.R592W	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	584	VWFA 1.					extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		CCTGCGGTGTCGGGGCAGCAG	0.587													9	16					0	0	1	0	0	
VWA3A	146177	broad.mit.edu	37	16	22149750	22149750	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:22149750G>T	uc010vbq.1	+	22	2305	c.2209G>T	c.(2209-2211)GAA>TAA	p.E737*	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Nonsense_Mutation_p.E745*	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	737						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		CCTCCCGAAAGAAAAACCAAA	0.567													7	12					1.6384e-10	1.78173e-10	1	1	0	
VWA3A	146177	broad.mit.edu	37	16	22151506	22151506	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:22151506G>A	uc010vbq.1	+	23	2420	c.2324G>A	c.(2323-2325)AGC>AAC	p.S775N	VWA3A_uc010bxd.2_RNA	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	775						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		AGAGAGAAGAGCCCCCCGCTG	0.532													20	24					0	0	1	0	0	
CDR2	1039	broad.mit.edu	37	16	22361162	22361162	+	Silent	SNP	C	T	T	rs145559710		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:22361162C>T	uc002dkn.2	-	3	509	c.201G>A	c.(199-201)ACG>ACA	p.T67T		NM_001802	NP_001793	Q01850	CDR2_HUMAN	cerebellar degeneration-related protein 2	67	Potential.					nucleus	protein binding			skin(1)	1				GBM - Glioblastoma multiforme(48;0.0188)		CCACTTGCTTCGTCAGATACT	0.343													49	83					0	0	1	0	0	
HS3ST2	9956	broad.mit.edu	37	16	22926592	22926592	+	Silent	SNP	C	T	T	rs144169281		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:22926592C>T	uc002dli.2	+	2	885	c.813C>T	c.(811-813)TTC>TTT	p.F271F	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	271	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		AGATTCACTTCGTCAGTGGCG	0.582													59	127					0	0	1	0	0	
USP31	57478	broad.mit.edu	37	16	23080168	23080168	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:23080168C>T	uc002dll.2	-	16	3258	c.3258G>A	c.(3256-3258)CGG>CGA	p.R1086R	USP31_uc002dlk.2_Silent_p.R358R|USP31_uc010vca.1_Silent_p.R389R|USP31_uc010bxm.2_Silent_p.R374R	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	1086	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		GGGATGAATGCCGTCCACTGC	0.547													38	87					0	0	1	0	0	
USP31	57478	broad.mit.edu	37	16	23091492	23091492	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:23091492C>A	uc002dll.2	-	13	1951	c.1951G>T	c.(1951-1953)GAA>TAA	p.E651*	USP31_uc010bxm.2_5'UTR	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	651					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		CTGTCTCCTTCCTGTTGCAAG	0.478													22	41					7.45023e-12	8.20436e-12	1	1	0	
SCNN1B	6338	broad.mit.edu	37	16	23391835	23391835	+	Missense_Mutation	SNP	G	A	A	rs112069765		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:23391835G>A	uc002dln.2	+	13	1812	c.1636G>A	c.(1636-1638)GAC>AAC	p.D546N		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	546	Cytoplasmic (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	GATCATCATCGACTTTGTGTG	0.617													86	138					0	0	1	0	0	
UBFD1	56061	broad.mit.edu	37	16	23569435	23569435	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:23569435G>A	uc002dlv.2	+	2	392	c.190G>A	c.(190-192)GAC>AAC	p.D64N	EARS2_uc002dls.3_5'Flank|EARS2_uc002dlt.3_5'Flank|EARS2_uc002dlu.2_5'Flank	NM_019116	NP_061989	O14562	UBFD1_HUMAN	ubiquitin-binding protein homolog	64											0				GBM - Glioblastoma multiforme(48;0.0331)		GCCCCCTGGGGACCCCGCAGC	0.627													6	10					0	0	1	0	0	
PLK1	5347	broad.mit.edu	37	16	23690463	23690463	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:23690463C>T	uc002dlz.1	+	1	263	c.210C>T	c.(208-210)ATC>ATT	p.I70I		NM_005030	NP_005021	P53350	PLK1_HUMAN	polo-like kinase 1	70	Protein kinase.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G2/M transition DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic prophase|negative regulation of cyclin-dependent protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|protein localization to chromatin|protein ubiquitination|regulation of mitotic anaphase|regulation of protein binding	centrosome|condensed nuclear chromosome outer kinetochore|cytosol|nucleoplasm|spindle microtubule|spindle midzone|spindle pole	anaphase-promoting complex binding|ATP binding|polo kinase kinase activity|protein kinase binding			lung(1)|skin(1)	2				GBM - Glioblastoma multiforme(48;0.0156)		GCTTCGAGATCTCGGACGCGG	0.602													7	17					0	0	1	0	0	
RBBP6	5930	broad.mit.edu	37	16	24552030	24552030	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:24552030A>C	uc002dmh.2	+	1	1123	c.83A>C	c.(82-84)GAC>GCC	p.D28A	RBBP6_uc010vcb.1_Intron|RBBP6_uc002dmg.2_Missense_Mutation_p.D28A|RBBP6_uc002dmi.2_Missense_Mutation_p.D28A|RBBP6_uc010bxr.2_Missense_Mutation_p.D28A	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	28	DWNN.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		TCCCTCTGCGACTTAAAGAAG	0.493													33	69					0	0	1	0	0	
RBBP6	5930	broad.mit.edu	37	16	24578677	24578677	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:24578677T>C	uc002dmh.2	+	15	2843	c.1803T>C	c.(1801-1803)CCT>CCC	p.P601P	RBBP6_uc010vcb.1_Silent_p.P468P|RBBP6_uc002dmi.2_Silent_p.P601P|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Silent_p.P468P	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	601					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		GTGTCCCTCCTCCAGGGTTTC	0.363													126	223					0	0	1	0	0	
TNRC6A	27327	broad.mit.edu	37	16	24802647	24802647	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:24802647C>A	uc002dmm.2	+	6	2798	c.2684C>A	c.(2683-2685)TCT>TAT	p.S895Y	TNRC6A_uc010bxs.2_Missense_Mutation_p.S642Y|TNRC6A_uc010vcc.1_Missense_Mutation_p.S642Y|TNRC6A_uc002dmn.2_Missense_Mutation_p.S642Y|TNRC6A_uc002dmo.2_Missense_Mutation_p.S642Y	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	895	Sufficient for interaction with EIF2C1 and EIF2C4.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		AAAACTAGTTCTTTCACTTGG	0.453													35	63					2.42023e-17	2.79957e-17	1	1	0	
TNRC6A	27327	broad.mit.edu	37	16	24803039	24803039	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:24803039G>A	uc002dmm.2	+	6	3190	c.3076G>A	c.(3076-3078)GTC>ATC	p.V1026I	TNRC6A_uc010bxs.2_Missense_Mutation_p.V773I|TNRC6A_uc010vcc.1_Missense_Mutation_p.V773I|TNRC6A_uc002dmn.2_Missense_Mutation_p.V773I|TNRC6A_uc002dmo.2_Missense_Mutation_p.V773I	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	1026	Sufficient for interaction with EIF2C1 and EIF2C4.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		GAACAAAAACGTCCCAAATGG	0.463													25	38					0	0	1	0	0	
IL21R	50615	broad.mit.edu	37	16	27460524	27460524	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:27460524G>A	uc002doq.1	+	9	1770	c.1537G>A	c.(1537-1539)GAA>AAA	p.E513K	IL21R_uc002dor.1_Missense_Mutation_p.E513K|IL21R_uc002dos.1_Missense_Mutation_p.E513K|uc002dot.2_RNA	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	513	Cytoplasmic (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						CCCCGGGGACGAAGGACCCCC	0.637			T	BCL6	NHL								20	53					0	0	1	0	0	
KIAA0556	23247	broad.mit.edu	37	16	27772749	27772749	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:27772749T>C	uc002dow.2	+	19	3671	c.3647T>C	c.(3646-3648)TTC>TCC	p.F1216S		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1216										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						CAGCTGAATTTCACTGCCTCC	0.567													20	50					0	0	1	0	0	
GSG1L	146395	broad.mit.edu	37	16	27818854	27818854	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:27818854G>A	uc002doz.2	-	6	937	c.852C>T	c.(850-852)AGC>AGT	p.S284S	GSG1L_uc010bya.1_Silent_p.S233S|GSG1L_uc010bxz.1_Silent_p.S147S|GSG1L_uc002doy.2_Silent_p.S129S	NM_001109763	NP_001103233	Q6UXU4	GSG1L_HUMAN	GSG1-like isoform 1	284						integral to membrane				ovary(1)	1						AGTCCTCCTCGCTCCCGTCCC	0.498													17	25					0	0	1	0	0	
CD19	930	broad.mit.edu	37	16	28946860	28946860	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:28946860C>A	uc002drs.2	+	5	993	c.931C>A	c.(931-933)CTT>ATT	p.L311I	uc010vct.1_Intron|CD19_uc010byo.1_Missense_Mutation_p.L311I	NM_001770	NP_001761	P15391	CD19_HUMAN	CD19 antigen precursor	311	Helical; (Potential).				cellular defense response	external side of plasma membrane|integral to plasma membrane	protein binding|receptor signaling protein activity			ovary(2)|central_nervous_system(1)	3						TGTGGGCATTCTTCATCTTCA	0.532													13	36					4.3838e-07	4.58765e-07	1	1	0	
CD19	930	broad.mit.edu	37	16	28947495	28947495	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:28947495G>T	uc002drs.2	+	6	1030	c.968G>T	c.(967-969)AGA>ATA	p.R323I	uc010vct.1_Intron|CD19_uc010byo.1_Missense_Mutation_p.R323I	NM_001770	NP_001761	P15391	CD19_HUMAN	CD19 antigen precursor	323	Cytoplasmic (Potential).				cellular defense response	external side of plasma membrane|integral to plasma membrane	protein binding|receptor signaling protein activity			ovary(2)|central_nervous_system(1)	3						AGGAGGAAAAGAAAGCGAATG	0.522													22	39					2.70639e-06	2.81248e-06	1	1	0	
C16orf54	283897	broad.mit.edu	37	16	29755699	29755699	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:29755699G>A	uc002dtp.2	-	2	683	c.574C>T	c.(574-576)CCA>TCA	p.P192S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|uc002dtq.1_5'Flank	NM_175900	NP_787096	Q6UWD8	CP054_HUMAN	hypothetical protein LOC283897	192						integral to membrane					0						GGGCTCCCTGGCCGCTGCCTC	0.692													5	8					0	0	1	0	0	
TAOK2	9344	broad.mit.edu	37	16	29994826	29994826	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:29994826C>T	uc002dva.1	+	13	2046	c.1263C>T	c.(1261-1263)GGC>GGT	p.G421G	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Silent_p.G421G|TAOK2_uc002dvc.1_Silent_p.G421G|TAOK2_uc010bzm.1_Silent_p.G428G|TAOK2_uc002dvd.1_Silent_p.G248G	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	421					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						CCCTCTAGGGCTCTGACAACC	0.592													157	261					0	0	1	0	0	
ITGAL	3683	broad.mit.edu	37	16	30522424	30522424	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:30522424C>A	uc002dyi.3	+	24	2929	c.2753C>A	c.(2752-2754)CCC>CAC	p.P918H	ITGAL_uc002dyj.3_Missense_Mutation_p.P834H|ITGAL_uc010vev.1_Missense_Mutation_p.P152H	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	918	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	ACCATCATCCCCATCCTGTAC	0.582													34	91					1.836e-18	2.1465e-18	1	1	0	
SRCAP	10847	broad.mit.edu	37	16	30731499	30731499	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:30731499G>A	uc002dze.1	+	19	3219	c.2834G>A	c.(2833-2835)CGA>CAA	p.R945Q	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.R802Q|SRCAP_uc010bzz.1_Missense_Mutation_p.R515Q	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	945					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GACATGGGTCGATTTGACCTT	0.363													106	243					0	0	1	0	0	
ITGAM	3684	broad.mit.edu	37	16	31277142	31277142	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:31277142G>A	uc002ebq.2	+	4	347	c.249G>A	c.(247-249)GAG>GAA	p.E83E	ITGAM_uc002ebr.2_Silent_p.E83E	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	83	FG-GAP 2.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						TCCCCGTGGAGGCCGTGAACA	0.657													19	21					0	0	1	0	0	
ITGAM	3684	broad.mit.edu	37	16	31282341	31282341	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:31282341A>C	uc002ebq.2	+	6	592	c.494A>C	c.(493-495)GAC>GCC	p.D165A	ITGAM_uc002ebr.2_Missense_Mutation_p.D165A	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	165	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						ATCCCACATGACTTTCGGCGG	0.478													78	138					0	0	1	0	0	
ITGAX	3687	broad.mit.edu	37	16	31382767	31382767	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:31382767T>C	uc002ebu.1	+	16	2021	c.1954T>C	c.(1954-1956)TCC>CCC	p.S652P	ITGAX_uc002ebt.2_Missense_Mutation_p.S652P	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	652	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCTGGTACAGTCCAACATCTG	0.587													24	43					0	0	1	0	0	
ITGAX	3687	broad.mit.edu	37	16	31391336	31391336	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:31391336G>A	uc002ebu.1	+	26	3077	c.3010G>A	c.(3010-3012)GCA>ACA	p.A1004T	ITGAX_uc002ebt.2_Missense_Mutation_p.A1004T	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	1004	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGAGAAAATCGCACCCCCAGC	0.577													26	47					0	0	1	0	0	
ITGAD	3681	broad.mit.edu	37	16	31405651	31405651	+	Silent	SNP	C	T	T	rs140142659	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:31405651C>T	uc002ebv.1	+	2	175	c.126C>T	c.(124-126)TTC>TTT	p.F42F	ITGAD_uc010vfl.1_Silent_p.F42F|ITGAD_uc010cap.1_Silent_p.F42F	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	42	Extracellular (Potential).|FG-GAP 1.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						TGGTGCAGTTCGGTGGATCTC	0.587													12	32					0	0	1	0	0	
C16orf58	64755	broad.mit.edu	37	16	31504366	31504366	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:31504366G>T	uc002eci.1	-	10	1032	c.1020C>A	c.(1018-1020)GTC>GTA	p.V340V	C16orf58_uc002ech.1_Silent_p.V78V	NM_022744	NP_073581	Q96GQ5	CP058_HUMAN	hypothetical protein LOC64755	340						integral to membrane				ovary(1)|breast(1)	2						GCAGCTCAAAGACACTGTGGG	0.577													10	23					0.0581538	0.0584033	1	1	0	
AHSP	51327	broad.mit.edu	37	16	31539893	31539894	+	Missense_Mutation	DNP	GA	TG	TG			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:31539893_31539894GA>TG	uc002ecj.2	+	3	275_276	c.190_191GA>TG	c.(190-192)GAC>TGC	p.D64C		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	64					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						CCAAGAGCGAGACAAGGCTCTG	0.545													18	55					0	0	1	0	0	
ZNF267	10308	broad.mit.edu	37	16	31927273	31927273	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:31927273G>A	uc002ecs.3	+	4	1912	c.1703G>A	c.(1702-1704)CGA>CAA	p.R568Q		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	568	C2H2-type 9.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						CGACATCATCGAATTCATACT	0.388													23	43					0	0	1	0	0	
MIR1826	100302162	broad.mit.edu	37	16	33965525	33965525	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:33965525C>T	hsa-mir-1826|MI0008194	+			c.18C>T																				0						ATCGACACTTCGAACGCAATT	0.572													16	35					0	0	1	0	0	
SHCBP1	79801	broad.mit.edu	37	16	46633805	46633805	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:46633805C>T	uc002eec.3	-	9	1323	c.1283G>A	c.(1282-1284)GGT>GAT	p.G428D		NM_024745	NP_079021	Q8NEM2	SHCBP_HUMAN	SHC SH2-domain binding protein 1	428	PbH1 1.									ovary(1)|breast(1)	2		all_cancers(37;0.00404)|all_epithelial(9;0.00527)|all_lung(18;0.0413)|Lung NSC(13;0.213)				AATATCAGCACCAGTGCAGTC	0.393													23	30					0	0	1	0	0	
MYLK3	91807	broad.mit.edu	37	16	46766221	46766221	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:46766221C>T	uc002eei.3	-	4	1477	c.1361G>A	c.(1360-1362)GGA>GAA	p.G454E	MYLK3_uc010vge.1_Missense_Mutation_p.G113E|MYLK3_uc002eej.1_Missense_Mutation_p.G113E	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	454					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CTCAGGGTTTCCCGCCCCTGG	0.672													25	57					0	0	1	0	0	
NETO2	81831	broad.mit.edu	37	16	47162324	47162324	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:47162324T>C	uc002eer.1	-	4	778	c.393A>G	c.(391-393)AGA>AGG	p.R131R	NETO2_uc010vgf.1_5'UTR|NETO2_uc002ees.1_Silent_p.R131R	NM_018092	NP_060562	Q8NC67	NETO2_HUMAN	neuropilin- and tolloid-like protein 2	131	Extracellular (Potential).|CUB 1.					integral to membrane	receptor activity				0		all_cancers(37;0.00114)|all_lung(18;0.00432)|Lung NSC(13;0.0384)|Breast(268;0.174)				TCCCTGTTGATCTAATTAATG	0.398										HNSCC(25;0.065)			52	97					0	0	1	0	0	
NETO2	81831	broad.mit.edu	37	16	47163219	47163219	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:47163219G>A	uc002eer.1	-	3	533	c.148C>T	c.(148-150)CGA>TGA	p.R50*	NETO2_uc010vgf.1_5'Flank|NETO2_uc002ees.1_Nonsense_Mutation_p.R50*	NM_018092	NP_060562	Q8NC67	NETO2_HUMAN	neuropilin- and tolloid-like protein 2	50	Extracellular (Potential).|CUB 1.					integral to membrane	receptor activity				0		all_cancers(37;0.00114)|all_lung(18;0.00432)|Lung NSC(13;0.0384)|Breast(268;0.174)				TTGCTGGTTCGAACCCAAATG	0.398										HNSCC(25;0.065)			55	113					0	0	1	0	0	
PHKB	5257	broad.mit.edu	37	16	47723014	47723014	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:47723014A>T	uc002eev.3	+	27	2745	c.2693A>T	c.(2692-2694)GAC>GTC	p.D898V	PHKB_uc002eeu.3_Missense_Mutation_p.D891V|PHKB_uc002eew.3_Missense_Mutation_p.D139V	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	898					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				CCAGCCTTGGACTTGTATCAG	0.463													28	76					0	0	1	0	0	
ABCC12	94160	broad.mit.edu	37	16	48122497	48122497	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:48122497T>G	uc002efc.1	-	24	3780	c.3434A>C	c.(3433-3435)CAA>CCA	p.Q1145P	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1145	ABC transporter 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				CTGCCCACTTTGTATGTTCAA	0.488													30	56					0	0	1	0	0	
ABCC12	94160	broad.mit.edu	37	16	48167666	48167666	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:48167666A>G	uc002efc.1	-	7	1406	c.1060T>C	c.(1060-1062)TCC>CCC	p.S354P	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.S354P|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	354	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				GCTATGGTGGACACGATGGGG	0.498													22	46					0	0	1	0	0	
ABCC11	85320	broad.mit.edu	37	16	48226615	48226615	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:48226615C>T	uc002eff.1	-	19	2872	c.2522G>A	c.(2521-2523)CGA>CAA	p.R841Q	ABCC11_uc002efg.1_Missense_Mutation_p.R841Q|ABCC11_uc002efh.1_Missense_Mutation_p.R841Q|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	841	ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				ATTGCTCTCTCGGCTGCTATT	0.562									Cerumen_Type				32	56					0	0	1	0	0	
ABCC11	85320	broad.mit.edu	37	16	48249223	48249223	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:48249223C>T	uc002eff.1	-	7	1334	c.984G>A	c.(982-984)CAG>CAA	p.Q328Q	ABCC11_uc002efg.1_Silent_p.Q328Q|ABCC11_uc002efh.1_Silent_p.Q328Q|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	328	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				ATGTGTGATGCTGAGCCTTCA	0.473									Cerumen_Type				37	65					0	0	1	0	0	
ABCC11	85320	broad.mit.edu	37	16	48265757	48265757	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:48265757C>A	uc002eff.1	-	1	426	c.76G>T	c.(76-78)GAC>TAC	p.D26Y	ABCC11_uc002efg.1_Missense_Mutation_p.D26Y|ABCC11_uc002efh.1_Missense_Mutation_p.D26Y|ABCC11_uc010vgl.1_Missense_Mutation_p.D26Y	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	26	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GAAACCATGTCATCGCCTATG	0.448									Cerumen_Type				61	106					1.40369e-38	1.73832e-38	1	1	0	
LONP2	83752	broad.mit.edu	37	16	48381506	48381506	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:48381506G>A	uc002efi.1	+	13	2116	c.2027G>A	c.(2026-2028)CGA>CAA	p.R676Q	LONP2_uc010vgm.1_RNA|LONP2_uc002efj.1_Missense_Mutation_p.R632Q	NM_031490	NP_113678	Q86WA8	LONP2_HUMAN	peroxisomal LON protease-like	676					misfolded or incompletely synthesized protein catabolic process|protein targeting to peroxisome|signal peptide processing	nucleoid|peroxisomal matrix	ATP binding|ATP-dependent peptidase activity|enzyme binding|sequence-specific DNA binding|serine-type endopeptidase activity				0						GAGGCGAGTCGAATGGATGGC	0.557													37	68					0	0	1	0	0	
ZNF423	23090	broad.mit.edu	37	16	49671572	49671572	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:49671572C>T	uc002efs.2	-	5	1789	c.1491G>A	c.(1489-1491)GAG>GAA	p.E497E	ZNF423_uc010vgn.1_Silent_p.E380E	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	497	C2H2-type 11.			E->A: Abolishes the ability to bind promoter of BMP target genes; when associated with A-420; A-426; A-452; A- 458; A-491; A-528; A-534; A-574 and A- 581.	cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CGCGGATGTGCTCCTGCAGGC	0.547													26	57					0	0	1	0	0	
ZNF423	23090	broad.mit.edu	37	16	49671995	49671995	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:49671995A>C	uc002efs.2	-	5	1366	c.1068T>G	c.(1066-1068)AGT>AGG	p.S356R	ZNF423_uc010vgn.1_Missense_Mutation_p.S239R	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	356					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CAGGGTCGGGACTGACACTGT	0.647													9	26					0	0	1	0	0	
ZNF423	23090	broad.mit.edu	37	16	49764857	49764857	+	Silent	SNP	G	A	A	rs139517505		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:49764857G>A	uc002efs.2	-	4	400	c.102C>T	c.(100-102)TGC>TGT	p.C34C		NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	34					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TTTTCTGATCGCACTCTGGCT	0.493													84	115					0	0	1	0	0	
HEATR3	55027	broad.mit.edu	37	16	50104153	50104153	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:50104153C>T	uc002efw.2	+	4	626	c.464C>T	c.(463-465)TCT>TTT	p.S155F	HEATR3_uc002efx.2_Missense_Mutation_p.S69F	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	155							binding			ovary(1)|skin(1)	2						AACAGAAATTCTATTGAGAAC	0.428													22	46					0	0	1	0	0	
HEATR3	55027	broad.mit.edu	37	16	50112911	50112911	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:50112911C>T	uc002efw.2	+	7	1185	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	HEATR3_uc002efx.2_Silent_p.F255F	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	341							binding			ovary(1)|skin(1)	2						GGAAAACTTTCGTTTCAGATT	0.353													36	79					0	0	1	0	0	
BRD7	29117	broad.mit.edu	37	16	50384079	50384079	+	Splice_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:50384079C>A	uc002egf.1	-	6	514	c.447_splice	c.e6-1	p.R149_splice	BRD7_uc002ege.1_Splice_Site_p.R149_splice	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7						cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				TGGATCTTTTCTGTAAAGATA	0.348													23	34					2.98393e-07	3.12828e-07	1	1	0	
SNX20	124460	broad.mit.edu	37	16	50709814	50709814	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:50709814C>T	uc002egk.2	-	3	322	c.149G>A	c.(148-150)AGC>AAC	p.S50N	SNX20_uc010vgp.1_Missense_Mutation_p.S50N|SNX20_uc002egi.3_Missense_Mutation_p.S50N	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	50					cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						GGAGTTGGAGCTCAGGCCACT	0.562													18	36					0	0	1	0	0	
NOD2	64127	broad.mit.edu	37	16	50759457	50759457	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:50759457G>T	uc002egm.1	+	10	3045	c.2940G>T	c.(2938-2940)AAG>AAT	p.K980N	NOD2_uc010vgq.1_Missense_Mutation_p.K25N	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	980					activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				AAGGACTGAAGAAAAATTCAA	0.423													14	60					2.32078e-09	2.49434e-09	1	1	0	
CYLD	1540	broad.mit.edu	37	16	50784016	50784016	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:50784016G>T	uc002egp.1	+	4	822	c.407G>T	c.(406-408)AGA>ATA	p.R136I	CYLD_uc002egn.1_Missense_Mutation_p.R136I|CYLD_uc002ego.2_Missense_Mutation_p.R136I|CYLD_uc010cbs.1_Missense_Mutation_p.R136I|CYLD_uc002egq.1_Missense_Mutation_p.R136I|CYLD_uc002egr.1_Missense_Mutation_p.R136I|CYLD_uc002egs.1_Missense_Mutation_p.R136I	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	136	Interaction with TRIP.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				GTACAGCTGAGATCTGGGGAA	0.448			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				50	95					2.56175e-15	2.9151e-15	1	1	0	
SALL1	6299	broad.mit.edu	37	16	51173150	51173150	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:51173150G>A	uc010vgs.1	-	2	3014	c.2983C>T	c.(2983-2985)CGG>TGG	p.R995W	SALL1_uc010vgr.1_Missense_Mutation_p.R898W|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	995					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AATTTACCCCGGTCTCTAAAA	0.433													28	69					0	0	1	0	0	
SALL1	6299	broad.mit.edu	37	16	51175943	51175943	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:51175943T>C	uc010vgs.1	-	2	221	c.190A>G	c.(190-192)AAC>GAC	p.N64D	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	64					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TTAGTACAGTTCTTCTTGTGG	0.488													27	132					0	0	1	0	0	
CHD9	80205	broad.mit.edu	37	16	53190731	53190731	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:53190731T>C	uc002ehb.2	+	1	894	c.730T>C	c.(730-732)TGT>CGT	p.C244R	CHD9_uc002egy.2_Missense_Mutation_p.C244R|CHD9_uc002egz.1_Missense_Mutation_p.C244R|CHD9_uc002eha.1_Missense_Mutation_p.C244R|CHD9_uc002ehc.2_Missense_Mutation_p.C244R	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	244	Ser-rich.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				CTTCCACAAGTGTAGCAGTCA	0.373													40	97					0	0	1	0	0	
CHD9	80205	broad.mit.edu	37	16	53302013	53302013	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:53302013G>A	uc002ehb.2	+	21	4856	c.4692G>A	c.(4690-4692)CAG>CAA	p.Q1564Q	CHD9_uc002egy.2_Silent_p.Q1564Q|CHD9_uc002ehc.2_Silent_p.Q1564Q|CHD9_uc002ehf.2_Silent_p.Q678Q|CHD9_uc010cbw.2_5'UTR|CHD9_uc002ehd.2_Silent_p.Q1090Q	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	1564					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				AAGATGGACAGACACGAGAGC	0.338													8	17					0	0	1	0	0	
RBL2	5934	broad.mit.edu	37	16	53504328	53504328	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:53504328T>G	uc002ehi.3	+	16	2397	c.2279T>G	c.(2278-2280)TTC>TGC	p.F760C	RBL2_uc002ehj.2_Missense_Mutation_p.F470C|RBL2_uc010vgw.1_Intron	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	760	Spacer.|Pocket; binds E1A.				cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						ATAACATTCTTCCCTGTCCAA	0.493													16	52					0	0	1	0	0	
AKTIP	64400	broad.mit.edu	37	16	53529195	53529195	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:53529195G>A	uc002ehk.2	-	4	503	c.292C>T	c.(292-294)CCA>TCA	p.P98S	AKTIP_uc002ehl.2_Missense_Mutation_p.P98S|AKTIP_uc002ehm.2_Missense_Mutation_p.P98S|AKTIP_uc010vgx.1_Missense_Mutation_p.P98S	NM_001012398	NP_001012398	Q9H8T0	AKTIP_HUMAN	AKT interacting protein	98					apoptosis|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|positive regulation of protein binding|positive regulation of protein phosphorylation|protein transport	FHF complex|plasma membrane	acid-amino acid ligase activity|protein binding				0		all_cancers(37;0.14)				CGATAAGATGGCTGCACATAG	0.383													15	32					0	0	1	0	0	
RPGRIP1L	23322	broad.mit.edu	37	16	53686692	53686692	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:53686692G>A	uc002ehp.2	-	15	1971	c.1907C>T	c.(1906-1908)GCT>GTT	p.A636V	RPGRIP1L_uc002eho.3_Missense_Mutation_p.A636V|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.A636V|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.A636V|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.A636V	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	636	C2 1.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				ATCATAGAAAGCATAGGTACA	0.368													32	66					0	0	1	0	0	
IRX6	79190	broad.mit.edu	37	16	55363164	55363164	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:55363164C>T	uc002ehy.2	+	5	1807	c.1274C>T	c.(1273-1275)GCG>GTG	p.A425V	IRX6_uc002ehx.2_Missense_Mutation_p.A425V	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	425						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						CTGAACTGTGCGCCGTGCCCG	0.617													39	75					0	0	1	0	0	
LPCAT2	54947	broad.mit.edu	37	16	55562474	55562474	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:55562474G>A	uc002eie.3	+	3	678	c.497G>A	c.(496-498)CGA>CAA	p.R166Q		NM_017839	NP_060309	Q7L5N7	PCAT2_HUMAN	lysophosphatidylcholine acyltransferase 2	166	Lumenal (Potential).				cellular membrane organization|platelet activating factor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|Golgi stack|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding				0						ATGGTATCTCGAAATGAGAAT	0.378													43	90					0	0	1	0	0	
SLC6A2	6530	broad.mit.edu	37	16	55731866	55731866	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:55731866C>T	uc002eif.2	+	10	1429	c.1318C>T	c.(1318-1320)CGA>TGA	p.R440*	SLC6A2_uc010ccd.2_Nonsense_Mutation_p.R440*|SLC6A2_uc002eig.2_Nonsense_Mutation_p.R440*|SLC6A2_uc002eih.2_Nonsense_Mutation_p.R440*|SLC6A2_uc002eii.2_Nonsense_Mutation_p.R335*|SLC6A2_uc002eij.2_Nonsense_Mutation_p.R154*	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	440					synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	GGTCCTGAAGCGACACCGGAA	0.582													28	79					0	0	1	0	0	
CES1	1066	broad.mit.edu	37	16	55844493	55844493	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:55844493G>T	uc002eim.2	-	11	1359	c.1251C>A	c.(1249-1251)TTC>TTA	p.F417L	CES1_uc010ccf.2_Missense_Mutation_p.F92L|CES1_uc002eil.2_Missense_Mutation_p.F418L|CES1_uc002ein.2_Missense_Mutation_p.F416L	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	417				F -> I (in Ref. 19; AAA83932).	response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	TCAAGTCCAGGAACAGGTCTT	0.473													42	237					1.22674e-20	1.44972e-20	1	1	0	
CES1	1066	broad.mit.edu	37	16	55855305	55855305	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:55855305G>A	uc002eim.2	-	5	773	c.665C>T	c.(664-666)GCG>GTG	p.A222V	CES1_uc002eil.2_Missense_Mutation_p.A223V|CES1_uc002ein.2_Missense_Mutation_p.A222V	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	222					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	TTCTCCTCCCGCTGACTCTCC	0.567													18	92					0	0	1	0	0	
CES7	221223	broad.mit.edu	37	16	55886932	55886932	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:55886932C>T	uc002eip.2	-	10	1283	c.1134G>A	c.(1132-1134)CCG>CCA	p.P378P	CES7_uc002eio.2_Silent_p.P378P|CES7_uc002eiq.2_Silent_p.P139P|CES7_uc002eir.2_Silent_p.P272P	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	378						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		AATACTGAGGCGGGATGTGCT	0.383													21	51					0	0	1	0	0	
CES7	221223	broad.mit.edu	37	16	55903558	55903558	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:55903558G>A	uc002eip.2	-	4	665	c.516C>T	c.(514-516)GTC>GTT	p.V172V	CES7_uc002eio.2_Silent_p.V172V|CES7_uc002eiq.2_5'UTR|CES7_uc002eir.2_Silent_p.V66V	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	172						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		GGTACTGGACGACCACAACCA	0.547													10	26					0	0	1	0	0	
BBS2	583	broad.mit.edu	37	16	56534811	56534811	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:56534811A>G	uc002ejd.2	-	11	1586	c.1352T>C	c.(1351-1353)GTC>GCC	p.V451A	BBS2_uc010ccg.2_3'UTR	NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	451					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						ATCCACAGGGACATCTTTGGG	0.488									Bardet-Biedl_syndrome				27	59					0	0	1	0	0	
MT1G	4495	broad.mit.edu	37	16	56700816	56700816	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:56700816G>A	uc002eju.1	-	3	233	c.161C>T	c.(160-162)TCG>TTG	p.S54L	MT1G_uc002ejv.1_RNA|MT1H_uc002ejw.2_5'Flank	NM_005950	NP_005941	P13640	MT1G_HUMAN	metallothionein 1G	55	Alpha.						metal ion binding|protein binding				0						GCACTTCTCCGATGCCCCTTT	0.552													59	93					0	0	1	0	0	
GPR114	221188	broad.mit.edu	37	16	57608945	57608945	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:57608945C>A	uc002elx.3	+	11	1512	c.1427C>A	c.(1426-1428)TCT>TAT	p.S476Y	GPR114_uc010vhr.1_Missense_Mutation_p.L437I|GPR114_uc002ely.2_Missense_Mutation_p.S476Y	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	476	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						GCCTTCTTTTCTTTTGGCGTC	0.617													15	20					1.3612e-06	1.41942e-06	1	1	0	
GPR56	9289	broad.mit.edu	37	16	57684226	57684226	+	Silent	SNP	G	A	A	rs142223451		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:57684226G>A	uc002emb.2	+	3	319	c.27G>A	c.(25-27)ACG>ACA	p.T9T	GPR56_uc002elz.1_Silent_p.T9T|GPR56_uc002ema.1_5'UTR|GPR56_uc002emc.2_Silent_p.T9T|GPR56_uc002emf.2_Silent_p.T9T|GPR56_uc010vhs.1_Silent_p.T9T|GPR56_uc002emd.2_Silent_p.T9T|GPR56_uc002eme.2_Silent_p.T9T|GPR56_uc010vht.1_Silent_p.T9T|GPR56_uc002emg.3_Silent_p.T9T|GPR56_uc010vhu.1_5'UTR	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	9					brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						TGCTGCAGACGACACTGTTCC	0.572													26	63					0	0	1	0	0	
CCDC135	84229	broad.mit.edu	37	16	57735979	57735979	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:57735979G>A	uc002emi.2	+	5	725	c.636G>A	c.(634-636)TCG>TCA	p.S212S	CCDC135_uc002emj.2_Silent_p.S212S|CCDC135_uc002emk.2_Intron	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	212						cytoplasm				central_nervous_system(1)	1						GCTACGGCTCGCTGGACCTGT	0.582													40	61					0	0	1	0	0	
CCDC135	84229	broad.mit.edu	37	16	57741461	57741461	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:57741461G>T	uc002emi.2	+	7	1037	c.948G>T	c.(946-948)GAG>GAT	p.E316D	CCDC135_uc002emj.2_Missense_Mutation_p.E316D|CCDC135_uc002emk.2_Missense_Mutation_p.E251D	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	316						cytoplasm				central_nervous_system(1)	1						AGGTGCCTGAGAACTTCTTCA	0.577													13	38					5.50884e-06	5.70595e-06	1	1	0	
CCDC135	84229	broad.mit.edu	37	16	57762317	57762317	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:57762317G>A	uc002emi.2	+	16	2301	c.2212G>A	c.(2212-2214)GAA>AAA	p.E738K	CCDC135_uc002emj.2_Missense_Mutation_p.E738K|CCDC135_uc002emk.2_Missense_Mutation_p.E673K	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	738						cytoplasm				central_nervous_system(1)	1						CATGATGCACGAAGAGCACCT	0.607													51	69					0	0	1	0	0	
CCDC135	84229	broad.mit.edu	37	16	57764845	57764845	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:57764845G>T	uc002emi.2	+	17	2483	c.2394G>T	c.(2392-2394)GAG>GAT	p.E798D	CCDC135_uc002emj.2_Missense_Mutation_p.E798D|CCDC135_uc002emk.2_Missense_Mutation_p.E733D	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	798	Potential.					cytoplasm				central_nervous_system(1)	1						GACCACAGGAGACCCAGGAGC	0.567													13	73					9.31168e-06	9.63026e-06	1	1	0	
KATNB1	10300	broad.mit.edu	37	16	57789257	57789257	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:57789257G>A	uc002eml.1	+	16	1791	c.1417G>A	c.(1417-1419)GCC>ACC	p.A473T		NM_005886	NP_005877	Q9BVA0	KTNB1_HUMAN	katanin p80 subunit B 1	473	Interaction with KATNA1 and NDEL1 (By similarity).				cell division|mitosis|negative regulation of microtubule depolymerization|positive regulation of microtubule depolymerization|protein targeting	katanin complex|microtubule|spindle pole	microtubule binding|protein heterodimerization activity				0		all_neural(199;0.223)				TCCCACGCAGGCCGTGAAGAT	0.642													19	50					0	0	1	0	0	
C16orf80	29105	broad.mit.edu	37	16	58150852	58150852	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:58150852G>A	uc002enb.1	-	2	365	c.88C>T	c.(88-90)CGG>TGG	p.R30W		NM_013242	NP_037374	Q9Y6A4	CP080_HUMAN	transcription factor IIB	30					multicellular organismal development						0						TGGCCATTCCGTACCTACAAG	0.423													14	43					0	0	1	0	0	
CSNK2A2	1459	broad.mit.edu	37	16	58220746	58220746	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:58220746C>A	uc002enc.2	-	3	373	c.231G>T	c.(229-231)AAG>AAT	p.K77N		NM_001896	NP_001887	P19784	CSK22_HUMAN	casein kinase 2, alpha prime polypeptide	77	Protein kinase.				axon guidance|Wnt receptor signaling pathway	cytosol|nucleus	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			central_nervous_system(1)	1						GTTTTATCTTCTTTTTCTTCA	0.363													37	78					1.69901e-12	1.88238e-12	1	1	0	
PRSS54	221191	broad.mit.edu	37	16	58320087	58320087	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:58320087G>A	uc002enf.2	-	5	671	c.276C>T	c.(274-276)GTC>GTT	p.V92V	PRSS54_uc002eng.2_Silent_p.V92V|PRSS54_uc010vie.1_5'UTR	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	92	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CCACTATAACGACAATGTCCT	0.353													45	98					0	0	1	0	0	
NDRG4	65009	broad.mit.edu	37	16	58538160	58538160	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:58538160C>T	uc002eno.2	+	3	336	c.230C>T	c.(229-231)GCG>GTG	p.A77V	NDRG4_uc002enk.2_Missense_Mutation_p.A109V|NDRG4_uc002enm.2_Missense_Mutation_p.A129V|NDRG4_uc010vif.1_Missense_Mutation_p.A109V|NDRG4_uc010cdk.2_Missense_Mutation_p.A95V|NDRG4_uc010vig.1_Missense_Mutation_p.A107V|NDRG4_uc010vih.1_Missense_Mutation_p.A22V|NDRG4_uc010vii.1_Missense_Mutation_p.A95V|NDRG4_uc002enp.2_Missense_Mutation_p.A77V|NDRG4_uc002enq.1_5'Flank	NM_022910	NP_075061	Q9ULP0	NDRG4_HUMAN	NDRG family member 4 isoform 1	77					cell differentiation|cell growth|multicellular organismal development|response to stress	cytoplasm				skin(1)	1						CAGGTGGGGGCGTCGCAGTTT	0.592													53	91					0	0	1	0	0	
CNOT1	23019	broad.mit.edu	37	16	58581097	58581097	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:58581097C>T	uc002env.2	-	27	4036	c.3743G>A	c.(3742-3744)CGT>CAT	p.R1248H	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.R1243H|CNOT1_uc002enx.2_Missense_Mutation_p.R1248H|CNOT1_uc010vik.1_Missense_Mutation_p.R205H	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1248					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		CACCACACTACGAATGCTAGA	0.338													60	118					0	0	1	0	0	
CNOT1	23019	broad.mit.edu	37	16	58610407	58610407	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:58610407G>T	uc002env.2	-	14	1957	c.1664C>A	c.(1663-1665)GCC>GAC	p.A555D	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.A555D|CNOT1_uc002enx.2_Missense_Mutation_p.A555D|CNOT1_uc002enz.1_5'UTR	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	555					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		AGACAATTTGGCCTGATCATA	0.418													24	53					5.45024e-15	6.18484e-15	1	1	0	
CDH8	1006	broad.mit.edu	37	16	61687875	61687875	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:61687875A>C	uc002eog.1	-	12	2289	c.2037T>G	c.(2035-2037)GCT>GCG	p.A679A		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	679	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		CAATGTCAAAAGCCTCTGTGT	0.398													59	127					0	0	1	0	0	
CDH8	1006	broad.mit.edu	37	16	61747770	61747770	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:61747770C>T	uc002eog.1	-	10	1881	c.1629G>A	c.(1627-1629)CCG>CCA	p.P543P		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	543	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TGGTGAAATTCGGATTGTTGA	0.333													17	40					0	0	1	0	0	
CDH8	1006	broad.mit.edu	37	16	61935262	61935262	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:61935262C>A	uc002eog.1	-	3	620	c.368G>T	c.(367-369)AGA>ATA	p.R123I		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	123	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		CCGGTCAAGTCTTTTTATAGC	0.413													48	58					8.04919e-23	9.61489e-23	1	1	0	
LOC283867	283867	broad.mit.edu	37	16	65319224	65319224	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:65319224A>G	uc010cdo.1	-	6		c.598T>C			LOC283867_uc010cdp.1_RNA|LOC283867_uc002eol.1_RNA					Homo sapiens cDNA clone IMAGE:5276218.												0				OV - Ovarian serous cystadenocarcinoma(108;0.17)		TTTCTGCATGACACTGAGGGA	0.488													5	15					0	0	1	0	0	
DYNC1LI2	1783	broad.mit.edu	37	16	66764102	66764102	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:66764102C>A	uc002eqb.1	-	8	985	c.954G>T	c.(952-954)AAG>AAT	p.K318N	DYNC1LI2_uc010vis.1_Missense_Mutation_p.K241N	NM_006141	NP_006132	O43237	DC1L2_HUMAN	dynein, cytoplasmic, light intermediate	318					transport	centrosome|cytoplasmic dynein complex|microtubule	ATP binding|motor activity			central_nervous_system(3)|skin(1)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0907)|Epithelial(162;0.212)		TAGCTATTTTCTTTTCATTGT	0.423													11	41					1.08611e-07	1.14333e-07	1	1	0	
NAE1	8883	broad.mit.edu	37	16	66842448	66842448	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:66842448G>T	uc002eqf.2	-	17	1383	c.1306C>A	c.(1306-1308)CAT>AAT	p.H436N	NAE1_uc002eqe.2_Missense_Mutation_p.H430N|NAE1_uc002eqg.2_Missense_Mutation_p.H347N|NAE1_uc010cdv.2_Missense_Mutation_p.H439N	NM_003905	NP_003896	Q13564	ULA1_HUMAN	NEDD8 activating enzyme E1 subunit 1 isoform a	436					apoptosis|cell cycle|DNA replication|mitotic cell cycle DNA replication checkpoint|protein neddylation|signal transduction	cytoplasm|insoluble fraction|plasma membrane	catalytic activity|protein heterodimerization activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0914)|Epithelial(162;0.214)	Adenosine triphosphate(DB00171)	TGTTGTTTATGAAATCTATCA	0.303													54	113					1.14385e-22	1.36596e-22	1	1	0	
NAE1	8883	broad.mit.edu	37	16	66844292	66844292	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:66844292C>A	uc002eqf.2	-	15	1212	c.1135G>T	c.(1135-1137)GAA>TAA	p.E379*	NAE1_uc002eqe.2_Nonsense_Mutation_p.E373*|NAE1_uc002eqg.2_Nonsense_Mutation_p.E290*|NAE1_uc010cdv.2_Nonsense_Mutation_p.E382*	NM_003905	NP_003896	Q13564	ULA1_HUMAN	NEDD8 activating enzyme E1 subunit 1 isoform a	379					apoptosis|cell cycle|DNA replication|mitotic cell cycle DNA replication checkpoint|protein neddylation|signal transduction	cytoplasm|insoluble fraction|plasma membrane	catalytic activity|protein heterodimerization activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0914)|Epithelial(162;0.214)	Adenosine triphosphate(DB00171)	AATTTTAATTCTTTCTCTGAA	0.363													37	65					5.71845e-15	6.48651e-15	1	1	0	
PDP2	57546	broad.mit.edu	37	16	66918406	66918406	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:66918406T>G	uc002eqk.1	+	2	381	c.219T>G	c.(217-219)TTT>TTG	p.F73L		NM_020786	NP_065837	Q9P2J9	PDP2_HUMAN	pyruvate dehydrogenase phosphatase isoenzyme 2	73					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity|metal ion binding			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		AAGATGATTTTCACTTGCAAC	0.493													43	88					0	0	1	0	0	
CDH16	1014	broad.mit.edu	37	16	66943282	66943282	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:66943282G>A	uc002eql.2	-	17	2353	c.2280C>T	c.(2278-2280)ATC>ATT	p.I760I	CDH16_uc010cdy.2_Silent_p.I738I|CDH16_uc002eqm.2_Silent_p.I663I	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	760	Extracellular (Potential).|Ectodomain G.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		AGCGACACACGATCACTgagg	0.507													5	16					0	0	1	0	0	
CDH16	1014	broad.mit.edu	37	16	66946441	66946441	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:66946441A>G	uc002eql.2	-	11	1398	c.1325T>C	c.(1324-1326)ATC>ACC	p.I442T	CDH16_uc010cdy.2_Missense_Mutation_p.I442T|CDH16_uc002eqm.2_Missense_Mutation_p.I345T	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	442	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GTGATCATTGATATCTGTGAC	0.592													20	42					0	0	1	0	0	
CDH16	1014	broad.mit.edu	37	16	66949216	66949216	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:66949216G>A	uc002eql.2	-	6	563	c.490C>T	c.(490-492)CGA>TGA	p.R164*	CDH16_uc010cdy.2_Nonsense_Mutation_p.R164*|CDH16_uc002eqm.2_Intron	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	164	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		ATGTGGAATCGAAGATCCGAG	0.617													17	45					0	0	1	0	0	
CES3	23491	broad.mit.edu	37	16	66998542	66998542	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:66998542C>T	uc002eqt.2	+	6	804	c.731C>T	c.(730-732)GCT>GTT	p.A244V	CES3_uc010cdz.2_Missense_Mutation_p.A244V|CES3_uc010cea.2_RNA|CES3_uc010viw.1_5'Flank	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	244						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		TCCCCAGTGGCTGCAGGGCTG	0.617													47	89					0	0	1	0	0	
B3GNT9	84752	broad.mit.edu	37	16	67183690	67183690	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:67183690G>A	uc002erf.2	-	2	1020	c.699C>T	c.(697-699)TTC>TTT	p.F233F	uc002erg.1_Silent_p.T31T	NM_033309	NP_171608	Q6UX72	B3GN9_HUMAN	UDP-GlcNAc:betaGal	233	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0						CCACGTTCACGAACACATCTG	0.587													12	16					0	0	1	0	0	
SLC9A5	6553	broad.mit.edu	37	16	67298957	67298957	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:67298957G>A	uc002esm.2	+	14	2091	c.2028G>A	c.(2026-2028)GCG>GCA	p.A676A	SLC9A5_uc010cee.2_Silent_p.A381A|SLC9A5_uc010vji.1_Silent_p.A180A	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	676					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		ATGGTGTGGCGAATGCTGAGG	0.567													28	52					0	0	1	0	0	
CTCF	10664	broad.mit.edu	37	16	67645910	67645910	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:67645910A>C	uc002etl.2	+	4	1128	c.838A>C	c.(838-840)AAT>CAT	p.N280H	CTCF_uc010cek.2_Intron	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	280	C2H2-type 1.				chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		ACGGCGTTCAAATTTGGATCG	0.458													13	115					0	0	1	0	0	
RLTPR	146206	broad.mit.edu	37	16	67681466	67681466	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:67681466C>T	uc002etn.2	+	11	952	c.832C>T	c.(832-834)CGG>TGG	p.R278W	RLTPR_uc010cel.1_Missense_Mutation_p.R278W|RLTPR_uc010vjr.1_Missense_Mutation_p.R278W	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	278	LRR 4.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		CTCTGGGCTGCGGGAGCTCAG	0.662													6	13					0	0	1	0	0	
THAP11	57215	broad.mit.edu	37	16	67876716	67876716	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:67876716G>T	uc002euo.2	+	1	504	c.259G>T	c.(259-261)GAG>TAG	p.E87*	CENPT_uc002eun.3_Intron	NM_020457	NP_065190	Q96EK4	THA11_HUMAN	THAP domain containing 11	87					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|identical protein binding|metal ion binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00412)|Epithelial(162;0.018)|all cancers(182;0.118)		CGGCGTCAATGAGCGCAAAGT	0.428													9	14					5.4927e-09	5.87265e-09	1	1	0	
DUS2L	54920	broad.mit.edu	37	16	68107995	68107995	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:68107995G>A	uc002evi.2	+	13	1018	c.869G>A	c.(868-870)CGA>CAA	p.R290Q	DUS2L_uc002evj.2_Missense_Mutation_p.R290Q|DUS2L_uc010vkk.1_Missense_Mutation_p.R255Q|DUS2L_uc010cez.2_Missense_Mutation_p.R203Q	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	290					tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		CAGATGCTACGAGAACAGCTG	0.522													20	37					0	0	1	0	0	
NFATC3	4775	broad.mit.edu	37	16	68156942	68156942	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:68156942G>T	uc002evo.1	+	2	1366	c.1156G>T	c.(1156-1158)GAT>TAT	p.D386Y	NFATC3_uc010vkl.1_5'UTR|NFATC3_uc010vkm.1_5'UTR|NFATC3_uc010vkn.1_5'UTR|NFATC3_uc010vko.1_5'UTR|NFATC3_uc010vkp.1_5'UTR|NFATC3_uc010vkq.1_5'UTR|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Missense_Mutation_p.D386Y|NFATC3_uc002evm.1_Missense_Mutation_p.D386Y|NFATC3_uc002evn.1_Missense_Mutation_p.D386Y|NFATC3_uc010vkr.1_5'UTR|NFATC3_uc010vks.1_5'UTR|NFATC3_uc010vkt.1_5'UTR|NFATC3_uc010vku.1_5'UTR|NFATC3_uc010vkv.1_5'UTR|NFATC3_uc010vkw.1_5'UTR|NFATC3_uc010vkx.1_5'UTR|NFATC3_uc010vky.1_5'UTR|NFATC3_uc010vkz.1_5'UTR|NFATC3_uc010vla.1_5'UTR|NFATC3_uc010vlb.1_5'UTR|NFATC3_uc010vlc.1_5'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	386					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		TTTAAAGAAAGATTCATGTGG	0.448													45	110					4.44401e-20	5.23441e-20	1	1	0	
PRMT7	54496	broad.mit.edu	37	16	68381545	68381545	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:68381545C>T	uc002evy.1	+	13	1563	c.1287C>T	c.(1285-1287)GTC>GTT	p.V429V	PRMT7_uc002evx.1_Intron|PRMT7_uc010vlg.1_Silent_p.V379V|PRMT7_uc002evz.1_Intron	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	429					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		TGTTTACAGTCGAGAGTTCAG	0.408													22	33					0	0	1	0	0	
PRMT7	54496	broad.mit.edu	37	16	68387404	68387404	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:68387404C>T	uc002evy.1	+	16	1861	c.1585C>T	c.(1585-1587)CGG>TGG	p.R529W	PRMT7_uc010vlg.1_Missense_Mutation_p.R479W|PRMT7_uc002evz.1_Missense_Mutation_p.R301W|PRMT7_uc010cfd.1_Missense_Mutation_p.R21W	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	529					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		GGACCTGTGGCGGATCCGGAG	0.612													19	53					0	0	1	0	0	
SMPD3	55512	broad.mit.edu	37	16	68404923	68404923	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:68404923C>T	uc002ewa.2	-	3	1584	c.1162G>A	c.(1162-1164)GAC>AAC	p.D388N	SMPD3_uc010cfe.2_Missense_Mutation_p.D388N|SMPD3_uc010vlh.1_Missense_Mutation_p.D388N	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	388	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	ACCCCGACGTCGTACAGGATG	0.587													10	27					0	0	1	0	0	
ZFP90	146198	broad.mit.edu	37	16	68597611	68597611	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:68597611G>T	uc010cff.2	+	5	1213	c.921G>T	c.(919-921)GAG>GAT	p.E307D	ZFP90_uc002ewb.2_Missense_Mutation_p.R113I|ZFP90_uc002ewc.2_Missense_Mutation_p.R113I|ZFP90_uc002ewd.2_Missense_Mutation_p.E307D|ZFP90_uc002ewe.2_Missense_Mutation_p.E307D	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	307					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		ATACCGGAGAGAAACCCTATC	0.488													34	55					1.30293e-26	1.57754e-26	1	1	0	
CDH3	1001	broad.mit.edu	37	16	68712487	68712487	+	Silent	SNP	C	T	T	rs140049723		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:68712487C>T	uc002ewf.2	+	5	1606	c.474C>T	c.(472-474)TTC>TTT	p.F158F	CDH3_uc010vli.1_Silent_p.F103F	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	158	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		AGGGTGTCTTCGCTGTAGAGA	0.498													49	89					0	0	1	0	0	
PDPR	55066	broad.mit.edu	37	16	70177526	70177526	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:70177526A>C	uc002eyf.1	+	14	2676	c.1719A>C	c.(1717-1719)GAA>GAC	p.E573D	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Missense_Mutation_p.E473D|PDPR_uc002eyg.1_Missense_Mutation_p.E301D|PDPR_uc002eyh.2_5'Flank|PDPR_uc010vls.1_5'Flank	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	573					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		GAGGGTATGAAAATGACTGCA	0.527													7	27					0	0	1	0	0	
SF3B3	23450	broad.mit.edu	37	16	70572358	70572358	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:70572358G>T	uc002ezf.2	+	7	1169	c.958G>T	c.(958-960)GAT>TAT	p.D320Y		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	320					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				GACAGATGAAGATATGGTAAG	0.373													51	84					4.44712e-29	5.41642e-29	1	1	0	
IL34	146433	broad.mit.edu	37	16	70688478	70688478	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:70688478G>A	uc002ezh.1	+	2	449	c.66G>A	c.(64-66)GAG>GAA	p.E22E	IL34_uc002ezi.1_Silent_p.E22E	NM_152456	NP_689669	Q6ZMJ4	IL34_HUMAN	interleukin 34 precursor	22					positive regulation of cell proliferation|positive regulation of protein phosphorylation	extracellular space	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding			central_nervous_system(1)|skin(1)	2						TGGGGAATGAGCCTTTGGAGA	0.557											OREG0023916	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	59					0	0	1	0	0	
HYDIN	54768	broad.mit.edu	37	16	70993581	70993581	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:70993581G>A	uc002ezr.2	-	39	6236	c.6108C>T	c.(6106-6108)ATC>ATT	p.I2036I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2037										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGATAATGGCGATGCCTTTCC	0.532													18	40					0	0	1	0	0	
HYDIN	54768	broad.mit.edu	37	16	71025987	71025987	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:71025987T>C	uc002ezr.2	-	24	3899	c.3771A>G	c.(3769-3771)TTA>TTG	p.L1257L		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1257										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CAAAATCATTTAAATCCATCT	0.448													24	52					0	0	1	0	0	
HYDIN	54768	broad.mit.edu	37	16	71209538	71209538	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:71209538C>T	uc002ezr.2	-	5	616	c.488G>A	c.(487-489)CGA>CAA	p.R163Q	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.R163Q|HYDIN_uc010vmc.1_Missense_Mutation_p.R180Q|HYDIN_uc010vmd.1_Missense_Mutation_p.R190Q|HYDIN_uc002ezw.3_Missense_Mutation_p.R180Q	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	163										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AAAGAGGATTCGGAATATGGA	0.423													28	51					0	0	1	0	0	
HYDIN	54768	broad.mit.edu	37	16	71212926	71212926	+	Missense_Mutation	SNP	C	T	T	rs143424105		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:71212926C>T	uc002ezr.2	-	4	414	c.286G>A	c.(286-288)GCA>ACA	p.A96T	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.A96T|HYDIN_uc010vmc.1_Missense_Mutation_p.A113T|HYDIN_uc010vmd.1_Missense_Mutation_p.A123T|HYDIN_uc002ezw.3_Missense_Mutation_p.A113T	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	96										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGGAATAATGCCTGATCCAGG	0.363													24	58					0	0	1	0	0	
FTSJD1	55783	broad.mit.edu	37	16	71318614	71318614	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:71318614A>C	uc010cga.2	-	3	1616	c.1210T>G	c.(1210-1212)TTT>GTT	p.F404V	FTSJD1_uc002ezy.3_Missense_Mutation_p.F404V|FTSJD1_uc002ezz.3_Missense_Mutation_p.F404V	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	404						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						TTTTGCATAAAATATTGTATA	0.328													13	23					0	0	1	0	0	
CALB2	794	broad.mit.edu	37	16	71408706	71408706	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:71408706A>C	uc002faa.3	+	3	300	c.230A>C	c.(229-231)AAA>ACA	p.K77T	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_Missense_Mutation_p.K77T	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	77	EF-hand 2.|2; possibly ancestral (Probable).						calcium ion binding				0		Ovarian(137;0.125)				AAGTATGATAAAAACTCAGAT	0.502													17	28					0	0	1	0	0	
CALB2	794	broad.mit.edu	37	16	71423745	71423745	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:71423745C>T	uc002faa.3	+	11	863	c.793C>T	c.(793-795)CTC>TTC	p.L265F	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_3'UTR	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	265	EF-hand 6.						calcium ion binding				0		Ovarian(137;0.125)				GGAGATTGTGCTCTGCAGCGA	0.562													39	84					0	0	1	0	0	
TAT	6898	broad.mit.edu	37	16	71606212	71606212	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:71606212C>T	uc002fap.2	-	6	682	c.583G>A	c.(583-585)GAA>AAA	p.E195K		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	195					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	AGGTCAATTTCCCAAGATTTC	0.408													27	53					0	0	1	0	0	
AP1G1	164	broad.mit.edu	37	16	71805084	71805084	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:71805084T>G	uc010cgg.2	-	5	854	c.540A>C	c.(538-540)AAA>AAC	p.K180N	AP1G1_uc002fba.2_Missense_Mutation_p.K180N|AP1G1_uc002fbb.2_Missense_Mutation_p.K203N|AP1G1_uc010vmg.1_RNA|AP1G1_uc010vmh.1_Missense_Mutation_p.K262N	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	180					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				TCAATAAATTTTTTGTTGCTG	0.343													24	30					0	0	1	0	0	
DHODH	1723	broad.mit.edu	37	16	72045994	72045994	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:72045994C>A	uc002fbp.2	+	2	88	c.67C>A	c.(67-69)CTC>ATC	p.L23I	DHODH_uc010cgk.2_RNA	NM_001361	NP_001352	Q02127	PYRD_HUMAN	dihydroorotate dehydrogenase precursor	23	Helical; (By similarity).				'de novo' pyrimidine base biosynthetic process|pyrimidine nucleoside biosynthetic process|UMP biosynthetic process	integral to membrane|mitochondrial inner membrane	dihydroorotate oxidase activity				0		Ovarian(137;0.125)			Atovaquone(DB01117)|Leflunomide(DB01097)	AGGAGGACTTCTCTTCGCCTC	0.612													37	98					2.40579e-17	2.7868e-17	1	1	0	
HP	3240	broad.mit.edu	37	16	72093038	72093038	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:72093038G>A	uc002fbr.3	+	6	437	c.393G>A	c.(391-393)AAG>AAA	p.K131K	TXNL4B_uc010cgl.2_Intron|HP_uc010cgm.2_Silent_p.K72K|HP_uc002fbt.3_Intron|HP_uc002fbu.1_5'UTR|HP_uc002fbv.3_Silent_p.K42K|HP_uc002fbw.3_5'UTR|HP_uc002fbx.3_5'UTR	NM_005143	NP_005134	P00738	HPT_HUMAN	haptoglobin isoform 1 preproprotein	131	Sushi 2.				cellular iron ion homeostasis|defense response|negative regulation of hydrogen peroxide catabolic process|negative regulation of oxidoreductase activity|positive regulation of cell death|proteolysis|response to hydrogen peroxide	extracellular region|haptoglobin-hemoglobin complex	hemoglobin binding|serine-type endopeptidase activity				0		Renal(780;9.67e-05)|Ovarian(137;0.00327)|Hepatocellular(780;0.114)		BRCA - Breast invasive adenocarcinoma(221;0.00015)|Kidney(780;0.000529)		ACAATGAGAAGCAGTGGATAA	0.483													27	51					0	0	1	0	0	
ZFHX3	463	broad.mit.edu	37	16	72829629	72829629	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:72829629C>T	uc002fck.2	-	9	7625	c.6952G>A	c.(6952-6954)GAT>AAT	p.D2318N	ZFHX3_uc002fcl.2_Missense_Mutation_p.D1404N	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2318					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				ATGTATCTATCATTTGTAAGC	0.458													81	113					0	0	1	0	0	
LOC283922	283922	broad.mit.edu	37	16	74372718	74372718	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:74372718C>T	uc002fcr.2	-	9	1587	c.241G>A	c.(241-243)GAC>AAC	p.D81N	LOC283922_uc010vms.1_RNA					Homo sapiens cDNA FLJ39449 fis, clone PROST2008360, highly similar to Homo sapiens pyruvate dehydrogenase phosphatase regulatory subunit (PDPR), mRNA.												0						TCCAGCCGGTCGTAGAGAGGA	0.502													21	24					0	0	1	0	0	
GABARAPL2	11345	broad.mit.edu	37	16	75611253	75611253	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:75611253A>C	uc002fen.2	+	4	476	c.340A>C	c.(340-342)ACT>CCT	p.T114P	GABARAPL2_uc010cgy.2_RNA	NM_007285	NP_009216	P60520	GBRL2_HUMAN	GABA(A) receptor-associated protein-like 2	114					autophagy|intra-Golgi vesicle-mediated transport|positive regulation of ATPase activity|protein transport	autophagic vacuole membrane|cytosol|Golgi membrane|membrane fraction	ATPase binding|beta-tubulin binding|GABA receptor binding|microtubule binding|SNARE binding			ovary(1)	1						CGGAGAGAACACTTTTGGCTT	0.423													25	71					0	0	1	0	0	
CNTNAP4	85445	broad.mit.edu	37	16	76350318	76350318	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:76350318G>A	uc002feu.1	+	4	479	c.94G>A	c.(94-96)GAT>AAT	p.D32N	CNTNAP4_uc002fev.1_5'UTR|CNTNAP4_uc010chb.1_Missense_Mutation_p.D7N|CNTNAP4_uc002fex.1_Missense_Mutation_p.D35N|CNTNAP4_uc002few.2_Missense_Mutation_p.D7N	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	32	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						AGATGACTGTGATGATCCTCT	0.473													6	26					0	0	1	0	0	
CNTNAP4	85445	broad.mit.edu	37	16	76461353	76461353	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:76461353T>G	uc002feu.1	+	6	780	c.395T>G	c.(394-396)TTT>TGT	p.F132C	CNTNAP4_uc002fev.1_Missense_Mutation_p.F44C|CNTNAP4_uc010chb.1_Missense_Mutation_p.F107C|CNTNAP4_uc002fex.1_Missense_Mutation_p.F135C|CNTNAP4_uc002few.2_Missense_Mutation_p.F107C	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	132	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TTTTAGGGTTTTTCAGGAAAT	0.408													41	111					0	0	1	0	0	
ADAMTS18	170692	broad.mit.edu	37	16	77334283	77334283	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:77334283T>C	uc002ffc.3	-	17	2970	c.2551A>G	c.(2551-2553)AAT>GAT	p.N851D	ADAMTS18_uc010chc.1_Missense_Mutation_p.N439D|ADAMTS18_uc002ffe.1_Missense_Mutation_p.N547D	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	851	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ATCCCTGGATTTTTGCCTTGC	0.428													34	59					0	0	1	0	0	
ADAMTS18	170692	broad.mit.edu	37	16	77396073	77396073	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:77396073C>A	uc002ffc.3	-	7	1564	c.1145G>T	c.(1144-1146)AGA>ATA	p.R382I	ADAMTS18_uc010chc.1_5'UTR|ADAMTS18_uc002ffe.1_Missense_Mutation_p.R78I|ADAMTS18_uc010vni.1_Intron	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	382	Peptidase M12B.		R -> K (in a colorectal cancer sample; somatic mutation).		proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding	p.R382K(1)		large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ATGATCATGTCTCTTGCCATT	0.413													19	43					1.96292e-10	2.12899e-10	1	1	0	
CLEC3A	10143	broad.mit.edu	37	16	78064634	78064634	+	Nonsense_Mutation	SNP	C	T	T	rs149998795		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:78064634C>T	uc002ffh.3	+	3	571	c.490C>T	c.(490-492)CGA>TGA	p.R164*		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	164	C-type lectin.				skeletal system development	extracellular region	sugar binding				0						CGGTGGCAAGCGAGAAAACTG	0.532													38	78					0	0	1	0	0	
CDYL2	124359	broad.mit.edu	37	16	80718445	80718445	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:80718445C>A	uc002ffs.2	-	2	711	c.606G>T	c.(604-606)GAG>GAT	p.E202D		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	202						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CGAGCCCGTTCTCCGCCAGTG	0.512													28	56					4.22769e-11	4.62085e-11	1	1	0	
CENPN	55839	broad.mit.edu	37	16	81053750	81053750	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:81053750C>T	uc002ffx.2	+	6	1190	c.400C>T	c.(400-402)CGA>TGA	p.R134*	CENPN_uc002ffw.3_Nonsense_Mutation_p.R134*|CENPN_uc010vnl.1_Nonsense_Mutation_p.R134*|CENPN_uc010vnm.1_Nonsense_Mutation_p.R114*|CENPN_uc002ffy.3_Nonsense_Mutation_p.R134*	NM_001100624	NP_001094094	Q96H22	CENPN_HUMAN	centromere protein N isoform 2	134					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleoplasm					0						AGTCTGGATTCGAATTGCCTG	0.433													13	35					0	0	1	0	0	
ATMIN	23300	broad.mit.edu	37	16	81077066	81077066	+	Silent	SNP	C	T	T	rs148070606		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:81077066C>T	uc002ffz.1	+	4	981	c.963C>T	c.(961-963)GCC>GCT	p.A321A	ATMIN_uc002fga.2_Silent_p.A163A|ATMIN_uc010vnn.1_Silent_p.A92A|ATMIN_uc002fgb.1_Silent_p.A163A	NM_015251	NP_056066	O43313	ATMIN_HUMAN	ATM interactor	321	Required for formation of RAD51 foci.				response to DNA damage stimulus	nucleus	zinc ion binding				0						TGCCTACAGCCGACTCCTCAG	0.527													58	88					0	0	1	0	0	
C16orf46	123775	broad.mit.edu	37	16	81097524	81097524	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:81097524T>G	uc002fgc.3	-	3	296	c.37A>C	c.(37-39)AAT>CAT	p.N13H	C16orf46_uc010chf.2_Missense_Mutation_p.N13H|C16orf46_uc010vno.1_Intron	NM_152337	NP_689550	Q6P387	CP046_HUMAN	chromosome 16 open reading frame 46 isoform 2	13											0						TTTTCAGCATTTTCTAAGTCA	0.323													31	68					0	0	1	0	0	
PKD1L2	114780	broad.mit.edu	37	16	81213297	81213297	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:81213297C>T	uc002fgh.1	-	13	2213	c.2213G>A	c.(2212-2214)AGC>AAC	p.S738N	PKD1L2_uc002fgg.1_RNA|PKD1L2_uc002fgi.2_Missense_Mutation_p.S53N|PKD1L2_uc002fgj.2_Missense_Mutation_p.S738N|PKD1L2_uc002fgk.1_5'Flank|PKD1L2_uc002fgl.1_Missense_Mutation_p.S53N	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	738	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CAGAAACGAGCTGTTCAACAG	0.547													23	40					0	0	1	0	0	
CMIP	80790	broad.mit.edu	37	16	81685954	81685954	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:81685954G>A	uc002fgp.2	+	4	696	c.624G>A	c.(622-624)TCG>TCA	p.S208S	CMIP_uc002fgq.1_Silent_p.S114S|CMIP_uc010vnq.1_Silent_p.S21S|CMIP_uc002fgr.1_Silent_p.S55S	NM_198390	NP_938204	Q8IY22	CMIP_HUMAN	c-Maf-inducing protein isoform C-mip	174						cytoplasm|nucleus					0						AAATCGTCTCGAAACTGCTCT	0.582													5	59					0	0	1	0	0	
PLCG2	5336	broad.mit.edu	37	16	81934292	81934292	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:81934292A>C	uc002fgt.2	+	14	1421	c.1269A>C	c.(1267-1269)GAA>GAC	p.E423D	PLCG2_uc010chg.1_Missense_Mutation_p.E423D	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	423	PI-PLC X-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						CCTTCAAGGAAGTATTTGGCG	0.607													16	24					0	0	1	0	0	
PLCG2	5336	broad.mit.edu	37	16	81944184	81944184	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:81944184A>C	uc002fgt.2	+	18	1945	c.1793A>C	c.(1792-1794)AAA>ACA	p.K598T	PLCG2_uc010chg.1_Missense_Mutation_p.K598T	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	598	SH2 1.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GGGACCCTGAAATACTACTTG	0.647													30	173					0	0	1	0	0	
NECAB2	54550	broad.mit.edu	37	16	84031879	84031879	+	Missense_Mutation	SNP	C	T	T	rs141800256		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:84031879C>T	uc002fhd.2	+	10	936	c.919C>T	c.(919-921)CGC>TGC	p.R307C	NECAB2_uc002fhe.2_Missense_Mutation_p.R224C	NM_019065	NP_061938	Q7Z6G3	NECA2_HUMAN	neuronal calcium-binding protein 2	307	ABM.				antibiotic biosynthetic process	cytoplasm	calcium ion binding|oxidoreductase activity|protein binding			ovary(2)	2						GGACTCTCTGCGCCAGTATCT	0.662													14	30					0	0	1	0	0	
HSDL1	83693	broad.mit.edu	37	16	84164808	84164808	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:84164808A>G	uc002fhk.2	-	3	303	c.119T>C	c.(118-120)GTC>GCC	p.V40A	HSDL1_uc010vnv.1_Missense_Mutation_p.V40A	NM_031463	NP_113651	Q3SXM5	HSDL1_HUMAN	hydroxysteroid dehydrogenase like 1 isoform a	40	Required for mitochondria translocation.					mitochondrion	oxidoreductase activity|protein binding				0						GTCACAGATGACAGTGATGCT	0.498													40	111					0	0	1	0	0	
USP10	9100	broad.mit.edu	37	16	84792352	84792352	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:84792352A>C	uc002fii.2	+	5	1365	c.1223A>C	c.(1222-1224)AAA>ACA	p.K408T	USP10_uc010voe.1_Missense_Mutation_p.K412T|USP10_uc010vof.1_5'UTR|USP10_uc002fij.2_Intron	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	408					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						CTAATCCATAAACCAGTGTCG	0.438													43	75					0	0	1	0	0	
CRISPLD2	83716	broad.mit.edu	37	16	84879404	84879404	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:84879404G>A	uc010voh.1	+	3	480	c.253G>A	c.(253-255)GAA>AAA	p.E85K	CRISPLD2_uc010vog.1_Missense_Mutation_p.E85K|CRISPLD2_uc002fio.2_Missense_Mutation_p.E85K|CRISPLD2_uc002fil.2_Missense_Mutation_p.E85K|CRISPLD2_uc002fim.2_Missense_Mutation_p.E85K|CRISPLD2_uc002fin.3_Missense_Mutation_p.E85K	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	85						extracellular region|transport vesicle					0						CTGGGATGACGAACTGGAGAA	0.617													32	55					0	0	1	0	0	
JPH3	57338	broad.mit.edu	37	16	87723916	87723916	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:87723916C>T	uc002fkd.2	+	4	2204	c.1950C>T	c.(1948-1950)TTC>TTT	p.F650F	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	650	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		ACCGGGGCTTCGGGGTGCAGA	0.692													3	5					0	0	1	0	0	
SLC7A5	8140	broad.mit.edu	37	16	87902728	87902728	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:87902728G>A	uc002fkm.2	-	1	373	c.301C>T	c.(301-303)CTC>TTC	p.L101F		NM_003486	NP_003477	Q01650	LAT1_HUMAN	solute carrier family 7 (cationic amino acid	101	Helical; (Potential).				blood coagulation|cell differentiation|cellular amino acid metabolic process|ion transport|leukocyte migration|nervous system development	apical plasma membrane|cytosol|integral to membrane	neutral amino acid transmembrane transporter activity|peptide antigen binding				0				BRCA - Breast invasive adenocarcinoma(80;0.049)		GCGTAGCAGAGCGCGCCCACG	0.687													29	30					0	0	1	0	0	
CBFA2T3	863	broad.mit.edu	37	16	88958361	88958361	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:88958361C>T	uc002fmm.1	-	5	826	c.640G>A	c.(640-642)GAG>AAG	p.E214K	CBFA2T3_uc002fml.1_Missense_Mutation_p.E128K|CBFA2T3_uc010cif.1_Missense_Mutation_p.E153K|CBFA2T3_uc002fmn.1_Missense_Mutation_p.E189K	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	214	TAFH.|Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		TGAAACTCCTCGATCGTCAAT	0.597			T	RUNX1	AML								7	26					0	0	1	0	0	
CBFA2T3	863	broad.mit.edu	37	16	88958681	88958681	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:88958681G>A	uc002fmm.1	-	4	778	c.592C>T	c.(592-594)CGC>TGC	p.R198C	CBFA2T3_uc002fml.1_Missense_Mutation_p.R112C|CBFA2T3_uc010cif.1_Missense_Mutation_p.R137C|CBFA2T3_uc002fmn.1_Missense_Mutation_p.R173C	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	198	TAFH.|Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		GTGCGCACGCGCTCCCCAATC	0.647			T	RUNX1	AML								16	40					0	0	1	0	0	
CDH15	1013	broad.mit.edu	37	16	89250017	89250017	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:89250017T>G	uc002fmt.2	+	4	496	c.419T>G	c.(418-420)ATT>AGT	p.I140S	CDH15_uc010cij.1_Missense_Mutation_p.I140S	NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	140	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		GACCTGGAGATTGTAGTTGTG	0.612													13	19					0	0	1	0	0	
ANKRD11	29123	broad.mit.edu	37	16	89348754	89348754	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:89348754G>A	uc002fmx.1	-	9	4657	c.4196C>T	c.(4195-4197)GCG>GTG	p.A1399V	ANKRD11_uc002fmy.1_Missense_Mutation_p.A1399V|ANKRD11_uc002fnc.1_Missense_Mutation_p.A1399V|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.A1356V	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1399	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GTAAGCATCCGCCTCCAGGAA	0.443													50	95					0	0	1	0	0	
C16orf7	9605	broad.mit.edu	37	16	89776282	89776282	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:89776282C>T	uc002fom.1	-	11	1416	c.1291G>A	c.(1291-1293)GAA>AAA	p.E431K	C16orf7_uc002fol.1_Missense_Mutation_p.E361K|uc002fon.1_5'Flank	NM_004913	NP_004904	Q9Y2B5	CP007_HUMAN	chromosome 16 open reading frame 7	431					ATP synthesis coupled proton transport		GTPase activator activity|transporter activity				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		TTTAGGCCTTCGAAGGCCAGA	0.617													50	96					0	0	1	0	0	
DEF8	54849	broad.mit.edu	37	16	90016033	90016033	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:90016033A>G	uc002fpn.1	+	2	249	c.160A>G	c.(160-162)ACG>GCG	p.T54A	DEF8_uc002fpl.2_Intron|DEF8_uc002fpm.2_Intron|DEF8_uc002fpo.1_Intron|DEF8_uc002fpp.1_Intron|DEF8_uc010vpq.1_Intron|DEF8_uc010vpr.1_Intron	NM_207514	NP_997397	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 isoform 1	54					intracellular signal transduction		zinc ion binding			central_nervous_system(1)	1		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		CGCGGGCAGGACGCGGGAGGC	0.672													21	39					0	0	1	0	0	
NXN	64359	broad.mit.edu	37	17	708413	708413	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:708413C>T	uc002fsa.2	-	6	987	c.895G>A	c.(895-897)GAC>AAC	p.D299N	NXN_uc010vqd.1_Intron|NXN_uc002frz.2_Missense_Mutation_p.D50N|NXN_uc010vqe.1_Missense_Mutation_p.D191N	NM_022463	NP_071908	Q6DKJ4	NXN_HUMAN	nucleoredoxin	299	Thioredoxin.				cell differentiation|cell redox homeostasis|multicellular organismal development|Wnt receptor signaling pathway	cytosol|nucleus	protein-disulfide reductase activity			ovary(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (25;0.0237)		CAGTCCTCGTCGTTCAGCACC	0.682													10	13					0	0	1	0	0	
HIC1	3090	broad.mit.edu	37	17	1960258	1960258	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:1960258G>A	uc010cjy.2	+	2	331	c.331G>A	c.(331-333)GAG>AAG	p.E111K	HIC1_uc002fty.3_Missense_Mutation_p.E92K|HIC1_uc002ftz.3_Missense_Mutation_p.E92K	NM_001098202	NP_001091672	Q14526	HIC1_HUMAN	hypermethylated in cancer 1 isoform 2	111	Poly-Ala.				multicellular organismal development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)	1				READ - Rectum adenocarcinoma(1115;0.236)		TGACGGCGCAGAGGCGGCTGC	0.721													4	17					0	0	1	0	0	
SMG6	23293	broad.mit.edu	37	17	2201202	2201202	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:2201202C>T	uc002fub.1	-	3	2050	c.1995G>A	c.(1993-1995)GAG>GAA	p.E665E		NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	665					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						GTTCTGGGTTCTCAACATTCG	0.423													42	87					0	0	1	0	0	
TSR1	55720	broad.mit.edu	37	17	2239404	2239404	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:2239404T>G	uc002fuj.2	-	2	1085	c.128A>C	c.(127-129)AAG>ACG	p.K43T	SGSM2_uc002fum.3_5'Flank|SGSM2_uc010vqw.1_5'Flank|SGSM2_uc002fun.3_5'Flank	NM_018128	NP_060598	Q2NL82	TSR1_HUMAN	TSR1, 20S rRNA accumulation	43					ribosome assembly	nucleolus	protein binding			ovary(1)	1						TTTTCTCACCTTCTTGCTTAG	0.567													10	83					0	0	1	0	0	
PAFAH1B1	5048	broad.mit.edu	37	17	2570370	2570370	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:2570370G>T	uc002fuw.3	+	5	845	c.277G>T	c.(277-279)GAA>TAA	p.E93*	PAFAH1B1_uc010ckb.1_RNA	NM_000430	NP_000421	P43034	LIS1_HUMAN	platelet-activating factor acetylhydrolase,	93	Interaction with NDEL1 (By similarity).|Interaction with dynein and dynactin.			E -> G (in Ref. 3; AAL34973).	acrosome assembly|actin cytoskeleton organization|adult locomotory behavior|brain morphogenesis|corpus callosum morphogenesis|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|hippocampus development|layer formation in cerebral cortex|learning or memory|lipid catabolic process|microtubule organizing center organization|mitotic prometaphase|neuroblast proliferation|neuromuscular process controlling balance|neuron migration|platelet activating factor metabolic process|regulation of Rho GTPase activity|retrograde axon cargo transport|synaptic transmission|vesicle transport along microtubule	astral microtubule|cell cortex|centrosome|cytosol|kinetochore|motile primary cilium|nuclear membrane|perinuclear region of cytoplasm	dynactin binding|heparin binding|microtubule binding|phospholipase binding|phosphoprotein binding|protein homodimerization activity			skin(1)	1						AGACCCAAAAGAATGGATTCC	0.428													28	51					4.22769e-11	4.62085e-11	1	1	0	
OR1G1	8390	broad.mit.edu	37	17	3030537	3030537	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3030537A>C	uc002fvc.1	-	1	309	c.309T>G	c.(307-309)TTT>TTG	p.F103L		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATAACATGAAAAAATACAACT	0.473													34	55					0	0	1	0	0	
OR1A2	26189	broad.mit.edu	37	17	3101260	3101260	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3101260G>A	uc002fvd.1	+	1	448	c.448G>A	c.(448-450)GTG>ATG	p.V150M		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGGGTCTTGGGTGATTGGAAA	0.493													54	72					0	0	1	0	0	
OR3A1	4994	broad.mit.edu	37	17	3195189	3195189	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3195189G>A	uc002fvh.1	-	1	688	c.688C>T	c.(688-690)CGA>TGA	p.R230*		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R230*(1)		kidney(2)|central_nervous_system(1)	3						GAGCGAATTCGCAGGACTGCA	0.483													40	79					0	0	1	0	0	
OR3A1	4994	broad.mit.edu	37	17	3195809	3195809	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3195809G>A	uc002fvh.1	-	1	68	c.68C>T	c.(67-69)GCG>GTG	p.A23V		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						CAGCCCTGGCGCCTCCAGCAA	0.567													35	60					0	0	1	0	0	
TRPV3	162514	broad.mit.edu	37	17	3436055	3436055	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3436055A>G	uc002fvt.1	-	8	1283	c.961T>C	c.(961-963)TAC>CAC	p.Y321H	TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Missense_Mutation_p.Y305H|TRPV3_uc010vri.1_Missense_Mutation_p.Y276H|TRPV3_uc010vrj.1_Missense_Mutation_p.Y305H|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.Y305H|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.Y321H|TRPV3_uc002fvu.2_Missense_Mutation_p.Y321H|TRPV3_uc010vrn.1_5'Flank	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	321	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	ATCATGTCGTACATGCGCTTC	0.602													22	42					0	0	1	0	0	
TRPV3	162514	broad.mit.edu	37	17	3436154	3436154	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3436154C>T	uc002fvt.1	-	8	1184	c.862G>A	c.(862-864)GAC>AAC	p.D288N	TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Missense_Mutation_p.D272N|TRPV3_uc010vri.1_Missense_Mutation_p.D243N|TRPV3_uc010vrj.1_Missense_Mutation_p.D272N|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.D272N|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.D288N|TRPV3_uc002fvu.2_Missense_Mutation_p.D288N|TRPV3_uc010vrn.1_5'Flank	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	288	ANK 2.|Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	GAGGTGATGTCCGTCTGCTCG	0.607													18	50					0	0	1	0	0	
P2RX5	5026	broad.mit.edu	37	17	3593419	3593419	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3593419C>A	uc002fwi.2	-	6	843	c.559G>T	c.(559-561)GAC>TAC	p.D187Y	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Missense_Mutation_p.D187Y|P2RX5_uc010vrx.1_Missense_Mutation_p.D127Y|P2RX5_uc002fwj.2_Missense_Mutation_p.D163Y|P2RX5_uc002fwk.2_Missense_Mutation_p.D187Y|P2RX5_uc002fwl.2_Missense_Mutation_p.D163Y	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	187	Extracellular (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						ATGGTGAAGTCTTCGGCCTCC	0.587													71	164					2.42712e-22	2.89376e-22	1	1	0	
P2RX5	5026	broad.mit.edu	37	17	3595070	3595070	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3595070C>A	uc002fwi.2	-	2	440	c.156G>T	c.(154-156)AAG>AAT	p.K52N	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Missense_Mutation_p.K52N|P2RX5_uc010vrx.1_Missense_Mutation_p.K16N|P2RX5_uc002fwj.2_Missense_Mutation_p.K52N|P2RX5_uc002fwk.2_Missense_Mutation_p.K52N|P2RX5_uc002fwl.2_Missense_Mutation_p.K52N|P2RX5_uc002fwm.1_Missense_Mutation_p.K52N	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	52	Extracellular (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						GGTAACCCTTCTTTATCAGGA	0.602													53	111					3.53049e-34	4.34848e-34	1	1	0	
C17orf85	55421	broad.mit.edu	37	17	3721585	3721585	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3721585C>T	uc010ckl.1	-	10	1305	c.1282G>A	c.(1282-1284)GAA>AAA	p.E428K	C17orf85_uc002fwr.2_Missense_Mutation_p.E138K|C17orf85_uc002fwq.2_Missense_Mutation_p.E148K	NM_001114118	NP_001107590	Q53F19	CQ085_HUMAN	ELG protein isoform a	428							nucleotide binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (3;0.0725)		GATTCCACTTCGTCAGCATAC	0.323													25	58					0	0	1	0	0	
C17orf85	55421	broad.mit.edu	37	17	3724565	3724565	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3724565C>T	uc010ckl.1	-	9	1001	c.978G>A	c.(976-978)ACG>ACA	p.T326T	C17orf85_uc002fwr.2_Silent_p.T36T|C17orf85_uc002fwq.2_Silent_p.T46T	NM_001114118	NP_001107590	Q53F19	CQ085_HUMAN	ELG protein isoform a	326							nucleotide binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (3;0.0725)		GTTTATACGACGTCAAGCCAA	0.433													19	39					0	0	1	0	0	
ZZEF1	23140	broad.mit.edu	37	17	3922983	3922983	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:3922983G>T	uc002fxe.2	-	46	7549	c.7485C>A	c.(7483-7485)TTC>TTA	p.F2495L	ZZEF1_uc002fxg.1_5'Flank	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2495							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCTCCAGGAAGAAATAATCGG	0.562													37	62					4.14481e-20	4.8834e-20	1	1	0	
ANKFY1	51479	broad.mit.edu	37	17	4071204	4071204	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:4071204G>A	uc002fxn.2	-	25	3622	c.3505C>T	c.(3505-3507)CGT>TGT	p.R1169C	ANKFY1_uc002fxo.2_Missense_Mutation_p.R1128C|ANKFY1_uc002fxp.2_Missense_Mutation_p.R1126C|ANKFY1_uc010ckp.2_Missense_Mutation_p.R1069C	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	1127	FYVE-type.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						CCGCAGTGACGACTGTGGAAG	0.512													25	42					0	0	1	0	0	
ANKFY1	51479	broad.mit.edu	37	17	4085508	4085508	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:4085508C>T	uc002fxq.1	-	15	2127	c.2089G>A	c.(2089-2091)GCA>ACA	p.A697T	ANKFY1_uc002fxn.2_Missense_Mutation_p.A739T|ANKFY1_uc002fxo.2_Missense_Mutation_p.A698T|ANKFY1_uc002fxp.2_Missense_Mutation_p.A696T|ANKFY1_uc010ckp.2_Missense_Mutation_p.A639T	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	697	ANK 11.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						AGATTGTTTGCCAATGCAAGC	0.527													52	104					0	0	1	0	0	
SPNS3	201305	broad.mit.edu	37	17	4337402	4337402	+	Missense_Mutation	SNP	C	T	T	rs34349047	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:4337402C>T	uc002fxt.2	+	1	184	c.140C>T	c.(139-141)GCT>GTT	p.A47V	SPNS3_uc002fxu.2_5'UTR	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	47					lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						GCCTACGTGGCTGCCGCCGTC	0.642													31	57					0	0	1	0	0	
PELP1	27043	broad.mit.edu	37	17	4578449	4578449	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:4578449C>T	uc002fyi.3	-	11	1425	c.1199G>A	c.(1198-1200)CGC>CAC	p.R400H	PELP1_uc010vsf.1_Missense_Mutation_p.R253H	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	400					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						GGGAAGCAGGCGGCCGATCAG	0.602													12	18					0	0	1	0	0	
CXCL16	58191	broad.mit.edu	37	17	4638447	4638447	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:4638447C>T	uc002fyr.3	-	4	1247	c.715G>A	c.(715-717)GCA>ACA	p.A239T	CXCL16_uc002fyq.3_Missense_Mutation_p.A81T|CXCL16_uc002fys.3_Missense_Mutation_p.A239T	NM_022059	NP_071342	Q9H2A7	CXL16_HUMAN	chemokine (C-X-C motif) ligand 16	220	Helical; (Potential).				lymphocyte chemotaxis|positive regulation of cell growth|positive regulation of cell migration|receptor-mediated endocytosis|response to interferon-gamma|response to tumor necrosis factor	extracellular space|integral to membrane|plasma membrane	chemokine activity|low-density lipoprotein receptor activity|scavenger receptor activity				0						GAAAGGGCTGCGGTGAGGATG	0.592													10	29					0	0	1	0	0	
GP1BA	2811	broad.mit.edu	37	17	4836037	4836037	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:4836037G>A	uc010vsq.1	+	2	213	c.138G>A	c.(136-138)CCG>CCA	p.P46P	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	46											0						CAGACCTGCCGAAAGACACAA	0.552													68	130					0	0	1	0	0	
SLC25A11	8402	broad.mit.edu	37	17	4841845	4841845	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:4841845G>A	uc002fzo.1	-	4	621	c.508C>T	c.(508-510)CGA>TGA	p.R170*	SLC25A11_uc002fzp.1_Nonsense_Mutation_p.R166*|RNF167_uc002fzq.2_5'Flank|RNF167_uc002fzr.2_5'Flank|RNF167_uc002fzs.2_5'Flank|RNF167_uc002fzt.2_5'Flank|RNF167_uc002fzu.2_5'Flank|RNF167_uc002fzv.2_5'Flank|RNF167_uc002fzw.1_5'Flank|RNF167_uc002fzx.2_5'Flank	NM_003562	NP_003553	Q02978	M2OM_HUMAN	solute carrier family 25 member 11 isoform 1	170	Solcar 2.				gluconeogenesis	integral to plasma membrane|mitochondrial inner membrane	oxoglutarate:malate antiporter activity				0						CGGGTGATTCGAATCAGGGCG	0.567													57	106					0	0	1	0	0	
KIF1C	10749	broad.mit.edu	37	17	4927223	4927223	+	Missense_Mutation	SNP	G	A	A	rs139120839		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:4927223G>A	uc002gan.1	+	23	3415	c.3089G>A	c.(3088-3090)CGC>CAC	p.R1030H		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	1030	Pro-rich.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						CACCATCCCCGCAGGAACTCC	0.672													21	39					0	0	1	0	0	
ZNF594	84622	broad.mit.edu	37	17	5085969	5085969	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:5085969C>T	uc010cla.1	-	2	1739	c.1583G>A	c.(1582-1584)CGC>CAC	p.R528H		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	528	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						GAAAGCTGTGCGCCAAATGAA	0.458													48	112					0	0	1	0	0	
ZNF594	84622	broad.mit.edu	37	17	5086896	5086896	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:5086896G>A	uc010cla.1	-	2	812	c.656C>T	c.(655-657)GCT>GTT	p.A219V		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	219	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						TCCCTTAAAAGCCTTCCCACA	0.448													44	107					0	0	1	0	0	
NLRP1	22861	broad.mit.edu	37	17	5434015	5434015	+	Silent	SNP	G	A	A	rs35985646		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:5434015G>A	uc002gci.2	-	12	3861	c.3306C>T	c.(3304-3306)TTC>TTT	p.F1102F	NLRP1_uc002gcg.1_Silent_p.F1106F|NLRP1_uc002gck.2_Silent_p.F1102F|NLRP1_uc002gcj.2_Silent_p.F1072F|NLRP1_uc002gcl.2_Silent_p.F1072F|NLRP1_uc002gch.3_Silent_p.F1102F|NLRP1_uc010clh.2_Silent_p.F1102F	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1102					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CAGCTACAGGGAAGTGAACTC	0.368													15	43					0	0	1	0	0	
NLRP1	22861	broad.mit.edu	37	17	5442742	5442742	+	Missense_Mutation	SNP	G	A	A	rs139267837	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:5442742G>A	uc002gci.2	-	7	3418	c.2863C>T	c.(2863-2865)CGC>TGC	p.R955C	NLRP1_uc002gcg.1_Missense_Mutation_p.R955C|NLRP1_uc002gck.2_Missense_Mutation_p.R955C|NLRP1_uc002gcj.2_Missense_Mutation_p.R955C|NLRP1_uc002gcl.2_Missense_Mutation_p.R955C|NLRP1_uc002gch.3_Missense_Mutation_p.R955C|NLRP1_uc010clh.2_Missense_Mutation_p.R955C	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	955	LRR 6.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TACCCCAGGCGTATGAGTTTG	0.532													19	37					0	0	1	0	0	
PITPNM3	83394	broad.mit.edu	37	17	6387538	6387538	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:6387538C>T	uc002gdd.3	-	5	500	c.349G>A	c.(349-351)GAG>AAG	p.E117K	PITPNM3_uc010cln.2_Missense_Mutation_p.E81K|PITPNM3_uc002gdc.3_5'Flank	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	117					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		CAGCCTACCTCGCTGTCTTCG	0.443													57	103					0	0	1	0	0	
KIAA0753	9851	broad.mit.edu	37	17	6531586	6531586	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:6531586G>A	uc002gde.3	-	3	928	c.569C>T	c.(568-570)TCG>TTG	p.S190L	KIAA0753_uc010clo.2_5'UTR|KIAA0753_uc010vte.1_5'UTR	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	190						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		GGTGGGTGGCGAATTTGGCAC	0.498													38	92					0	0	1	0	0	
XAF1	54739	broad.mit.edu	37	17	6661423	6661423	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:6661423C>T	uc002gdn.2	+	2	290	c.48C>T	c.(46-48)GTC>GTT	p.V16V	XAF1_uc010clr.1_Silent_p.V16V|XAF1_uc002gdm.1_5'UTR|XAF1_uc002gdo.2_Silent_p.V16V|XAF1_uc002gdp.2_5'UTR|XAF1_uc002gdq.2_5'UTR|XAF1_uc002gdr.2_5'UTR	NM_017523	NP_059993	Q6GPH4	XAF1_HUMAN	XIAP associated factor 1 isoform 1	16					apoptosis|type I interferon-mediated signaling pathway	mitochondrion|nucleus	zinc ion binding				0						GACATGTAGTCTCTGCCAACT	0.478													59	124					0	0	1	0	0	
POLR2A	5430	broad.mit.edu	37	17	7414556	7414556	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7414556T>C	uc002ghf.3	+	23	4070	c.3836T>C	c.(3835-3837)ATG>ACG	p.M1279T		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1279					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				GTGGACAAGATGGATGATGAT	0.557													11	52					0	0	1	0	0	
POLR2A	5430	broad.mit.edu	37	17	7415517	7415517	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7415517A>G	uc002ghf.3	+	26	4580	c.4346A>G	c.(4345-4347)GAC>GGC	p.D1449G		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	1449				D -> Y (in Ref. 2; CAA52862).	mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				GGTGAGAGTGACCCCATGAAG	0.592													13	35					0	0	1	0	0	
EIF4A1	1973	broad.mit.edu	37	17	7480012	7480012	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7480012T>C	uc002gho.1	+	13	1839	c.514_splice	c.e13+2	p.S172_splice	EIF4A1_uc002ghr.1_Splice_Site_p.S172_splice|EIF4A1_uc002ghq.1_Splice_Site_p.S172_splice|EIF4A1_uc002ghp.1_Splice_Site_p.S172_splice|SNORD10_uc002ght.2_5'Flank|SNORA67_uc010cml.1_5'Flank|CD68_uc002ghv.2_5'Flank|CD68_uc002ghu.2_5'Flank	NM_001416	NP_001407	P60842	IF4A1_HUMAN	eukaryotic translation initiation factor 4A						nuclear-transcribed mRNA poly(A) tail shortening	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA cap binding|translation initiation factor activity			ovary(1)	1						GATACCTGTGTGAGTAATTCG	0.522													38	66					0	0	1	0	0	
ATP1B2	482	broad.mit.edu	37	17	7557412	7557412	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7557412G>A	uc002gif.1	+	4	972	c.389G>A	c.(388-390)CGC>CAC	p.R130H		NM_001678	NP_001669	P14415	AT1B2_HUMAN	Na+/K+ -ATPase beta 2 subunit	130	Extracellular (Potential).				ATP biosynthetic process|blood coagulation|leukocyte migration	integral to membrane|plasma membrane	protein binding|sodium:potassium-exchanging ATPase activity	p.0?(2)|p.?(1)		central_nervous_system(1)|pancreas(1)	2		all_cancers(10;0.000178)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;2.55e-06)|READ - Rectum adenocarcinoma(115;0.168)		GATGTCTGCCGCCCTGGACGC	0.547													89	184					0	0	1	0	0	
WRAP53	55135	broad.mit.edu	37	17	7604072	7604072	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7604072G>A	uc010vuh.1	+	5	811	c.656G>A	c.(655-657)CGA>CAA	p.R219Q	WRAP53_uc010vui.1_Missense_Mutation_p.R219Q|WRAP53_uc002gip.2_Missense_Mutation_p.R219Q|WRAP53_uc002gir.2_Missense_Mutation_p.R219Q|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Missense_Mutation_p.R186Q|WRAP53_uc010vuj.1_5'UTR	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	219					positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						CCTGTCCTTCGAATGGTGGAA	0.537													56	129					0	0	1	0	0	
DNAH2	146754	broad.mit.edu	37	17	7660464	7660464	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7660464A>G	uc002giu.1	+	12	1974	c.1960A>G	c.(1960-1962)ACG>GCG	p.T654A		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	654	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GCTGTTTGAGACGCCCCATTA	0.552													92	213					0	0	1	0	0	
DNAH2	146754	broad.mit.edu	37	17	7662770	7662770	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7662770C>T	uc002giu.1	+	15	2493	c.2479C>T	c.(2479-2481)CGG>TGG	p.R827W		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	827	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GTACATGATTCGGCTGGACCG	0.522													30	54					0	0	1	0	0	
CHD3	1107	broad.mit.edu	37	17	7809005	7809005	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7809005G>A	uc002gje.2	+	27	4355	c.4205G>A	c.(4204-4206)CGA>CAA	p.R1402Q	CHD3_uc002gjd.2_Missense_Mutation_p.R1461Q|CHD3_uc002gjf.2_Missense_Mutation_p.R1402Q|CHD3_uc002gjh.2_5'UTR|SCARNA21_uc002gji.1_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1402					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CTGCTGGCCCGAGTCGGGGGC	0.577													14	34					0	0	1	0	0	
ALOX15B	247	broad.mit.edu	37	17	7950271	7950271	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7950271A>G	uc002gju.2	+	10	1450	c.1334A>G	c.(1333-1335)AAC>AGC	p.N445S	ALOX15B_uc002gjv.2_Missense_Mutation_p.N416S|ALOX15B_uc002gjw.2_Missense_Mutation_p.N416S|ALOX15B_uc010vun.1_Missense_Mutation_p.N445S|ALOX15B_uc010cnp.2_Missense_Mutation_p.N251S	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	445	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						ATACAGAGGAACATGAAGCAG	0.522													30	56					0	0	1	0	0	
ALOX12B	242	broad.mit.edu	37	17	7980465	7980465	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:7980465T>C	uc002gjy.1	-	9	1379	c.1118A>G	c.(1117-1119)GAT>GGT	p.D373G	uc010cnq.1_5'Flank	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	373	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						CCACTCAGAATCACTGGGCAG	0.582										Multiple Myeloma(8;0.094)			10	16					0	0	1	0	0	
ALOXE3	59344	broad.mit.edu	37	17	8021304	8021304	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:8021304G>A	uc010cnr.2	-	2	375	c.5C>T	c.(4-6)GCA>GTA	p.A2V	ALOXE3_uc002gka.2_Missense_Mutation_p.A158V|ALOXE3_uc010vuo.1_Missense_Mutation_p.A134V|ALOXE3_uc010vup.1_RNA	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	2	PLAT.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						GCGGTACACTGCCATGATGGG	0.647													5	13					0	0	1	0	0	
HES7	84667	broad.mit.edu	37	17	8026394	8026394	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:8026394G>C	uc002gkc.2	-	2	93	c.93C>G	c.(91-93)AGC>AGG	p.S31R	HES7_uc002gkb.1_Missense_Mutation_p.S31R	NM_032580	NP_115969	Q9BYE0	HES7_HUMAN	hairy and enhancer of split 7 isoform 2	31	Helix-loop-helix motif.				mesoderm development|transcription, DNA-dependent	nucleus	DNA binding				0						GCTCTTCCAGGCTGCGGTTGA	0.667													5	12					0	0	1	0	0	
PER1	5187	broad.mit.edu	37	17	8053326	8053326	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:8053326C>T	uc002gkd.2	-	4	730	c.492G>A	c.(490-492)ACG>ACA	p.T164T	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Silent_p.T148T|PER1_uc010vus.1_Silent_p.T164T	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	164					circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						CGTACTGCAGCGTGGCCAGGG	0.642			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					24	224					0	0	1	0	0	
C17orf68	80169	broad.mit.edu	37	17	8139580	8139580	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:8139580G>A	uc002gkq.3	-	6	932	c.873C>T	c.(871-873)ATC>ATT	p.I291I	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	291					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						GCTGACCACGGATCTTGGACA	0.587													15	50					0	0	1	0	0	
MYH10	4628	broad.mit.edu	37	17	8409702	8409702	+	Missense_Mutation	SNP	G	A	A	rs150206681	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:8409702G>A	uc002gll.2	-	25	3323	c.3227C>T	c.(3226-3228)GCG>GTG	p.A1076V	MYH10_uc002glm.2_Missense_Mutation_p.A1107V|MYH10_uc010cnx.2_Missense_Mutation_p.A1085V	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1076	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						ATCAATCTGCGCCTGCAGCTC	0.592													28	57					0	0	1	0	0	
CCDC42	146849	broad.mit.edu	37	17	8644901	8644901	+	Missense_Mutation	SNP	C	T	T	rs142451736		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:8644901C>T	uc002gln.2	-	4	610	c.383G>A	c.(382-384)CGC>CAC	p.R128H	CCDC42_uc002glo.2_Missense_Mutation_p.R128H	NM_144681	NP_653282	Q96M95	CCD42_HUMAN	coiled-coil domain containing 42 isoform 1	128	Potential.									ovary(1)	1						CTCCTGCTTGCGCTTGGTCAG	0.592													44	65					0	0	1	0	0	
MFSD6L	162387	broad.mit.edu	37	17	8701241	8701241	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:8701241C>T	uc002glp.1	-	1	1346	c.1198G>A	c.(1198-1200)GAG>AAG	p.E400K		NM_152599	NP_689812	Q8IWD5	MFS6L_HUMAN	major facilitator superfamily domain containing	400	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						ATGACCAGCTCGCCGCTCCCA	0.547													50	66					0	0	1	0	0	
NTN1	9423	broad.mit.edu	37	17	9066163	9066163	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:9066163G>A	uc002glw.3	+	3	1159	c.1052G>A	c.(1051-1053)CGC>CAC	p.R351H		NM_004822	NP_004813	O95631	NET1_HUMAN	netrin 1 precursor	351	Laminin EGF-like 2.		R -> H (in a neuroblastoma sample).		apoptosis|axon guidance		protein binding				0						CGGCGCTGCCGCTTCAACATG	0.647													41	88					0	0	1	0	0	
STX8	9482	broad.mit.edu	37	17	9471774	9471774	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:9471774C>T	uc002glx.2	-	2	181	c.31G>A	c.(31-33)GAT>AAT	p.D11N		NM_004853	NP_004844	Q9UNK0	STX8_HUMAN	syntaxin 8	11	Cytoplasmic (Potential).				transport	endoplasmic reticulum|integral to plasma membrane				central_nervous_system(1)	1						CAAGTAGAATCGTATGTGGAG	0.269													15	21					0	0	1	0	0	
WDR16	146845	broad.mit.edu	37	17	9536289	9536289	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:9536289T>C	uc002gly.2	+	10	1328	c.1259T>C	c.(1258-1260)GTC>GCC	p.V420A	WDR16_uc002glz.2_Missense_Mutation_p.V352A|WDR16_uc010coc.2_Missense_Mutation_p.V430A	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	420	WD 7.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AGGATCGGCGTCACCGCCATC	0.507													27	81					0	0	1	0	0	
GAS7	8522	broad.mit.edu	37	17	9830036	9830036	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:9830036C>A	uc002gmg.1	-	10	1097	c.936G>T	c.(934-936)AAG>AAT	p.K312N	GAS7_uc010vvc.1_Missense_Mutation_p.K126N|GAS7_uc002gmh.1_Missense_Mutation_p.K172N|GAS7_uc010vvd.1_Missense_Mutation_p.K264N|GAS7_uc002gmi.2_Missense_Mutation_p.K248N|GAS7_uc002gmj.1_Missense_Mutation_p.K252N|GAS7_uc010coh.1_Missense_Mutation_p.K252N	NM_201433	NP_958839	O60861	GAS7_HUMAN	growth arrest-specific 7 isoform c	312	Potential.				cell cycle arrest	cytoplasm	sequence-specific DNA binding transcription factor activity			lung(1)|pancreas(1)	2						TCATGTCTTTCTTGAAGTTCT	0.577			T	MLL	AML*								24	71					1.5548e-18	1.818e-18	1	1	0	
MYH13	8735	broad.mit.edu	37	17	10210275	10210275	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10210275G>A	uc002gmk.1	-	36	5366	c.5276C>T	c.(5275-5277)GCC>GTC	p.A1759V		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1759	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GGCCTTCTTGGCCTTCTCCTC	0.473													27	54					0	0	1	0	0	
MYH13	8735	broad.mit.edu	37	17	10227375	10227375	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10227375C>T	uc002gmk.1	-	23	2988	c.2898G>A	c.(2896-2898)ACG>ACA	p.T966T	MYH13_uc010vve.1_Silent_p.T64T	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	966	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TTTCAACTTTCGTCAAGGTCA	0.463													19	34					0	0	1	0	0	
MYH8	4626	broad.mit.edu	37	17	10297697	10297697	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10297697G>A	uc002gmm.2	-	35	5130	c.5035C>T	c.(5035-5037)CGC>TGC	p.R1679C	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1679	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTGGCTCTGCGCTCCACAATT	0.557									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				25	66					0	0	1	0	0	
MYH8	4626	broad.mit.edu	37	17	10312471	10312471	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10312471C>T	uc002gmm.2	-	17	2003	c.1908G>A	c.(1906-1908)GCG>GCA	p.A636A	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	636	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CACCTTTCTTCGCGCTGCTAT	0.348									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				15	51					0	0	1	0	0	
MYH4	4622	broad.mit.edu	37	17	10357945	10357945	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10357945T>G	uc002gmn.2	-	22	2729	c.2618A>C	c.(2617-2619)AAA>ACA	p.K873T	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	873	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTCTTTCCTTTTTGCCTCTGT	0.418													46	98					0	0	1	0	0	
MYH1	4619	broad.mit.edu	37	17	10402034	10402034	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10402034C>T	uc002gmo.2	-	30	4184	c.4090G>A	c.(4090-4092)GCA>ACA	p.A1364T	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1364	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTGGACATTGCTCTCTGTAGC	0.587													68	95					0	0	1	0	0	
MYH1	4619	broad.mit.edu	37	17	10405120	10405120	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10405120C>A	uc002gmo.2	-	25	3314	c.3220G>T	c.(3220-3222)GAA>TAA	p.E1074*	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1074	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTGTCATTTTCTATATCCATT	0.343													14	26					3.27435e-08	3.46512e-08	1	1	0	
MYH2	4620	broad.mit.edu	37	17	10428901	10428901	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10428901T>G	uc010coi.2	-	32	4532	c.4404A>C	c.(4402-4404)GAA>GAC	p.E1468D	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1468D|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1468	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CAGCATGCGTTTCCTCACATT	0.473													33	56					0	0	1	0	0	
MYH2	4620	broad.mit.edu	37	17	10429120	10429120	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10429120C>T	uc010coi.2	-	31	4389	c.4261G>A	c.(4261-4263)GAA>AAA	p.E1421K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1421K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1421	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTCGTCTTTTCGAGGGAAGCA	0.512													36	73					0	0	1	0	0	
MYH2	4620	broad.mit.edu	37	17	10447032	10447032	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10447032C>T	uc010coi.2	-	8	865	c.737G>A	c.(736-738)CGC>CAC	p.R246H	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.R246H|MYH2_uc010coj.2_Missense_Mutation_p.R246H	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	246	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ACTTACAAAGCGAGAGGAGTT	0.443													27	62					0	0	1	0	0	
MYH2	4620	broad.mit.edu	37	17	10447416	10447416	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10447416C>T	uc010coi.2	-	6	661	c.533_splice	c.e6+1	p.T178_splice	uc002gml.1_Intron|MYH2_uc002gmp.3_Splice_Site_p.T178_splice|MYH2_uc010coj.2_Splice_Site_p.T178_splice	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa						muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AATCTACTTACGTGATCAGGA	0.343													19	46					0	0	1	0	0	
MYH3	4621	broad.mit.edu	37	17	10541674	10541674	+	Missense_Mutation	SNP	C	T	T	rs138631084		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10541674C>T	uc002gmq.1	-	26	3492	c.3415G>A	c.(3415-3417)GAC>AAC	p.D1139N		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1139	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CGGGCATAGTCGCTGCGCTGT	0.647													16	41					0	0	1	0	0	
MYH3	4621	broad.mit.edu	37	17	10549159	10549159	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10549159C>T	uc002gmq.1	-	11	1083	c.1006G>A	c.(1006-1008)GCC>ACC	p.A336T		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	336	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						ATGTCAATGGCGCTCTGGCAT	0.557											OREG0024181	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	71					0	0	1	0	0	
MYH3	4621	broad.mit.edu	37	17	10550506	10550506	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:10550506C>T	uc002gmq.1	-	9	968	c.891G>A	c.(889-891)GAG>GAA	p.E297E		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	297	Myosin head-like.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CACCTATGAGCTCAGGCTTCT	0.448													36	75					0	0	1	0	0	
DNAH9	1770	broad.mit.edu	37	17	11622691	11622691	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:11622691A>G	uc002gne.2	+	27	5661	c.5593A>G	c.(5593-5595)AGT>GGT	p.S1865G	DNAH9_uc010coo.2_Missense_Mutation_p.S1159G	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1865	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCTGACCATGAGTGGGGCTCC	0.607													28	45					0	0	1	0	0	
DNAH9	1770	broad.mit.edu	37	17	11660968	11660968	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:11660968C>T	uc002gne.2	+	35	7022	c.6954C>T	c.(6952-6954)TTC>TTT	p.F2318F	DNAH9_uc010coo.2_Silent_p.F1612F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2318	AAA 2 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCATTTTGTTCGACAAGTATC	0.473													16	59					0	0	1	0	0	
DNAH9	1770	broad.mit.edu	37	17	11806042	11806042	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:11806042T>G	uc002gne.2	+	60	11481	c.11413T>G	c.(11413-11415)TCA>GCA	p.S3805A	DNAH9_uc010coo.2_Missense_Mutation_p.S3099A|DNAH9_uc002gnf.2_Missense_Mutation_p.S117A|DNAH9_uc010vvh.1_Missense_Mutation_p.S158A	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3805					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCAGGTACTTTCATCAATGGA	0.438													46	67					0	0	1	0	0	
DNAH9	1770	broad.mit.edu	37	17	11837235	11837235	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:11837235C>T	uc002gne.2	+	65	12404	c.12336C>T	c.(12334-12336)ATC>ATT	p.I4112I	DNAH9_uc010coo.2_Silent_p.I3330I|DNAH9_uc002gnf.2_Silent_p.I424I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4112					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTGGAGAGATCATGTATGGAG	0.498													29	59					0	0	1	0	0	
DNAH9	1770	broad.mit.edu	37	17	11840674	11840674	+	Silent	SNP	C	T	T	rs143953217	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:11840674C>T	uc002gne.2	+	66	12563	c.12495C>T	c.(12493-12495)ATC>ATT	p.I4165I	DNAH9_uc010coo.2_Silent_p.I3383I|DNAH9_uc002gnf.2_Silent_p.I477I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4165					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTCAGTACATCGATGCTGAGC	0.547													47	90					0	0	1	0	0	
ZNF18	7566	broad.mit.edu	37	17	11881837	11881837	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:11881837C>A	uc002gng.1	-	9	1692	c.1087G>T	c.(1087-1089)GAA>TAA	p.E363*	ZNF18_uc002gnh.1_Nonsense_Mutation_p.E363*|ZNF18_uc002gni.1_Nonsense_Mutation_p.E362*	NM_144680	NP_653281	P17022	ZNF18_HUMAN	zinc finger protein 18	363					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1				Colorectal(4;3.33e-05)|COAD - Colon adenocarcinoma(4;0.000494)|READ - Rectum adenocarcinoma(10;0.233)		GAAATCCTTTCTTGAGGAGAC	0.488													79	140					6.86016e-32	8.41042e-32	1	1	0	
CDRT1	374286	broad.mit.edu	37	17	15522795	15522795	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:15522795G>A	uc002gov.3	-	1	224	c.32C>T	c.(31-33)GCC>GTC	p.A11V	TRIM16_uc002gor.1_Intron	NM_006382	NP_006373	O95170	CDRT1_HUMAN	CMT1A duplicated region transcript 1	11											0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(2;1.36e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0541)		AAAATAGGGGGCATTCTTGAG	0.493													97	341					0	0	1	0	0	
ZNF286A	57335	broad.mit.edu	37	17	15620583	15620583	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:15620583T>G	uc010cot.2	+	6	1941	c.1545T>G	c.(1543-1545)GTT>GTG	p.V515V	ZNF286A_uc002goz.3_Silent_p.V403V|ZNF286A_uc010vwa.1_Silent_p.V515V|ZNF286A_uc002gpa.2_Silent_p.V515V	NM_001130842	NP_001124314	Q9HBT8	Z286A_HUMAN	zinc finger protein 286	515	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.0781)		ATCAAAGAGTTCACACTGAAG	0.383													17	19					0	0	1	0	0	
TTC19	54902	broad.mit.edu	37	17	15928385	15928385	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:15928385C>T	uc002gph.1	+	8	1112	c.1094C>T	c.(1093-1095)GCT>GTT	p.A365V	TTC19_uc010cox.1_RNA|TTC19_uc002gpk.3_Missense_Mutation_p.A7V|TTC19_uc002gpj.2_Missense_Mutation_p.A7V	NM_017775	NP_060245	Q6DKK2	TTC19_HUMAN	tetratricopeptide repeat domain 19	244	TPR 3.				cell cycle|cytokinesis|mitochondrial respiratory chain complex III assembly	centrosome|midbody|mitochondrial inner membrane	protein binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		GACGCCTGTGCTCGCTACCTT	0.468													32	56					0	0	1	0	0	
NCOR1	9611	broad.mit.edu	37	17	15971356	15971356	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:15971356C>T	uc002gpo.2	-	32	4833	c.4593G>A	c.(4591-4593)GCG>GCA	p.A1531A	NCOR1_uc002gpn.2_Silent_p.A1547A|NCOR1_uc002gpm.2_Silent_p.A52A|NCOR1_uc010vwb.1_Silent_p.A115A|NCOR1_uc010coy.2_Silent_p.A439A|NCOR1_uc010vwc.1_Silent_p.A342A	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1531	Interaction with ETO.|Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		CTGGAGACTTCGCTGGGATAC	0.522													25	35					0	0	1	0	0	
NCOR1	9611	broad.mit.edu	37	17	16041478	16041478	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:16041478C>T	uc002gpo.2	-	13	1641	c.1401G>A	c.(1399-1401)GAG>GAA	p.E467E	NCOR1_uc002gpn.2_Silent_p.E467E|NCOR1_uc002gpp.1_Silent_p.E358E|NCOR1_uc002gpr.2_Silent_p.E358E|NCOR1_uc002gps.1_Silent_p.E476E|NCOR1_uc010coz.1_Silent_p.E283E|NCOR1_uc010cpb.1_Silent_p.E476E|NCOR1_uc010cpa.1_Silent_p.E467E	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	467	SANT 1.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TTACCTTCCTCTCCAAGTATG	0.358													11	38					0	0	1	0	0	
TRPV2	51393	broad.mit.edu	37	17	16327012	16327012	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:16327012G>A	uc002gpy.2	+	5	1222	c.855G>A	c.(853-855)CAG>CAA	p.Q285Q	TRPV2_uc002gpz.2_Intron	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	285	Cytoplasmic (Potential).|Required for interaction with SLC50A1 (By similarity).|ANK 5.				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CTACCGTGCAGCTTGAGGACA	0.602													40	76					0	0	1	0	0	
ZNF287	57336	broad.mit.edu	37	17	16455532	16455532	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:16455532G>T	uc002gqi.2	-	6	2377	c.1924C>A	c.(1924-1926)CAT>AAT	p.H642N		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	635	C2H2-type 10.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		TCTCCATTATGAATCCTCTGA	0.393													26	52					9.86323e-18	1.14658e-17	1	1	0	
ZNF287	57336	broad.mit.edu	37	17	16467135	16467135	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:16467135G>A	uc002gqi.2	-	4	959	c.506C>T	c.(505-507)TCG>TTG	p.S169L		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	162					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		GAATGTCATCGATTCCTAAAA	0.413													23	45					0	0	1	0	0	
ZNF624	57547	broad.mit.edu	37	17	16525654	16525654	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:16525654G>A	uc010cpi.1	-	6	2629	c.2546C>T	c.(2545-2547)TCG>TTG	p.S849L		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	849	C2H2-type 21.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		AGTAAGGCTCGAACTACTCCT	0.363													52	102					0	0	1	0	0	
CCDC144A	9720	broad.mit.edu	37	17	16638008	16638008	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:16638008C>A	uc002gqk.1	+	12	2499	c.2423C>A	c.(2422-2424)TCT>TAT	p.S808Y	CCDC144A_uc002gql.1_Missense_Mutation_p.S278Y|LOC162632_uc010cpj.1_RNA	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	808	Potential.										0						ACTTAGATTTCTCATAGGCAT	0.313													3	5					0.115264	0.115603	1	1	0	
RASD1	51655	broad.mit.edu	37	17	17398896	17398896	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:17398896T>C	uc002gri.2	-	2	601	c.389A>G	c.(388-390)AAC>AGC	p.N130S		NM_016084	NP_057168	Q9Y272	RASD1_HUMAN	RAS, dexamethasone-induced 1 precursor	130					G-protein coupled receptor protein signaling pathway|small GTPase mediated signal transduction	nucleus|perinuclear region of cytoplasm|plasma membrane	GTP binding|GTPase activity				0						CTTGGTTTTGTTCTTGAGGCA	0.592													7	12					0	0	1	0	0	
DRG2	1819	broad.mit.edu	37	17	18003967	18003967	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18003967G>A	uc002gsh.1	+	7	680	c.625G>A	c.(625-627)GAA>AAA	p.E209K	DRG2_uc002gsi.1_RNA|DRG2_uc002gsj.1_Missense_Mutation_p.E209K	NM_001388	NP_001379	P55039	DRG2_HUMAN	developmentally regulated GTP binding protein 2	209					signal transduction		GTP binding			ovary(1)	1	all_neural(463;0.228)					CATCCTGCACGAATACAGTAT	0.567													9	17					0	0	1	0	0	
MYO15A	51168	broad.mit.edu	37	17	18027810	18027810	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18027810G>A	uc010vxh.1	+	3	3961	c.3623G>A	c.(3622-3624)CGC>CAC	p.R1208H		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1208	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CACTCCATCCGCAACCTGCCA	0.642													9	26					0	0	1	0	0	
MYO15A	51168	broad.mit.edu	37	17	18036584	18036584	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18036584C>T	uc010vxh.1	+	11	4704	c.4366C>T	c.(4366-4368)CGC>TGC	p.R1456C		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1456	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					AGATGACTTTCGCCGGCTCCT	0.617													18	42					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	17	18344855	18344855	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18344855C>T	uc010vya.1	+	4		c.947C>T								Homo sapiens cDNA FLJ56791 complete cds, highly similar to Keratin, type I cytoskeletal 16.																		GAATGAGATGCGCAACCAGTA	0.607													8	31					0	0	1	0	0	
LOC220594	220594	broad.mit.edu	37	17	18416730	18416730	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18416730G>T	uc010cqe.2	-	5		c.2621C>A			LOC220594_uc010cqf.2_RNA|LOC220594_uc002gty.2_RNA	NR_003554				Homo sapiens mRNA for TL132.												0						TCATAGAAAAGAATGTAGGCA	0.413													34	57					1.60099e-16	1.84126e-16	1	1	0	
ZNF286B	729288	broad.mit.edu	37	17	18565271	18565271	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18565271A>C	uc010vyd.1	-	5	1799	c.1548T>G	c.(1546-1548)GTT>GTG	p.V516V		NM_001145045	NP_001138517	P0CG31	Z286B_HUMAN	zinc finger protein 286B	516	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTCAGTGTGAACTCTTTGAT	0.378													8	96					0	0	1	0	0	
FBXW10	10517	broad.mit.edu	37	17	18653227	18653227	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18653227A>G	uc002guk.2	+	3	1095	c.863A>G	c.(862-864)TAC>TGC	p.Y288C	FBXW10_uc002guj.2_Missense_Mutation_p.Y288C|FBXW10_uc002gul.2_Missense_Mutation_p.Y288C|FBXW10_uc010cqh.1_Missense_Mutation_p.Y288C	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	288	F-box.									ovary(1)	1						CTCTCCAAGTACATTCTAAGT	0.493													32	136					0	0	1	0	0	
FBXW10	10517	broad.mit.edu	37	17	18668094	18668094	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18668094C>T	uc002guk.2	+	8	1705	c.1473C>T	c.(1471-1473)TTC>TTT	p.F491F	FBXW10_uc002guj.2_Silent_p.F491F|FBXW10_uc002gul.2_Silent_p.F520F|FBXW10_uc010cqh.1_Silent_p.F491F	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	491										ovary(1)	1						CACGAATCTTCGGTGGTCACC	0.493													20	64					0	0	1	0	0	
FBXW10	10517	broad.mit.edu	37	17	18681858	18681858	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18681858G>T	uc002guk.2	+	14	2638	c.2406G>T	c.(2404-2406)AAG>AAT	p.K802N	FBXW10_uc002guj.2_Missense_Mutation_p.K801N|FBXW10_uc002gul.2_Missense_Mutation_p.K811N|FBXW10_uc010cqh.1_Missense_Mutation_p.K749N|FAM18B_uc002gum.2_5'Flank	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	802										ovary(1)	1						GTCACCCAAAGAAAAAGTCTT	0.418													16	33					1.87028e-06	1.9473e-06	1	1	0	
PRPSAP2	5636	broad.mit.edu	37	17	18785924	18785924	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18785924T>C	uc002gup.1	+	7	667	c.456T>C	c.(454-456)ATT>ATC	p.I152I	PRPSAP2_uc002guo.1_Silent_p.I66I|PRPSAP2_uc010vyi.1_Silent_p.I100I|PRPSAP2_uc010vyj.1_Silent_p.I66I|PRPSAP2_uc010vyk.1_Silent_p.I140I	NM_002767	NP_002758	O60256	KPRB_HUMAN	phosphoribosyl pyrophosphate	152					nucleotide biosynthetic process		enzyme inhibitor activity|magnesium ion binding|ribose phosphate diphosphokinase activity			skin(1)	1						AGAAGGAAATTCAGGGCTTCT	0.289													114	228					0	0	1	0	0	
SLC5A10	125206	broad.mit.edu	37	17	18862465	18862465	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:18862465C>T	uc002guu.1	+	3	242	c.201C>T	c.(199-201)TTC>TTT	p.F67F	SLC5A10_uc002gur.1_Silent_p.F11F|SLC5A10_uc002gut.1_Silent_p.F67F|SLC5A10_uc002guv.1_Silent_p.F67F|SLC5A10_uc010vyl.1_Silent_p.F67F	NM_001042450	NP_001035915	A0PJK1	SC5AA_HUMAN	solute carrier family 5 (sodium/glucose	67	Cytoplasmic (Potential).				sodium ion transport|transmembrane transport	integral to membrane	transporter activity			ovary(1)	1						CCTCCCTCTTCGCCAGCAGCG	0.627													11	26					0	0	1	0	0	
EPN2	22905	broad.mit.edu	37	17	19186779	19186779	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:19186779G>A	uc002gvd.3	+	3	795	c.347G>A	c.(346-348)GGC>GAC	p.G116D	EPN2_uc002gvc.2_Missense_Mutation_p.G116D|EPN2_uc010vyn.1_Missense_Mutation_p.G116D|EPN2_uc010cql.1_Intron|EPN2_uc002gve.3_Missense_Mutation_p.G116D|EPN2_uc002gvf.3_Intron|EPN2_uc010vyo.1_Intron|EPN2_uc002gvg.1_Missense_Mutation_p.G116D|EPN2_uc010vyp.1_Missense_Mutation_p.G116D|EPN2_uc010vyq.1_Missense_Mutation_p.G116D|EPN2_uc002gvh.1_Missense_Mutation_p.G116D	NM_014964	NP_055779	O95208	EPN2_HUMAN	epsin 2 isoform b	116	ENTH.				endocytosis		lipid binding			skin(1)	1	all_cancers(12;3.11e-05)|all_epithelial(12;0.00121)|Hepatocellular(7;0.00345)|Breast(13;0.143)					GACCGAGATGGCAAGGACCAG	0.562													35	55					0	0	1	0	0	
RNF112	7732	broad.mit.edu	37	17	19316718	19316718	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:19316718G>A	uc010vyw.1	+	5	913	c.714G>A	c.(712-714)GGG>GGA	p.G238G	RNF112_uc010vyu.1_3'UTR|RNF112_uc010vyv.1_Silent_p.G238G|RNF112_uc010vyx.1_Silent_p.G121G	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	238							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						GGAAAGAAGGGAAGAAGGTGA	0.622													10	15					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	17	19349775	19349775	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:19349775G>T	uc002gvw.2	-	1		c.404C>A								Homo sapiens mRNA for ribosomal protein S2, partial cds.																		TGTAGTCCCCGATAGCAACAA	0.597													11	15					7.03913e-09	7.52015e-09	1	1	0	
SLC47A1	55244	broad.mit.edu	37	17	19451350	19451350	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:19451350C>T	uc002gvy.1	+	4	445	c.359C>T	c.(358-360)GCG>GTG	p.A120V	SLC47A1_uc010vyy.1_RNA|SLC47A1_uc002gvx.2_Missense_Mutation_p.A120V|SLC47A1_uc010vyz.1_Missense_Mutation_p.A97V|SLC47A1_uc010cqp.1_Missense_Mutation_p.A120V|SLC47A1_uc010cqq.1_5'UTR	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	120	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					CAGCGGAGTGCGCTCGTCCTG	0.602													30	50					0	0	1	0	0	
ALDH3A1	218	broad.mit.edu	37	17	19641726	19641726	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:19641726G>A	uc010cqu.2	-	9	1587	c.1257C>T	c.(1255-1257)TTC>TTT	p.F419F	ALDH3A1_uc010vzd.1_Silent_p.F419F|ALDH3A1_uc002gwj.2_Silent_p.F419F|ALDH3A1_uc010cqv.2_Silent_p.F418F|ALDH3A1_uc002gwk.2_Silent_p.F536F|ALDH3A1_uc002gwl.1_Silent_p.F346F	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	419					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	AGAAAGTCTCGAAGCTCTTCT	0.612													46	88					0	0	1	0	0	
AKAP10	11216	broad.mit.edu	37	17	19839708	19839708	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:19839708A>C	uc002gwo.2	-	9	1495	c.1358T>G	c.(1357-1359)TTT>TGT	p.F453C	AKAP10_uc002gwp.1_Missense_Mutation_p.F453C|AKAP10_uc010cqw.1_Missense_Mutation_p.F453C	NM_007202	NP_009133	O43572	AKA10_HUMAN	A-kinase anchor protein 10 precursor	453	RGS 2.				blood coagulation|protein localization	cytosol|mitochondrion|plasma membrane	signal transducer activity			skin(1)	1	all_cancers(12;2.08e-05)|all_epithelial(12;0.00158)|Breast(13;0.165)					AACATCATCAAATCCAAGAGG	0.433													17	22					0	0	1	0	0	
CCDC144C	348254	broad.mit.edu	37	17	20224924	20224924	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:20224924G>A	uc010cqy.1	+	1		c.438G>A				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						GGTGGAGCACGTCTTGGTTCC	0.652													104	202					0	0	1	0	0	
CCDC144C	348254	broad.mit.edu	37	17	20241525	20241525	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:20241525C>T	uc010cqy.1	+	4		c.863C>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						TTAAAGGATGCGAAAATAAGC	0.343													3	8					0	0	1	0	0	
CCDC144C	348254	broad.mit.edu	37	17	20242933	20242933	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:20242933C>T	uc010cqy.1	+	5		c.1022C>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						AATTAAAACTCGTCATAAATG	0.368													30	63					0	0	1	0	0	
CCDC144C	348254	broad.mit.edu	37	17	20254668	20254668	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:20254668G>T	uc010cqy.1	+	8		c.1991G>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						CTGTTTATGAGAATTTTATGT	0.393													16	21					1.45105e-14	1.63981e-14	1	1	0	
LGALS9B	284194	broad.mit.edu	37	17	20354903	20354903	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:20354903C>T	uc002gxa.1	-	10	880	c.815G>A	c.(814-816)CGT>CAT	p.R272H	LGALS9B_uc002gwz.1_Missense_Mutation_p.R271H|LGALS9B_uc010vzh.1_Missense_Mutation_p.R184H	NM_001042685	NP_001036150	Q3B8N2	LEG9B_HUMAN	galectin-9 like	272	Galectin 2.						sugar binding			skin(1)	1						CTCATCAAAACGGGGGTTCAT	0.572													31	72					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	17	20744492	20744492	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:20744492C>T	uc010crb.1	+	1		c.152C>T								Homo sapiens cDNA clone IMAGE:6269068, partial cds.																		CAAGCCGGGGCCTGGTGGGGC	0.746													11	22					0	0	1	0	0	
DHRS7B	25979	broad.mit.edu	37	17	21094443	21094443	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:21094443G>T	uc002gyo.2	+	7	982	c.955G>T	c.(955-957)GAG>TAG	p.E319*		NM_015510	NP_056325	Q6IAN0	DRS7B_HUMAN	dehydrogenase/reductase (SDR family) member 7B	319	Peroxisomal (Potential).					integral to membrane|peroxisomal membrane	binding|oxidoreductase activity			pancreas(1)	1						GGCCAGAAAAGAGCGGAAATC	0.527													32	93					1.88708e-17	2.18811e-17	1	1	0	
TMEM11	8834	broad.mit.edu	37	17	21101654	21101654	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:21101654C>T	uc002gyp.2	-	2	1005	c.562G>A	c.(562-564)GAA>AAA	p.E188K	TMEM11_uc002gyq.2_3'UTR	NM_003876	NP_003867	P17152	TMM11_HUMAN	transmembrane protein 11	188					mitochondrion organization	integral to mitochondrial inner membrane|integral to plasma membrane	protein binding				0						GCATAGAGTTCGTAAATCTTC	0.532													51	111					0	0	1	0	0	
KCNJ12	3768	broad.mit.edu	37	17	21319340	21319340	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:21319340G>A	uc002gyv.1	+	3	1391	c.686G>A	c.(685-687)CGC>CAC	p.R229H		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	229	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	GCCCATGTGCGCGCGCAGCTC	0.642										Prostate(3;0.18)			8	75					0	0	1	0	0	
POLDIP2	26073	broad.mit.edu	37	17	26676190	26676190	+	Splice_Site	SNP	T	G	G	rs113989645		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:26676190T>G	uc002haz.2	-	13	1045	c.913_splice	c.e13-1	p.E305_splice	POLDIP2_uc010wag.1_Splice_Site	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		CACTGGTTCCTGTAAAGGTTT	0.552													11	20					0	0	1	0	0	
SARM1	23098	broad.mit.edu	37	17	26715444	26715444	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:26715444C>T	uc010crl.1	+	10	1876	c.1809C>T	c.(1807-1809)TTC>TTT	p.F603F	SARM1_uc010waj.1_RNA|SARM1_uc002hbe.1_Silent_p.F147F	NM_015077	NP_055892	Q6SZW1	SARM1_HUMAN	sterile alpha and TIR motif containing 1	603	TIR.				innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		CAGGCAAGTTCGAGGACAAAC	0.527													59	75					0	0	1	0	0	
SLC46A1	113235	broad.mit.edu	37	17	26731978	26731978	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:26731978C>T	uc002hbf.1	-	2	833	c.737G>A	c.(736-738)CGT>CAT	p.R246H	SLC46A1_uc002hbg.1_Missense_Mutation_p.R246H|SLC46A1_uc010wak.1_Missense_Mutation_p.R246H	NM_080669	NP_542400	Q96NT5	PCFT_HUMAN	proton-coupled folate transporter	246					cellular iron ion homeostasis|folic acid metabolic process	apical plasma membrane|cytoplasm|integral to membrane	folic acid binding|folic acid transporter activity|heme transporter activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Folic Acid(DB00158)	TCGGTGGTGACGGAACGTGAA	0.542													46	93					0	0	1	0	0	
RAB34	83871	broad.mit.edu	37	17	27041904	27041904	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:27041904C>A	uc002hce.2	-	9	1243	c.619G>T	c.(619-621)GAA>TAA	p.E207*	RAB34_uc002hcg.2_Nonsense_Mutation_p.E199*|RAB34_uc002hcf.2_Nonsense_Mutation_p.E208*|RAB34_uc010was.1_Nonsense_Mutation_p.E264*|RAB34_uc010wat.1_Nonsense_Mutation_p.E256*|RAB34_uc002hch.2_Nonsense_Mutation_p.E207*|RAB34_uc010wau.1_Nonsense_Mutation_p.E185*|RAB34_uc010wav.1_Intron	NM_031934	NP_114140	Q9BZG1	RAB34_HUMAN	Ras-related protein RAB34 isoform 1	207					protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	Lung NSC(42;0.00431)					AAGAAGAATTCTCGGACATTC	0.577													26	66					4.59853e-10	4.97375e-10	1	1	0	
PHF12	57649	broad.mit.edu	37	17	27239795	27239795	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:27239795G>A	uc002hdg.1	-	9	2324	c.1794C>T	c.(1792-1794)GTC>GTT	p.V598V	PHF12_uc010wbb.1_Silent_p.V580V|PHF12_uc002hdi.1_Silent_p.V594V|PHF12_uc002hdj.1_Silent_p.V598V|PHF12_uc010crw.1_Silent_p.V301V|PHF12_uc002hdh.1_Silent_p.V381V	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	598	Interaction with SIN3A.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			CAATGATGCCGACGGTGTGGT	0.637													24	59					0	0	1	0	0	
MYO18A	399687	broad.mit.edu	37	17	27493497	27493497	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:27493497C>T	uc002hdt.1	-	2	620	c.462G>A	c.(460-462)TCG>TCA	p.S154S	MYO18A_uc010csa.1_Silent_p.S154S|MYO18A_uc002hdu.1_Silent_p.S154S	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	154					anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CTGAGGGCGTCGAGGTTTCTG	0.617													10	22					0	0	1	0	0	
CRYBA1	1411	broad.mit.edu	37	17	27581350	27581350	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:27581350C>T	uc002hdw.2	+	6	638	c.631C>T	c.(631-633)CGC>TGC	p.R211C		NM_005208	NP_005199	P05813	CRBA1_HUMAN	crystallin, beta A3	211	Beta/gamma crystallin 'Greek key' 4.				visual perception	soluble fraction	structural constituent of eye lens				0			BRCA - Breast invasive adenocarcinoma(11;3.3e-05)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			CCAATCGATTCGCCGAATCCA	0.438													58	105					0	0	1	0	0	
EFCAB5	374786	broad.mit.edu	37	17	28405430	28405430	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:28405430C>T	uc002het.2	+	15	3127	c.2935C>T	c.(2935-2937)CGG>TGG	p.R979W	EFCAB5_uc010cse.2_Missense_Mutation_p.R734W|EFCAB5_uc010csf.2_Intron	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	979							calcium ion binding			ovary(1)|skin(1)	2						TTCTGCCAGGCGGAAATGGCT	0.493													33	63					0	0	1	0	0	
SLC6A4	6532	broad.mit.edu	37	17	28545146	28545146	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:28545146C>A	uc002hey.3	-	5	1232	c.688G>T	c.(688-690)GAA>TAA	p.E230*		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	230	Extracellular (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	GTGTAAAATTCTTCAGCAGGG	0.552													22	39					1.1804e-14	1.33524e-14	1	1	0	
CPD	1362	broad.mit.edu	37	17	28769342	28769342	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:28769342G>A	uc002hfb.1	+	10	2262	c.2247G>A	c.(2245-2247)TGG>TGA	p.W749*	CPD_uc010wbo.1_Nonsense_Mutation_p.W502*|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	749	Extracellular (Potential).|Carboxypeptidase-like 2.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						TGCAGGACTGGAACTATTTAC	0.353													34	69					0	0	1	0	0	
NF1	4763	broad.mit.edu	37	17	29541481	29541481	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:29541481A>C	uc002hgg.2	+	13	1738	c.1405A>C	c.(1405-1407)AAA>CAA	p.K469Q	NF1_uc002hge.1_Missense_Mutation_p.K469Q|NF1_uc002hgf.1_Missense_Mutation_p.K469Q|NF1_uc002hgh.2_Missense_Mutation_p.K469Q|NF1_uc010csn.1_Missense_Mutation_p.K329Q	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	469					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TCTTACATTTAAAGAAAAAGT	0.299			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			20	29					0	0	1	0	0	
NF1	4763	broad.mit.edu	37	17	29685995	29685995	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:29685995T>G	uc002hgg.2	+	56	8455	c.8122T>G	c.(8122-8124)TTT>GTT	p.F2708V	NF1_uc002hgh.2_Missense_Mutation_p.F2687V|NF1_uc010cso.2_Missense_Mutation_p.F896V|NF1_uc010wbt.1_Missense_Mutation_p.F186V|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2708					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGGTTTTGGTTTTAATGGCTT	0.294			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			12	30					0	0	1	0	0	
RAB11FIP4	84440	broad.mit.edu	37	17	29854863	29854863	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:29854863G>A	uc002hgn.1	+	11	1507	c.1278G>A	c.(1276-1278)GTG>GTA	p.V426V	RAB11FIP4_uc002hgo.2_Silent_p.V324V	NM_032932	NP_116321	Q86YS3	RFIP4_HUMAN	RAB11 family interacting protein 4 (class II)	426	Potential.|Necessary for interaction with RAB11A, subcellular location, homo- or heterooligomerization.				cytokinesis|interspecies interaction between organisms|protein transport	cleavage furrow|endocytic vesicle|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding			skin(1)	1		all_cancers(10;3.62e-13)|all_epithelial(10;0.000387)|all_lung(9;0.0132)|Breast(31;0.014)|all_hematologic(16;0.015)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0259)|Ovarian(249;0.0423)|Lung NSC(157;0.066)				TCGCCAGGGTGCAGCAGTTGG	0.493													4	10					0	0	1	0	0	
UTP6	55813	broad.mit.edu	37	17	30192440	30192440	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:30192440C>T	uc002hgr.2	-	18	1664	c.1581G>A	c.(1579-1581)GCG>GCA	p.A527A	UTP6_uc002hgq.2_Silent_p.A343A|UTP6_uc010cst.2_Silent_p.A376A	NM_018428	NP_060898	Q9NYH9	UTP6_HUMAN	hepatocellular carcinoma-associated antigen 66	527	HAT 5.				rRNA processing	nucleolus	binding			ovary(1)	1		all_hematologic(16;0.0149)|Ovarian(249;0.021)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|Breast(31;0.231)				CTCTTATGTTCGCCATATTGC	0.303													24	52					0	0	1	0	0	
SUZ12	23512	broad.mit.edu	37	17	30303573	30303573	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:30303573G>A	uc002hgs.2	+	8	1079	c.857G>A	c.(856-858)CGA>CAA	p.R286Q	SUZ12_uc002hgt.2_Missense_Mutation_p.R263Q	NM_015355	NP_056170	Q15022	SUZ12_HUMAN	joined to JAZF1	286					negative regulation of cell differentiation|transcription, DNA-dependent	ESC/E(Z) complex	histone methyltransferase activity|methylated histone residue binding|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.041)|Ovarian(249;0.182)|Breast(31;0.231)				AGAAGAAAACGAAATCGTGAG	0.348			T	JAZF1	endometrial stromal tumours								29	46					0	0	1	0	0	
C17orf75	64149	broad.mit.edu	37	17	30661574	30661574	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:30661574G>T	uc002hhg.2	-	8	816	c.785C>A	c.(784-786)ACT>AAT	p.T262N		NM_022344	NP_071739	Q9HAS0	NJMU_HUMAN	hypothetical protein LOC64149	262					spermatogenesis					ovary(1)	1		Breast(31;0.116)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.239)			GCACAAAGAAGTCATGGTGCC	0.498													21	16					1.00905e-13	1.13002e-13	1	1	0	
ZNF207	7756	broad.mit.edu	37	17	30678857	30678857	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:30678857G>T	uc002hhh.3	+	2	242	c.94G>T	c.(94-96)GCA>TCA	p.A32S	ZNF207_uc002hhj.3_Missense_Mutation_p.A32S|ZNF207_uc002hhi.3_Missense_Mutation_p.A32S|ZNF207_uc010csz.2_Missense_Mutation_p.A35S|ZNF207_uc002hhk.1_Missense_Mutation_p.A32S	NM_003457	NP_003448	O43670	ZN207_HUMAN	zinc finger protein 207 isoform a	32	C2H2-type 1.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Breast(31;0.116)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.239)			GCACCAAAAAGCAAAGCATTT	0.353													25	93					1.55469e-16	1.78953e-16	1	1	0	
MYO1D	4642	broad.mit.edu	37	17	31092067	31092067	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:31092067C>T	uc002hho.1	-	8	876	c.864G>A	c.(862-864)ACG>ACA	p.T288T	MYO1D_uc002hhp.1_Silent_p.T288T|MYO1D_uc010wcb.1_Silent_p.T288T	NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID	288	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			CAATAAGAGGCGTGTCACCAT	0.343													16	51					0	0	1	0	0	
TMEM132E	124842	broad.mit.edu	37	17	32953302	32953302	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:32953302G>A	uc002hif.2	+	2	552	c.224G>A	c.(223-225)CGC>CAC	p.R75H		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	75	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		TCTCTGCAGCGCTCCGAGCCC	0.697													4	10					0	0	1	0	0	
UNC45B	146862	broad.mit.edu	37	17	33513399	33513399	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:33513399T>C	uc002hja.2	+	20	2714	c.2617T>C	c.(2617-2619)TAC>CAC	p.Y873H	UNC45B_uc002hjb.2_Missense_Mutation_p.Y871H|UNC45B_uc002hjc.2_Missense_Mutation_p.Y871H|UNC45B_uc010cto.2_Missense_Mutation_p.Y792H	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	873					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				GGTCATTGCCTACAACCTACT	0.587													25	57					0	0	1	0	0	
AMAC1	146861	broad.mit.edu	37	17	33521053	33521053	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:33521053C>T	uc002hjd.2	-	1	360	c.274G>A	c.(274-276)GAC>AAC	p.D92N		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	92	DUF6 1.					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		AGAAGGGGGTCGCCACGCAGT	0.582													64	130					0	0	1	0	0	
SLFN11	91607	broad.mit.edu	37	17	33689883	33689883	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:33689883A>G	uc010ctp.2	-	4	1386	c.944T>C	c.(943-945)ATC>ACC	p.I315T	SLFN11_uc010ctq.2_Missense_Mutation_p.I315T|SLFN11_uc002hjh.3_Missense_Mutation_p.I315T|SLFN11_uc002hjg.3_Missense_Mutation_p.I315T|SLFN11_uc010ctr.2_Missense_Mutation_p.I315T	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	315						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ATTTACTCTGATCATGCAAGC	0.463													61	113					0	0	1	0	0	
SLFN12	55106	broad.mit.edu	37	17	33738393	33738393	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:33738393A>G	uc002hji.3	-	4	2078	c.1701T>C	c.(1699-1701)GAT>GAC	p.D567D	SLFN12_uc002hjj.3_Silent_p.D567D|SLFN12_uc010cts.2_Silent_p.D567D	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	567							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		ACATCTTTTTATCATTCTTCT	0.333													33	54					0	0	1	0	0	
PEX12	5193	broad.mit.edu	37	17	33903184	33903184	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:33903184T>G	uc002hjp.2	-	3	1313	c.697A>C	c.(697-699)AAC>CAC	p.N233H		NM_000286	NP_000277	O00623	PEX12_HUMAN	peroxisomal biogenesis factor 12	233	Peroxisomal matrix (Potential).				protein import into peroxisome matrix	integral to peroxisomal membrane	protein C-terminus binding|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGAGCTGAGTTTATCTTCTCA	0.408													28	65					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	17	34235884	34235884	+	RNA	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:34235884A>C	uc010ctx.1	-	1		c.1070T>G								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		GAGAAGTTTTAACCTCTGTAG	0.468													9	67					0	0	1	0	0	
CCL4L2	388372	broad.mit.edu	37	17	34539886	34539886	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:34539886T>G	uc010cuj.2	+	3	270	c.194T>G	c.(193-195)TTC>TGC	p.F65C	CCL4L2_uc002hlh.1_Intron|CCL4L2_uc002hlj.1_Intron|CCL4L2_uc002hli.1_RNA|CCL4L2_uc010cuk.1_RNA	NM_207007	NP_996890	Q8NHW4	CC4L_HUMAN	chemokine (C-C motif) ligand 4-like 2 precursor	65					chemotaxis|immune response|inflammatory response	extracellular space	chemokine activity				0		Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TTCTACGGATTCCAAACCAAA	0.383													30	9					0	0	1	0	0	
MYO19	80179	broad.mit.edu	37	17	34863332	34863332	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:34863332C>T	uc010wcy.1	-	17	2365	c.1373G>A	c.(1372-1374)GGC>GAC	p.G458D	MYO19_uc002hmw.2_Intron|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	458	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CCACTCCAGGCCCTCAACTGC	0.557													19	55					0	0	1	0	0	
LHX1	3975	broad.mit.edu	37	17	35299591	35299591	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:35299591G>A	uc002hnh.1	+	4	1766	c.770G>A	c.(769-771)CGG>CAG	p.R257Q		NM_005568	NP_005559	P48742	LHX1_HUMAN	LIM homeobox protein 1	257					cerebellar Purkinje cell differentiation|cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation|cervix development|comma-shaped body morphogenesis|dorsal/ventral pattern formation|ectoderm formation|embryonic pattern specification|embryonic retina morphogenesis in camera-type eye|embryonic viscerocranium morphogenesis|endoderm formation|forebrain regionalization|head development|motor axon guidance|negative regulation of transcription, DNA-dependent|nephric duct morphogenesis|nephron tubule epithelial cell differentiation|neuron migration|oviduct epithelium development|paramesonephric duct development|positive regulation of anterior head development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of transcription, DNA-dependent|post-embryonic development|primitive streak formation|renal vesicle morphogenesis|retina layer formation|S-shaped body morphogenesis|spinal cord association neuron differentiation|transcription from RNA polymerase II promoter|ureteric bud development|uterine epithelium development|vagina development	nucleus|protein complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(25;0.00607)				AGTCCGCGCCGGATGCGGCCG	0.711													5	4					0	0	1	0	0	
AATF	26574	broad.mit.edu	37	17	35378259	35378259	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:35378259G>A	uc002hni.2	+	10	1744	c.1493G>A	c.(1492-1494)CGA>CAA	p.R498Q	AATF_uc002hnj.2_RNA	NM_012138	NP_036270	Q9NY61	AATF_HUMAN	apoptosis antagonizing transcription factor	498					anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of superoxide anion generation|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to DNA damage stimulus	centrosome|focal adhesion|nucleolus	leucine zipper domain binding|sequence-specific DNA binding transcription factor activity				0		Breast(25;0.00607)				CAGAAGTTACGAAGCAAAATC	0.343													7	23					0	0	1	0	0	
ACACA	31	broad.mit.edu	37	17	35550339	35550339	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:35550339A>C	uc002hnm.2	-	36	4256	c.4065T>G	c.(4063-4065)TTT>TTG	p.F1355L	ACACA_uc002hnk.2_Missense_Mutation_p.F1277L|ACACA_uc002hnl.2_Missense_Mutation_p.F1297L|ACACA_uc002hnn.2_Missense_Mutation_p.F1355L|ACACA_uc002hno.2_Missense_Mutation_p.F1392L|ACACA_uc010cuy.2_Missense_Mutation_p.F49L	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1355					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	GGAATGTAAAAAATTTAGGGA	0.338													20	36					0	0	1	0	0	
SYNRG	11276	broad.mit.edu	37	17	35913722	35913722	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:35913722A>C	uc002hoa.2	-	14	2186	c.2103T>G	c.(2101-2103)TCT>TCG	p.S701S	SYNRG_uc010wde.1_Silent_p.S623S|SYNRG_uc010wdf.1_Silent_p.S623S|SYNRG_uc002hoc.2_Silent_p.S622S|SYNRG_uc002hoe.2_Silent_p.S623S|SYNRG_uc002hod.2_Silent_p.S623S|SYNRG_uc010wdg.1_Silent_p.S540S|SYNRG_uc002hob.2_Silent_p.S701S|SYNRG_uc002hof.2_Silent_p.S413S|SYNRG_uc010cvd.1_Silent_p.S501S	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	701	Interaction with A1P1G1 and A1P1G2.				endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						CAGATGAAATAGAGCTATTAC	0.453													34	57					0	0	1	0	0	
GPR179	440435	broad.mit.edu	37	17	36484565	36484565	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:36484565G>A	uc002hpz.2	-	11	4908	c.4887C>T	c.(4885-4887)ATC>ATT	p.I1629I		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1629	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TGACATCTTCGATTTCCGATT	0.512													54	89					0	0	1	0	0	
GPR179	440435	broad.mit.edu	37	17	36485203	36485203	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:36485203C>A	uc002hpz.2	-	11	4270	c.4249G>T	c.(4249-4251)GAA>TAA	p.E1417*		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1417	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GGTTTCTGTTCTTTCCAAAAG	0.537													41	79					1.04594e-18	1.2237e-18	1	1	0	
FBXO47	494188	broad.mit.edu	37	17	37101317	37101317	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:37101317C>T	uc002hrc.2	-	7	889	c.689G>A	c.(688-690)CGA>CAA	p.R230Q		NM_001008777	NP_001008777	Q5MNV8	FBX47_HUMAN	F-box protein 47	230											0						AGAATCACTTCGATGTGTCCA	0.388													31	59					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	17	37209287	37209287	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:37209287C>A	uc002hrd.1	+	5		c.3409C>A								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		ATGTTATTTTCTTCCCTTCCC	0.478													7	10					0.00198382	0.00200883	1	1	0	
FBXL20	84961	broad.mit.edu	37	17	37455249	37455249	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:37455249G>T	uc010wed.1	-	5	544	c.323C>A	c.(322-324)GCA>GAA	p.A108E	FBXL20_uc002hrt.2_Missense_Mutation_p.A108E|FBXL20_uc010cvu.2_Missense_Mutation_p.A108E	NM_032875	NP_116264	Q96IG2	FXL20_HUMAN	F-box and leucine-rich repeat protein 20	108	LRR 2.					cytoplasm				ovary(1)	1			LUAD - Lung adenocarcinoma(14;0.146)			TTACCTTAATGCATTGTCTCC	0.388													40	67					6.5261e-18	7.59833e-18	1	1	0	
MED1	5469	broad.mit.edu	37	17	37565245	37565245	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:37565245G>A	uc002hrv.3	-	17	3441	c.3229C>T	c.(3229-3231)CCT>TCT	p.P1077S	MED1_uc010wee.1_Missense_Mutation_p.P905S|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	1077					androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		TGAGAGGAAGGCTTGCCCACC	0.517										HNSCC(31;0.082)			34	88					0	0	1	0	0	
CDK12	51755	broad.mit.edu	37	17	37650863	37650863	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:37650863C>T	uc010cvv.2	+	5	2921	c.2335C>T	c.(2335-2337)CGT>TGT	p.R779C	CDK12_uc010wef.1_Missense_Mutation_p.R778C|CDK12_uc002hrw.3_Missense_Mutation_p.R779C	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	779	Protein kinase.				mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						CAAAATCCTTCGTCAGTTAat	0.279										TCGA Ovarian(9;0.13)			6	28					0	0	1	0	0	
GSDMB	55876	broad.mit.edu	37	17	38068679	38068679	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:38068679C>A	uc010cwj.2	-	2	312	c.307G>T	c.(307-309)GAA>TAA	p.E103*	GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Nonsense_Mutation_p.E103*|GSDMB_uc002hth.2_Nonsense_Mutation_p.E103*|GSDMB_uc010wem.1_Nonsense_Mutation_p.E103*	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	103						cytoplasm				breast(1)|pancreas(1)	2						ATTGTTATTTCTTTGGGTAAT	0.423													22	55					2.27731e-05	2.34574e-05	1	1	0	
THRA	7067	broad.mit.edu	37	17	38249572	38249572	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:38249572G>A	uc002htw.2	+	10	1893	c.1410G>A	c.(1408-1410)CCG>CCA	p.P470P	THRA_uc002htx.2_Silent_p.P431P|NR1D1_uc002htz.1_Intron|NR1D1_uc010cwq.1_Intron	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	470					negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	CGGACTCCCCGAGCTCCTCTG	0.652													12	27					0	0	1	0	0	
CCR7	1236	broad.mit.edu	37	17	38711747	38711747	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:38711747A>C	uc002huw.2	-	3	447	c.384T>G	c.(382-384)TTT>TTG	p.F128L		NM_001838	NP_001829	P32248	CCR7_HUMAN	chemokine (C-C motif) receptor 7 precursor	128	Extracellular (Potential).				cell maturation|immunological synapse formation|inflammatory response|interleukin-12 secretion|lymphocyte migration into lymph node|positive regulation of dendritic cell antigen processing and presentation|positive regulation of glycoprotein biosynthetic process|positive regulation of humoral immune response|positive regulation of hypersensitivity|positive regulation of interleukin-12 production|positive regulation of neutrophil chemotaxis|regulation of interferon-gamma production|regulation of interleukin-1 beta secretion|T cell costimulation	integral to membrane|intracellular	C-C chemokine receptor activity|chemokine (C-C motif) ligand 19 binding|chemokine (C-C motif) ligand 21 binding			breast(1)	1		Breast(137;0.000496)				TGAGCTTGCAAAAGTGGACAC	0.562													6	38					0	0	1	0	0	
KRT25	147183	broad.mit.edu	37	17	38907471	38907471	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:38907471G>A	uc002hve.2	-	4	838	c.777C>T	c.(775-777)TAC>TAT	p.Y259Y		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	259	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				CAAGGGCTTCGTACTCAGCTC	0.572													27	54					0	0	1	0	0	
KRT26	353288	broad.mit.edu	37	17	38926007	38926007	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:38926007A>G	uc002hvf.2	-	5	1014	c.968T>C	c.(967-969)GTG>GCG	p.V323A		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	323	Rod.|Coil 2.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				CCTACGTACCACAGCCATGAG	0.393													36	73					0	0	1	0	0	
KRT27	342574	broad.mit.edu	37	17	38938569	38938569	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:38938569G>A	uc002hvg.2	-	1	218	c.177C>T	c.(175-177)GGC>GGT	p.G59G		NM_181537	NP_853515	Q7Z3Y8	K1C27_HUMAN	keratin 27	59	Head.|Gly-rich.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.000812)				CCAGACCTCCGCCATAGCCTC	0.597													36	53					0	0	1	0	0	
KRT37	8688	broad.mit.edu	37	17	39580043	39580043	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:39580043C>T	uc002hwp.1	-	2	593	c.546G>A	c.(544-546)GCG>GCA	p.A182A	uc002hwo.1_RNA	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	182	Rod.|Coil 1B.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				CAGCCAGCTTCGCGTTGTCAA	0.328													26	44					0	0	1	0	0	
KRT35	3886	broad.mit.edu	37	17	39633950	39633950	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:39633950C>T	uc002hws.2	-	6	1083	c.1040G>A	c.(1039-1041)CGC>CAC	p.R347H		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	347	Rod.|Coil 2.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				GGAGCTATAGCGGGCCTCCGT	0.592													16	37					0	0	1	0	0	
KRT35	3886	broad.mit.edu	37	17	39634617	39634617	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:39634617C>T	uc002hws.2	-	5	1038	c.995G>A	c.(994-996)AGC>AAC	p.S332N		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	332	Rod.|Coil 2.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				GCTCACCATGCTGTGCTGAGC	0.617													10	33					0	0	1	0	0	
KRT13	3860	broad.mit.edu	37	17	39661466	39661466	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:39661466C>T	uc002hwu.1	-	1	400	c.337G>A	c.(337-339)GAC>AAC	p.D113N	KRT13_uc002hwv.1_Missense_Mutation_p.D113N|KRT13_uc002hww.2_Missense_Mutation_p.D6N|KRT13_uc010wfr.1_Missense_Mutation_p.D6N|KRT13_uc010cxo.2_Missense_Mutation_p.D113N|KRT13_uc002hwx.1_Missense_Mutation_p.D101N	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	113	Coil 1A.|Rod.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				GCCAGGCGGTCGTTGAGGTTC	0.438													34	78					0	0	1	0	0	
ACLY	47	broad.mit.edu	37	17	40065299	40065299	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:40065299C>T	uc002hyg.2	-	6	722	c.559G>A	c.(559-561)GGC>AGC	p.G187S	ACLY_uc002hyh.2_Missense_Mutation_p.G187S|ACLY_uc002hyi.2_Missense_Mutation_p.G241S|ACLY_uc010wfx.1_Missense_Mutation_p.G241S|ACLY_uc010wfy.1_Intron	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	187					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				TTGAAGAGGCCGGAGATAAAA	0.577													13	12					0	0	1	0	0	
RAB5C	5878	broad.mit.edu	37	17	40278791	40278791	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:40278791C>T	uc002hyz.2	-	6	834	c.517G>A	c.(517-519)GAA>AAA	p.E173K	RAB5C_uc002hza.2_Missense_Mutation_p.E173K|RAB5C_uc010cxx.2_Missense_Mutation_p.E206K|RAB5C_uc010cxy.2_Missense_Mutation_p.E85K	NM_201434	NP_958842	P51148	RAB5C_HUMAN	RAB5C, member RAS oncogene family isoform a	173					protein transport|small GTPase mediated signal transduction	early endosome membrane|melanosome|plasma membrane	GTP binding|GTPase activity|protein binding			large_intestine(1)|skin(1)	2		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		ATGAAGATTTCGTTCACGTTC	0.527													41	88					0	0	1	0	0	
KCNH4	23415	broad.mit.edu	37	17	40330965	40330965	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:40330965G>T	uc002hzb.2	-	2	489	c.156C>A	c.(154-156)CTC>CTA	p.L52L		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	52	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		CGTAGCCTGTGAGCTCGCAGA	0.612													21	38					2.4624e-09	2.64481e-09	1	1	0	
HCRT	3060	broad.mit.edu	37	17	40336439	40336439	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:40336439C>A	uc002hzc.1	-	2	216	c.129G>T	c.(127-129)AAG>AAT	p.K43N		NM_001524	NP_001515	O43612	OREX_HUMAN	orexin precursor	43					neuropeptide signaling pathway	cell junction|extracellular region|rough endoplasmic reticulum|synaptic vesicle					0		all_cancers(22;1.39e-06)|all_epithelial(22;9.98e-06)|Breast(137;0.000143)|Ovarian(249;0.0221)|Myeloproliferative disorder(1115;0.0255)|Colorectal(1115;0.069)		BRCA - Breast invasive adenocarcinoma(366;0.124)		AAGAGCAAGTCTTTTGACGAC	0.622													10	9					3.07112e-06	3.18826e-06	1	1	0	
STAT5B	6777	broad.mit.edu	37	17	40354820	40354820	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:40354820G>A	uc002hzh.2	-	17	2253	c.2084C>T	c.(2083-2085)GCT>GTT	p.A695V		NM_012448	NP_036580	P51692	STA5B_HUMAN	signal transducer and activator of transcription	695					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|JAK-STAT cascade involved in growth hormone signaling pathway|oxaloacetate metabolic process|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|glucocorticoid receptor binding|sequence-specific DNA binding transcription factor activity			ovary(3)|lung(2)|skin(1)	6		all_cancers(22;4.15e-07)|all_epithelial(22;2.83e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.135)	Dasatinib(DB01254)	TCCATCAACAGCTTTAGCTGC	0.453													54	82					0	0	1	0	0	
STAT5A	6776	broad.mit.edu	37	17	40456604	40456604	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:40456604G>T	uc002hzj.1	+	12	1956	c.1314G>T	c.(1312-1314)GAG>GAT	p.E438D	STAT5A_uc010cya.1_Missense_Mutation_p.E438D|STAT5A_uc010cyb.1_Missense_Mutation_p.E438D|STAT5A_uc010cyc.1_Missense_Mutation_p.E408D|STAT5A_uc010cyd.1_5'Flank|STAT5A_uc010cye.1_5'Flank	NM_003152	NP_003143	P42229	STA5A_HUMAN	signal transducer and activator of transcription	438					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|oxaloacetate metabolic process|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1		all_cancers(22;1.56e-06)|all_epithelial(22;3.17e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		TGACAGAGGAGAAGTTCACAG	0.602													27	52					2.79863e-10	3.03339e-10	1	1	0	
CNTNAP1	8506	broad.mit.edu	37	17	40839829	40839829	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:40839829G>A	uc002iay.2	+	8	1352	c.1136G>A	c.(1135-1137)CGC>CAC	p.R379H	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	379	Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		GGTTTCCCACGCCGTGGCCGC	0.637													45	82					0	0	1	0	0	
BRCA1	672	broad.mit.edu	37	17	41244869	41244869	+	Missense_Mutation	SNP	C	A	A	rs80357891		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:41244869C>A	uc002icq.2	-	10	2911	c.2679G>T	c.(2677-2679)AAG>AAT	p.K893N	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.K822N|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.K846N|BRCA1_uc002ict.2_Missense_Mutation_p.K893N|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.K893N|BRCA1_uc002ide.1_Missense_Mutation_p.K724N|BRCA1_uc010cyy.1_Missense_Mutation_p.K893N|BRCA1_uc010whs.1_Missense_Mutation_p.K893N|BRCA1_uc010cyz.2_Missense_Mutation_p.K846N|BRCA1_uc010cza.2_Missense_Mutation_p.K867N|BRCA1_uc010wht.1_Missense_Mutation_p.K597N	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	893					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GACTTTGTTTCTTTAAGGACC	0.393			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			50	74					2.13384e-23	2.55524e-23	1	1	0	
MEOX1	4222	broad.mit.edu	37	17	41720906	41720906	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:41720906G>A	uc002idz.2	-	2	621	c.592C>T	c.(592-594)CGG>TGG	p.R198W	MEOX1_uc002iea.2_Intron|MEOX1_uc002ieb.2_Missense_Mutation_p.R83W	NM_004527	NP_004518	P50221	MEOX1_HUMAN	mesenchyme homeobox 1 isoform 1	198	Homeobox.					nucleus	sequence-specific DNA binding				0		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0753)		CTGCGGAGCCGAGTCAGGTAG	0.522													5	13					0	0	1	0	0	
CD300LG	146894	broad.mit.edu	37	17	41925966	41925966	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:41925966C>T	uc002iem.2	+	2	125	c.84C>T	c.(82-84)TTC>TTT	p.F28F	CD300LG_uc002iek.1_Silent_p.F28F|CD300LG_uc002iel.1_Silent_p.F28F|CD300LG_uc010czk.2_Silent_p.F28F|CD300LG_uc010wil.1_Silent_p.F28F|CD300LG_uc010czl.2_Silent_p.F28F	NM_145273	NP_660316	Q6UXG3	CLM9_HUMAN	CD300 molecule-like family member g precursor	28	Extracellular (Potential).|Ig-like V-type.					apical plasma membrane|basolateral plasma membrane|integral to membrane|multivesicular body membrane	receptor activity				0		Breast(137;0.0199)		BRCA - Breast invasive adenocarcinoma(366;0.115)		TCAGCGGGTTCGAAGGGGACA	0.567													40	70					0	0	1	0	0	
ITGA2B	3674	broad.mit.edu	37	17	42452077	42452077	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:42452077A>G	uc002igt.1	-	28	2925	c.2893T>C	c.(2893-2895)TCC>CCC	p.S965P	ITGA2B_uc002igu.1_3'UTR	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	965	Extracellular (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	TAGGGGAGGGAGGACACGTTG	0.612													14	37					0	0	1	0	0	
FZD2	2535	broad.mit.edu	37	17	42635315	42635315	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:42635315G>A	uc002igx.1	+	1	391	c.259G>A	c.(259-261)GAA>AAA	p.E87K		NM_001466	NP_001457	Q14332	FZD2_HUMAN	frizzled 2 precursor	87	FZ.|Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|positive regulation of cGMP metabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GTGCTCGCCCGAACTGCGCTT	0.642													50	86					0	0	1	0	0	
C17orf104	284071	broad.mit.edu	37	17	42745389	42745389	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:42745389T>G	uc010czv.2	+	5	2110	c.2110T>G	c.(2110-2112)TTG>GTG	p.L704V	C17orf104_uc002igy.1_Missense_Mutation_p.L538V|C17orf104_uc002igz.3_Missense_Mutation_p.L538V|C17orf104_uc010wja.1_RNA|C17orf104_uc002iha.2_Missense_Mutation_p.L538V	NM_001145080	NP_001138552	A2RUB1	CQ104_HUMAN	hypothetical protein LOC284071	704										central_nervous_system(1)	1						TGTTCCACTGTTGGATTCCTA	0.383													13	25					0	0	1	0	0	
ADAM11	4185	broad.mit.edu	37	17	42850282	42850282	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:42850282A>G	uc002ihh.2	+	9	736	c.736A>G	c.(736-738)ATC>GTC	p.I246V	ADAM11_uc010wjd.1_Missense_Mutation_p.I46V	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	246	Extracellular (Potential).|Peptidase M12B.				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				GCTAATTGTGATCAACGACCA	0.612													27	42					0	0	1	0	0	
GJC1	10052	broad.mit.edu	37	17	42882006	42882006	+	Missense_Mutation	SNP	C	T	T	rs146820007		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:42882006C>T	uc002ihj.2	-	2	1691	c.1180G>A	c.(1180-1182)GTC>ATC	p.V394I	GJC1_uc002ihk.2_Missense_Mutation_p.V394I|GJC1_uc002ihl.2_Missense_Mutation_p.V394I|GJC1_uc010czx.2_Missense_Mutation_p.V394I|GJC1_uc010czy.1_Missense_Mutation_p.V255I	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	394	Cytoplasmic (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				TAAATCCAGACGGAGGTCTTC	0.488													52	102					0	0	1	0	0	
HIGD1B	51751	broad.mit.edu	37	17	42926632	42926632	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:42926632C>T	uc002ihm.2	+	2	353	c.111C>T	c.(109-111)GGC>GGT	p.G37G		NM_016438	NP_057522	Q9P298	HIG1B_HUMAN	HIG1 hypoxia inducible domain family, member 1B	37	HIG1.|Helical; (Potential).					integral to membrane					0		Prostate(33;0.109)				GCTTAGGAGGCTGCTTGGTGG	0.582													33	38					0	0	1	0	0	
GFAP	2670	broad.mit.edu	37	17	42992513	42992513	+	Silent	SNP	G	A	A	rs115282391	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:42992513G>A	uc002ihq.2	-	1	402	c.342C>T	c.(340-342)GAC>GAT	p.D114D	GFAP_uc002ihr.2_Silent_p.D114D|GFAP_uc010wjg.1_RNA	NM_002055	NP_002046	P14136	GFAP_HUMAN	glial fibrillary acidic protein isoform 1	114	Linker 1.|Rod.					cytoplasm|intermediate filament	structural constituent of cytoskeleton			ovary(1)|pancreas(1)	2		Prostate(33;0.0959)				CCTGGTAGACGTCTGCCAGCT	0.627													32	50					0	0	1	0	0	
KIF18B	146909	broad.mit.edu	37	17	43012671	43012671	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:43012671G>A	uc010wji.1	-	3	528	c.427C>T	c.(427-429)CGC>TGC	p.R143C	KIF18B_uc002iht.2_Missense_Mutation_p.R143C|KIF18B_uc010wjh.1_Missense_Mutation_p.R143C	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				TCCTGCTGGCGGGCCTCCAGG	0.662													14	26					0	0	1	0	0	
C17orf46	124783	broad.mit.edu	37	17	43332645	43332645	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:43332645C>T	uc002iis.1	-	4	1000	c.904G>A	c.(904-906)GAA>AAA	p.E302K	LOC100133991_uc010dah.2_Intron|C17orf46_uc010wjk.1_Missense_Mutation_p.E281K	NM_152343	NP_689556	Q96LK8	CQ046_HUMAN	hypothetical protein LOC124783	302										large_intestine(1)|ovary(1)	2						GCTCTGGCTTCGCGTGGTTTC	0.557													76	115					0	0	1	0	0	
CRHR1	1394	broad.mit.edu	37	17	43907879	43907879	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:43907879G>A	uc010dap.2	+	8	1004	c.739G>A	c.(739-741)GTG>ATG	p.V247M	CRHR1_uc010wjx.1_Missense_Mutation_p.V43M|CRHR1_uc002ijp.2_Missense_Mutation_p.V117M|CRHR1_uc002ijm.2_Missense_Mutation_p.V218M|CRHR1_uc002ijn.2_Missense_Mutation_p.V178M|CRHR1_uc010dar.2_Missense_Mutation_p.V218M|CRHR1_uc010dao.2_Missense_Mutation_p.V117M|CRHR1_uc010daq.2_Missense_Mutation_p.V43M	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	247	Cytoplasmic (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		CACAGCCATCGTGCTCACCTA	0.617													53	107					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	17	45105663	45105663	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:45105663T>C	uc010wki.1	+	5		c.1265T>C								Homo sapiens cDNA FLJ42521 fis, clone BRACE3000973.																		AGTTGCAATGTAATTACAGAA	0.289													62	136					0	0	1	0	0	
C17orf57	124989	broad.mit.edu	37	17	45455139	45455139	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:45455139C>A	uc002iln.2	+	13	1791	c.1380C>A	c.(1378-1380)TTC>TTA	p.F460L	C17orf57_uc002ilm.2_Missense_Mutation_p.F364L|C17orf57_uc010daz.1_Missense_Mutation_p.F412L	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	460							calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						TAGAAAACTTCTGTGAAGCTA	0.294													23	14					3.01185e-09	3.22946e-09	1	1	0	
Unknown	0	broad.mit.edu	37	17	45560427	45560427	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:45560427T>C	uc002ilp.1	-	4		c.426A>G			uc002ilq.2_RNA					Homo sapiens cDNA clone IMAGE:5266250, containing frame-shift errors.																		TATTTTAAAGTTGGCATCATA	0.363													38	94					0	0	1	0	0	
KPNB1	3837	broad.mit.edu	37	17	45734311	45734311	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:45734311T>C	uc002ilt.1	+	4	704	c.368T>C	c.(367-369)GTA>GCA	p.V123A	KPNB1_uc010wkw.1_5'UTR|KPNB1_uc010wkx.1_5'UTR	NM_002265	NP_002256	Q14974	IMB1_HUMAN	karyopherin beta 1	123					DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|protein import into nucleus, translocation|ribosomal protein import into nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein domain specific binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GAGATCCCAGTAAACCAGTGG	0.493													19	40					0	0	1	0	0	
TBX21	30009	broad.mit.edu	37	17	45822165	45822165	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:45822165T>C	uc002ilv.1	+	6	1252	c.1041T>C	c.(1039-1041)TGT>TGC	p.C347C		NM_013351	NP_037483	Q9UL17	TBX21_HUMAN	T-box 21	347					lymphocyte migration|multicellular organismal development|positive regulation of transcription, DNA-dependent|response to virus	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						GACCCAACTGTCAATTCCTTG	0.537													62	95					0	0	1	0	0	
CDK5RAP3	80279	broad.mit.edu	37	17	46058857	46058857	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:46058857A>G	uc002imr.2	+	14	1594	c.1510A>G	c.(1510-1512)ACC>GCC	p.T504A	CDK5RAP3_uc010wlc.1_Missense_Mutation_p.T524A|CDK5RAP3_uc002imq.1_Intron|CDK5RAP3_uc002imu.2_Missense_Mutation_p.T348A|CDK5RAP3_uc002ims.2_Missense_Mutation_p.T417A|CDK5RAP3_uc002imv.2_Missense_Mutation_p.T348A|CDK5RAP3_uc002imw.2_Missense_Mutation_p.T346A|CDK5RAP3_uc002imx.2_Missense_Mutation_p.T279A	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	504					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						CCTGATGGGAACCTCTCTGTG	0.552													34	59					0	0	1	0	0	
IGF2BP1	10642	broad.mit.edu	37	17	47123723	47123723	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:47123723C>A	uc002iom.2	+	14	1963	c.1629C>A	c.(1627-1629)TTC>TTA	p.F543L	IGF2BP1_uc010dbj.2_Missense_Mutation_p.F404L	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	543	Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).|KH 4.				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						TCGGACATTTCTATGCCAGTC	0.522													27	27					2.44723e-14	2.76215e-14	1	1	0	
B4GALNT2	124872	broad.mit.edu	37	17	47243530	47243530	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:47243530C>A	uc002ion.2	+	9	1248	c.1189C>A	c.(1189-1191)CTC>ATC	p.L397I	B4GALNT2_uc010wlt.1_Missense_Mutation_p.L311I|B4GALNT2_uc010wlu.1_Missense_Mutation_p.L337I	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	397	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			CAAATACGTTCTCTGGGTGGA	0.468													27	69					4.59853e-10	4.97375e-10	1	1	0	
ZNF652	22834	broad.mit.edu	37	17	47388809	47388809	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:47388809C>T	uc002iov.3	-	5	1638	c.1174G>A	c.(1174-1176)GAA>AAA	p.E392K	ZNF652_uc002iow.2_Missense_Mutation_p.E392K|ZNF652_uc002iou.3_RNA	NM_001145365	NP_001138837	Q9Y2D9	ZN652_HUMAN	zinc finger protein 652	392	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_cancers(4;6.81e-14)|Breast(4;4.97e-29)|all_epithelial(4;1.53e-17)		BRCA - Breast invasive adenocarcinoma(1;3.1e-14)|Epithelial(5;2.92e-06)|all cancers(6;3.15e-05)			TGAAACCTTTCGTCACAGTTC	0.443													71	145					0	0	1	0	0	
SLC35B1	10237	broad.mit.edu	37	17	47785121	47785121	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:47785121A>C	uc002iph.1	-	1	162	c.75T>G	c.(73-75)TAT>TAG	p.Y25*	SLC35B1_uc002ipi.1_5'UTR|SLC35B1_uc002ipj.1_Intron|SLC35B1_uc010wly.1_Nonsense_Mutation_p.Y25*	NM_005827	NP_005818	P78383	S35B1_HUMAN	solute carrier family 35, member B1	25	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	UDP-galactose transmembrane transporter activity				0						CATAGTAAAAATAGCAGACAA	0.637											OREG0024545	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	25					0	0	1	0	0	
MYST2	11143	broad.mit.edu	37	17	47874139	47874139	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:47874139C>A	uc002ipm.2	+	3	317	c.191C>A	c.(190-192)TCT>TAT	p.S64Y	MYST2_uc002ipl.1_Missense_Mutation_p.S64Y|MYST2_uc010wma.1_Intron|MYST2_uc010wmb.1_Missense_Mutation_p.S64Y|MYST2_uc010wmc.1_Intron|MYST2_uc010wmd.1_5'UTR|MYST2_uc010wme.1_5'UTR	NM_007067	NP_008998	O95251	MYST2_HUMAN	MYST histone acetyltransferase 2	64					DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	histone acetyltransferase activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						AATCTGCAGTCTTTTGGCACT	0.418													55	101					1.46156e-29	1.78357e-29	1	1	0	
MYST2	11143	broad.mit.edu	37	17	47893237	47893237	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:47893237C>A	uc002ipm.2	+	8	1051	c.925C>A	c.(925-927)CTT>ATT	p.L309I	MYST2_uc002ipl.1_Missense_Mutation_p.L279I|MYST2_uc010wma.1_Missense_Mutation_p.L170I|MYST2_uc010wmb.1_Missense_Mutation_p.L199I|MYST2_uc010wmc.1_Missense_Mutation_p.L140I|MYST2_uc010wmd.1_Missense_Mutation_p.L153I|MYST2_uc010wme.1_Missense_Mutation_p.L123I|MYST2_uc010wmf.1_5'UTR|MYST2_uc010wmg.1_5'UTR	NM_007067	NP_008998	O95251	MYST2_HUMAN	MYST histone acetyltransferase 2	309					DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	histone acetyltransferase activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TGACTTGGATCTTTTCCGAAG	0.468													33	48					9.65963e-10	1.04203e-09	1	1	0	
DLX3	1747	broad.mit.edu	37	17	48070831	48070831	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:48070831T>G	uc002ipy.2	-	2	675	c.449A>C	c.(448-450)AAG>ACG	p.K150T		NM_005220	NP_005211	O60479	DLX3_HUMAN	distal-less homeobox 3	150	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTACTGGGCCTTCTGGAAGCG	0.687													7	19					0	0	1	0	0	
ACSF2	80221	broad.mit.edu	37	17	48538054	48538054	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:48538054C>T	uc002iqu.2	+	2	249	c.145C>T	c.(145-147)CGC>TGC	p.R49C	ACSF2_uc010wml.1_Missense_Mutation_p.R49C|ACSF2_uc010wmm.1_Missense_Mutation_p.R74C|ACSF2_uc010wmn.1_Missense_Mutation_p.R49C|ACSF2_uc010wmo.1_Intron	NM_025149	NP_079425	Q96CM8	ACSF2_HUMAN	acyl-CoA synthetase family member 2 precursor	49					fatty acid metabolic process	mitochondrion	ATP binding|ligase activity				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			AGAGGTGGATCGCATGGTCTC	0.587													10	20					0	0	1	0	0	
ACSF2	80221	broad.mit.edu	37	17	48551589	48551589	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:48551589C>T	uc002iqu.2	+	15	1862	c.1758C>T	c.(1756-1758)ATC>ATT	p.I586I	ACSF2_uc010wml.1_Silent_p.I543I|ACSF2_uc010wmm.1_Silent_p.I611I|ACSF2_uc010wmn.1_Silent_p.I573I|ACSF2_uc010wmo.1_Silent_p.I426I|ACSF2_uc010dbt.1_Silent_p.I90I	NM_025149	NP_079425	Q96CM8	ACSF2_HUMAN	acyl-CoA synthetase family member 2 precursor	586					fatty acid metabolic process	mitochondrion	ATP binding|ligase activity				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			CGAAGTACATCGTGTTTGTCA	0.592													21	153					0	0	1	0	0	
ANKRD40	91369	broad.mit.edu	37	17	48773432	48773432	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:48773432G>A	uc002iso.2	-	5	1288	c.1033C>T	c.(1033-1035)CTG>TTG	p.L345L		NM_052855	NP_443087	Q6AI12	ANR40_HUMAN	ankyrin repeat domain 40	345											0			BRCA - Breast invasive adenocarcinoma(22;2.03e-09)			TTTCTGAACAGAAAATTATTT	0.388													42	65					0	0	1	0	0	
MBTD1	54799	broad.mit.edu	37	17	49280149	49280149	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:49280149T>C	uc002itr.3	-	10	1320	c.976A>G	c.(976-978)ACA>GCA	p.T326A	MBTD1_uc002itp.3_Missense_Mutation_p.T162A|MBTD1_uc002itq.3_Missense_Mutation_p.T326A	NM_017643	NP_060113	Q05BQ5	MBTD1_HUMAN	mbt domain containing 1	326	MBT 2.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(22;1.54e-08)			AAGTCATCTGTTCTATCTTCG	0.423													91	129					0	0	1	0	0	
TMEM100	55273	broad.mit.edu	37	17	53798220	53798220	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:53798220A>G	uc002iuj.3	-	2	523	c.212T>C	c.(211-213)GTC>GCC	p.V71A	TMEM100_uc002iuk.3_Missense_Mutation_p.V71A	NM_018286	NP_060756	Q9NV29	TM100_HUMAN	transmembrane protein 100	71	Helical; (Potential).					integral to membrane					0						CACCGCGGTGACCACGATGCC	0.527													39	104					0	0	1	0	0	
COIL	8161	broad.mit.edu	37	17	55038341	55038341	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:55038341C>A	uc002iuu.2	-	1	71	c.40G>T	c.(40-42)GAT>TAT	p.D14Y		NM_004645	NP_004636	P38432	COIL_HUMAN	coilin	14						Cajal body|nucleolus	protein C-terminus binding			ovary(1)	1	Breast(9;6.15e-08)					GGCGGGTAATCAAATTGAAGC	0.587											OREG0024594	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	47					1.08611e-07	1.14333e-07	1	1	0	
DYNLL2	140735	broad.mit.edu	37	17	56166549	56166549	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:56166549G>A	uc010wnn.1	+	3	453	c.179G>A	c.(178-180)CGA>CAA	p.R60Q		NM_080677	NP_542408	Q96FJ2	DYL2_HUMAN	dynein, light chain, LC8-type 2	60					activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals|microtubule-based process|transport	centrosome|cytosol|dynein complex|microtubule|myosin complex|plasma membrane	motor activity				0						ATCGTGGGCCGAAATTTTGGC	0.433													40	78					0	0	1	0	0	
OR4D1	26689	broad.mit.edu	37	17	56232801	56232801	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:56232801G>A	uc010wno.1	+	1	287	c.287G>A	c.(286-288)GGC>GAC	p.G96D	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCTACCAGGGCTGCATGGCC	0.522													53	86					0	0	1	0	0	
MSX2P1	55545	broad.mit.edu	37	17	56234898	56234898	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:56234898G>A	uc002ivn.2	+	1		c.579G>A				NR_002307				Homo sapiens msh homeobox 2 pseudogene 1 (MSX2P1), non-coding RNA.												0						CCAGCTCTCCGAACCTCACGG	0.537													8	16					0	0	1	0	0	
OR4D2	124538	broad.mit.edu	37	17	56247046	56247046	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:56247046A>C	uc010wnp.1	+	1	30	c.30A>C	c.(28-30)TCA>TCC	p.S10S		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CGTGGGTATCAGACTTTGTCT	0.468													52	121					0	0	1	0	0	
MPO	4353	broad.mit.edu	37	17	56348199	56348199	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:56348199A>G	uc002ivu.1	-	12	2233	c.2056T>C	c.(2056-2058)TTC>CTC	p.F686L		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	686					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	TGCATGCTGAACACACCCTCG	0.567													7	46					0	0	1	0	0	
MTMR4	9110	broad.mit.edu	37	17	56586131	56586131	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:56586131G>A	uc002iwj.2	-	6	475	c.365C>T	c.(364-366)GCC>GTC	p.A122V		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	122						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TTCAGGCTTGGCAGGTCTTGC	0.592													23	34					0	0	1	0	0	
SEPT4	5414	broad.mit.edu	37	17	56598158	56598158	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:56598158G>A	uc002iwm.1	-	11	1451	c.1323C>T	c.(1321-1323)GTC>GTT	p.V441V	MTMR4_uc002iwj.2_5'Flank|SEPT4_uc002iwk.1_Silent_p.V294V|SEPT4_uc010wnw.1_Silent_p.V294V|SEPT4_uc002iwl.1_Silent_p.V294V|SEPT4_uc002iwn.1_Silent_p.V342V|SEPT4_uc002iwo.1_Silent_p.V422V|SEPT4_uc002iwp.1_3'UTR|SEPT4_uc010wnx.1_Silent_p.V456V|SEPT4_uc010wny.1_Silent_p.V433V|SEPT4_uc010dcy.1_3'UTR	NM_004574	NP_004565	O43236	SEPT4_HUMAN	septin 4 isoform 1	441					apoptosis|cell cycle|cytokinesis|regulation of apoptosis	cytoskeleton|mitochondrion|nucleus	GTP binding|GTPase activity|protein binding|structural molecule activity				0	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCCCTGGTGGGACAGCAGGGA	0.527											OREG0024614	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	62	133					0	0	1	0	0	
C17orf47	284083	broad.mit.edu	37	17	56620179	56620179	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:56620179G>A	uc002iwq.1	-	1	1505	c.1369C>T	c.(1369-1371)CTT>TTT	p.L457F	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	457										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GACAATAAAAGATCTAGGGAA	0.478													61	162					0	0	1	0	0	
PPM1E	22843	broad.mit.edu	37	17	57043102	57043102	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:57043102G>A	uc002iwx.2	+	3	758	c.631G>A	c.(631-633)GAG>AAG	p.E211K	PPM1E_uc010ddd.2_Intron	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	220					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			CAAACTACACGAGATTTGCTG	0.458													125	193					0	0	1	0	0	
C17orf71	55181	broad.mit.edu	37	17	57288596	57288596	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:57288596A>G	uc002ixi.2	+	1	1226	c.1184A>G	c.(1183-1185)GAC>GGC	p.D395G		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	395					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					TTTCACATTGACAGCAGCAGT	0.512													37	68					0	0	1	0	0	
C17orf71	55181	broad.mit.edu	37	17	57288693	57288693	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:57288693C>T	uc002ixi.2	+	1	1323	c.1281C>T	c.(1279-1281)TTC>TTT	p.F427F		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	427					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					AGAAAGGTTTCGATGACAGTG	0.473													29	60					0	0	1	0	0	
GDPD1	284161	broad.mit.edu	37	17	57344492	57344492	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:57344492C>T	uc002ixk.1	+	7	804	c.667C>T	c.(667-669)CGA>TGA	p.R223*	GDPD1_uc002ixj.2_Nonsense_Mutation_p.R223*	NM_182569	NP_872375	Q8N9F7	GDPD1_HUMAN	glycerophosphodiester phosphodiesterase domain	223	GDPD.|Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					TGTGCCCATTCGAGAACAGTT	0.358													44	54					0	0	1	0	0	
CLTC	1213	broad.mit.edu	37	17	57760277	57760277	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:57760277G>A	uc002ixq.1	+	24	4218	c.3775G>A	c.(3775-3777)GCC>ACC	p.A1259T	CLTC_uc002ixp.2_Missense_Mutation_p.A1259T|CLTC_uc002ixr.1_Missense_Mutation_p.A1263T	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	1259	Heavy chain arm.|Proximal segment.|Involved in binding clathrin light chain (By similarity).				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GGTCTGCTTCGCCTGTGTAGA	0.343			T	ALK|TFE3	ALCL|renal 								33	63					0	0	1	0	0	
PTRH2	51651	broad.mit.edu	37	17	57775206	57775206	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:57775206G>A	uc002ixt.2	-	2	259	c.134C>T	c.(133-135)ACG>ATG	p.T45M	PTRH2_uc002ixs.2_RNA	NM_016077	NP_057161	Q9Y3E5	PTH2_HUMAN	Bcl-2 inhibitor of transcription precursor	45					apoptosis|translation	mitochondrion	aminoacyl-tRNA hydrolase activity				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					TGTCTTGCTCGTCTTGCTTTT	0.507													29	56					0	0	1	0	0	
TUBD1	51174	broad.mit.edu	37	17	57955475	57955475	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:57955475C>T	uc002ixw.1	-	5	1036	c.758G>A	c.(757-759)CGA>CAA	p.R253Q	TUBD1_uc010ddf.1_Missense_Mutation_p.R253Q|TUBD1_uc010ddg.1_Missense_Mutation_p.R218Q|TUBD1_uc010ddh.1_Missense_Mutation_p.R134Q|TUBD1_uc010wok.1_Missense_Mutation_p.R253Q|TUBD1_uc002ixx.1_Missense_Mutation_p.R253Q|TUBD1_uc010wol.1_Missense_Mutation_p.R37Q|TUBD1_uc010ddi.1_Intron	NM_016261	NP_057345	Q9UJT1	TBD_HUMAN	delta-tubulin	253					cell differentiation|microtubule-based movement|multicellular organismal development|protein polymerization|spermatogenesis	centriole|microtubule|nucleus	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1	all_cancers(5;3.18e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;9.34e-13)|all cancers(12;1.91e-11)			TAGTGGATTTCGTCTGTAGTG	0.408													24	46					0	0	1	0	0	
HEATR6	63897	broad.mit.edu	37	17	58143671	58143671	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:58143671G>T	uc002iyk.1	-	9	1332	c.1315C>A	c.(1315-1317)CTT>ATT	p.L439I	HEATR6_uc010ddk.1_5'UTR|HEATR6_uc010wos.1_Missense_Mutation_p.L271I	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	439							binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			TAGCCATAAAGAACTTTTTTT	0.388													24	41					1.10923e-09	1.19438e-09	1	1	0	
LOC653653	653653	broad.mit.edu	37	17	58179927	58179927	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:58179927C>A	uc010wot.1	-	1	354	c.238G>T	c.(238-240)GAA>TAA	p.E80*		NM_003916	NP_003907			adaptor-related protein complex 1 sigma 2												0						TGAACAAGTTCTCTTGTGATC	0.254													30	59					5.91797e-21	7.00173e-21	1	1	0	
USP32	84669	broad.mit.edu	37	17	58258686	58258686	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:58258686G>A	uc002iyo.1	-	32	4833	c.4547C>T	c.(4546-4548)TCG>TTG	p.S1516L	USP32_uc002iyn.1_Missense_Mutation_p.S1186L	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	1516					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			ACCACTTACCGAAATTGCATA	0.363													33	62					0	0	1	0	0	
USP32	84669	broad.mit.edu	37	17	58260766	58260766	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:58260766A>G	uc002iyo.1	-	31	4169	c.3883T>C	c.(3883-3885)TCA>CCA	p.S1295P	USP32_uc002iyn.1_Missense_Mutation_p.S965P	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	1295					protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			ATTTTCTGTGATTTTATCCAC	0.398													27	67					0	0	1	0	0	
USP32	84669	broad.mit.edu	37	17	58346875	58346875	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:58346875A>C	uc002iyo.1	-	7	1033	c.747T>G	c.(745-747)GAT>GAG	p.D249E	USP32_uc010wov.1_Missense_Mutation_p.D249E	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	249	EF-hand 2.|1 (Potential).				protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			TCTCCTTAAAATCTATGTGAT	0.363													21	40					0	0	1	0	0	
PPM1D	8493	broad.mit.edu	37	17	58740750	58740750	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:58740750G>A	uc002iyt.1	+	6	1877	c.1655G>A	c.(1654-1656)CGA>CAA	p.R552Q	PPM1D_uc010ddm.1_RNA	NM_003620	NP_003611	O15297	PPM1D_HUMAN	protein phosphatase 1D	552					negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			AAGCATAGACGAAATGGCTTA	0.468											OREG0031485	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	33	70					0	0	1	0	0	
TBX2	6909	broad.mit.edu	37	17	59479294	59479294	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:59479294C>T	uc010wox.1	+	2	926	c.645C>T	c.(643-645)ATC>ATT	p.I215I	TBX2_uc002ize.2_Silent_p.I205I|TBX2_uc002izg.2_Silent_p.I61I	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	215	T-box.				cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						CCAACAACATCTCTGACAAGC	0.612													23	42					0	0	1	0	0	
C17orf82	388407	broad.mit.edu	37	17	59489455	59489455	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:59489455T>C	uc002izh.1	+	1	344	c.119T>C	c.(118-120)GTC>GCC	p.V40A		NM_203425	NP_982249	Q86X59	CQ082_HUMAN	hypothetical protein LOC388407	40											0						TCCTTCGCTGTCCTTGGCCCC	0.697											OREG0024630	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	26					0	0	1	0	0	
BRIP1	83990	broad.mit.edu	37	17	59763410	59763410	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:59763410C>T	uc002izk.1	-	19	2833	c.2692G>A	c.(2692-2694)GAC>AAC	p.D898N	BRIP1_uc002izl.1_Missense_Mutation_p.D279N	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	898	Interaction with BRCA1.				DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						TTGGTTCTGTCCTTTATGGAT	0.398			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				58	121					0	0	1	0	0	
INTS2	57508	broad.mit.edu	37	17	59945352	59945352	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:59945352C>T	uc002izn.2	-	24	3363	c.3287G>A	c.(3286-3288)CGG>CAG	p.R1096Q	INTS2_uc002izm.2_Missense_Mutation_p.R1088Q	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	1096					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						AAAAGCATACCGCTTAGCCTG	0.338													11	27					0	0	1	0	0	
MED13	9969	broad.mit.edu	37	17	60038340	60038340	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:60038340G>T	uc002izo.2	-	23	5445	c.5368C>A	c.(5368-5370)CTT>ATT	p.L1790I		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1790					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						CCCACAAAAAGAACATTATAT	0.373													27	52					1.33986e-20	1.58318e-20	1	1	0	
MED13	9969	broad.mit.edu	37	17	60042387	60042387	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:60042387C>T	uc002izo.2	-	20	4901	c.4824G>A	c.(4822-4824)CCG>CCA	p.P1608P		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1608					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						CATCAGGATGCGGCTGAGTGG	0.363													14	37					0	0	1	0	0	
EFCAB3	146779	broad.mit.edu	37	17	60484019	60484019	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:60484019C>A	uc002izu.1	+	7	745	c.667C>A	c.(667-669)CTT>ATT	p.L223I	EFCAB3_uc010wpc.1_Missense_Mutation_p.L275I	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	223							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			ATTTAAATTTCTTGAAGAGCT	0.393													14	28					0.000308642	0.000314477	1	1	0	
MRC2	9902	broad.mit.edu	37	17	60741967	60741967	+	Silent	SNP	C	T	T	rs146205886		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:60741967C>T	uc002jad.2	+	2	579	c.177C>T	c.(175-177)GGC>GGT	p.G59G	MRC2_uc002jac.2_Silent_p.G59G	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	59	Extracellular (Potential).|Ricin B-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						AGGCCCAGGGCGGGCAGGTCA	0.617													34	83					0	0	1	0	0	
TANC2	26115	broad.mit.edu	37	17	61278268	61278268	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:61278268C>T	uc002jal.3	+	5	520	c.497C>T	c.(496-498)GCT>GTT	p.A166V	TANC2_uc010wpe.1_Missense_Mutation_p.A76V	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	166							binding			ovary(2)	2						AGCTATGGGGCTGTTACTAGT	0.458													45	103					0	0	1	0	0	
TANC2	26115	broad.mit.edu	37	17	61466084	61466084	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:61466084C>T	uc002jal.3	+	14	2581	c.2558C>T	c.(2557-2559)GCG>GTG	p.A853V	TANC2_uc010wpe.1_Missense_Mutation_p.A763V|TANC2_uc002jan.1_Missense_Mutation_p.A4V|TANC2_uc002jao.3_5'Flank|TANC2_uc002jam.1_Missense_Mutation_p.A220V	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	853	ANK 1.						binding			ovary(2)	2						ATGGCACTGGCGTCTTTACGA	0.333													6	8					0	0	1	0	0	
TACO1	51204	broad.mit.edu	37	17	61684818	61684818	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:61684818T>G	uc002jbd.2	+	4	887	c.687T>G	c.(685-687)GTT>GTG	p.V229V		NM_016360	NP_057444	Q9BSH4	TACO1_HUMAN	translational activator of mitochondrially	229					regulation of translation	mitochondrion					0						AAAGGAACGTTTTTAAAGTAA	0.488													18	56					0	0	1	0	0	
FTSJ3	117246	broad.mit.edu	37	17	61902505	61902505	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:61902505T>G	uc002jbz.2	-	7	692	c.614A>C	c.(613-615)AAG>ACG	p.K205T	FTSJ3_uc002jca.2_Missense_Mutation_p.K205T|PSMC5_uc002jcb.2_5'Flank|PSMC5_uc010ddy.2_5'Flank|PSMC5_uc010ddz.2_5'Flank|PSMC5_uc002jcc.2_5'Flank|PSMC5_uc002jcd.2_5'Flank	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	205					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						ACTGTCAACCTTGTCAGGGGC	0.428													25	54					0	0	1	0	0	
LRRC37A3	374819	broad.mit.edu	37	17	62892249	62892249	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:62892249G>T	uc002jey.2	-	3	1658	c.1127C>A	c.(1126-1128)TCT>TAT	p.S376Y	LRRC37A3_uc010wqg.1_Intron|LRRC37A3_uc010wqf.1_Intron	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	376	Extracellular (Potential).					integral to membrane					0						CTGGGTCGGAGAAGATTCGAC	0.517													95	333					3.19965e-69	3.99261e-69	1	1	0	
RGS9	8787	broad.mit.edu	37	17	63206625	63206625	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:63206625C>T	uc002jfe.2	+	17	1419	c.1309C>T	c.(1309-1311)CGG>TGG	p.R437W	RGS9_uc010dem.2_Missense_Mutation_p.R434W|RGS9_uc002jfd.2_Missense_Mutation_p.R434W|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Missense_Mutation_p.R208W	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	437					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						CCCTTTTATGCGGCGTCACCT	0.572													44	94					0	0	1	0	0	
CCDC46	201134	broad.mit.edu	37	17	63685267	63685267	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:63685267C>A	uc002jfl.2	-	24	2896	c.2677G>T	c.(2677-2679)GAA>TAA	p.E893*	CCDC46_uc010deo.2_Nonsense_Mutation_p.E564*|CCDC46_uc002jfm.2_Nonsense_Mutation_p.E893*|CCDC46_uc010dep.2_Nonsense_Mutation_p.E851*|CCDC46_uc002jfk.2_Nonsense_Mutation_p.E149*	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	893	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			GACTCCAATTCTTTGTGTTGT	0.323													27	40					6.38683e-12	7.03806e-12	1	1	0	
APOH	350	broad.mit.edu	37	17	64210746	64210746	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:64210746T>G	uc002jfn.3	-	7	866	c.807A>C	c.(805-807)AAA>AAC	p.K269N		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	269	Sushi-like.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			CAGTGGCTTTTTTCACAGGTA	0.353													49	74					0	0	1	0	0	
PRKCA	5578	broad.mit.edu	37	17	64641554	64641554	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:64641554G>A	uc002jfp.1	+	5	498	c.454G>A	c.(454-456)GGA>AGA	p.G152R	PRKCA_uc002jfo.1_Missense_Mutation_p.G23R	NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	152					activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	CAGCCTCTGCGGAATGGATCA	0.522													38	48					0	0	1	0	0	
CACNG5	27091	broad.mit.edu	37	17	64881136	64881136	+	Missense_Mutation	SNP	C	T	T	rs142426129	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:64881136C>T	uc010wqi.1	+	6	844	c.607C>T	c.(607-609)CGG>TGG	p.R203W	CACNG5_uc010wqj.1_Missense_Mutation_p.R203W	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	203				SAGVMSVYLFMKRYTAEDMYRPHPGFYRPRLSNCSDYSGQF LHPDAWVRGRSPSDISSEASLQMNSNYPALLKCPDYDQMSS SPC -> VKPVTLSMDRLGLGTAPLSRGEWGWGRRDIPQPF WTPDHPLYFPSSSQNVSLSYLSGSPPARMSPGPCSCPHVHF PPHSSCVLCRPQPREMRQAPAASPSSAVFSL (in Ref. 1; AAF03089).	regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			GTTTATGAAGCGGTACACCGC	0.612													21	60					0	0	1	0	0	
HELZ	9931	broad.mit.edu	37	17	65132142	65132142	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:65132142T>G	uc010wqk.1	-	23	3316	c.3129A>C	c.(3127-3129)CAA>CAC	p.Q1043H	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.Q1042H	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					CAACCAGGGATTGTGCTCTTG	0.398													22	27					0	0	1	0	0	
BPTF	2186	broad.mit.edu	37	17	65899998	65899998	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:65899998G>A	uc002jgf.2	+	8	2698	c.2637G>A	c.(2635-2637)GCG>GCA	p.A879A	BPTF_uc002jge.2_Silent_p.A1005A|BPTF_uc010wqm.1_Silent_p.A942A	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1005	Potential.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			TGCAGCAAGCGACATGGGTAA	0.249													21	46					0	0	1	0	0	
BPTF	2186	broad.mit.edu	37	17	65908574	65908574	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:65908574G>T	uc002jgf.2	+	11	4635	c.4574G>T	c.(4573-4575)AGC>ATC	p.S1525I	BPTF_uc002jge.2_Missense_Mutation_p.S1651I	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1651					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			TGTCCAGAAAGCAATTCAGTT	0.418													38	64					8.69298e-16	9.93761e-16	1	1	0	
KPNA2	3838	broad.mit.edu	37	17	66033597	66033597	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:66033597A>C	uc002jgk.2	+	3	331	c.199A>C	c.(199-201)AAC>CAC	p.N67H	KPNA2_uc002jgl.2_Missense_Mutation_p.N67H	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	67					DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			GCTGCAGGAAAACCGCAACAA	0.388													35	74					0	0	1	0	0	
KPNA2	3838	broad.mit.edu	37	17	66038403	66038403	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:66038403T>C	uc002jgk.2	+	5	637	c.505T>C	c.(505-507)TCT>CCT	p.S169P	KPNA2_uc002jgl.2_Missense_Mutation_p.S169P	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	169	NLS binding site (major) (By similarity).|ARM 3.				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			AGCATTCATTTCTCTGTTGGC	0.463													164	326					0	0	1	0	0	
LOC651250	651250	broad.mit.edu	37	17	66124160	66124160	+	RNA	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:66124160A>C	uc002jgq.2	+	6		c.3283A>C			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						CATTTGAAAAAAGCAGTTTAA	0.348													13	29					0	0	1	0	0	
AMZ2	51321	broad.mit.edu	37	17	66251928	66251928	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:66251928G>T	uc002jgs.1	+	7	955	c.838G>T	c.(838-840)GAA>TAA	p.E280*	AMZ2_uc002jgr.1_Nonsense_Mutation_p.E280*|AMZ2_uc002jgt.1_Nonsense_Mutation_p.E280*|AMZ2_uc002jgu.1_Nonsense_Mutation_p.E280*|AMZ2_uc002jgv.1_Nonsense_Mutation_p.E280*|AMZ2_uc002jgw.1_Nonsense_Mutation_p.E222*|AMZ2_uc002jgy.1_Nonsense_Mutation_p.E280*	NM_001033572	NP_001028744	Q86W34	AMZ2_HUMAN	archaemetzincins-2 isoform 1	280							metallopeptidase activity|zinc ion binding				0	all_cancers(12;1.12e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)			CCACTTGGAAGAAGCTGACCG	0.493													27	61					4.87955e-14	5.4818e-14	1	1	0	
SLC16A6	9120	broad.mit.edu	37	17	66267060	66267060	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:66267060C>T	uc002jgz.1	-	5	1429	c.1241G>A	c.(1240-1242)GGC>GAC	p.G414D	ARSG_uc002jhc.2_Intron|SLC16A6_uc002jha.1_Missense_Mutation_p.G414D	NM_004694	NP_004685	O15403	MOT7_HUMAN	solute carrier family 16, member 6	414	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity				0	all_cancers(12;1.24e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)		Pyruvic acid(DB00119)	CTTCTCAATGCCCACGACATC	0.458													26	86					0	0	1	0	0	
ABCA8	10351	broad.mit.edu	37	17	66913584	66913584	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:66913584C>A	uc002jhp.2	-	15	2115	c.1936G>T	c.(1936-1938)GTA>TTA	p.V646L	ABCA8_uc002jhq.2_Missense_Mutation_p.V686L|ABCA8_uc010wqq.1_Missense_Mutation_p.V686L|ABCA8_uc010wqr.1_Missense_Mutation_p.V625L|ABCA8_uc002jhr.2_Missense_Mutation_p.V686L	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	646	ABC transporter 1.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GAGAGAAATACTTTCCTGTCT	0.378													53	96					1.63038e-21	1.9351e-21	1	1	0	
ABCA8	10351	broad.mit.edu	37	17	66925729	66925729	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:66925729G>A	uc002jhp.2	-	7	1091	c.912C>T	c.(910-912)AGC>AGT	p.S304S	ABCA8_uc002jhq.2_Silent_p.S304S|ABCA8_uc010wqq.1_Silent_p.S304S|ABCA8_uc010wqr.1_Silent_p.S243S|ABCA8_uc002jhr.2_Silent_p.S304S	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	304	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GGAGAAAGAGGCTGAAGACTA	0.378													31	43					0	0	1	0	0	
ABCA9	10350	broad.mit.edu	37	17	67016572	67016572	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67016572G>A	uc002jhu.2	-	19	2700	c.2557C>T	c.(2557-2559)CGC>TGC	p.R853C	ABCA9_uc010dez.2_Missense_Mutation_p.R853C	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	853					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					TTTAGGAAGCGAACTTTTGCT	0.398													83	55					0	0	1	0	0	
ABCA6	23460	broad.mit.edu	37	17	67083602	67083602	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67083602T>G	uc002jhw.1	-	29	3886	c.3711A>C	c.(3709-3711)CAA>CAC	p.Q1237H		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1237					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CATCTCTACTTTGGGGGGAAA	0.368													27	208					0	0	1	0	0	
ABCA6	23460	broad.mit.edu	37	17	67084326	67084326	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67084326C>T	uc002jhw.1	-	28	3855	c.3680G>A	c.(3679-3681)CGA>CAA	p.R1227Q		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1227					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					AGGATCTTTTCGCATTCTTTT	0.318													8	36					0	0	1	0	0	
ABCA6	23460	broad.mit.edu	37	17	67101676	67101676	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67101676G>A	uc002jhw.1	-	20	2842	c.2667C>T	c.(2665-2667)AAC>AAT	p.N889N	ABCA6_uc002jhx.1_3'UTR	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	889					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					AATACAATTCGTTTTTAAATT	0.328													14	29					0	0	1	0	0	
ABCA6	23460	broad.mit.edu	37	17	67103843	67103843	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67103843C>T	uc002jhw.1	-	18	2558	c.2383G>A	c.(2383-2385)GAA>AAA	p.E795K	ABCA6_uc002jhx.1_Missense_Mutation_p.E248K	NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	795					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					TTACCTTGTTCGATAGTTGAC	0.353													23	41					0	0	1	0	0	
ABCA6	23460	broad.mit.edu	37	17	67119483	67119483	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67119483T>G	uc002jhw.1	-	10	1508	c.1333A>C	c.(1333-1335)AGG>CGG	p.R445R		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	445					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GCATTAGTCCTTTGGTGTTGG	0.368													10	28					0	0	1	0	0	
ABCA6	23460	broad.mit.edu	37	17	67130778	67130778	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67130778A>G	uc002jhw.1	-	5	739	c.564_splice	c.e5+1	p.E188_splice		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6						transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					TCAAGCACTTACTTCTATAAT	0.303													30	40					0	0	1	0	0	
ABCA10	10349	broad.mit.edu	37	17	67187325	67187325	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67187325T>G	uc010dfa.1	-	18	2882	c.2003A>C	c.(2002-2004)AAA>ACA	p.K668T	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_Missense_Mutation_p.K269T	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	668					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					ACCTGGAAATTTGTTCGTTTT	0.343													7	26					0	0	1	0	0	
ABCA5	23461	broad.mit.edu	37	17	67246653	67246653	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67246653C>A	uc002jif.2	-	35	5863	c.4645G>T	c.(4645-4647)GAA>TAA	p.E1549*	ABCA5_uc002jib.2_Nonsense_Mutation_p.E515*|ABCA5_uc002jic.2_Nonsense_Mutation_p.E772*|ABCA5_uc002jid.2_Nonsense_Mutation_p.E466*|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Nonsense_Mutation_p.E1549*	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	1549					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					TACTGAATTTCTCTTTGAAGG	0.308													15	32					4.14922e-12	4.57968e-12	1	1	0	
ABCA5	23461	broad.mit.edu	37	17	67305533	67305533	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:67305533T>G	uc002jif.2	-	3	1557	c.339A>C	c.(337-339)AAA>AAC	p.K113N	ABCA5_uc002jig.2_Missense_Mutation_p.K113N|ABCA5_uc002jih.2_Missense_Mutation_p.K113N|ABCA5_uc010dfe.2_Missense_Mutation_p.K113N	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	113					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					TTAACATTTCTTTTTCATTTG	0.318													31	56					0	0	1	0	0	
COG1	9382	broad.mit.edu	37	17	71197534	71197534	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:71197534C>A	uc002jjg.2	+	7	1604	c.1568C>A	c.(1567-1569)TCT>TAT	p.S523Y	COG1_uc002jjh.2_Missense_Mutation_p.S523Y|COG1_uc002jjf.1_Missense_Mutation_p.S523Y	NM_018714	NP_061184	Q8WTW3	COG1_HUMAN	component of oligomeric golgi complex 1	523					Golgi organization|intra-Golgi vesicle-mediated transport|protein transport	Golgi membrane|Golgi transport complex	protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			GCCCTGGATTCTAAGCTGAAG	0.537													52	123					3.76525e-18	4.39261e-18	1	1	0	
C17orf80	55028	broad.mit.edu	37	17	71232871	71232871	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:71232871C>T	uc002jjm.3	+	3	1444	c.1250C>T	c.(1249-1251)TCT>TTT	p.S417F	C17orf80_uc010wqu.1_Missense_Mutation_p.S417F|C17orf80_uc010dfj.2_Missense_Mutation_p.S417F|C17orf80_uc002jjk.1_Missense_Mutation_p.S417F|C17orf80_uc002jjl.3_Missense_Mutation_p.S417F	NM_017941	NP_060411	Q9BSJ5	CQ080_HUMAN	lung cancer-related protein 8 isoform a	417	Extracellular (Potential).					integral to membrane				skin(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			GAGCCCAAATCTGATAGTCAG	0.498													30	48					0	0	1	0	0	
GPRC5C	55890	broad.mit.edu	37	17	72436249	72436249	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:72436249G>A	uc002jks.2	+	1	373	c.334G>A	c.(334-336)GAC>AAC	p.D112N	GPRC5C_uc002jkp.2_Missense_Mutation_p.D157N|GPRC5C_uc002jkq.2_Intron|GPRC5C_uc002jkr.2_Missense_Mutation_p.D124N|GPRC5C_uc002jkt.2_Missense_Mutation_p.D112N|GPRC5C_uc002jku.2_5'Flank	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	112	Extracellular (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						GGTGAAGCCCGACTTCTCCAC	0.597													52	79					0	0	1	0	0	
CD300LB	124599	broad.mit.edu	37	17	72521955	72521955	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:72521955A>G	uc002jkx.2	-	2	426	c.413T>C	c.(412-414)GTT>GCT	p.V138A	CD300LB_uc010wqz.1_Missense_Mutation_p.V138A	NM_174892	NP_777552	A8K4G0	CLM7_HUMAN	CD300 molecule-like family member b	101	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)	1						ACACCAGTAAACATCTGCGTC	0.512													60	127					0	0	1	0	0	
C17orf77	146723	broad.mit.edu	37	17	72588512	72588512	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:72588512G>A	uc002jla.1	+	3	689	c.327G>A	c.(325-327)AAG>AAA	p.K109K	CD300LD_uc002jkz.2_5'Flank	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	109						extracellular region					0						TAGGAGAAAAGAGGTGTCATT	0.428													46	88					0	0	1	0	0	
RAB37	326624	broad.mit.edu	37	17	72737009	72737009	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:72737009G>T	uc002jlk.2	+	2	252	c.196G>T	c.(196-198)GAC>TAC	p.D66Y	RAB37_uc002jlc.2_Intron|RAB37_uc010dfu.2_Intron|RAB37_uc002jld.2_Intron|RAB37_uc010wrb.1_Missense_Mutation_p.D34Y|RAB37_uc010wrc.1_Missense_Mutation_p.D71Y|RAB37_uc010wrd.1_Intron|RAB37_uc010wre.1_Intron|RAB37_uc002jll.3_RNA	NM_001006638	NP_001006639	Q96AX2	RAB37_HUMAN	RAB37, member RAS oncogene family isoform 2	66	Effector region (By similarity).				protein transport|small GTPase mediated signal transduction	ER-Golgi intermediate compartment	GTP binding			ovary(1)	1						CGTCGGCATAGACTTCAGGGT	0.602													36	70					1.21669e-08	1.29713e-08	1	1	0	
OTOP3	347741	broad.mit.edu	37	17	72939782	72939782	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:72939782C>T	uc010wrr.1	+	5	768	c.768C>T	c.(766-768)ATC>ATT	p.I256I	OTOP3_uc010wrq.1_Silent_p.I238I	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	256						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					ACCGAGAGATCGAAGCTGAGC	0.473													20	35					0	0	1	0	0	
C17orf28	283987	broad.mit.edu	37	17	72947703	72947703	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:72947703C>T	uc002jmj.3	-	19	2478	c.2329G>A	c.(2329-2331)GAC>AAC	p.D777N	C17orf28_uc002jmi.2_Missense_Mutation_p.D179N|C17orf28_uc010wrs.1_Missense_Mutation_p.D576N	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	777						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					ACGTCGGTGTCGTACCAGACA	0.622													7	10					0	0	1	0	0	
ACOX1	51	broad.mit.edu	37	17	73944437	73944437	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:73944437A>G	uc002jqf.2	-	13	2120	c.1830T>C	c.(1828-1830)TTT>TTC	p.F610F	ACOX1_uc010wsq.1_Silent_p.F572F|ACOX1_uc002jqe.2_Silent_p.F610F|ACOX1_uc010wsr.1_Silent_p.F542F	NM_007292	NP_009223	Q15067	ACOX1_HUMAN	acyl-Coenzyme A oxidase 1 isoform b	610					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|prostaglandin metabolic process|very long-chain fatty acid metabolic process	peroxisomal matrix	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity|flavin adenine dinucleotide binding|protein N-terminus binding			ovary(1)	1						CCTGAAAATCAAATGCATCAA	0.453													42	87					0	0	1	0	0	
ACOX1	51	broad.mit.edu	37	17	73951988	73951988	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:73951988G>A	uc002jqf.2	-	5	869	c.579C>T	c.(577-579)CTC>CTT	p.L193L	ACOX1_uc010wsq.1_Silent_p.L155L|ACOX1_uc002jqe.2_Silent_p.L193L|ACOX1_uc010wsr.1_Silent_p.L125L	NM_007292	NP_009223	Q15067	ACOX1_HUMAN	acyl-Coenzyme A oxidase 1 isoform b	193					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|prostaglandin metabolic process|very long-chain fatty acid metabolic process	peroxisomal matrix	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity|flavin adenine dinucleotide binding|protein N-terminus binding			ovary(1)	1						CCTTAGTGATGAGCTGGGCAA	0.418													73	136					0	0	1	0	0	
EXOC7	23265	broad.mit.edu	37	17	74090528	74090528	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:74090528C>A	uc002jqs.2	-	6	870	c.775G>T	c.(775-777)GAC>TAC	p.D259Y	EXOC7_uc010dgv.1_Missense_Mutation_p.D206Y|EXOC7_uc002jqq.2_Missense_Mutation_p.D259Y|EXOC7_uc010wsw.1_Missense_Mutation_p.D259Y|EXOC7_uc010wsx.1_Missense_Mutation_p.D259Y|EXOC7_uc002jqr.2_Missense_Mutation_p.D259Y|EXOC7_uc010wsv.1_Missense_Mutation_p.D218Y|EXOC7_uc002jqu.2_Missense_Mutation_p.D259Y	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	259					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			GTAGGTGTGTCTTTCCTCTTG	0.562													32	67					2.20262e-25	2.65585e-25	1	1	0	
MFSD11	79157	broad.mit.edu	37	17	74772498	74772498	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:74772498G>A	uc002jta.2	+	13	2033	c.1060G>A	c.(1060-1062)GCC>ACC	p.A354T	MFSD11_uc002jtb.2_Missense_Mutation_p.A354T|MFSD11_uc010dha.2_Missense_Mutation_p.A302T|MFSD11_uc002jtc.2_Missense_Mutation_p.A354T|MFSD11_uc002jtd.3_Missense_Mutation_p.A354T|MFSD11_uc010dhb.2_Missense_Mutation_p.A302T|MFSD11_uc002jte.2_Missense_Mutation_p.A354T	NM_024311	NP_077287	O43934	MFS11_HUMAN	major facilitator superfamily domain containing	354						integral to membrane				ovary(1)	1						CAAAGAAGTTGCCATTCTCTG	0.413													44	94					0	0	1	0	0	
DNAH17	8632	broad.mit.edu	37	17	76548826	76548826	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:76548826T>C	uc002jvv.1	-	11	1452	c.1346A>G	c.(1345-1347)GAT>GGT	p.D449G						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TAACTTGACATCAATTGCTTC	0.428													67	152					0	0	1	0	0	
DNAH17	8632	broad.mit.edu	37	17	76554208	76554208	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:76554208G>A	uc002jvv.1	-	10	1372	c.1266C>T	c.(1264-1266)ATC>ATT	p.I422I						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			ACCAGCCAACGATGAGCTCCA	0.433													7	16					0	0	1	0	0	
USP36	57602	broad.mit.edu	37	17	76832327	76832327	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:76832327A>G	uc002jvz.1	-	3	444	c.119T>C	c.(118-120)ATC>ACC	p.I40T	USP36_uc002jwa.1_Missense_Mutation_p.I40T|USP36_uc002jwd.1_Missense_Mutation_p.I40T	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	40					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			CTCGAACTCGATTTTCTGTAA	0.537													11	38					0	0	1	0	0	
TBC1D16	125058	broad.mit.edu	37	17	77922709	77922709	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:77922709G>T	uc002jxj.2	-	8	1619	c.1503C>A	c.(1501-1503)TTC>TTA	p.F501L	TBC1D16_uc002jxh.2_Missense_Mutation_p.F139L|TBC1D16_uc002jxi.2_Missense_Mutation_p.F126L|TBC1D16_uc002jxk.1_Missense_Mutation_p.F139L	NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	501	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			CCCCCCGGAAGAACTGGTTGT	0.572													45	75					1.23103e-26	1.49092e-26	1	1	0	
CARD14	79092	broad.mit.edu	37	17	78162210	78162210	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:78162210A>G	uc002jxw.1	+	5	905	c.710A>G	c.(709-711)AAC>AGC	p.N237S	CARD14_uc002jxt.1_RNA|CARD14_uc002jxv.2_Missense_Mutation_p.N237S|CARD14_uc010wud.1_RNA|CARD14_uc002jxx.2_5'UTR|CARD14_uc010dhu.1_Missense_Mutation_p.N35S	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1	237	Potential.				activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CAGCGAGCCAACATGGTTTCC	0.607													10	26					0	0	1	0	0	
RNF213	57674	broad.mit.edu	37	17	78321073	78321073	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:78321073G>T	uc002jyh.1	+	4	3380	c.3157G>T	c.(3157-3159)GCA>TCA	p.A1053S		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GCAAGACATTGCACAGGCTGT	0.498													9	29					2.80697e-09	3.01096e-09	1	1	0	
RNF213	57674	broad.mit.edu	37	17	78354771	78354771	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:78354771C>T	uc002jyh.1	+	31	8223	c.8000C>T	c.(7999-8001)GCG>GTG	p.A2667V	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.A1049V	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			CTTCTGGGAGCGTCCCAGAGT	0.562													96	198					0	0	1	0	0	
RNF213	57674	broad.mit.edu	37	17	78360622	78360622	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:78360622C>T	uc002jyh.1	+	38	9295	c.9072C>T	c.(9070-9072)TTC>TTT	p.F3024F	uc002jyi.1_Intron|RNF213_uc010dhx.1_5'UTR	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TGCAGGAGTTCGATCTGGAGA	0.582													10	26					0	0	1	0	0	
RPTOR	57521	broad.mit.edu	37	17	78796935	78796935	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:78796935T>G	uc002jyt.1	+	9	1853	c.1048T>G	c.(1048-1050)TTT>GTT	p.F350V	RPTOR_uc002jys.2_Missense_Mutation_p.F350V|RPTOR_uc010wuf.1_Missense_Mutation_p.F165V|RPTOR_uc010wug.1_Missense_Mutation_p.F350V	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	350					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						GTTTCGAAATTTTTTATTGGC	0.483													10	125					0	0	1	0	0	
AATK	9625	broad.mit.edu	37	17	79095489	79095489	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:79095489G>A	uc010dia.2	-	11	2327	c.2247C>T	c.(2245-2247)TGC>TGT	p.C749C	AATK_uc010dhz.2_RNA	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	749	Pro-rich.					integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			CCTGGGCAGAGCATAGATGAG	0.692													4	8					0	0	1	0	0	
AATK	9625	broad.mit.edu	37	17	79096523	79096523	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:79096523C>T	uc010dia.2	-	11	1293	c.1213G>A	c.(1213-1215)GAA>AAA	p.E405K	AATK_uc010dhz.2_5'Flank	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	405						integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			TCCTCTGCTTCGGTGGCGCCC	0.498													3	6					0	0	1	0	0	
TSPAN10	83882	broad.mit.edu	37	17	79615131	79615131	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:79615131C>T	uc010die.2	+	4	965	c.875C>T	c.(874-876)GCT>GTT	p.A292V	TSPAN10_uc010did.1_RNA	NM_031945	NP_114151	Q9H1Z9	TSN10_HUMAN	tetraspanin 10	292	Helical; (Potential).					integral to membrane				ovary(1)	1	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GCGAACCTGGCTGCCTCGGGC	0.761													4	4					0	0	1	0	0	
C17orf90	339229	broad.mit.edu	37	17	79632445	79632445	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:79632445T>G	uc002kba.2	-	2	241	c.230A>C	c.(229-231)AAG>ACG	p.K77T	C17orf90_uc002kbb.2_3'UTR|CCDC137_uc002kbc.3_5'Flank|CCDC137_uc002kbd.2_5'Flank	NM_001039842	NP_001034931	Q5BKU9	CQ090_HUMAN	hypothetical protein LOC339229	77											0	all_neural(118;0.0878)|all_lung(278;0.23)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			CAGCGATGCCTTGGGCGGCCT	0.662													22	45					0	0	1	0	0	
SIRT7	51547	broad.mit.edu	37	17	79873485	79873485	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:79873485A>G	uc002kcj.1	-	4	440	c.407_splice	c.e4+1	p.S136_splice	SIRT7_uc002kck.1_Splice_Site|SIRT7_uc002kcl.1_Splice_Site_p.S54_splice	NM_016538	NP_057622	Q9NRC8	SIRT7_HUMAN	sirtuin 7						chromatin silencing|positive regulation of transcription on exit from mitosis|protein deacetylation|rRNA transcription	cytoplasm|nucleolus organizer region	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ binding|protein binding|zinc ion binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0165)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			TGGCCCGCTTACCTAACGCTT	0.592													12	21					0	0	1	0	0	
NOTUM	147111	broad.mit.edu	37	17	79911050	79911050	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:79911050C>A	uc010wvg.1	-	11	1550	c.1278G>T	c.(1276-1278)AAG>AAT	p.K426N		NM_178493	NP_848588	Q6P988	NOTUM_HUMAN	notum pectinacetylesterase homolog precursor	426						extracellular region	hydrolase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			TGAGGGGGGTCTTGCTGGCCT	0.672													9	26					3.09899e-07	3.24682e-07	1	1	0	
NARF	26502	broad.mit.edu	37	17	80443437	80443437	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:80443437G>A	uc002kfg.3	+	10	1176	c.1036G>A	c.(1036-1038)GCC>ACC	p.A346T	NARF_uc002kff.3_Missense_Mutation_p.A287T|NARF_uc010dit.2_Missense_Mutation_p.A392T|NARF_uc002kfj.3_Missense_Mutation_p.A298T|NARF_uc002kfi.3_RNA|NARF_uc002kfh.3_Missense_Mutation_p.A392T|NARF_uc002kfk.2_RNA	NM_012336	NP_036468	Q9UHQ1	NARF_HUMAN	nuclear prelamin A recognition factor isoform a	346						lamin filament	lamin binding			skin(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			CTTTGCTGCAGCCTATGGCTT	0.478													52	88					0	0	1	0	0	
ZNF750	79755	broad.mit.edu	37	17	80790171	80790171	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:80790171T>C	uc002kga.2	-	2	471	c.160A>G	c.(160-162)ACT>GCT	p.T54A	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	54						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GATACTAAAGTAATCGAGTTT	0.433													35	70					0	0	1	0	0	
COLEC12	81035	broad.mit.edu	37	18	346509	346509	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:346509G>A	uc002kkm.2	-	5	1328	c.1113C>T	c.(1111-1113)TGC>TGT	p.C371C		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	371	Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				GGGTATCTGTGCAAGTGGTCC	0.448													25	54					0	0	1	0	0	
COLEC12	81035	broad.mit.edu	37	18	347104	347104	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:347104G>A	uc002kkm.2	-	5	733	c.518C>T	c.(517-519)GCG>GTG	p.A173V		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	173	Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				GCCATTATACGCCTGGAGGGT	0.473													51	92					0	0	1	0	0	
COLEC12	81035	broad.mit.edu	37	18	348100	348100	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:348100T>G	uc002kkm.2	-	4	460	c.245A>C	c.(244-246)AAG>ACG	p.K82T		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	82	Potential.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				TGCTGTGAGCTTGTCATCATA	0.388													15	46					0	0	1	0	0	
ENOSF1	55556	broad.mit.edu	37	18	674310	674310	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:674310T>G	uc002kku.3	-	16	1402	c.1327A>C	c.(1327-1329)AAT>CAT	p.N443H	ENOSF1_uc002kkt.3_Missense_Mutation_p.N361H|ENOSF1_uc010dke.2_RNA|ENOSF1_uc010dkf.2_Missense_Mutation_p.N450H|ENOSF1_uc002kkv.3_Missense_Mutation_p.N430H|ENOSF1_uc002kkw.3_Missense_Mutation_p.N262H|ENOSF1_uc002kkx.3_Missense_Mutation_p.N367H	NM_017512	NP_059982	Q7L5Y1	ENOF1_HUMAN	enolase superfamily 1 isoform rTS beta	443					cellular amino acid catabolic process	mitochondrion	isomerase activity|metal ion binding			ovary(1)	1						AGCACTTAATTTTCTTGAGCA	0.373													104	208					0	0	1	0	0	
ADCYAP1	116	broad.mit.edu	37	18	909593	909593	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:909593A>C	uc010dkg.2	+	5	607	c.488A>C	c.(487-489)AAA>ACA	p.K163T	ADCYAP1_uc010dkh.2_Missense_Mutation_p.K163T	NM_001099733	NP_001093203	P18509	PACA_HUMAN	adenylate cyclase activating polypeptide	163					activation of adenylate cyclase activity|cell-cell signaling|female pregnancy|nerve growth factor receptor signaling pathway|regulation of G-protein coupled receptor protein signaling pathway	extracellular region|soluble fraction	neuropeptide hormone activity|peptide hormone receptor binding				0						AAGAGGTATAAACAAAGGGTT	0.493													75	169					0	0	1	0	0	
NDC80	10403	broad.mit.edu	37	18	2577854	2577854	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:2577854C>T	uc002kli.2	+	4	471	c.289C>T	c.(289-291)CGA>TGA	p.R97*		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2	97	Interaction with the N-terminus of CDCA1.|Nuclear localization.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						GCAGTGTATTCGACAACTCTG	0.363													41	73					0	0	1	0	0	
NDC80	10403	broad.mit.edu	37	18	2577969	2577969	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:2577969T>G	uc002kli.2	+	5	487	c.305T>G	c.(304-306)TTT>TGT	p.F102C		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2	102	Interaction with the N-terminus of CDCA1.|Nuclear localization.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						TTATTGTAGTTTCTTACAGAA	0.318													33	77					0	0	1	0	0	
SMCHD1	23347	broad.mit.edu	37	18	2667021	2667021	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:2667021A>C	uc002klm.3	+	3	604	c.415A>C	c.(415-417)AAT>CAT	p.N139H		NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	139					chromosome organization		ATP binding				0						TGAAGGACAAAATCCTTTGCG	0.358													9	8					0	0	1	0	0	
SMCHD1	23347	broad.mit.edu	37	18	2771569	2771569	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:2771569C>T	uc002klm.3	+	40	5194	c.5005C>T	c.(5005-5007)CGA>TGA	p.R1669*	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1669					chromosome organization		ATP binding				0						GGCCCAATTGCGAAATGAACT	0.303													25	51					0	0	1	0	0	
EMILIN2	84034	broad.mit.edu	37	18	2891625	2891625	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:2891625T>C	uc002kln.2	+	4	1659	c.1500T>C	c.(1498-1500)CGT>CGC	p.R500R		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	500					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		TGGAAGACCGTCTGGGGAGCG	0.532													39	79					0	0	1	0	0	
EPB41L3	23136	broad.mit.edu	37	18	5415967	5415967	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:5415967G>T	uc002kmt.1	-	13	2003	c.1917C>A	c.(1915-1917)ATC>ATA	p.I639I	EPB41L3_uc010wzh.1_Intron|EPB41L3_uc002kmu.1_Intron|EPB41L3_uc010dkq.1_Intron|EPB41L3_uc002kms.1_Intron|EPB41L3_uc010wze.1_Intron|EPB41L3_uc010wzf.1_Intron|EPB41L3_uc010wzg.1_Intron|EPB41L3_uc010dkr.2_Intron	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	639	Spectrin--actin-binding (Potential).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						GAAAGAAAAAGATGAAGAGGA	0.562													24	62					1.22574e-08	1.30575e-08	1	1	0	
TMEM200C	645369	broad.mit.edu	37	18	5890224	5890224	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:5890224T>G	uc002kmx.1	-	1	1880	c.1839A>C	c.(1837-1839)GAA>GAC	p.E613D		NM_001080209	NP_001073678	A6NKL6	T200C_HUMAN	transmembrane protein 200C	613						integral to membrane					0						CCAGTTCTTCTTCTACCCCTA	0.507													42	65					0	0	1	0	0	
ARHGAP28	79822	broad.mit.edu	37	18	6889954	6889954	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:6889954T>G	uc010wzi.1	+	12	1311	c.1073T>G	c.(1072-1074)ATT>AGT	p.I358S	ARHGAP28_uc002knc.2_Missense_Mutation_p.I483S|ARHGAP28_uc002knd.2_Missense_Mutation_p.I376S|ARHGAP28_uc002kne.2_Missense_Mutation_p.I376S|ARHGAP28_uc002knf.2_Missense_Mutation_p.I367S			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	358					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				CTGTGGAACATTTCTACAGTG	0.398													14	146					0	0	1	0	0	
LAMA1	284217	broad.mit.edu	37	18	6943388	6943388	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:6943388A>G	uc002knm.2	-	62	8952	c.8858T>C	c.(8857-8859)GTC>GCC	p.V2953A	LAMA1_uc002knk.2_Missense_Mutation_p.V283A|LAMA1_uc002knl.2_Missense_Mutation_p.V406A|LAMA1_uc010wzj.1_Missense_Mutation_p.V2429A	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2953	Laminin G-like 5.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACCATTGTTGACATGGAACAA	0.408													40	60					0	0	1	0	0	
LAMA1	284217	broad.mit.edu	37	18	6956679	6956679	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:6956679C>T	uc002knm.2	-	56	8144	c.8050G>A	c.(8050-8052)GAT>AAT	p.D2684N	LAMA1_uc002knk.2_5'Flank|LAMA1_uc002knl.2_Missense_Mutation_p.D137N|LAMA1_uc010wzj.1_Missense_Mutation_p.D2160N	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2684					axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCTCTGCATCGGGAGCCAGC	0.547													29	59					0	0	1	0	0	
LAMA1	284217	broad.mit.edu	37	18	6959410	6959410	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:6959410G>T	uc002knm.2	-	54	7802	c.7708C>A	c.(7708-7710)CTC>ATC	p.L2570I	LAMA1_uc002knk.2_5'Flank|LAMA1_uc002knl.2_Missense_Mutation_p.L23I|LAMA1_uc010wzj.1_Missense_Mutation_p.L2046I	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2570	Laminin G-like 3.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCGTGCAGGAGAGCTTTTCTC	0.557													43	80					4.01765e-15	4.56549e-15	1	1	0	
LAMA1	284217	broad.mit.edu	37	18	6986331	6986331	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:6986331T>C	uc002knm.2	-	37	5278	c.5184A>G	c.(5182-5184)TTA>TTG	p.L1728L	LAMA1_uc010wzj.1_Silent_p.L1204L	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1728	Domain II and I.|Potential.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTTGTGACAATAAATCTTCAG	0.358													21	63					0	0	1	0	0	
PTPRM	5797	broad.mit.edu	37	18	7888319	7888319	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:7888319C>T	uc002knn.3	+	3	915	c.412C>T	c.(412-414)CGT>TGT	p.R138C	PTPRM_uc010dkv.2_Missense_Mutation_p.R138C	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	138	MAM.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				AGACCCAACACGTACATGGAA	0.428													30	69					0	0	1	0	0	
PTPRM	5797	broad.mit.edu	37	18	8085834	8085834	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:8085834C>T	uc002knn.3	+	10	2220	c.1717C>T	c.(1717-1719)CCT>TCT	p.P573S	PTPRM_uc010dkv.2_Missense_Mutation_p.P573S|PTPRM_uc010wzl.1_Missense_Mutation_p.P360S	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	573	Fibronectin type-III 3.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				GGGTTTTGGGCCTCCAGCAAC	0.428													31	70					0	0	1	0	0	
PTPRM	5797	broad.mit.edu	37	18	8113723	8113723	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:8113723G>T	uc002knn.3	+	12	2599	c.2096G>T	c.(2095-2097)AGA>ATA	p.R699I	PTPRM_uc010dkv.2_Missense_Mutation_p.R699I|PTPRM_uc010wzl.1_Missense_Mutation_p.R486I	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	699	Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				AAAAGCTACAGAATTTATTTC	0.403													57	140					1.78197e-24	2.14076e-24	1	1	0	
PTPRM	5797	broad.mit.edu	37	18	8387085	8387085	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:8387085C>T	uc002knn.3	+	29	4524	c.4021C>T	c.(4021-4023)CGG>TGG	p.R1341W	PTPRM_uc010dkv.2_Missense_Mutation_p.R1354W|PTPRM_uc010wzl.1_Missense_Mutation_p.R1128W	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	1341	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				AGATGGATATCGGATGGTGCA	0.502													23	79					0	0	1	0	0	
RAB12	201475	broad.mit.edu	37	18	8638257	8638257	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:8638257T>C	uc002knp.2	+	6	1015	c.732T>C	c.(730-732)TGT>TGC	p.C244C		NM_001025300	NP_001020471	Q6IQ22	RAB12_HUMAN	RAB12, member RAS oncogene family	244					protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding				0						TCCGATGCTGTTGATTTCCTA	0.418													11	27					0	0	1	0	0	
ANKRD12	23253	broad.mit.edu	37	18	9255701	9255701	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:9255701A>C	uc002knv.2	+	9	2693	c.2436A>C	c.(2434-2436)GAA>GAC	p.E812D	ANKRD12_uc002knw.2_Missense_Mutation_p.E789D|ANKRD12_uc002knx.2_Missense_Mutation_p.E789D|ANKRD12_uc010dkx.1_Missense_Mutation_p.E519D	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	812						nucleus				ovary(2)|central_nervous_system(1)	3						AAAAACAAGAAAAGCATATAA	0.323													28	45					0	0	1	0	0	
APCDD1	147495	broad.mit.edu	37	18	10488027	10488027	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:10488027C>T	uc002kom.3	+	5	1891	c.1537C>T	c.(1537-1539)CGC>TGC	p.R513C		NM_153000	NP_694545	Q8J025	APCD1_HUMAN	adenomatosis polyposis coli down-regulated 1	513	Cytoplasmic (Potential).				hair follicle development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to plasma membrane	Wnt-protein binding				0				READ - Rectum adenocarcinoma(15;0.08)		TTGGAACATCCGCAGATAGAA	0.478													31	39					0	0	1	0	0	
FAM38B	63895	broad.mit.edu	37	18	10671566	10671566	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:10671566T>C	uc002kor.3	-	14	2228	c.2088A>G	c.(2086-2088)TCA>TCG	p.S696S	FAM38B_uc002koq.2_Silent_p.S531S	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2739						integral to membrane	ion channel activity			ovary(1)	1						TTGTCTCTGGTGAGCGATATA	0.323													19	38					0	0	1	0	0	
SPIRE1	56907	broad.mit.edu	37	18	12479831	12479831	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:12479831G>T	uc002kre.2	-	10	1318	c.1271C>A	c.(1270-1272)TCA>TAA	p.S424*	SPIRE1_uc002krc.2_RNA|SPIRE1_uc010wzw.1_Nonsense_Mutation_p.S290*|SPIRE1_uc010wzx.1_Nonsense_Mutation_p.S213*|SPIRE1_uc010wzy.1_Nonsense_Mutation_p.S410*	NM_001128626	NP_001122098	Q08AE8	SPIR1_HUMAN	spire homolog 1 isoform a	424						cytoskeleton|perinuclear region of cytoplasm	actin binding				0						CACCATAGATGACTCCACAAG	0.448													27	70					1.62565e-12	1.80183e-12	1	1	0	
PTPN2	5771	broad.mit.edu	37	18	12817275	12817275	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:12817275G>T	uc002krp.2	-	6	779	c.585C>A	c.(583-585)TTC>TTA	p.F195L	PTPN2_uc002krl.2_Missense_Mutation_p.F195L|PTPN2_uc002krn.2_Missense_Mutation_p.F218L|PTPN2_uc002kro.2_Missense_Mutation_p.F195L|PTPN2_uc002krm.2_Missense_Mutation_p.F195L	NM_002828	NP_002819	P17706	PTN2_HUMAN	protein tyrosine phosphatase, non-receptor type	195	Tyrosine-protein phosphatase.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway	endoplasmic reticulum|nucleoplasm	protein binding			skin(2)	2		Lung NSC(161;8.94e-06)				CTTTAAACAAGAAATTGAGAA	0.468													47	73					4.18559e-23	5.00925e-23	1	1	0	
CEP192	55125	broad.mit.edu	37	18	13069153	13069153	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:13069153G>A	uc010xac.1	+	26	5108	c.5028G>A	c.(5026-5028)GGG>GGA	p.G1676G	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Silent_p.G1201G|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Silent_p.G98G|CEP192_uc002krw.2_5'Flank	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1676										ovary(4)|pancreas(1)	5						AAAATGCTGGGAACATTGAAG	0.448													40	80					0	0	1	0	0	
C18orf19	125228	broad.mit.edu	37	18	13666620	13666620	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:13666620T>G	uc010dlh.2	-	5	1110	c.678A>C	c.(676-678)CCA>CCC	p.P226P	C18orf19_uc010dlg.2_3'UTR|C18orf19_uc010dli.2_Silent_p.P226P|C18orf19_uc002ksj.3_Silent_p.P226P|C18orf19_uc010dlj.2_RNA	NM_001098801	NP_001092271	Q96ND0	CR019_HUMAN	hypothetical protein LOC125228	226	DUF1279.					integral to membrane				breast(2)	2						CCTTGACGGGTGGCGGCGTGG	0.468													10	31					0	0	1	0	0	
RNMT	8731	broad.mit.edu	37	18	13734563	13734563	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:13734563G>T	uc002ksk.1	+	3	585	c.518G>T	c.(517-519)AGA>ATA	p.R173I	RNMT_uc002ksl.1_Missense_Mutation_p.R173I|RNMT_uc002ksm.1_Missense_Mutation_p.R173I|RNMT_uc010dlk.2_Missense_Mutation_p.R173I|RNMT_uc010xae.1_RNA	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	173					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						TTTTACCTAAGAAACTTTAAT	0.363													25	51					7.92952e-12	8.72397e-12	1	1	0	
CXADRP3	440224	broad.mit.edu	37	18	14478905	14478905	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:14478905T>G	uc010xai.1	-	3		c.659A>C				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						TTTTTTCACTTTGCACTGATC	0.368													18	31					0	0	1	0	0	
POTEC	388468	broad.mit.edu	37	18	14511935	14511935	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:14511935C>T	uc010dln.2	-	11	2045	c.1591G>A	c.(1591-1593)GAA>AAA	p.E531K	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	531	Potential.									skin(3)	3						GCAATTTCTTCCTGCAACATG	0.358													25	56					0	0	1	0	0	
POTEC	388468	broad.mit.edu	37	18	14534909	14534909	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:14534909C>A	uc010dln.2	-	4	1362	c.908G>T	c.(907-909)AGA>ATA	p.R303I	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	303										skin(3)	3						CCTTCCATATCTATCAAGTGC	0.303													9	75					5.50884e-06	5.70595e-06	1	1	0	
POTEC	388468	broad.mit.edu	37	18	14534929	14534929	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:14534929A>C	uc010dln.2	-	4	1342	c.888T>G	c.(886-888)GCT>GCG	p.A296A	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	296	ANK 5.									skin(3)	3						CATTTAAATTAGCTTTTTTCT	0.308													13	95					0	0	1	0	0	
LOC644669	644669	broad.mit.edu	37	18	15316643	15316643	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:15316643C>A	uc002ktd.1	-	5		c.391G>T				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						AGGCTAAAATCTTTGAAGAGG	0.303													3	8					0.004672	0.00471866	1	1	0	
ROCK1	6093	broad.mit.edu	37	18	18622574	18622574	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:18622574C>A	uc002kte.2	-	7	1713	c.772G>T	c.(772-774)GAA>TAA	p.E258*		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	258	Protein kinase.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					CAGTCACATTCTCTTCCATAA	0.393													47	81					7.88023e-25	9.47942e-25	1	1	0	
ROCK1	6093	broad.mit.edu	37	18	18629740	18629740	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:18629740C>T	uc002kte.2	-	3	1217	c.276_splice	c.e3+1	p.L92_splice		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein						actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					AAATAACCTACCAATTGAACT	0.274													21	46					0	0	1	0	0	
ESCO1	114799	broad.mit.edu	37	18	19144267	19144267	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:19144267C>T	uc002kth.1	-	7	2652	c.1718G>A	c.(1717-1719)CGA>CAA	p.R573Q	ESCO1_uc002kti.1_RNA	NM_052911	NP_443143	Q5FWF5	ESCO1_HUMAN	establishment of cohesion 1 homolog 1	573					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding				0						AGAATGATTTCGTGGTGTCTC	0.289													8	18					0	0	1	0	0	
ESCO1	114799	broad.mit.edu	37	18	19153793	19153793	+	Missense_Mutation	SNP	C	T	T	rs149446864		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:19153793C>T	uc002kth.1	-	4	1946	c.1012G>A	c.(1012-1014)GAA>AAA	p.E338K	ESCO1_uc002kti.1_RNA	NM_052911	NP_443143	Q5FWF5	ESCO1_HUMAN	establishment of cohesion 1 homolog 1	338					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding				0						AATTTTATTTCTGTGGGCTTT	0.358													31	107					0	0	1	0	0	
ABHD3	171586	broad.mit.edu	37	18	19284546	19284546	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:19284546G>T	uc002ktl.2	-	1	221	c.81C>A	c.(79-81)TTC>TTA	p.F27L	ABHD3_uc002ktm.2_Missense_Mutation_p.F27L|ABHD3_uc010xao.1_RNA|MIB1_uc002ktp.2_5'Flank|ABHD3_uc002kto.2_Missense_Mutation_p.F27L	NM_138340	NP_612213	Q8WU67	ABHD3_HUMAN	alpha/beta hydrolase domain containing protein	27	Helical; Signal-anchor for type II membrane protein; (Potential).					integral to membrane	carboxylesterase activity			central_nervous_system(1)	1						CCGAGCCGAAGAACCCCACCC	0.657													3	11					0.00909568	0.00917068	1	1	0	
MIB1	57534	broad.mit.edu	37	18	19371466	19371466	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:19371466G>A	uc002ktq.2	+	7	1040	c.1040G>A	c.(1039-1041)CGA>CAA	p.R347Q	MIB1_uc002ktp.2_5'UTR	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	347					Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			GACCTGGAACGAATTAAACTT	0.428													46	83					0	0	1	0	0	
CTAGE1	64693	broad.mit.edu	37	18	19996468	19996468	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:19996468G>A	uc002ktv.1	-	1	1411	c.1307C>T	c.(1306-1308)GCT>GTT	p.A436V		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	436						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					AGCAGTCCAAGCTGCCGACCA	0.299													34	79					0	0	1	0	0	
C18orf8	29919	broad.mit.edu	37	18	21095901	21095901	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:21095901G>A	uc010xax.1	+	6	611	c.490G>A	c.(490-492)GCC>ACC	p.A164T	C18orf8_uc010xau.1_Missense_Mutation_p.A7T|C18orf8_uc010xav.1_Missense_Mutation_p.A116T|C18orf8_uc010xaw.1_Missense_Mutation_p.A7T|C18orf8_uc002kul.2_RNA	NM_013326	NP_037458	Q96DM3	MIC1_HUMAN	colon cancer-associated protein Mic1	164										ovary(1)	1	all_cancers(21;0.000122)|all_epithelial(16;8.08e-07)|Lung NSC(20;0.00206)|all_lung(20;0.00659)|Colorectal(14;0.0202)|Ovarian(20;0.127)					CCCCGAGAGCGCCGTGATCTT	0.478											OREG0024894	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	98					0	0	1	0	0	
LAMA3	3909	broad.mit.edu	37	18	21404477	21404477	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:21404477C>A	uc002kuq.2	+	21	2605	c.2519C>A	c.(2518-2520)TCA>TAA	p.S840*	LAMA3_uc002kur.2_Nonsense_Mutation_p.S840*	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	840	Domain IV 1 (domain IV B).				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GACCCATTTTCAATCACACCA	0.468													35	87					3.11337e-16	3.5706e-16	1	1	0	
LAMA3	3909	broad.mit.edu	37	18	21461926	21461926	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:21461926G>T	uc002kuq.2	+	40	5225	c.5139G>T	c.(5137-5139)GAG>GAT	p.E1713D	LAMA3_uc002kur.2_Missense_Mutation_p.E1713D|LAMA3_uc002kus.3_Missense_Mutation_p.E104D|LAMA3_uc002kut.3_Missense_Mutation_p.E104D	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1713	Domain III A.|Laminin EGF-like 13.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCGCGGGAGAGCACTGTGAAC	0.542													8	18					0.0477658	0.0479884	1	1	0	
ZNF521	25925	broad.mit.edu	37	18	22805217	22805217	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:22805217C>T	uc002kvk.2	-	4	2912	c.2665G>A	c.(2665-2667)GAC>AAC	p.D889N	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.D889N|ZNF521_uc002kvl.2_Missense_Mutation_p.D669N	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	889	C2H2-type 21; degenerate.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					CCACAAATGTCGCAGCCGTAC	0.522			T	PAX5	ALL								36	56					0	0	1	0	0	
TAF4B	6875	broad.mit.edu	37	18	23895348	23895348	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:23895348G>T	uc002kvu.3	+	10	2477	c.1988G>T	c.(1987-1989)AGA>ATA	p.R663I	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Missense_Mutation_p.R668I	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	663	Histone-fold.				transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			CTACAAAAGAGAATTTTAGAC	0.358													21	35					1.55795e-14	1.75964e-14	1	1	0	
CHST9	83539	broad.mit.edu	37	18	24722665	24722665	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:24722665C>T	uc002kwd.2	-	1	307	c.109G>A	c.(109-111)GAA>AAA	p.E37K	C18orf16_uc010xbm.1_Intron|CHST9_uc002kwe.2_Missense_Mutation_p.E37K	NM_031422	NP_113610	Q7L1S5	CHST9_HUMAN	GalNAc-4-sulfotransferase 2	37	Lumenal (Potential).				carbohydrate biosynthetic process|glycosaminoglycan metabolic process|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	extracellular region|Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			ovary(2)|skin(1)	3	all_lung(6;0.0145)|Ovarian(20;0.124)					GTATGTTGTTCTTCAATCCAG	0.328													27	51					0	0	1	0	0	
DSC2	1824	broad.mit.edu	37	18	28669436	28669436	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:28669436C>T	uc002kwl.3	-	5	1050	c.596G>A	c.(595-597)CGT>CAT	p.R199H	DSC2_uc002kwk.3_Missense_Mutation_p.R199H	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	199	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			ATCTACAGGACGAGTACAATA	0.383													39	63					0	0	1	0	0	
DSG1	1828	broad.mit.edu	37	18	28925982	28925982	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:28925982G>A	uc002kwp.2	+	14	2133	c.1921G>A	c.(1921-1923)GAA>AAA	p.E641K	DSG1_uc010xbp.1_5'UTR	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	641	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TGGTGGCAGAGAAATGCAAGA	0.353													26	35					0	0	1	0	0	
DSG4	147409	broad.mit.edu	37	18	28971169	28971169	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:28971169A>C	uc002kwq.2	+	7	948	c.813A>C	c.(811-813)AAA>AAC	p.K271N	DSG4_uc002kwr.2_Missense_Mutation_p.K271N	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	271	Cadherin 3.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			CCTTAGAGAAAACTTCAGTAA	0.403													27	58					0	0	1	0	0	
DSG2	1829	broad.mit.edu	37	18	29122786	29122786	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:29122786G>A	uc002kwu.3	+	14	2493	c.2305G>A	c.(2305-2307)GAA>AAA	p.E769K	uc002kwv.3_Intron	NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	769	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TGCACTGAACGAAGAATTCTT	0.478													25	51					0	0	1	0	0	
MCART2	147407	broad.mit.edu	37	18	29340392	29340392	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:29340392C>T	uc002kxa.2	-	1	452	c.233G>A	c.(232-234)CGA>CAA	p.R78Q		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	78	Solcar 1.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			ATACAAATTTCGAAATCCATC	0.463													43	97					0	0	1	0	0	
RNF138	51444	broad.mit.edu	37	18	29693732	29693732	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:29693732C>A	uc002kxg.2	+	4	740	c.301C>A	c.(301-303)CAT>AAT	p.H101N	RNF138_uc002kxh.2_Intron	NM_016271	NP_057355	Q8WVD3	RN138_HUMAN	ring finger protein 138 isoform 1	101					Wnt receptor signaling pathway	intracellular	ligase activity|protein kinase binding|zinc ion binding				0						CATGAGACATCATTACAAATC	0.294													16	42					1.99824e-07	2.09758e-07	1	1	0	
WBP11P1	441818	broad.mit.edu	37	18	30093140	30093140	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:30093140G>A	uc010dmc.2	+	1		c.1515G>A				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						CACGACCACCGACTTTTACTA	0.602													3	4					0	0	1	0	0	
C18orf34	374864	broad.mit.edu	37	18	30554590	30554590	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:30554590A>G	uc002kxn.2	-	21	2586	c.2444T>C	c.(2443-2445)GTG>GCG	p.V815A	C18orf34_uc010xbq.1_RNA|C18orf34_uc010dme.1_Missense_Mutation_p.V279A|C18orf34_uc010xbr.1_Missense_Mutation_p.V839A|C18orf34_uc010dmf.1_Missense_Mutation_p.V135A|C18orf34_uc002kxo.2_Missense_Mutation_p.V777A|C18orf34_uc002kxp.2_Missense_Mutation_p.V815A	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	815										ovary(1)	1						GAAGAGGACCACCAGTTTGAA	0.507													21	55					0	0	1	0	0	
ASXL3	80816	broad.mit.edu	37	18	31323516	31323516	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:31323516C>A	uc010dmg.1	+	12	3759	c.3704C>A	c.(3703-3705)TCT>TAT	p.S1235Y	ASXL3_uc002kxq.2_Missense_Mutation_p.S942Y	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1235	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AATAAAAATTCTGTCCCTGTA	0.373													25	43					4.26978e-12	4.71084e-12	1	1	0	
NOL4	8715	broad.mit.edu	37	18	31599432	31599432	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:31599432C>T	uc010dmi.2	-	6	1135	c.906G>A	c.(904-906)CAG>CAA	p.Q302Q	NOL4_uc010xbs.1_Silent_p.Q17Q|NOL4_uc002kxr.3_Silent_p.Q138Q|NOL4_uc010xbt.1_Silent_p.Q228Q|NOL4_uc010dmh.2_Silent_p.Q228Q|NOL4_uc010xbu.1_Silent_p.Q302Q|NOL4_uc002kxt.3_Silent_p.Q302Q|NOL4_uc010xbv.1_Silent_p.Q51Q|NOL4_uc010xbw.1_Silent_p.Q188Q	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	302						nucleolus	RNA binding			ovary(3)	3						GGTTCAGTGGCTGTTCATCTT	0.483													21	68					0	0	1	0	0	
DTNA	1837	broad.mit.edu	37	18	32431887	32431887	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:32431887G>T	uc010dmn.1	+	14	1447	c.1446G>T	c.(1444-1446)AAG>AAT	p.K482N	DTNA_uc010xbx.1_Missense_Mutation_p.K232N|DTNA_uc002kxv.3_Missense_Mutation_p.K425N|DTNA_uc002kxw.2_Missense_Mutation_p.K425N|DTNA_uc010dmj.2_Missense_Mutation_p.K422N|DTNA_uc002kxz.2_Missense_Mutation_p.K422N|DTNA_uc002kxy.2_Missense_Mutation_p.K422N|DTNA_uc010dml.2_Missense_Mutation_p.K422N|DTNA_uc002kyb.3_Missense_Mutation_p.K479N|DTNA_uc010dmm.2_Missense_Mutation_p.K482N|DTNA_uc010xby.1_Missense_Mutation_p.K172N|DTNA_uc010dmo.2_Missense_Mutation_p.K104N|DTNA_uc002kyd.3_Missense_Mutation_p.K104N|DTNA_uc010xbz.1_Missense_Mutation_p.K191N|DTNA_uc010xca.1_Missense_Mutation_p.K134N|DTNA_uc002kye.2_Missense_Mutation_p.K130N	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	482	Potential.				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						TAGAAAACAAGAACAGGTGAG	0.453													11	35					0.000673444	0.000684558	1	1	0	
ZNF397OS	100101467	broad.mit.edu	37	18	32833515	32833515	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:32833515T>G	uc002kym.2	-	4	1612	c.1384A>C	c.(1384-1386)ATT>CTT	p.I462L	ZNF397_uc010dmq.2_Intron|ZNF397_uc010dmr.2_Intron|ZNF397_uc002kyj.2_Intron|ZNF397OS_uc002kyl.2_Missense_Mutation_p.E49D|ZNF397OS_uc010xce.1_Missense_Mutation_p.I462L	NM_001112734	NP_001106205	Q86W11	ZSC30_HUMAN	zinc finger protein 397 opposite strand	462	C2H2-type 6.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCAGTGTGAATTCTCTGGTGC	0.408													29	62					0	0	1	0	0	
ZNF397	84307	broad.mit.edu	37	18	32837896	32837896	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:32837896T>C	uc002kyj.2	+	6	957	c.822T>C	c.(820-822)TTT>TTC	p.F274F	ZNF397_uc010dmq.2_Silent_p.F244F|ZNF397_uc010dmr.2_RNA|ZNF397OS_uc002kym.2_Intron|ZNF397OS_uc010xce.1_Intron	NM_032347	NP_115723	Q8NF99	ZN397_HUMAN	zinc finger protein 397 isoform 2	Error:Variant_position_missing_in_Q8NF99_after_alignment					viral reproduction	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ttacagatttttcctgaagaa	0.08													61	93					0	0	1	0	0	
SLC39A6	25800	broad.mit.edu	37	18	33689577	33689577	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:33689577G>A	uc010dmy.2	-	10	2537	c.2247C>T	c.(2245-2247)ATC>ATT	p.I749I		NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	749	Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						TACGAAACACGATTTTATGTT	0.348													44	62					0	0	1	0	0	
SLC39A6	25800	broad.mit.edu	37	18	33706546	33706546	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:33706546C>T	uc010dmy.2	-	2	715	c.425G>A	c.(424-426)CGA>CAA	p.R142Q	SLC39A6_uc002kzj.2_Intron	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	142	Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						AAGAGCTTTTCGCTTATTTTT	0.294													19	66					0	0	1	0	0	
ELP2	55250	broad.mit.edu	37	18	33726217	33726217	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:33726217G>A	uc002kzk.1	+	11	1008	c.998G>A	c.(997-999)CGA>CAA	p.R333Q	ELP2_uc010xcg.1_Missense_Mutation_p.R398Q|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Missense_Mutation_p.R307Q|ELP2_uc010xch.1_Intron|ELP2_uc002kzn.1_Intron|ELP2_uc002kzo.1_Missense_Mutation_p.R263Q	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	333					regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						GTACAGGTTCGAGTAGGTGAA	0.398													84	144					0	0	1	0	0	
MOCOS	55034	broad.mit.edu	37	18	33840070	33840070	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:33840070A>C	uc002kzq.3	+	13	2364	c.2341A>C	c.(2341-2343)ATC>CTC	p.I781L		NM_017947	NP_060417	Q96EN8	MOCOS_HUMAN	molybdenum cofactor sulfurase	781	MOSC.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	lyase activity|Mo-molybdopterin cofactor sulfurase activity|molybdenum ion binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	CAATATTATTATCAATGGAAA	0.383													72	136					0	0	1	0	0	
C18orf10	25941	broad.mit.edu	37	18	34376819	34376819	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:34376819A>C	uc002kzw.1	-	7	1280	c.852T>G	c.(850-852)ACT>ACG	p.T284T	C18orf10_uc002kzv.1_Intron|C18orf10_uc010xci.1_Silent_p.T249T|C18orf10_uc002kzx.1_Silent_p.T241T	NM_015476	NP_056291	Q68CL5	TPGS2_HUMAN	tubulin polyglutamylase complex subunit 2	284						cytoplasm|microtubule				skin(1)	1						AAGTGGAGGAAGTGGAGGGAC	0.562													30	60					0	0	1	0	0	
CELF4	56853	broad.mit.edu	37	18	34854414	34854414	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:34854414C>A	uc002lae.2	-	6	1057	c.661G>T	c.(661-663)GCC>TCC	p.A221S	CELF4_uc010dnd.1_Missense_Mutation_p.A220S|CELF4_uc002lag.2_Missense_Mutation_p.A211S|CELF4_uc002laf.2_Missense_Mutation_p.A216S|CELF4_uc002lai.2_Missense_Mutation_p.A206S|CELF4_uc002lah.1_5'Flank|CELF4_uc002laj.1_Missense_Mutation_p.S56I	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	221	Sufficient for RNA-binding and MSE- dependent splicing activity.|RRM 2.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						CTGGACGAGGCTCCCTGCGGC	0.701													38	71					7.91308e-09	8.44832e-09	1	1	0	
PIK3C3	5289	broad.mit.edu	37	18	39537548	39537548	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:39537548G>A	uc002lap.2	+	2	140	c.82G>A	c.(82-84)GGG>AGG	p.G28R	PIK3C3_uc010xcl.1_Intron|PIK3C3_uc002lao.2_Missense_Mutation_p.G28R	NM_002647	NP_002638	Q8NEB9	PK3C3_HUMAN	catalytic phosphatidylinositol 3-kinase 3	28					cell cycle|cytokinesis|fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	midbody|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|protein binding			lung(8)|ovary(1)|breast(1)	10						AAGCTTGGAAGGGAAGAGAGA	0.363										TSP Lung(28;0.18)			21	39					0	0	1	0	0	
PIK3C3	5289	broad.mit.edu	37	18	39593453	39593453	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:39593453A>C	uc002lap.2	+	11	1276	c.1218A>C	c.(1216-1218)GAA>GAC	p.E406D	PIK3C3_uc010xcl.1_Missense_Mutation_p.E343D	NM_002647	NP_002638	Q8NEB9	PK3C3_HUMAN	catalytic phosphatidylinositol 3-kinase 3	406					cell cycle|cytokinesis|fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	midbody|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|protein binding			lung(8)|ovary(1)|breast(1)	10						TCAAATATGAAAATTTTGATG	0.303										TSP Lung(28;0.18)			48	88					0	0	1	0	0	
SETBP1	26040	broad.mit.edu	37	18	42532601	42532601	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:42532601C>A	uc010dni.2	+	4	3592	c.3296C>A	c.(3295-3297)TCC>TAC	p.S1099Y		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1099						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CACACAAACTCCCACGTAAAG	0.542									Schinzel-Giedion_syndrome				23	51					1.10923e-09	1.19438e-09	1	1	0	
KIAA1632	57724	broad.mit.edu	37	18	43459029	43459029	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:43459029C>A	uc002lbm.2	-	33	5918	c.5818G>T	c.(5818-5820)GAC>TAC	p.D1940Y	KIAA1632_uc010xcq.1_Missense_Mutation_p.D494Y|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Missense_Mutation_p.D815Y	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1940					autophagy						0						ATTTCTAAGTCAATCAGCCTT	0.418													34	66					1.03484e-13	1.15859e-13	1	1	0	
KIAA1632	57724	broad.mit.edu	37	18	43502362	43502362	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:43502362C>T	uc002lbm.2	-	16	3143	c.3043G>A	c.(3043-3045)GCG>ACG	p.A1015T	KIAA1632_uc002lbo.1_Missense_Mutation_p.A1015T	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	1015					autophagy						0						GGCATGCCCGCTTTCACAGCC	0.507													19	50					0	0	1	0	0	
KIAA1632	57724	broad.mit.edu	37	18	43519684	43519684	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:43519684A>G	uc002lbm.2	-	10	2081	c.1981T>C	c.(1981-1983)TAT>CAT	p.Y661H	KIAA1632_uc002lbo.1_Missense_Mutation_p.Y661H	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	661					autophagy						0						TGGCTCACATACTGTGCCCAA	0.418													18	29					0	0	1	0	0	
TCEB3B	51224	broad.mit.edu	37	18	44561339	44561339	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:44561339G>A	uc002lcr.1	-	1	650	c.297C>T	c.(295-297)TTC>TTT	p.F99F	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	99					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GAGCCTCCCCGAAGCGCTGTC	0.657													25	47					0	0	1	0	0	
HDHD2	84064	broad.mit.edu	37	18	44662730	44662730	+	Silent	SNP	G	A	A	rs147000827		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:44662730G>A	uc002lcs.2	-	2	214	c.81C>T	c.(79-81)GGC>GGT	p.G27G	HDHD2_uc002lct.2_5'UTR	NM_032124	NP_115500	Q9H0R4	HDHD2_HUMAN	haloacid dehalogenase-like hydrolase domain	27							hydrolase activity				0						CTTCCTGTGCGCCTGGCACAG	0.463													23	39					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	18	44775126	44775126	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:44775126G>A	uc010dnt.1	-	1	429	c.429C>T	c.(427-429)TTC>TTT	p.F143F						RecName: Full=Ladybird homeobox corepressor 1-like protein; AltName: Full=LBX1 corepressor 1-like protein; AltName: Full=Functional Smad-suppressing element on chromosome 18;          Short=Fussel-18;																		CGTCGAAGGCGAAATTGTCTG	0.627													4	5					0	0	1	0	0	
RPL17	6139	broad.mit.edu	37	18	47014895	47014895	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:47014895C>T	uc002ldo.2	-	6	818	c.549G>A	c.(547-549)CGG>CGA	p.R183R	C18orf32_uc002ldk.1_5'Flank|C18orf32_uc002ldl.2_5'Flank|C18orf32_uc002ldm.1_Intron|RPL17_uc002ldn.2_Silent_p.R145R|RPL17_uc002ldp.2_Silent_p.R183R|RPL17_uc002ldq.2_Silent_p.R183R|RPL17_uc010xdg.1_Silent_p.R145R	NM_001035006	NP_001030178	P18621	RL17_HUMAN	ribosomal protein L17	183					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0						GAATTTACTCCCGTGCCATAA	0.328													6	21					0	0	1	0	0	
MAPK4	5596	broad.mit.edu	37	18	48241532	48241532	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:48241532C>T	uc002lev.2	+	3	1630	c.630C>T	c.(628-630)ATC>ATT	p.I210I	MAPK4_uc010xdm.1_5'UTR|MAPK4_uc010doz.2_Silent_p.I210I	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	210	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		CCAAAGCCATCGACATGTGGG	0.517													20	40					0	0	1	0	0	
DCC	1630	broad.mit.edu	37	18	50451736	50451736	+	Silent	SNP	C	T	T	rs147124029		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:50451736C>T	uc002lfe.1	+	5	1568	c.981C>T	c.(979-981)GTC>GTT	p.V327V	DCC_uc010xdr.1_Silent_p.V175V	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	327	Extracellular (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGCTCACAGTCTTGGGTAAGT	0.373													62	54					0	0	1	0	0	
POLI	11201	broad.mit.edu	37	18	51820532	51820532	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:51820532G>T	uc002lfj.3	+	10	1986	c.1918G>T	c.(1918-1920)GAA>TAA	p.E640*	POLI_uc010xds.1_Nonsense_Mutation_p.E561*|POLI_uc002lfk.3_Nonsense_Mutation_p.E537*|POLI_uc010dpg.2_Nonsense_Mutation_p.E236*	NM_007195	NP_009126	Q9UNA4	POLI_HUMAN	DNA polymerase iota	640					DNA repair|DNA replication	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding|protein binding			ovary(2)|kidney(1)	3				Colorectal(16;0.0234)|READ - Rectum adenocarcinoma(59;0.197)		AGGACCTAAAGAACCTCAAGG	0.348								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					15	11					1.49906e-05	1.54644e-05	1	1	0	
STARD6	147323	broad.mit.edu	37	18	51851142	51851142	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:51851142A>C	uc010xdt.1	-	6	583	c.583T>G	c.(583-585)TTC>GTC	p.F195V		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	195	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		TTGAGGATGAAGTTTACTAAG	0.373													38	27					0	0	1	0	0	
C18orf54	162681	broad.mit.edu	37	18	51886948	51886948	+	Silent	SNP	G	A	A	rs139710634	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:51886948G>A	uc002lfn.3	+	2	122	c.6G>A	c.(4-6)GCG>GCA	p.A2A	C18orf54_uc002lfo.3_Silent_p.A2A	NM_173529	NP_775800	Q8IYD9	CR054_HUMAN	hypothetical protein LOC162681 precursor	2						extracellular region				ovary(1)|skin(1)	2				Colorectal(16;0.0206)|READ - Rectum adenocarcinoma(59;0.186)		AAGCCATGGCGAAATCAAAGA	0.378													37	30					0	0	1	0	0	
NARS	4677	broad.mit.edu	37	18	55282941	55282941	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:55282941C>T	uc002lgs.2	-	4	502	c.274G>A	c.(274-276)GAA>AAA	p.E92K	NARS_uc002lgt.2_Missense_Mutation_p.E91K|NARS_uc010xea.1_5'UTR|NARS_uc010xeb.1_RNA|NARS_uc010xec.1_Missense_Mutation_p.E92K|NARS_uc010xed.1_Missense_Mutation_p.E59K	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	92					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	AGGTTCTTTTCTCTTCGTAAA	0.368													30	41					0	0	1	0	0	
ATP8B1	5205	broad.mit.edu	37	18	55336558	55336558	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:55336558C>A	uc002lgw.2	-	17	2089	c.2089G>T	c.(2089-2091)GAC>TAC	p.D697Y	uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	697	Cytoplasmic (Potential).		Missing (in PFIC1).		ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				ACAATTAAGTCTTTTTCAATC	0.313									Byler_disease				17	28					4.75885e-15	5.40475e-15	1	1	0	
ALPK2	115701	broad.mit.edu	37	18	56204821	56204821	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:56204821T>C	uc002lhj.3	-	5	2812	c.2598A>G	c.(2596-2598)ACA>ACG	p.T866T	ALPK2_uc002lhk.1_Silent_p.T197T	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	866							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CAGACACTTGTGTCTGAAAAA	0.408													21	23					0	0	1	0	0	
LMAN1	3998	broad.mit.edu	37	18	57013239	57013239	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:57013239A>C	uc002lhz.2	-	8	899	c.867T>G	c.(865-867)TAT>TAG	p.Y289*		NM_005570	NP_005561	P49257	LMAN1_HUMAN	lectin, mannose-binding, 1 precursor	289	Lumenal (Potential).				blood coagulation|ER to Golgi vesicle-mediated transport|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			skin(1)	1		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	ATTCCTCCTGATACTTTTCTT	0.373													36	25					0	0	1	0	0	
KIAA1468	57614	broad.mit.edu	37	18	59895681	59895681	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:59895681A>G	uc002lil.2	+	8	1513	c.1298A>G	c.(1297-1299)AAC>AGC	p.N433S	KIAA1468_uc002lik.1_Missense_Mutation_p.N433S|KIAA1468_uc010xel.1_Missense_Mutation_p.N433S|KIAA1468_uc002lim.2_Missense_Mutation_p.N77S	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	433							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				AAGGGAAAAAACACAGACATC	0.433													30	42					0	0	1	0	0	
KDSR	2531	broad.mit.edu	37	18	61022741	61022741	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:61022741A>G	uc010dpw.2	-	4	466	c.311T>C	c.(310-312)GTC>GCC	p.V104A	KDSR_uc010xem.1_Missense_Mutation_p.V104A	NM_002035	NP_002026	Q06136	KDSR_HUMAN	3-ketodihydrosphingosine reductase precursor	104	Cytoplasmic (Potential).				3-keto-sphinganine metabolic process	endoplasmic reticulum membrane|extracellular space|integral to membrane	3-dehydrosphinganine reductase activity|binding			skin(1)	1						TTGTTTTATGACATTCTCTAC	0.363													11	24					0	0	1	0	0	
SERPINB13	5275	broad.mit.edu	37	18	61261591	61261591	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:61261591A>C	uc002ljc.2	+	6	643	c.475A>C	c.(475-477)AAA>CAA	p.K159Q	SERPINB13_uc002ljd.2_Missense_Mutation_p.K23Q|SERPINB13_uc010xep.1_Missense_Mutation_p.K168Q|SERPINB13_uc010xeq.1_5'UTR|SERPINB13_uc010xer.1_5'UTR	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	159					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						ATTTGCAGAAAAAATCAAGGA	0.373													14	18					0	0	1	0	0	
SERPINB2	5055	broad.mit.edu	37	18	61558832	61558832	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:61558832G>T	uc010xeu.1	+	3	487	c.154G>T	c.(154-156)GAC>TAC	p.D52Y	SERPINB2_uc002ljo.2_Missense_Mutation_p.D52Y|SERPINB2_uc010dqh.2_5'UTR	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	52					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	CAGCACCGAAGACCAGATGGC	0.527													18	11					0.000958276	0.000973728	1	1	0	
SERPINB2	5055	broad.mit.edu	37	18	61570322	61570322	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:61570322C>T	uc010xeu.1	+	9	1364	c.1031C>T	c.(1030-1032)TCG>TTG	p.S344L	SERPINB2_uc002ljo.2_Missense_Mutation_p.S344L|SERPINB2_uc010dqh.2_Missense_Mutation_p.S274L|SERPINB2_uc002ljp.1_Intron|SERPINB2_uc002ljq.1_Intron	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	344					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TCAGGGATGTCGGAGAGGAAT	0.502													28	30					0	0	1	0	0	
SERPINB10	5273	broad.mit.edu	37	18	61582874	61582874	+	Missense_Mutation	SNP	T	G	G	rs138905204		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:61582874T>G	uc010xev.1	+	2	220	c.130T>G	c.(130-132)TTG>GTG	p.L44V	SERPINB2_uc002ljp.1_Missense_Mutation_p.L185V|SERPINB2_uc002ljq.1_Missense_Mutation_p.L158V|SERPINB10_uc010xew.1_Missense_Mutation_p.L44V	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	44						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				CATAGTGTATTTGGGCGCCAA	0.443													30	26					0	0	1	0	0	
CDH7	1005	broad.mit.edu	37	18	63430218	63430218	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:63430218G>A	uc002ljz.2	+	2	465	c.140G>A	c.(139-141)CGC>CAC	p.R47H	CDH7_uc002lka.2_Missense_Mutation_p.R47H|CDH7_uc002lkb.2_Missense_Mutation_p.R47H	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	47	Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CGGACCAAGCGCAGCTGGGTG	0.473													5	33					0	0	1	0	0	
CDH19	28513	broad.mit.edu	37	18	64176344	64176344	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:64176344G>A	uc002lkc.1	-	11	1854	c.1716C>T	c.(1714-1716)GAC>GAT	p.D572D	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Intron	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	572	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				TGTCACCACAGTCACAGACAT	0.453													64	54					0	0	1	0	0	
DSEL	92126	broad.mit.edu	37	18	65179358	65179358	+	Missense_Mutation	SNP	T	C	C	rs112650435		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:65179358T>C	uc002lke.1	-	2	3742	c.2518A>G	c.(2518-2520)AAA>GAA	p.K840E		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	830						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				CTTGTCCATTTTGCACAAATG	0.423													83	73					0	0	1	0	0	
DSEL	92126	broad.mit.edu	37	18	65181050	65181050	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:65181050T>C	uc002lke.1	-	2	2050	c.826A>G	c.(826-828)AAT>GAT	p.N276D		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	266						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				ACAATATGATTCAATAGAAAC	0.418													43	36					0	0	1	0	0	
SOCS6	9306	broad.mit.edu	37	18	67993118	67993118	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:67993118C>A	uc002lkr.1	+	2	1530	c.1214C>A	c.(1213-1215)TCT>TAT	p.S405Y	SOCS6_uc010dqq.2_Missense_Mutation_p.S405Y	NM_004232	NP_004223	O14544	SOCS6_HUMAN	suppressor of cytokine signaling 6	405	SH2.				defense response|JAK-STAT cascade|negative regulation of signal transduction|regulation of growth	cytoplasm				large_intestine(1)|lung(1)	2		Esophageal squamous(42;0.129)|Colorectal(73;0.152)				CCAGATGGTTCTTTTCTTGTT	0.468													40	29					7.53189e-24	9.03518e-24	1	1	0	
CNDP1	84735	broad.mit.edu	37	18	72229308	72229308	+	Missense_Mutation	SNP	G	A	A	rs146707393	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:72229308G>A	uc002llq.2	+	5	704	c.493G>A	c.(493-495)GAC>AAC	p.D165N	uc002llr.2_5'Flank	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	165		Zinc 1 (By similarity).|Zinc 2 (By similarity).		D->A: Loss of activity.	proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		AGGAGCGACCGACAACAAAGG	0.507													30	34					0	0	1	0	0	
ZNF236	7776	broad.mit.edu	37	18	74627729	74627729	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:74627729G>A	uc002lmi.2	+	19	3380	c.3182G>A	c.(3181-3183)CGA>CAA	p.R1061Q	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	1061	C2H2-type 21.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		GAGGGTTTCCGAACTACAGTG	0.493													17	22					0	0	1	0	0	
SALL3	27164	broad.mit.edu	37	18	76753496	76753496	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:76753496C>T	uc002lmt.2	+	2	1505	c.1505C>T	c.(1504-1506)TCG>TTG	p.S502L	SALL3_uc010dra.2_Missense_Mutation_p.S109L	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	502					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		TACGGCATGTCGCTGCCCCCC	0.667													13	9					0	0	1	0	0	
NFATC1	4772	broad.mit.edu	37	18	77211696	77211696	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:77211696C>T	uc010xfg.1	+	6	2236	c.1783C>T	c.(1783-1785)CTG>TTG	p.L595L	NFATC1_uc002lnc.1_Silent_p.L595L|NFATC1_uc010xff.1_Silent_p.S566S|NFATC1_uc002lnd.2_Silent_p.L595L|NFATC1_uc002lne.2_Silent_p.L123L|NFATC1_uc010xfh.1_Silent_p.L595L|NFATC1_uc010xfi.1_Silent_p.L582L|NFATC1_uc010xfj.1_Silent_p.L123L|NFATC1_uc002lnf.2_Silent_p.L582L|NFATC1_uc002lng.2_Silent_p.L582L|NFATC1_uc010xfk.1_Silent_p.L582L	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	595					intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		AGCTCAGGAGCTGCCTCTGGT	0.637													12	16					0	0	1	0	0	
NFATC1	4772	broad.mit.edu	37	18	77246279	77246279	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:77246279T>G	uc010xfg.1	+	9	2577	c.2124T>G	c.(2122-2124)GAT>GAG	p.D708E	NFATC1_uc002lnd.2_Missense_Mutation_p.D708E|NFATC1_uc002lne.2_Missense_Mutation_p.D236E|NFATC1_uc010xfh.1_Intron|NFATC1_uc010xfj.1_Missense_Mutation_p.D236E|NFATC1_uc002lnf.2_Missense_Mutation_p.D695E|NFATC1_uc002lng.2_Missense_Mutation_p.D695E|NFATC1_uc010xfk.1_Intron	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	708	Trans-activation domain B (TAD-B).				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		CCACTGATGATTATGAGCCTG	0.488													79	78					0	0	1	0	0	
CTDP1	9150	broad.mit.edu	37	18	77456022	77456022	+	Silent	SNP	G	A	A	rs147215606		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:77456022G>A	uc002lnh.1	+	3	591	c.444G>A	c.(442-444)GCG>GCA	p.A148A	CTDP1_uc002lni.1_Silent_p.A148A|CTDP1_uc010drd.1_Silent_p.A148A	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	148					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		TGTCCACGGCGACCGTGTCCA	0.622													11	15					0	0	1	0	0	
KCNG2	26251	broad.mit.edu	37	18	77623869	77623869	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:77623869G>A	uc010xfl.1	+	1	202	c.202G>A	c.(202-204)GAG>AAG	p.E68K		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	68	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		GAGCCGCGACGAGTTCTTCTT	0.731													4	10					0	0	1	0	0	
HCN2	610	broad.mit.edu	37	19	603624	603624	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:603624A>G	uc002lpe.2	+	2	766	c.713A>G	c.(712-714)GAT>GGT	p.D238G		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	238	Extracellular (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTCTTCAAGGATGAGACCACT	0.567													8	28					0	0	1	0	0	
ABCA7	10347	broad.mit.edu	37	19	1053340	1053340	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:1053340T>G	uc002lqw.3	+	24	3464	c.3233T>G	c.(3232-3234)CTG>CGG	p.L1078R	ABCA7_uc010dsb.1_Missense_Mutation_p.L940R	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1078					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTCCTCAGCTGCTGGCCCTG	0.682													10	13					0	0	1	0	0	
APC2	10297	broad.mit.edu	37	19	1453554	1453554	+	Missense_Mutation	SNP	C	A	A	rs61735595		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:1453554C>A	uc002lsr.1	+	4	565	c.357C>A	c.(355-357)AGC>AGA	p.S119R	APC2_uc002lss.1_5'UTR|APC2_uc002lst.1_Missense_Mutation_p.S119R|APC2_uc002lsu.1_Missense_Mutation_p.S119R	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	119					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAAGGACAGCTTTGGGGAGC	0.701													8	16					0.0381472	0.0383344	1	1	0	
APC2	10297	broad.mit.edu	37	19	1466116	1466116	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:1466116G>A	uc002lsr.1	+	15	3024	c.2816G>A	c.(2815-2817)CGC>CAC	p.R939H	APC2_uc002lss.1_Missense_Mutation_p.R521H|APC2_uc002lst.1_Missense_Mutation_p.R939H|APC2_uc002lsu.1_Missense_Mutation_p.R938H|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	939					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TACTGCCCACGCGAACATATG	0.721													6	7					0	0	1	0	0	
ATP8B3	148229	broad.mit.edu	37	19	1800271	1800271	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:1800271A>G	uc002ltw.2	-	13	1564	c.1330T>C	c.(1330-1332)TCC>CCC	p.S444P	ATP8B3_uc002ltv.2_Missense_Mutation_p.S397P|ATP8B3_uc002ltx.2_RNA|ATP8B3_uc002lty.1_Missense_Mutation_p.S192P|ATP8B3_uc002ltz.1_Missense_Mutation_p.S391P	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	444	Helical; (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGAACATGGACATCGGGATG	0.642													13	38					0	0	1	0	0	
TMPRSS9	360200	broad.mit.edu	37	19	2413960	2413960	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:2413960C>T	uc010xgx.1	+	9	1415	c.1415C>T	c.(1414-1416)TCG>TTG	p.S472L	TMPRSS9_uc002lvv.1_Missense_Mutation_p.S506L	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	472	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCACCAAATCGATGCAGGCC	0.607													10	9					0	0	1	0	0	
ZNF57	126295	broad.mit.edu	37	19	2916112	2916112	+	Missense_Mutation	SNP	C	A	A	rs143620899	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:2916112C>A	uc002lwr.2	+	3	315	c.167C>A	c.(166-168)TCT>TAT	p.S56Y	ZNF57_uc010xha.1_Missense_Mutation_p.S24Y	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	56	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGTCAGTTTCTCTGCAGGAT	0.358													26	58					7.41945e-09	7.92233e-09	1	1	0	
ZNF57	126295	broad.mit.edu	37	19	2917762	2917762	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:2917762A>G	uc002lwr.2	+	4	1291	c.1143A>G	c.(1141-1143)GAA>GAG	p.E381E	ZNF57_uc010xha.1_Silent_p.E349E	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	381	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		CGTTTAGAGAACATGTGAGAA	0.448													35	74					0	0	1	0	0	
TLE6	79816	broad.mit.edu	37	19	2989114	2989114	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:2989114G>A	uc002lwu.2	+	11	827	c.427G>A	c.(427-429)GGG>AGG	p.G143R	TLE6_uc002lwt.2_Missense_Mutation_p.G266R|TLE6_uc010dtg.2_Missense_Mutation_p.G266R|TLE6_uc002lwv.2_Missense_Mutation_p.G47R	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	143					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCCTTGCCCGGGCAGTCAAA	0.612													30	51					0	0	1	0	0	
GNA15	2769	broad.mit.edu	37	19	3155824	3155824	+	Silent	SNP	C	T	T	rs140382547		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:3155824C>T	uc002lxf.2	+	5	876	c.618C>T	c.(616-618)ATC>ATT	p.I206I		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	206					activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		CCTGTAGGATCGTGGACGTCG	0.557													25	48					0	0	1	0	0	
MATK	4145	broad.mit.edu	37	19	3779599	3779599	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:3779599T>C	uc002lyt.2	-	10	1259	c.859A>G	c.(859-861)AAC>GAC	p.N287D	MATK_uc002lyv.2_Missense_Mutation_p.N288D|MATK_uc002lyu.2_Missense_Mutation_p.N246D|MATK_uc010dtq.2_Missense_Mutation_p.N287D	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	287	Protein kinase.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCACCAGGTTCTCGTGTTGC	0.706													8	17					0	0	1	0	0	
FSD1	79187	broad.mit.edu	37	19	4310278	4310278	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:4310278G>A	uc002lzy.2	+	5	507	c.354G>A	c.(352-354)AAG>AAA	p.K118K	FSD1_uc010xie.1_Silent_p.K105K|FSD1_uc010xif.1_Missense_Mutation_p.A102T|FSD1_uc002lzz.2_Silent_p.K118K|FSD1_uc002maa.2_5'Flank	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	118	COS.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGCTGCCAAGCAAATCAAAG	0.388													88	236					0	0	1	0	0	
SEMA6B	10501	broad.mit.edu	37	19	4557207	4557207	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:4557207G>A	uc010duc.1	-	3	312	c.274C>T	c.(274-276)CCC>TCC	p.P92S	SEMA6B_uc010dud.2_Missense_Mutation_p.P92S|SEMA6B_uc010xih.1_Missense_Mutation_p.P92S	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	92	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		GACGTGGGGGGCTCCAGCTCT	0.682													15	17					0	0	1	0	0	
PLIN3	10226	broad.mit.edu	37	19	4859985	4859985	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:4859985C>T	uc002mbj.2	-	3	295	c.118G>A	c.(118-120)GAC>AAC	p.D40N	PLIN3_uc002mbk.2_Missense_Mutation_p.D40N|PLIN3_uc002mbl.3_Missense_Mutation_p.D40N	NM_005817	NP_005808	O60664	PLIN3_HUMAN	mannose 6 phosphate receptor binding protein 1	40					vesicle-mediated transport	endosome membrane|Golgi apparatus|lipid particle	protein binding				0					Galsulfase(DB01279)|Idursulfase(DB01271)	GACACCATGTCGCAGGTGGAG	0.622													5	44					0	0	1	0	0	
ARRDC5	645432	broad.mit.edu	37	19	4891415	4891415	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:4891415G>A	uc002mbm.2	-	3	672	c.672C>T	c.(670-672)TTC>TTT	p.F224F		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	224					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		CATACAGGGCGAATACGACCG	0.562													12	34					0	0	1	0	0	
RANBP3	8498	broad.mit.edu	37	19	5917945	5917945	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:5917945C>T	uc002mdw.2	-	16	1747	c.1520G>A	c.(1519-1521)CGC>CAC	p.R507H	RANBP3_uc002mdv.2_Missense_Mutation_p.R226H|RANBP3_uc002mdx.2_Missense_Mutation_p.R502H|RANBP3_uc002mdy.2_Missense_Mutation_p.R439H|RANBP3_uc002mdz.2_Missense_Mutation_p.R434H|RANBP3_uc010duq.2_Missense_Mutation_p.R412H|RANBP3_uc002mea.2_Missense_Mutation_p.R374H|RANBP3_uc010xix.1_Missense_Mutation_p.R379H	NM_007322	NP_015561	Q9H6Z4	RANB3_HUMAN	RAN binding protein 3 isoform RANBP3-d	507	RanBD1.				intracellular transport|protein transport	cytoplasm|nucleus	Ran GTPase binding			breast(1)	1						GGCCAGGATGCGGTGGTGCAG	0.682													29	56					0	0	1	0	0	
RFX2	5990	broad.mit.edu	37	19	5997113	5997113	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:5997113G>A	uc002meb.2	-	16	2240	c.1971C>T	c.(1969-1971)GTC>GTT	p.V657V	RFX2_uc002mec.2_Silent_p.V632V	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	657					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						TGGCCTCCGCGACGCGGTGCT	0.692													34	53					0	0	1	0	0	
RFX2	5990	broad.mit.edu	37	19	6016224	6016224	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:6016224G>T	uc002meb.2	-	7	925	c.656C>A	c.(655-657)TCT>TAT	p.S219Y	RFX2_uc002mec.2_Missense_Mutation_p.S194Y	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	219	RFX-type winged-helix.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						GTTGTAAAGAGAACTTCTGGG	0.512													24	48					2.41591e-17	2.79654e-17	1	1	0	
ACSBG2	81616	broad.mit.edu	37	19	6165951	6165951	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:6165951G>A	uc002mef.1	+	7	890	c.663G>A	c.(661-663)GCG>GCA	p.A221A	ACSBG2_uc002mee.1_Silent_p.A34A|ACSBG2_uc002meg.1_Silent_p.A221A|ACSBG2_uc002meh.1_Silent_p.A221A|ACSBG2_uc002mei.1_Silent_p.A171A|ACSBG2_uc010xiz.1_Silent_p.A221A	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	221					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						GCCAGAAGGCGAATCAATGCG	0.527											OREG0025194	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	71					0	0	1	0	0	
C3	718	broad.mit.edu	37	19	6684608	6684608	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:6684608G>A	uc002mfm.2	-	32	4145	c.4083C>T	c.(4081-4083)TTC>TTT	p.F1361F	C3_uc002mfl.2_Silent_p.F97F	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1361					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CCTTGAGGTCGAATTTATTAC	0.483													49	95					0	0	1	0	0	
C3	718	broad.mit.edu	37	19	6707489	6707489	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:6707489G>A	uc002mfm.2	-	16	2097	c.2035C>T	c.(2035-2037)CGA>TGA	p.R679*		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	679					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TTGTCCATTCGCTTCTCCGTG	0.682													37	68					0	0	1	0	0	
C3	718	broad.mit.edu	37	19	6711129	6711129	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:6711129C>A	uc002mfm.2	-	12	1410	c.1348G>T	c.(1348-1350)GGC>TGC	p.G450C		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	450					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TTGGAGTTGCCCACGGTGCTG	0.607													41	77					1.465e-08	1.56044e-08	1	1	0	
C3	718	broad.mit.edu	37	19	6712386	6712386	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:6712386G>A	uc002mfm.2	-	11	1213	c.1151C>T	c.(1150-1152)GCC>GTC	p.A384V		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	384					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GACTCGGTAGGCTGGAGAGCC	0.632													12	42					0	0	1	0	0	
EMR1	2015	broad.mit.edu	37	19	6904062	6904062	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:6904062G>A	uc002mfw.2	+	8	856	c.818G>A	c.(817-819)CGC>CAC	p.R273H	EMR1_uc010dvc.2_Missense_Mutation_p.R273H|EMR1_uc010dvb.2_Missense_Mutation_p.R221H|EMR1_uc010xji.1_Missense_Mutation_p.R132H|EMR1_uc010xjj.1_Intron	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	273	Extracellular (Potential).|EGF-like 6; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					GATGAGTGCCGCCAAGATCCA	0.473													31	62					0	0	1	0	0	
EMR1	2015	broad.mit.edu	37	19	6908736	6908736	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:6908736G>A	uc002mfw.2	+	10	1113	c.1075G>A	c.(1075-1077)GTT>ATT	p.V359I	EMR1_uc010dvc.2_Missense_Mutation_p.V359I|EMR1_uc010dvb.2_Missense_Mutation_p.V307I|EMR1_uc010xji.1_Missense_Mutation_p.V218I|EMR1_uc010xjj.1_Missense_Mutation_p.V182I	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	359	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CATCTTCAGCGTTCTGGACAA	0.383													25	83					0	0	1	0	0	
ZNF557	79230	broad.mit.edu	37	19	7081448	7081448	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:7081448C>A	uc002mgb.2	+	6	789	c.304C>A	c.(304-306)CTC>ATC	p.L102I	ZNF557_uc002mga.2_Missense_Mutation_p.L109I|ZNF557_uc002mgc.2_Missense_Mutation_p.L109I	NM_001044388	NP_001037853	Q8N988	ZN557_HUMAN	zinc finger protein 557 isoform b	102	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2				Lung(535;0.179)		GAGAGGAATTCTCTCAGGTAC	0.458													13	21					2.27111e-07	2.38128e-07	1	1	0	
PEX11G	92960	broad.mit.edu	37	19	7550752	7550752	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:7550752T>C	uc002mgk.1	-	2	230	c.221A>G	c.(220-222)TAC>TGC	p.Y74C	PEX11G_uc002mgl.1_Missense_Mutation_p.Y4C	NM_080662	NP_542393	Q96HA9	PX11C_HUMAN	peroxisomal biogenesis factor 11 gamma	74	Cytoplasmic (Potential).					integral to membrane|peroxisomal membrane					0						TTGCTTAGTGTAGACAAACAT	0.527													36	87					0	0	1	0	0	
XAB2	56949	broad.mit.edu	37	19	7687232	7687232	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:7687232G>A	uc002mgx.2	-	12	1628	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	534	HAT 11.				transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						AGCTCTCCTCGAAGTACTTGT	0.547								Direct_reversal_of_damage|NER					60	121					0	0	1	0	0	
XAB2	56949	broad.mit.edu	37	19	7689248	7689248	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:7689248G>A	uc002mgx.2	-	7	932	c.906C>T	c.(904-906)TTC>TTT	p.F302F		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	302	HAT 8.				transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						TGCTCTCCTCGAACTGGGCGT	0.657								Direct_reversal_of_damage|NER					31	52					0	0	1	0	0	
XAB2	56949	broad.mit.edu	37	19	7693137	7693137	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:7693137G>T	uc002mgx.2	-	2	125	c.99C>A	c.(97-99)TTC>TTA	p.F33L	uc010dvi.1_5'Flank	NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	33	HAT 1.				transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						ATTTGACAGAGAATTGGTTCC	0.577								Direct_reversal_of_damage|NER					26	41					5.35047e-06	5.55034e-06	1	1	0	
CLEC4M	10332	broad.mit.edu	37	19	7831062	7831062	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:7831062T>G	uc002mih.2	+	5	802	c.684T>G	c.(682-684)TAT>TAG	p.Y228*	CLEC4M_uc010xjv.1_Nonsense_Mutation_p.Y223*|CLEC4M_uc002mhy.2_Nonsense_Mutation_p.Y195*|CLEC4M_uc010xjw.1_Intron|CLEC4M_uc010dvt.2_Nonsense_Mutation_p.Y205*|CLEC4M_uc010dvs.2_Nonsense_Mutation_p.Y227*|CLEC4M_uc010xjx.1_Nonsense_Mutation_p.Y200*|CLEC4M_uc002mhz.2_Intron|CLEC4M_uc002mic.2_Nonsense_Mutation_p.Y223*|CLEC4M_uc002mia.2_Intron	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	251	Extracellular (Probable).|7.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						AGCAAATCTATCAAGAACTGA	0.478													50	83					0	0	1	0	0	
TIMM44	10469	broad.mit.edu	37	19	7999114	7999114	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:7999114C>T	uc002miz.2	-	5	405	c.403G>A	c.(403-405)GAA>AAA	p.E135K	TIMM44_uc002mja.2_5'UTR|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	135					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						TTACTGACTTCGTGAAGGCTC	0.627													34	60					0	0	1	0	0	
FBN3	84467	broad.mit.edu	37	19	8161429	8161429	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:8161429G>A	uc002mjf.2	-	43	5459	c.5438C>T	c.(5437-5439)CCG>CTG	p.P1813L		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1813	EGF-like 28.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ACAGACATTCGGGATCTCCCG	0.577													14	27					0	0	1	0	0	
FBN3	84467	broad.mit.edu	37	19	8196634	8196634	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:8196634G>A	uc002mjf.2	-	14	1815	c.1794C>T	c.(1792-1794)TGC>TGT	p.C598C		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	598	EGF-like 7; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GCCCCCCCAGGCACTGGCAGC	0.682													20	24					0	0	1	0	0	
MYO1F	4542	broad.mit.edu	37	19	8612995	8612995	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:8612995G>A	uc002mkg.2	-	12	1308	c.1194C>T	c.(1192-1194)TTC>TTT	p.F398F	MYO1F_uc002mkh.2_Nonsense_Mutation_p.R400*	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	398	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						AAAACTGCTCGAAGCCATTTT	0.542													64	130					0	0	1	0	0	
OR2Z1	284383	broad.mit.edu	37	19	8841415	8841415	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:8841415G>A	uc010xkg.1	+	1	25	c.25G>A	c.(25-27)GCC>ACC	p.A9T		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						TCAGTCGGTGGCCTCAGACTT	0.478													28	45					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9010990	9010990	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9010990G>A	uc002mkp.2	-	37	39132	c.38928C>T	c.(38926-38928)AGC>AGT	p.S12976S	MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGCCACAGAGCTCCGATGGG	0.522													46	104					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9014190	9014190	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9014190T>G	uc002mkp.2	-	32	38662	c.38458A>C	c.(38458-38460)ACC>CCC	p.T12820P	MUC16_uc010xki.1_5'Flank	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12822	Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCGCAGAGGTCTGATGGGTG	0.532													28	55					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9024886	9024886	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9024886T>C	uc002mkp.2	-	16	37180	c.36976A>G	c.(36976-36978)ACC>GCC	p.T12326A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12328	SEA 2.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGTCATTGGTCAGTTTGCTT	0.557													69	137					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9028387	9028387	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9028387C>A	uc002mkp.2	-	11	36609	c.36405G>T	c.(36403-36405)AAG>AAT	p.K12135N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12137	SEA 1.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGAGCTATCCTTCTCTGGCC	0.532													46	88					1.00776e-21	1.1968e-21	1	1	0	
MUC16	94025	broad.mit.edu	37	19	9045784	9045784	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9045784C>A	uc002mkp.2	-	5	36051	c.35847G>T	c.(35845-35847)GAG>GAT	p.E11949D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11951	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTTGGCATCTCTGATGGTA	0.468													35	93					1.22384e-17	1.42067e-17	1	1	0	
MUC16	94025	broad.mit.edu	37	19	9046149	9046149	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9046149T>C	uc002mkp.2	-	5	35686	c.35482A>G	c.(35482-35484)ACT>GCT	p.T11828A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11830	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGTTCCAGTTACAAGTAGG	0.498													14	50					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9049699	9049699	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9049699G>T	uc002mkp.2	-	5	32136	c.31932C>A	c.(31930-31932)ATC>ATA	p.I10644I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10646	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACTAGGTGAGATATTTGTTG	0.473													33	68					2.68265e-12	2.96656e-12	1	1	0	
MUC16	94025	broad.mit.edu	37	19	9056340	9056340	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9056340C>T	uc002mkp.2	-	3	31310	c.31106G>A	c.(31105-31107)AGC>AAC	p.S10369N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10371	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTAGTGCTGCTCTCTGTCCC	0.483													41	83					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9056704	9056704	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9056704C>T	uc002mkp.2	-	3	30946	c.30742G>A	c.(30742-30744)GAA>AAA	p.E10248K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10250	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AACCTGGATTCTGGGAAGGAG	0.458													32	43					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9058293	9058293	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9058293G>T	uc002mkp.2	-	3	29357	c.29153C>A	c.(29152-29154)CCT>CAT	p.P9718H		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9720	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACAAAGCGAGGGCTCGTCCA	0.478													15	38					6.72482e-11	7.33162e-11	1	1	0	
MUC16	94025	broad.mit.edu	37	19	9062990	9062990	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9062990T>G	uc002mkp.2	-	3	24660	c.24456A>C	c.(24454-24456)GAA>GAC	p.E8152D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8154	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCTGGAGACTTCAGCAGTGG	0.542													45	80					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9067439	9067439	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9067439G>A	uc002mkp.2	-	3	20211	c.20007C>T	c.(20005-20007)ATC>ATT	p.I6669I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6671	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGTGGATACGATGGGGTCCT	0.512													37	101					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9068735	9068735	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9068735A>C	uc002mkp.2	-	3	18915	c.18711T>G	c.(18709-18711)ACT>ACG	p.T6237T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6239	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCAATGTGGAAGTTACAGGAG	0.483													39	58					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9068878	9068878	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9068878C>A	uc002mkp.2	-	3	18772	c.18568G>T	c.(18568-18570)GAT>TAT	p.D6190Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6192	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTACAAAATCCTGAGTTCTG	0.473													30	60					1.68575e-08	1.7923e-08	1	1	0	
MUC16	94025	broad.mit.edu	37	19	9069874	9069874	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9069874C>A	uc002mkp.2	-	3	17776	c.17572G>T	c.(17572-17574)GAA>TAA	p.E5858*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5860	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGGCCATTTCTGTGGATCCT	0.493													68	97					3.07281e-33	3.77625e-33	1	1	0	
MUC16	94025	broad.mit.edu	37	19	9070332	9070332	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9070332G>A	uc002mkp.2	-	3	17318	c.17114C>T	c.(17113-17115)GCG>GTG	p.A5705V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5707	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTGTGTGCGCAGTGTCTTT	0.502													31	66					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9084370	9084370	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9084370T>C	uc002mkp.2	-	1	7649	c.7445A>G	c.(7444-7446)GAC>GGC	p.D2482G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2482	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAGGCAGTGTCAGTGCTGAC	0.502											OREG0006611	type=TRANSCRIPTION FACTOR BINDING SITE|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	21	40					0	0	1	0	0	
MUC16	94025	broad.mit.edu	37	19	9086216	9086216	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9086216T>C	uc002mkp.2	-	1	5803	c.5599A>G	c.(5599-5601)ACT>GCT	p.T1867A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1867	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGACACCAGTATTCAATGAC	0.502													13	39					0	0	1	0	0	
OR7G1	125962	broad.mit.edu	37	19	9226198	9226198	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9226198A>G	uc002mks.1	-	1	242	c.242T>C	c.(241-243)ATC>ACC	p.I81T		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						GTTCACTAGGATCTTTGGGAC	0.463													56	167					0	0	1	0	0	
OR7G1	125962	broad.mit.edu	37	19	9226251	9226251	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9226251G>T	uc002mks.1	-	1	189	c.189C>A	c.(187-189)CTC>CTA	p.L63L		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						AGAGATTAAAGAGAAGGAAGT	0.483													71	139					2.02627e-32	2.48566e-32	1	1	0	
OR7D2	162998	broad.mit.edu	37	19	9296766	9296766	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9296766C>T	uc002mkz.1	+	1	497	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	103	Helical; Name=3; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						AGGTCTATTTCTCCATGTTTT	0.493													56	119					0	0	1	0	0	
OR7E24	26648	broad.mit.edu	37	19	9362082	9362082	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9362082T>G	uc002mlb.1	+	1	363	c.363T>G	c.(361-363)TTT>TTG	p.F121L		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	121	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGATGTCTTTTTTTGTCCTTT	0.493													14	49					0	0	1	0	0	
OR7E24	26648	broad.mit.edu	37	19	9362171	9362171	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9362171G>A	uc002mlb.1	+	1	452	c.452G>A	c.(451-453)CGA>CAA	p.R151Q		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	151	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTGCACTACCGAATCATCATG	0.438													19	23					0	0	1	0	0	
ZNF699	374879	broad.mit.edu	37	19	9406606	9406606	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9406606C>T	uc002mlc.1	-	5	1474	c.1474G>A	c.(1474-1476)GAA>AAA	p.E492K		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	492	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTAGGTGTTCGGTGAGGGAT	0.448													25	41					0	0	1	0	0	
ZNF699	374879	broad.mit.edu	37	19	9407394	9407394	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9407394C>A	uc002mlc.1	-	5	686	c.686G>T	c.(685-687)GGG>GTG	p.G229V		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	229	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAGGCCTTCCCACATTCCTT	0.453													60	129					6.20943e-19	7.27097e-19	1	1	0	
ZNF559	84527	broad.mit.edu	37	19	9452436	9452436	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9452436C>T	uc002mlg.2	+	7	956	c.309C>T	c.(307-309)CAC>CAT	p.H103H	ZNF559_uc002mlf.2_5'UTR|ZNF559_uc010dwl.1_5'UTR|ZNF559_uc010xkn.1_Silent_p.H95H|ZNF559_uc010dwm.1_3'UTR|ZNF559_uc002mle.3_Silent_p.H167H|ZNF559_uc010dwk.1_5'UTR|ZNF559_uc002mld.2_3'UTR|ZNF559_uc010dwo.1_Intron|ZNF177_uc002mli.2_Intron|ZNF177_uc002mlj.2_Intron	NM_032497	NP_115886	Q9BR84	ZN559_HUMAN	zinc finger protein 559	103	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGAGTGAACACTCATGCCTTA	0.363													29	61					0	0	1	0	0	
ZNF560	147741	broad.mit.edu	37	19	9577259	9577259	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9577259T>G	uc002mlp.1	-	10	2574	c.2364A>C	c.(2362-2364)AAA>AAC	p.K788N	ZNF560_uc010dwr.1_Missense_Mutation_p.K682N	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	788	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TCTAGTGTGTTTTCAAATGTG	0.398													39	79					0	0	1	0	0	
ZNF560	147741	broad.mit.edu	37	19	9577542	9577542	+	Missense_Mutation	SNP	C	T	T	rs148650284		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9577542C>T	uc002mlp.1	-	10	2291	c.2081G>A	c.(2080-2082)CGA>CAA	p.R694Q	ZNF560_uc010dwr.1_Missense_Mutation_p.R588Q	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	694					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CATGGAATTTCGAAAGGAATT	0.378													67	133					0	0	1	0	0	
ZNF560	147741	broad.mit.edu	37	19	9577768	9577768	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9577768A>C	uc002mlp.1	-	10	2065	c.1855T>G	c.(1855-1857)TTA>GTA	p.L619V	ZNF560_uc010dwr.1_Missense_Mutation_p.L513V	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	619	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TGTCTTCGTAAATGTTTAGTA	0.398													63	141					0	0	1	0	0	
ZNF121	7675	broad.mit.edu	37	19	9676675	9676675	+	Missense_Mutation	SNP	C	T	T	rs142394580	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9676675C>T	uc010xkp.1	-	4	1346	c.1114G>A	c.(1114-1116)GAA>AAA	p.E372K	ZNF121_uc010dwt.2_Missense_Mutation_p.E372K|ZNF121_uc010xkq.1_Missense_Mutation_p.E372K	NM_001008727	NP_001008727	P58317	ZN121_HUMAN	zinc finger protein 121	372	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTCCCACATTCGTTACATATA	0.338													14	38					0	0	1	0	0	
ZNF562	54811	broad.mit.edu	37	19	9764135	9764135	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9764135C>A	uc010xks.1	-	6	934	c.771G>T	c.(769-771)AAG>AAT	p.K257N	ZNF562_uc002mly.2_Missense_Mutation_p.K257N|ZNF562_uc002mlx.2_Missense_Mutation_p.K185N|ZNF562_uc010xkt.1_Missense_Mutation_p.K220N|ZNF562_uc010xku.1_Missense_Mutation_p.K188N|ZNF562_uc010xkv.1_Missense_Mutation_p.K256N|ZNF562_uc010xkw.1_Missense_Mutation_p.K141N	NM_001130032	NP_001123504	Q6V9R5	ZN562_HUMAN	zinc finger protein 562 isoform a	257					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTTCGGATTTCTTTCCAGTAT	0.388													32	62					3.90053e-15	4.43362e-15	1	1	0	
ZNF846	162993	broad.mit.edu	37	19	9868330	9868330	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9868330C>A	uc002mmb.1	-	6	1954	c.1423G>T	c.(1423-1425)GAA>TAA	p.E475*	ZNF846_uc010xky.1_Intron|ZNF846_uc010xkz.1_Intron|ZNF846_uc010dww.2_Intron|ZNF846_uc002mmc.1_Nonsense_Mutation_p.E346*	NM_001077624	NP_001071092	Q147U1	ZN846_HUMAN	zinc finger protein 846	475					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TAAGGCTTTTCTCCTGTGTGC	0.428													44	82					1.41504e-22	1.68905e-22	1	1	0	
ZNF846	162993	broad.mit.edu	37	19	9869139	9869139	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:9869139C>A	uc002mmb.1	-	6	1145	c.614G>T	c.(613-615)AGA>ATA	p.R205I	ZNF846_uc010xky.1_RNA|ZNF846_uc010xkz.1_RNA|ZNF846_uc010dww.2_Missense_Mutation_p.R76I|ZNF846_uc002mmc.1_Missense_Mutation_p.R76I	NM_001077624	NP_001071092	Q147U1	ZN846_HUMAN	zinc finger protein 846	205	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGAAAAGTTCTCCAACAGTC	0.358													7	103					8.12818e-05	8.32951e-05	1	1	0	
COL5A3	50509	broad.mit.edu	37	19	10071116	10071116	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:10071116C>A	uc002mmq.1	-	67	5295	c.5209G>T	c.(5209-5211)GAA>TAA	p.E1737*		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1737	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGGCCCAGTTCAAACCCAAAC	0.577													25	59					5.35356e-11	5.83973e-11	1	1	0	
RDH8	50700	broad.mit.edu	37	19	10127761	10127761	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:10127761G>T	uc002mmr.2	+	2	381	c.132G>T	c.(130-132)AAG>AAT	p.K44N		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	44					estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	ACCTGGGGAAGAAGGAGACAC	0.642													7	17					1.06961e-07	1.12684e-07	1	1	0	
DNMT1	1786	broad.mit.edu	37	19	10259675	10259675	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:10259675A>G	uc002mng.2	-	26	2737	c.2557T>C	c.(2557-2559)TCC>CCC	p.S853P	DNMT1_uc010xlc.1_Missense_Mutation_p.S869P|DNMT1_uc002mnh.2_Missense_Mutation_p.S748P|DNMT1_uc010xld.1_Missense_Mutation_p.S853P	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	853	BAH 1.				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	TCCAGCAGGGACTCGGGATCC	0.393													20	37					0	0	1	0	0	
DNMT1	1786	broad.mit.edu	37	19	10267136	10267136	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:10267136C>T	uc002mng.2	-	17	1462	c.1282G>A	c.(1282-1284)GAG>AAG	p.E428K	DNMT1_uc010xlc.1_Missense_Mutation_p.E444K|DNMT1_uc002mnh.2_Missense_Mutation_p.E323K|DNMT1_uc010xld.1_Missense_Mutation_p.E428K	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	428	DNA replication foci-targeting sequence (By similarity).|Homodimerization.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	ATATTCTTCTCGATGAGGCCG	0.483													25	66					0	0	1	0	0	
PDE4A	5141	broad.mit.edu	37	19	10561292	10561292	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:10561292G>A	uc002moj.2	+	5	742	c.634G>A	c.(634-636)GGC>AGC	p.G212S	PDE4A_uc002mok.2_Missense_Mutation_p.G186S|PDE4A_uc002mol.2_Missense_Mutation_p.G151S|PDE4A_uc002mom.2_5'Flank|PDE4A_uc002mon.2_5'Flank	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	212					signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	GTCCCCGCTGGGCGGCCCCAC	0.652													6	10					0	0	1	0	0	
KEAP1	9817	broad.mit.edu	37	19	10610561	10610561	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:10610561C>T	uc002moq.1	-	2	305	c.149G>A	c.(148-150)CGC>CAC	p.R50H	KEAP1_uc002mor.1_Missense_Mutation_p.R50H	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	50					regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			GCTGAAGGTGCGGTTGCCATG	0.632													66	103					0	0	1	0	0	
DNM2	1785	broad.mit.edu	37	19	10886518	10886518	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:10886518G>A	uc002mps.1	+	4	689	c.525G>A	c.(523-525)ACG>ACA	p.T175T	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Silent_p.T175T|DNM2_uc002mpv.1_Silent_p.T175T|DNM2_uc002mpu.1_Silent_p.T175T|DNM2_uc010dxl.1_Silent_p.T175T	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	175					G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			TGGCTGTCACGCCCGCCAACA	0.607													50	95					0	0	1	0	0	
DNM2	1785	broad.mit.edu	37	19	10908128	10908128	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:10908128G>A	uc002mps.1	+	10	1433	c.1269G>A	c.(1267-1269)CCG>CCA	p.P423P	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Intron|DNM2_uc002mpv.1_Silent_p.P423P|DNM2_uc002mpu.1_Intron|DNM2_uc010dxl.1_Intron|DNM2_uc002mpw.2_Silent_p.P156P	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	423					G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			TCAAAGAGCCGAGTTTGAAGT	0.507													21	46					0	0	1	0	0	
DOCK6	57572	broad.mit.edu	37	19	11352862	11352862	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11352862G>T	uc002mqs.3	-	14	1543	c.1502C>A	c.(1501-1503)TCT>TAT	p.S501Y		NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	501					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						AGGAGCCGGAGAAATGTCGAT	0.612													6	10					0.0215528	0.0216931	1	1	0	
RGL3	57139	broad.mit.edu	37	19	11516087	11516087	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11516087G>A	uc002mrp.2	-	8	1076	c.1012C>T	c.(1012-1014)CGG>TGG	p.R338W	RGL3_uc002mrn.2_Missense_Mutation_p.R102W|RGL3_uc002mrm.2_Missense_Mutation_p.R102W|RGL3_uc002mro.2_Missense_Mutation_p.R338W	NM_001035223	NP_001030300	Q3MIN7	RGL3_HUMAN	ral guanine nucleotide dissociation	338	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular				ovary(1)	1						GAGAAGTTCCGCAGTTCTCGG	0.567													4	13					0	0	1	0	0	
ZNF627	199692	broad.mit.edu	37	19	11728369	11728369	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11728369C>T	uc002msk.2	+	4	1259	c.1051C>T	c.(1051-1053)CGA>TGA	p.R351*	ZNF627_uc010dyf.2_Nonsense_Mutation_p.R241*	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	351	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CAGTTCATTTCGAATCCATGA	0.413													23	47					0	0	1	0	0	
ZNF627	199692	broad.mit.edu	37	19	11728453	11728453	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11728453C>T	uc002msk.2	+	4	1343	c.1135C>T	c.(1135-1137)CGA>TGA	p.R379*	ZNF627_uc010dyf.2_Nonsense_Mutation_p.R269*	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	379	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CAGTTCGTTTCGAAAACATGA	0.418													25	54					0	0	1	0	0	
ZNF833	401898	broad.mit.edu	37	19	11796214	11796214	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11796214G>T	uc010dyg.2	+	3	835	c.173G>T	c.(172-174)AGA>ATA	p.R58I	ZNF833_uc002msl.3_RNA	NM_001013691	NP_001013713			zinc finger protein 833												0						AAACATGCAAGAATTCACACT	0.373													27	41					2.50493e-22	2.98478e-22	1	1	0	
ZNF833	401898	broad.mit.edu	37	19	11796286	11796286	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11796286G>A	uc010dyg.2	+	3	907	c.245G>A	c.(244-246)CGA>CAA	p.R82Q	ZNF833_uc002msl.3_RNA	NM_001013691	NP_001013713			zinc finger protein 833												0						AGTTCTATTCGAAATCATGAA	0.363													16	20					0	0	1	0	0	
ZNF441	126068	broad.mit.edu	37	19	11891955	11891955	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11891955G>T	uc010dyj.2	+	4	1510	c.1316G>T	c.(1315-1317)AGA>ATA	p.R439I	ZNF441_uc002msn.3_Missense_Mutation_p.R395I	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	439	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATACATGAAAGAATTCACACT	0.378													26	43					1.1804e-14	1.33524e-14	1	1	0	
ZNF441	126068	broad.mit.edu	37	19	11891986	11891986	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11891986T>C	uc010dyj.2	+	4	1541	c.1347T>C	c.(1345-1347)TGT>TGC	p.C449C	ZNF441_uc002msn.3_Silent_p.C405C	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	449	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCTATAAATGTAAACAATGCG	0.383													28	57					0	0	1	0	0	
ZNF441	126068	broad.mit.edu	37	19	11892539	11892539	+	Missense_Mutation	SNP	G	A	A	rs77835227	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11892539G>A	uc010dyj.2	+	4	2094	c.1900G>A	c.(1900-1902)GAA>AAA	p.E634K	ZNF441_uc002msn.3_Missense_Mutation_p.E590K	NM_152355	NP_689568	Q8N8Z8	ZN441_HUMAN	zinc finger protein 441	634	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACGAATACACGAAAGAGTTCA	0.408													23	47					0	0	1	0	0	
ZNF491	126069	broad.mit.edu	37	19	11916972	11916972	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11916972G>A	uc002mso.1	+	3	489	c.204G>A	c.(202-204)CAG>CAA	p.Q68Q		NM_152356	NP_689569	Q8N8L2	ZN491_HUMAN	zinc finger protein 491	68					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ATAAGTGTCAGAAATTTTTAG	0.398													30	61					0	0	1	0	0	
ZNF491	126069	broad.mit.edu	37	19	11917544	11917544	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11917544G>A	uc002mso.1	+	3	1061	c.776G>A	c.(775-777)CGA>CAA	p.R259Q		NM_152356	NP_689569	Q8N8L2	ZN491_HUMAN	zinc finger protein 491	259	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ATAAGCTTTCGAAGACACATG	0.408													29	66					0	0	1	0	0	
ZNF440	126070	broad.mit.edu	37	19	11942676	11942676	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11942676G>A	uc002msp.1	+	4	841	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_152357	NP_689570	Q8IYI8	ZN440_HUMAN	zinc finger protein 440	229	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAACCATGTGAATGTAAACA	0.373													40	73					0	0	1	0	0	
ZNF439	90594	broad.mit.edu	37	19	11976850	11976850	+	Translation_Start_Site	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11976850T>A	uc002mss.2	+	1	7	c.-121T>A	c.(-123--119)AATTG>AAATG		ZNF439_uc002msr.2_Intron	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						aaaaaaaaaaTTGCTTTATGG	0.209													4	18					0	0	1	0	0	
ZNF439	90594	broad.mit.edu	37	19	11978700	11978700	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:11978700T>C	uc002mss.2	+	3	944	c.816T>C	c.(814-816)TGT>TGC	p.C272C	ZNF439_uc002msr.2_Silent_p.C136C	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	272	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTTATGAATGTCAGGAATGTG	0.393													35	71					0	0	1	0	0	
ZNF700	90592	broad.mit.edu	37	19	12060493	12060493	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12060493C>T	uc002msu.2	+	4	1780	c.1654C>T	c.(1654-1656)CGA>TGA	p.R552*	ZNF700_uc010xme.1_Nonsense_Mutation_p.R570*|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	552	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAATTCCCTTCGATATCATGA	0.433													37	68					0	0	1	0	0	
ZNF433	163059	broad.mit.edu	37	19	12125892	12125892	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12125892T>G	uc002msy.1	-	4	1961	c.1790A>C	c.(1789-1791)AAG>ACG	p.K597T	uc002msx.1_Intron|ZNF433_uc002msz.1_Missense_Mutation_p.K562T	NM_001080411	NP_001073880	Q8N7K0	ZN433_HUMAN	zinc finger protein 433	597	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCCAAAAGACTTCCCACACTG	0.468													39	71					0	0	1	0	0	
ZNF878	729747	broad.mit.edu	37	19	12155208	12155208	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12155208C>A	uc002mta.1	-	5	1149	c.1149G>T	c.(1147-1149)GAG>GAT	p.E383D		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	336					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						CATAAGGTTTCTCTCCAGTGT	0.388													28	68					9.39395e-14	1.05303e-13	1	1	0	
ZNF878	729747	broad.mit.edu	37	19	12155980	12155980	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12155980T>G	uc002mta.1	-	5	377	c.377A>C	c.(376-378)CAG>CCG	p.Q126P		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	79	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TTCTCCATGCTGATGACTTTC	0.383													6	16					0	0	1	0	0	
ZNF844	284391	broad.mit.edu	37	19	12187077	12187077	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12187077A>G	uc002mtb.2	+	4	1285	c.1142A>G	c.(1141-1143)GAC>GGC	p.D381G	ZNF844_uc010dym.1_Missense_Mutation_p.D224G	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	381					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGTTTTGAAGACATGAAAGAA	0.383													5	12					0	0	1	0	0	
ZNF20	7568	broad.mit.edu	37	19	12243483	12243483	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12243483A>C	uc002mtf.1	-	4	1661	c.1518T>G	c.(1516-1518)TAT>TAG	p.Y506*	ZNF20_uc002mte.1_Nonsense_Mutation_p.Y471*|ZNF20_uc002mtg.1_Nonsense_Mutation_p.Y506*	NM_021143	NP_066966	P17024	ZNF20_HUMAN	zinc finger protein 20	506	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCTTGCATTGATAGGGTTTCT	0.398													28	198					0	0	1	0	0	
ZNF625	90589	broad.mit.edu	37	19	12256532	12256532	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12256532G>A	uc002mth.2	-	4	851	c.501C>T	c.(499-501)AGC>AGT	p.S167S	ZNF20_uc002mtg.1_Intron|ZNF625_uc010dyn.1_RNA|ZNF625_uc010dyo.1_Silent_p.S201S	NM_145233	NP_660276	Q96I27	ZN625_HUMAN	zinc finger protein 625	167	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTATTCGAAGGCTACCAGAAT	0.413													41	80					0	0	1	0	0	
ZNF44	51710	broad.mit.edu	37	19	12384420	12384420	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12384420C>A	uc010xmj.1	-	5	999	c.794G>T	c.(793-795)AGA>ATA	p.R265I	ZNF44_uc002mtl.2_Intron|ZNF44_uc010dyr.1_Intron|ZNF44_uc010xmi.1_RNA|ZNF44_uc002mtn.3_RNA|ZNF44_uc010dys.2_Missense_Mutation_p.R217I	NM_001164276	NP_001157748	P15621	ZNF44_HUMAN	zinc finger protein 44 isoform 1	265	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1		Renal(1328;0.157)		GBM - Glioblastoma multiforme(1328;0.0164)|Lung(535;0.179)		AGTGTGAGTTCTTTCATGCAT	0.393													54	121					5.13769e-22	6.11477e-22	1	1	0	
ZNF799	90576	broad.mit.edu	37	19	12491521	12491521	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12491521A>G	uc002mts.3	-	4	1021	c.555T>C	c.(553-555)AGT>AGC	p.S185S				Q96GE5	ZN799_HUMAN	Homo sapiens cDNA clone IMAGE:30340957, **** WARNING: chimeric clone ****.	291	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						AAGTGGAAGCACTGAAGGCTT	0.433													46	86					0	0	1	0	0	
ZNF799	90576	broad.mit.edu	37	19	12491744	12491744	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12491744C>A	uc002mts.3	-	4	798	c.332G>T	c.(331-333)AGA>ATA	p.R111I				Q96GE5	ZN799_HUMAN	Homo sapiens cDNA clone IMAGE:30340957, **** WARNING: chimeric clone ****.	217	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						AGAGTGAGTTCTTTCATGCAT	0.393													48	81					3.77016e-25	4.54193e-25	1	1	0	
ZNF799	90576	broad.mit.edu	37	19	12502322	12502322	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12502322C>T	uc010dyt.2	-	4	1040	c.890G>A	c.(889-891)CGA>CAA	p.R297Q	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	297	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCGTGTCTTCGAAGGGAAGT	0.423													67	122					0	0	1	0	0	
ZNF709	163051	broad.mit.edu	37	19	12575681	12575681	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12575681C>T	uc002mtv.3	-	4	1216	c.1055G>A	c.(1054-1056)CGA>CAA	p.R352Q	ZNF709_uc002mtw.3_Missense_Mutation_p.R320Q|ZNF709_uc002mtx.3_Missense_Mutation_p.R352Q	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	352	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CATATGTCTTCGATAGCTTGG	0.368													56	110					0	0	1	0	0	
ZNF564	163050	broad.mit.edu	37	19	12637684	12637684	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12637684C>A	uc002mty.2	-	4	1448	c.1238G>T	c.(1237-1239)AGA>ATA	p.R413I	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	413	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGTGTGAGTTCTTTCGTGTAT	0.408													78	145					8.07507e-42	1.00138e-41	1	1	0	
ZNF490	57474	broad.mit.edu	37	19	12691588	12691588	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12691588C>T	uc002mtz.2	-	5	1430	c.1301G>A	c.(1300-1302)CGA>CAA	p.R434Q		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	434	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCATGGATTCGAAAGTGAGT	0.413													47	83					0	0	1	0	0	
ZNF490	57474	broad.mit.edu	37	19	12692305	12692305	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:12692305T>G	uc002mtz.2	-	5	713	c.584A>C	c.(583-585)AAA>ACA	p.K195T		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	195	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCTTTGCATTTATGTGGCTT	0.443													42	86					0	0	1	0	0	
RAD23A	5886	broad.mit.edu	37	19	13060204	13060204	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:13060204G>T	uc002mvw.1	+	7	904	c.795G>T	c.(793-795)GAG>GAT	p.E265D	RAD23A_uc002mvx.1_Missense_Mutation_p.E264D|RAD23A_uc002mvz.1_Missense_Mutation_p.E264D|RAD23A_uc002mwa.1_Missense_Mutation_p.E265D|RAD23A_uc002mvy.1_Missense_Mutation_p.E99D|RAD23A_uc010xmw.1_Missense_Mutation_p.E100D	NM_005053	NP_005044	P54725	RD23A_HUMAN	UV excision repair protein RAD23 homolog A	265					interspecies interaction between organisms|nucleotide-excision repair|positive regulation of viral genome replication|proteasomal ubiquitin-dependent protein catabolic process|regulation of proteasomal ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	damaged DNA binding|polyubiquitin binding|single-stranded DNA binding			central_nervous_system(1)	1						TGGGCCAGGAGAACCCTCAGC	0.612								NER					24	63					1.9806e-07	2.07987e-07	1	1	0	
TRMT1	55621	broad.mit.edu	37	19	13221113	13221113	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:13221113C>A	uc002mwj.2	-	7	1128	c.878G>T	c.(877-879)AGA>ATA	p.R293I	TRMT1_uc010xmy.1_5'Flank|TRMT1_uc002mwk.2_Missense_Mutation_p.R293I|TRMT1_uc002mwl.3_Missense_Mutation_p.R293I|TRMT1_uc010xmz.1_Missense_Mutation_p.R79I	NM_017722	NP_060192	Q9NXH9	TRM1_HUMAN	tRNA methyltransferase 1 isoform 1	293							RNA binding|tRNA (guanine-N2-)-methyltransferase activity|zinc ion binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.08e-22)	GBM - Glioblastoma multiforme(1328;0.0356)		CAGGACGATTCTCAGGGCCTG	0.552													5	12					0.0215528	0.0216931	1	1	0	
CACNA1A	773	broad.mit.edu	37	19	13372361	13372361	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:13372361G>A	uc010dze.2	-	26	4392	c.4156C>T	c.(4156-4158)CTA>TTA	p.L1386L	CACNA1A_uc010xnd.1_Silent_p.L91L|CACNA1A_uc002mwx.3_Silent_p.L91L|CACNA1A_uc010dzc.2_Silent_p.L911L|CACNA1A_uc002mwy.3_Silent_p.L1385L|CACNA1A_uc010xne.1_Silent_p.L914L	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1386	III.|Helical; Name=S5 of repeat III; (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	AACATGAATAGCATGTAGACG	0.493													11	5					0	0	1	0	0	
CACNA1A	773	broad.mit.edu	37	19	13373570	13373570	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:13373570A>G	uc010dze.2	-	25	4306	c.4070T>C	c.(4069-4071)ATC>ACC	p.I1357T	CACNA1A_uc010xnd.1_Missense_Mutation_p.I62T|CACNA1A_uc002mwx.3_Missense_Mutation_p.I62T|CACNA1A_uc010dzc.2_Missense_Mutation_p.I882T|CACNA1A_uc002mwy.3_Missense_Mutation_p.I1356T|CACNA1A_uc010xne.1_Missense_Mutation_p.I885T	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1357	III.|Helical; Name=S4 of repeat III; (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CAGCCGCTTGATGGTTTTAAG	0.433											OREG0025294	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	20					0	0	1	0	0	
CACNA1A	773	broad.mit.edu	37	19	13409910	13409910	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:13409910T>C	uc010dze.2	-	19	2776	c.2540A>G	c.(2539-2541)GAC>GGC	p.D847G	CACNA1A_uc010dzc.2_Missense_Mutation_p.D372G|CACNA1A_uc002mwy.3_Missense_Mutation_p.D846G|CACNA1A_uc010xne.1_Missense_Mutation_p.D375G	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	847	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GAGGCGCTGGTCCACGGTGGG	0.701													13	20					0	0	1	0	0	
CACNA1A	773	broad.mit.edu	37	19	13470614	13470614	+	Splice_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:13470614C>A	uc010dze.2	-	6	1021	c.785_splice	c.e6-1	p.D262_splice	CACNA1A_uc002mwy.3_Splice_Site_p.D262_splice	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3						cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TGAATGTCATCTACAAAAGGG	0.537													4	0					1	1	1	1	0	
ZSWIM4	65249	broad.mit.edu	37	19	13928150	13928150	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:13928150C>A	uc002mxh.1	+	7	1490	c.1301C>A	c.(1300-1302)ACA>AAA	p.T434K	ZSWIM4_uc010xng.1_Missense_Mutation_p.T357K	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	434							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			GAGGAGGAGACACTTACCCTT	0.632													31	60					2.85442e-18	3.33381e-18	1	1	0	
LPHN1	22859	broad.mit.edu	37	19	14267940	14267940	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:14267940G>A	uc010xnn.1	-	16	3074	c.2778C>T	c.(2776-2778)TTC>TTT	p.F926F	LPHN1_uc010xno.1_Silent_p.F921F|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	926	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						GCAGGCCGGCGAAGATGGGGC	0.647													14	34					0	0	1	0	0	
EMR3	84658	broad.mit.edu	37	19	14765862	14765862	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:14765862G>A	uc002mzi.3	-	6	657	c.509C>T	c.(508-510)TCG>TTG	p.S170L	EMR3_uc010dzp.2_Missense_Mutation_p.S118L|EMR3_uc010xnv.1_Intron	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	170	Extracellular (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						TAGAACTTTCGATTCCACATC	0.413													32	78					0	0	1	0	0	
ZNF333	84449	broad.mit.edu	37	19	14829800	14829800	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:14829800G>A	uc002mzn.2	+	12	1795	c.1661G>A	c.(1660-1662)CGA>CAA	p.R554Q	ZNF333_uc002mzk.3_Missense_Mutation_p.R445Q	NM_032433	NP_115809	Q96JL9	ZN333_HUMAN	zinc finger protein 333	554	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGTCACATGCGAACTCACACT	0.537													29	44					0	0	1	0	0	
OR7A10	390892	broad.mit.edu	37	19	14951778	14951778	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:14951778G>T	uc002mzx.1	-	1	912	c.912C>A	c.(910-912)TTC>TTA	p.F304L		NM_001005190	NP_001005190	O76100	OR7AA_HUMAN	olfactory receptor, family 7, subfamily A,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					TTCCTCTGAAGAATGTTTTCA	0.443													15	51					1.5739e-10	1.71181e-10	1	1	0	
SLC1A6	6511	broad.mit.edu	37	19	15063790	15063790	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15063790G>A	uc002naa.1	-	8	1457	c.1449C>T	c.(1447-1449)GTC>GTT	p.V483V	SLC1A6_uc010dzu.1_Silent_p.V405V|SLC1A6_uc010xod.1_Silent_p.V419V	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	483	Helical; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	TGGGCAAGCCGACCGACGTAA	0.572													55	90					0	0	1	0	0	
SLC1A6	6511	broad.mit.edu	37	19	15083562	15083562	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15083562C>T	uc002naa.1	-	1	169	c.161G>A	c.(160-162)CGC>CAC	p.R54H	SLC1A6_uc010dzu.1_Missense_Mutation_p.R54H|SLC1A6_uc010xod.1_Silent_p.A58A|SLC1A6_uc002nab.2_Missense_Mutation_p.R54H|SLC1A6_uc002nac.2_Missense_Mutation_p.R54H|SLC1A6_uc002nad.1_Missense_Mutation_p.R54H	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	54	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	GGCGTTTCGGCGCAGGAAGCG	0.657													13	27					0	0	1	0	0	
CCDC105	126402	broad.mit.edu	37	19	15132651	15132651	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15132651G>T	uc002nae.2	+	6	1270	c.1171G>T	c.(1171-1173)GAA>TAA	p.E391*		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	391					microtubule cytoskeleton organization	microtubule				ovary(1)	1						GGAGACCGCAGAAAAGCTGGA	0.647													30	70					2.81731e-10	3.05284e-10	1	1	0	
CASP14	23581	broad.mit.edu	37	19	15164409	15164409	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15164409C>T	uc010dzv.1	+	3	452	c.144C>T	c.(142-144)TTC>TTT	p.F48F	CASP14_uc002naf.2_Silent_p.F48F	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	48					apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						AGCTGAGATTCGAAAGCACCA	0.557													47	85					0	0	1	0	0	
OR1I1	126370	broad.mit.edu	37	19	15198197	15198197	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15198197C>T	uc010xoe.1	+	1	321	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						TCCACCTGTTCGGGACCATGG	0.582													14	48					0	0	1	0	0	
ILVBL	10994	broad.mit.edu	37	19	15226687	15226687	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15226687C>T	uc002nam.2	-	14	1709	c.1588G>A	c.(1588-1590)GAA>AAA	p.E530K	ILVBL_uc010xof.1_Missense_Mutation_p.E171K|ILVBL_uc010dzw.2_Missense_Mutation_p.E423K	NM_006844	NP_006835	A1L0T0	ILVBL_HUMAN	ilvB (bacterial acetolactate synthase)-like	530	Thiamine pyrophosphate binding (By similarity).					integral to membrane	magnesium ion binding|thiamine pyrophosphate binding|transferase activity			ovary(2)	2						GTATCAAATTCGATGAGGCTG	0.587													14	65					0	0	1	0	0	
AKAP8L	26993	broad.mit.edu	37	19	15510111	15510111	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15510111A>G	uc002naw.1	-	9	1256	c.1157_splice	c.e9+1	p.R386_splice	AKAP8L_uc002nax.1_Splice_Site|AKAP8L_uc010xoh.1_Splice_Site_p.R325_splice	NM_014371	NP_055186	Q9ULX6	AKP8L_HUMAN	A kinase (PRKA) anchor protein 8-like							cytoplasm|nuclear matrix	DEAD/H-box RNA helicase binding|DNA binding|zinc ion binding			ovary(1)	1						GAAGCTGGTTACCTTTCCACC	0.627													10	37					0	0	1	0	0	
CYP4F22	126410	broad.mit.edu	37	19	15658949	15658949	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15658949T>G	uc002nbh.3	+	11	1334	c.1167T>G	c.(1165-1167)ACT>ACG	p.T389T		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	389						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						CCTTTACAACTATGTGCATTA	0.522													14	171					0	0	1	0	0	
CYP4F3	4051	broad.mit.edu	37	19	15758136	15758136	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15758136T>C	uc002nbj.2	+	5	575	c.525_splice	c.e5+2	p.H175_splice	CYP4F3_uc010xok.1_Splice_Site_p.H175_splice|CYP4F3_uc010xol.1_Splice_Site_p.H175_splice|CYP4F3_uc010xom.1_Splice_Site_p.H26_splice|CYP4F3_uc002nbk.2_Splice_Site_p.H175_splice|CYP4F3_uc010xon.1_5'Flank	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,						leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						ATCATGCATGTGAGTTATTTG	0.383													43	104					0	0	1	0	0	
OR10H2	26538	broad.mit.edu	37	19	15839024	15839024	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15839024G>A	uc002nbm.2	+	1	191	c.171G>A	c.(169-171)ACG>ACA	p.T57T		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					GCCTCCACACGCCCATGTACC	0.612													59	100					0	0	1	0	0	
OR10H5	284433	broad.mit.edu	37	19	15905629	15905629	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15905629C>T	uc010xos.1	+	1	771	c.771C>T	c.(769-771)TCC>TCT	p.S257S		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCTTTGCCTCCGTCATTTACC	0.567													25	44					0	0	1	0	0	
CYP4F2	8529	broad.mit.edu	37	19	15990222	15990222	+	Missense_Mutation	SNP	C	T	T	rs138971789		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:15990222C>T	uc002nbs.1	-	12	1381	c.1331G>A	c.(1330-1332)CGC>CAC	p.R444H	CYP4F2_uc010xot.1_Missense_Mutation_p.R295H	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	444					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						TGGGTCAAAGCGAAAGGGGTC	0.577													67	144					0	0	1	0	0	
CYP4F11	57834	broad.mit.edu	37	19	16045053	16045053	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:16045053T>C	uc002nbu.2	-	2	202	c.166A>G	c.(166-168)AAA>GAA	p.K56E	CYP4F11_uc010eab.1_Missense_Mutation_p.K56E|CYP4F11_uc002nbt.2_Missense_Mutation_p.K56E	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	56					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CAGTTCTGTTTCGGGGGTTGA	0.617													36	52					0	0	1	0	0	
RAB8A	4218	broad.mit.edu	37	19	16240385	16240385	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:16240385G>T	uc002ndn.3	+	7	724	c.502G>T	c.(502-504)GAT>TAT	p.D168Y	RAB8A_uc010xpc.1_Missense_Mutation_p.R161I|RAB8A_uc002ndo.3_Missense_Mutation_p.R46I	NM_005370	NP_005361	P61006	RAB8A_HUMAN	mel transforming oncogene	168					cilium assembly|Golgi vesicle fusion to target membrane|protein transport|small GTPase mediated signal transduction|vesicle docking involved in exocytosis	Golgi apparatus|nonmotile primary cilium|perinuclear region of cytoplasm|plasma membrane	GTP binding|protein binding			skin(1)	1						TCTCGCCAGAGATATCAAAGC	0.527													70	146					4.14589e-37	5.12652e-37	1	1	0	
EPS15L1	58513	broad.mit.edu	37	19	16514555	16514555	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:16514555C>T	uc002ndz.1	-	15	1621	c.1615G>A	c.(1615-1617)GAA>AAA	p.E539K	EPS15L1_uc002ndx.2_Missense_Mutation_p.E539K|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Missense_Mutation_p.E429K|EPS15L1_uc010xpf.1_Missense_Mutation_p.E442K|EPS15L1_uc002nea.1_Missense_Mutation_p.E539K|EPS15L1_uc010eah.1_Missense_Mutation_p.E539K|EPS15L1_uc002neb.1_Missense_Mutation_p.E385K|EPS15L1_uc002nec.1_Missense_Mutation_p.E539K	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	539					endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						TGGTTGATTTCGTCTTGCGTT	0.582													38	88					0	0	1	0	0	
CALR3	125972	broad.mit.edu	37	19	16594840	16594840	+	Silent	SNP	G	A	A	rs149108772		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:16594840G>A	uc002ned.2	-	5	642	c.579C>T	c.(577-579)TCC>TCT	p.S193S	MED26_uc002nee.2_Intron	NM_145046	NP_659483	Q96L12	CALR3_HUMAN	calreticulin 3 precursor	193	4 X approximate repeats.|N-domain.|1-1.				protein folding	endoplasmic reticulum lumen	calcium ion binding|sugar binding|unfolded protein binding				0						CTATGCTGCCGGATTCAATTG	0.428													13	31					0	0	1	0	0	
CALR3	125972	broad.mit.edu	37	19	16601326	16601326	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:16601326C>T	uc002ned.2	-	3	312	c.249G>A	c.(247-249)CCG>CCA	p.P83P	MED26_uc002nee.2_Intron	NM_145046	NP_659483	Q96L12	CALR3_HUMAN	calreticulin 3 precursor	83	N-domain.				protein folding	endoplasmic reticulum lumen	calcium ion binding|sugar binding|unfolded protein binding				0						TATTGCTGAACGGTTTGAAGC	0.453													43	81					0	0	1	0	0	
CPAMD8	27151	broad.mit.edu	37	19	17010303	17010303	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17010303G>A	uc002nfb.2	-	37	5004	c.4972C>T	c.(4972-4974)CTC>TTC	p.L1658F	CPAMD8_uc010xpj.1_5'Flank|CPAMD8_uc002nfd.1_Missense_Mutation_p.L123F	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1611						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						AAGTAGAAGAGCACTCGGCGT	0.577													9	33					0	0	1	0	0	
CPAMD8	27151	broad.mit.edu	37	19	17091335	17091335	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17091335C>T	uc002nfb.2	-	14	1730	c.1698G>A	c.(1696-1698)CCG>CCA	p.P566P		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	519						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TTAAACGAATCGGTTTCTCCA	0.592													34	53					0	0	1	0	0	
CPAMD8	27151	broad.mit.edu	37	19	17091474	17091474	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17091474G>T	uc002nfb.2	-	14	1591	c.1559C>A	c.(1558-1560)TCT>TAT	p.S520Y		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	473						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GGACTTCACAGAAAAATAGGC	0.572													25	47					0.00395357	0.00399947	1	1	0	
CPAMD8	27151	broad.mit.edu	37	19	17119328	17119328	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17119328C>T	uc002nfb.2	-	7	719	c.687G>A	c.(685-687)AAG>AAA	p.K229K		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	182						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						AGCAGAACGGCTTTAAGTGTC	0.562													19	38					0	0	1	0	0	
MYO9B	4650	broad.mit.edu	37	19	17298844	17298844	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17298844A>G	uc010eak.2	+	19	2830	c.2678A>G	c.(2677-2679)TAC>TGC	p.Y893C	MYO9B_uc002nfi.2_Missense_Mutation_p.Y893C|MYO9B_uc002nfj.1_Missense_Mutation_p.Y893C	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	893	Myosin head-like.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						AGCGCCAAGTACACGTTCCAG	0.567													3	2					0	0	1	0	0	
MYO9B	4650	broad.mit.edu	37	19	17308628	17308628	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17308628C>T	uc010eak.2	+	23	4226	c.4074C>T	c.(4072-4074)AGC>AGT	p.S1358S	MYO9B_uc002nfi.2_Silent_p.S1358S|MYO9B_uc002nfj.1_Silent_p.S1358S|MYO9B_uc002nfl.1_5'Flank	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	1358	Tail.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						TCTCCACGAGCGACGTCTCCA	0.388													24	65					0	0	1	0	0	
FAM129C	199786	broad.mit.edu	37	19	17641676	17641676	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17641676C>T	uc010xpr.1	+	3	399	c.261C>T	c.(259-261)AGC>AGT	p.S87S	FAM129C_uc010xpq.1_Silent_p.S87S|FAM129C_uc010xps.1_Silent_p.S56S|FAM129C_uc010xpt.1_Intron	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	87											0						CGACCGGAAGCCAGTTGCTAC	0.632													14	30					0	0	1	0	0	
FAM129C	199786	broad.mit.edu	37	19	17651357	17651357	+	Missense_Mutation	SNP	G	A	A	rs150439084		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17651357G>A	uc010xpr.1	+	10	1367	c.1229G>A	c.(1228-1230)CGC>CAC	p.R410H	FAM129C_uc010xpq.1_Missense_Mutation_p.R410H|FAM129C_uc002ngy.3_Missense_Mutation_p.R136H|FAM129C_uc010xpu.1_Missense_Mutation_p.R136H|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Missense_Mutation_p.R136H|FAM129C_uc002nhb.2_Missense_Mutation_p.R9H	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	410											0						CACCGCCTGCGCCAGAGCCCC	0.672													7	10					0	0	1	0	0	
FAM129C	199786	broad.mit.edu	37	19	17654405	17654405	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17654405T>G	uc010xpr.1	+	13	1750	c.1612T>G	c.(1612-1614)TTT>GTT	p.F538V	FAM129C_uc010xpq.1_Missense_Mutation_p.F538V|FAM129C_uc002ngy.3_Missense_Mutation_p.F264V|FAM129C_uc010xpu.1_Missense_Mutation_p.F264V|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Intron|FAM129C_uc002nhb.2_Missense_Mutation_p.F167V	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	538											0						CTTTTTACCTTTTGTGCTGAG	0.532													18	23					0	0	1	0	0	
UNC13A	23025	broad.mit.edu	37	19	17758153	17758153	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17758153C>T	uc002nhd.2	-	17	2229	c.2229G>A	c.(2227-2229)GCG>GCA	p.A743A		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	655				A -> T (in Ref. 3).	exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GCTGCGTGTGCGCCGTCTTGG	0.617													9	15					0	0	1	0	0	
JAK3	3718	broad.mit.edu	37	19	17951088	17951088	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17951088C>T	uc002nhn.3	-	9	1305	c.1205G>A	c.(1204-1206)CGC>CAC	p.R402H	JAK3_uc010ebh.2_RNA|JAK3_uc002nho.2_Missense_Mutation_p.R402H|JAK3_uc010xpx.1_Missense_Mutation_p.R402H	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	402	SH2; atypical.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						GGGGCTGCGGCGGAGAACATA	0.483		2	Mis		acute megakaryocytic leukemia|								14	25					0	0	1	0	0	
JAK3	3718	broad.mit.edu	37	19	17955206	17955206	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17955206C>A	uc002nhn.3	-	2	121	c.21G>T	c.(19-21)GAG>GAT	p.E7D	JAK3_uc010ebh.2_RNA|JAK3_uc002nho.2_Missense_Mutation_p.E7D|JAK3_uc010xpx.1_Missense_Mutation_p.E7D|JAK3_uc010xpy.1_Missense_Mutation_p.E7D	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	7	Interaction with cytokine/interferon/growth hormone receptors (By similarity).				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						TCAGGGGCGTCTCTTCACTTG	0.652		2	Mis		acute megakaryocytic leukemia|								4	10					0.000602214	0.000612381	1	1	0	
SLC5A5	6528	broad.mit.edu	37	19	17983487	17983487	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:17983487T>C	uc002nhr.3	+	1	704	c.357_splice	c.e1+2	p.E119_splice		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide						cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						ACCTACGAGGTACCGGACAGA	0.677													10	18					0	0	1	0	0	
MAST3	23031	broad.mit.edu	37	19	18239715	18239715	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:18239715G>A	uc002nhz.3	+	12	1090	c.1090G>A	c.(1090-1092)GAA>AAA	p.E364K		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	364							ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						GAAGCCATGCGAAAGCGACTT	0.592													32	59					0	0	1	0	0	
MAST3	23031	broad.mit.edu	37	19	18248128	18248128	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:18248128C>T	uc002nhz.3	+	18	1965	c.1965C>T	c.(1963-1965)TTC>TTT	p.F655F		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	655	AGC-kinase C-terminal.						ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						AAGCCGAGTTCGTGCCCCAGC	0.627													31	66					0	0	1	0	0	
PIK3R2	5296	broad.mit.edu	37	19	18277075	18277075	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:18277075C>T	uc002nia.1	+	12	2034	c.1522C>T	c.(1522-1524)CGC>TGC	p.R508C	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	508					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						ATACCTGGAGCGCTTCCGGCG	0.507													22	48					0	0	1	0	0	
SFRS14	10147	broad.mit.edu	37	19	19120788	19120788	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:19120788C>T	uc002nkx.2	-	5	2360	c.2214G>A	c.(2212-2214)CCG>CCA	p.P738P	SFRS14_uc002nkz.1_Silent_p.P752P|SFRS14_uc002nla.1_Silent_p.P738P|SFRS14_uc002nlb.2_Silent_p.P738P|SFRS14_uc010xqk.1_Silent_p.P507P	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	738	Pro/Ser-rich.				mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			CTGGGTCTGGCGGGCAGTCCT	0.612													51	123					0	0	1	0	0	
NCAN	1463	broad.mit.edu	37	19	19360650	19360650	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:19360650G>A	uc002nlz.2	+	15	3995	c.3896G>A	c.(3895-3897)CGC>CAC	p.R1299H	NCAN_uc002nma.2_Missense_Mutation_p.A55T	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1299					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			cacAAATCCCGCAAGGAGCGC	0.413													20	35					0	0	1	0	0	
ZNF101	94039	broad.mit.edu	37	19	19790703	19790703	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:19790703G>T	uc002nni.1	+	4	1015	c.905G>T	c.(904-906)AGA>ATA	p.R302I	ZNF101_uc010ecg.1_Missense_Mutation_p.R182I|ZNF101_uc002nnj.1_Missense_Mutation_p.R182I	NM_033204	NP_149981	Q8IZC7	ZN101_HUMAN	zinc finger protein 101	302	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AGACATGAAAGAACTCATAGT	0.448													17	34					2.94398e-08	3.12196e-08	1	1	0	
ZNF506	440515	broad.mit.edu	37	19	19905446	19905446	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:19905446T>G	uc010eci.2	-	4	1398	c.1250A>C	c.(1249-1251)AAA>ACA	p.K417T	ZNF506_uc002nog.2_Intron|ZNF506_uc002noh.3_Missense_Mutation_p.K385T	NM_001099269	NP_001092739	Q5JVG8	ZN506_HUMAN	zinc finger protein 506 isoform 1	417	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding				0						AATATGAATTTTCTTATGTTT	0.338													25	50					0	0	1	0	0	
ZNF253	56242	broad.mit.edu	37	19	20003051	20003051	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:20003051G>T	uc002noj.2	+	4	1087	c.995G>T	c.(994-996)AGA>ATA	p.R332I	ZNF253_uc002nok.2_Missense_Mutation_p.R256I|ZNF253_uc002nol.2_RNA	NM_021047	NP_066385	O75346	ZN253_HUMAN	zinc finger protein 253	332	C2H2-type 6.			Missing (in Ref. 1; AAC26844).	negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATACATAAGAGAATTCATACA	0.388													7	36					0.000157383	0.000160819	1	1	0	
ZNF90	7643	broad.mit.edu	37	19	20229335	20229335	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:20229335C>A	uc002nor.2	+	4	1111	c.972C>A	c.(970-972)CTC>CTA	p.L324L	ZNF90_uc002nos.1_Intron|ZNF90_uc002not.1_Intron	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	324	C2H2-type 6.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CCTTCAAGCTCTCCTCAATCC	0.413													9	21					0.0581538	0.0584033	1	1	0	
ZNF486	90649	broad.mit.edu	37	19	20308761	20308761	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:20308761G>A	uc002nou.2	+	4	1299	c.1242G>A	c.(1240-1242)GCG>GCA	p.A414A		NM_052852	NP_443084	Q96H40	ZN486_HUMAN	zinc finger protein 486	414	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GTGGCAAAGCGTATACTACAT	0.403													18	26					0	0	1	0	0	
ZNF737	100129842	broad.mit.edu	37	19	20727843	20727843	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:20727843C>A	uc002npa.2	-	4	1346	c.1166G>T	c.(1165-1167)AGA>ATA	p.R389I		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	389					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AGTATGAATTCTCTTATGTGT	0.403													29	51					4.31634e-10	4.67161e-10	1	1	0	
ZNF626	199777	broad.mit.edu	37	19	20808104	20808104	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:20808104T>C	uc002npb.1	-	4	729	c.579A>G	c.(577-579)AAA>AAG	p.K193K	ZNF626_uc002npc.1_Silent_p.K117K	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	193	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CAGTATGAATTTTCTTATGTG	0.368													15	40					0	0	1	0	0	
ZNF85	7639	broad.mit.edu	37	19	21116931	21116931	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:21116931G>T	uc002npg.3	+	2	232	c.105G>T	c.(103-105)GAG>GAT	p.E35D	ZNF85_uc002npf.2_RNA|ZNF85_uc002nph.1_RNA|ZNF85_uc010ecn.2_Missense_Mutation_p.E3D|ZNF85_uc010eco.2_5'Flank|ZNF85_uc002npi.2_5'Flank	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	35	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						TGATGTTAGAGAACTACAGAA	0.383													59	147					1.64573e-32	2.01945e-32	1	1	0	
ZNF85	7639	broad.mit.edu	37	19	21132056	21132056	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:21132056A>G	uc002npg.3	+	4	863	c.736A>G	c.(736-738)ATT>GTT	p.I246V	ZNF85_uc010ecn.2_Missense_Mutation_p.I181V|ZNF85_uc010eco.2_Missense_Mutation_p.I194V|ZNF85_uc002npi.2_Missense_Mutation_p.I187V	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	246	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						CTCAAACCTTATTAAACATAA	0.358													14	37					0	0	1	0	0	
ZNF100	163227	broad.mit.edu	37	19	21910150	21910150	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:21910150A>G	uc002nqi.2	-	5	1163	c.964T>C	c.(964-966)TGT>CGT	p.C322R	ZNF100_uc002nqh.2_Missense_Mutation_p.C258R	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	322	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCTTTGCCACATTCTGTACAT	0.393													23	62					0	0	1	0	0	
ZNF43	7594	broad.mit.edu	37	19	21992154	21992154	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:21992154G>T	uc002nqj.2	-	4	815	c.685C>A	c.(685-687)CCC>ACC	p.P229T	ZNF43_uc010ecv.2_Missense_Mutation_p.P223T|ZNF43_uc002nql.2_Missense_Mutation_p.P223T|ZNF43_uc002nqm.2_Missense_Mutation_p.P223T|ZNF43_uc002nqk.2_Missense_Mutation_p.P159T	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	229					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		CATGTGTAGGGTTTCTCTCCA	0.338													15	40					0.000219431	0.000224109	1	1	0	
ZNF208	7757	broad.mit.edu	37	19	22155034	22155034	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22155034T>C	uc002nqp.2	-	5	2651	c.2502A>G	c.(2500-2502)AAA>AAG	p.K834K	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTTTCTTATGTTTACTAAAGA	0.373													13	37					0	0	1	0	0	
ZNF208	7757	broad.mit.edu	37	19	22155446	22155446	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22155446C>A	uc002nqp.2	-	5	2239	c.2090G>T	c.(2089-2091)AGA>ATA	p.R697I	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGTATGAATTCTCTTATGTTT	0.353													23	40					7.87624e-14	8.83987e-14	1	1	0	
ZNF208	7757	broad.mit.edu	37	19	22155637	22155637	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22155637G>T	uc002nqp.2	-	5	2048	c.1899C>A	c.(1897-1899)TTC>TTA	p.F633L	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TAAGGACTGAGAATGTACTAA	0.383													29	76					1.2476e-16	1.43726e-16	1	1	0	
ZNF208	7757	broad.mit.edu	37	19	22155698	22155698	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22155698C>A	uc002nqp.2	-	5	1987	c.1838G>T	c.(1837-1839)AGA>ATA	p.R613I	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGTATGAATTCTCTTATGTTC	0.368													20	51					3.08376e-08	3.26638e-08	1	1	0	
ZNF208	7757	broad.mit.edu	37	19	22156833	22156833	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22156833G>T	uc002nqp.2	-	4	1152	c.1003C>A	c.(1003-1005)CAT>AAT	p.H335N	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCTCCAGCATGAATTGCCTTA	0.393													21	46					5.26018e-13	5.86357e-13	1	1	0	
ZNF257	113835	broad.mit.edu	37	19	22270960	22270960	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22270960T>C	uc010ecx.2	+	4	577	c.408T>C	c.(406-408)TGT>TGC	p.C136C	ZNF257_uc010ecy.2_Silent_p.C104C	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	136					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTAACCAATGTCTGATAACTA	0.313													21	45					0	0	1	0	0	
ZNF257	113835	broad.mit.edu	37	19	22271240	22271240	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22271240A>C	uc010ecx.2	+	4	857	c.688A>C	c.(688-690)AAA>CAA	p.K230Q	ZNF257_uc010ecy.2_Missense_Mutation_p.K198Q	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	230	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				GAAACCCTACAAATGTGAAGA	0.408													10	41					0	0	1	0	0	
ZNF257	113835	broad.mit.edu	37	19	22271522	22271522	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22271522G>T	uc010ecx.2	+	4	1139	c.970G>T	c.(970-972)GCC>TCC	p.A324S	ZNF257_uc010ecy.2_Missense_Mutation_p.A292S	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	324	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				GTGTGGCAAAGCCTTTAACCA	0.433													9	70					1.11149e-13	1.24424e-13	1	1	0	
ZNF676	163223	broad.mit.edu	37	19	22363281	22363281	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22363281C>A	uc002nqs.1	-	3	1556	c.1238G>T	c.(1237-1239)AGA>ATA	p.R413I		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	413	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				AGTATGAATTCTCTTATGTTC	0.428													32	82					6.00712e-18	7.00105e-18	1	1	0	
ZNF676	163223	broad.mit.edu	37	19	22364161	22364161	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22364161T>G	uc002nqs.1	-	3	676	c.358A>C	c.(358-360)AAC>CAC	p.N120H		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	120					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TGAAAGACGTTTGCATATTTG	0.333													46	77					0	0	1	0	0	
ZNF98	148198	broad.mit.edu	37	19	22575671	22575671	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22575671T>G	uc002nqt.2	-	4	488	c.366A>C	c.(364-366)TTA>TTC	p.L122F		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	122					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				AGTATTTTCTTAACTGTAAAT	0.333													6	19					0	0	1	0	0	
ZNF98	148198	broad.mit.edu	37	19	22605014	22605014	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22605014G>T	uc002nqt.2	-	1	135	c.13C>A	c.(13-15)CTT>ATT	p.L5I		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				AGGCTTCCAAGGGGTCCTGGC	0.602													55	108					3.76628e-20	4.44189e-20	1	1	0	
ZNF492	57615	broad.mit.edu	37	19	22836210	22836210	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22836210G>T	uc002nqw.3	+	2	253	c.9G>T	c.(7-9)GAG>GAT	p.E3D		NM_020855	NP_065906	Q9P255	ZN492_HUMAN	zinc finger protein 492	3	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.0266)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00203)|Hepatocellular(1079;0.244)				TGATGTTAGAGAACTACAGAA	0.383													50	123					1.83081e-24	2.19912e-24	1	1	0	
ZNF99	7652	broad.mit.edu	37	19	22939805	22939805	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22939805G>T	uc010xrh.1	-	6	2526	c.2526C>A	c.(2524-2526)TTC>TTA	p.F842L		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TAAGGGCTGAGAAATTGCTAA	0.348													28	47					6.32553e-13	7.03772e-13	1	1	0	
ZNF99	7652	broad.mit.edu	37	19	22941589	22941589	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22941589G>A	uc010xrh.1	-	5	849	c.849C>T	c.(847-849)TGC>TGT	p.C283C		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AAGCTTTGCCGCATTCTTCAT	0.363													32	63					0	0	1	0	0	
ZNF99	7652	broad.mit.edu	37	19	22942430	22942430	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:22942430G>T	uc010xrh.1	-	4	344	c.344C>A	c.(343-345)TCT>TAT	p.S115Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTCTTGGAAAGAATCTTTTAT	0.318													10	24					2.17888e-05	2.24492e-05	1	1	0	
Unknown	0	broad.mit.edu	37	19	23328082	23328082	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23328082C>T	uc002nrb.1	+	4		c.435C>T								Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		GTTATATGTTCTCATATTGCC	0.299													4	8					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	19	23329224	23329224	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23329224G>T	uc002nrb.1	+	4		c.1577G>T								Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		ATGTGGCAAAGCTTTTAACCG	0.398													13	23					2.27111e-07	2.38128e-07	1	1	0	
Unknown	0	broad.mit.edu	37	19	23329638	23329638	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23329638A>G	uc002nrb.1	+	4		c.1991A>G								Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		AAAGCCTTTAACAAATCCTTA	0.363													5	16					0	0	1	0	0	
ZNF91	7644	broad.mit.edu	37	19	23543666	23543666	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23543666T>G	uc002nre.2	-	4	2228	c.2115A>C	c.(2113-2115)AAA>AAC	p.K705N	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.K673N	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	705	C2H2-type 20.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CATGTATTATTTTATGTTTAG	0.328													23	53					0	0	1	0	0	
ZNF91	7644	broad.mit.edu	37	19	23544521	23544521	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23544521A>T	uc002nre.2	-	4	1373	c.1260T>A	c.(1258-1260)AAT>AAA	p.N420K	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.N388K	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	420	C2H2-type 10.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GTATAGTAAGATTTGAAGATC	0.338													14	29					0	0	1	0	0	
ZNF91	7644	broad.mit.edu	37	19	23545151	23545151	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23545151A>G	uc002nre.2	-	4	743	c.630T>C	c.(628-630)TGT>TGC	p.C210C	ZNF91_uc010xrj.1_Silent_p.C178C	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	210	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CTTTACATTTACAGGACTTCT	0.328													26	49					0	0	1	0	0	
ZNF91	7644	broad.mit.edu	37	19	23545287	23545287	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23545287T>G	uc002nre.2	-	4	607	c.494A>C	c.(493-495)AAA>ACA	p.K165T	ZNF91_uc010xrj.1_Missense_Mutation_p.K133T	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	165	C2H2-type 1; degenerate.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				ATTTAAAAATTTATAGAAGAC	0.323													28	63					0	0	1	0	0	
ZNF675	171392	broad.mit.edu	37	19	23836488	23836488	+	Missense_Mutation	SNP	C	T	T	rs139009438		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23836488C>T	uc002nri.2	-	4	1429	c.1247G>A	c.(1246-1248)AGA>AAA	p.R416K		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	416	C2H2-type 10.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				AGTGTGAATTCTCTTATGTGT	0.378													18	41					0	0	1	0	0	
ZNF681	148213	broad.mit.edu	37	19	23927763	23927763	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23927763A>C	uc002nrk.3	-	4	731	c.589T>G	c.(589-591)TTC>GTC	p.F197V	ZNF681_uc002nrl.3_Missense_Mutation_p.F128V|ZNF681_uc002nrj.3_Missense_Mutation_p.F128V	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	197					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				CATTTGTAGAAATTTACTCTA	0.279													7	13					0	0	1	0	0	
ZNF681	148213	broad.mit.edu	37	19	23927902	23927902	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:23927902G>T	uc002nrk.3	-	4	592	c.450C>A	c.(448-450)ATC>ATA	p.I150I	ZNF681_uc002nrl.3_Silent_p.I81I|ZNF681_uc002nrj.3_Silent_p.I81I	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	150	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ATTTATGAAAGATTTTCATAT	0.284													7	18					0.00198382	0.00200883	1	1	0	
Unknown	0	broad.mit.edu	37	19	24097752	24097752	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:24097752G>A	uc010eda.1	+	1		c.49G>A								Sequence 93 from Patent WO0220754.																		GCTTTTAGGGGCGCAGCCTCT	0.627													11	35					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	19	24102077	24102077	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:24102077G>T	uc002nrp.1	-	3		c.1391C>A			uc010eda.1_Intron					Homo sapiens cDNA FLJ43698 fis, clone TCERX2000998.																		TTATAAGTTAGAATCAATTCT	0.308													17	43					1.15088e-07	1.20949e-07	1	1	0	
Unknown	0	broad.mit.edu	37	19	29215123	29215123	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:29215123C>A	uc002nsa.1	-	4		c.419G>T								Homo sapiens cDNA clone IMAGE:5297319, with apparent retained intron.																		CAAGCAGCACCTTGAGCACAT	0.443													7	22					5.18039e-06	5.37459e-06	1	1	0	
ZNF507	22847	broad.mit.edu	37	19	32873490	32873490	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:32873490G>A	uc002nte.2	+	6	2750	c.2478G>A	c.(2476-2478)GCG>GCA	p.A826A	ZNF507_uc002ntd.2_Silent_p.A826A	NM_001136156	NP_001129628	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	826					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|kidney(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(110;0.162)					TTAACGACGCGATTTCACAAA	0.398													58	133					0	0	1	0	0	
RGS9BP	388531	broad.mit.edu	37	19	33167820	33167820	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:33167820C>T	uc002ntp.1	+	1	1508	c.651C>T	c.(649-651)TTC>TTT	p.F217F	ANKRD27_uc002ntn.1_5'Flank|ANKRD27_uc002nto.1_5'Flank	NM_207391	NP_997274	Q6ZS82	R9BP_HUMAN	RGS9 anchor protein	217	Helical; Anchor for type IV membrane protein; (Potential).				negative regulation of signal transduction	integral to membrane				central_nervous_system(1)	1	Esophageal squamous(110;0.137)					CCATCCTTTTCGGCGCCGTGC	0.726													4	11					0	0	1	0	0	
GPATCH1	55094	broad.mit.edu	37	19	33617545	33617545	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:33617545C>A	uc002nug.1	+	19	2985	c.2671C>A	c.(2671-2673)CCA>ACA	p.P891T	GPATCH1_uc002nuh.1_Missense_Mutation_p.P268T	NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	891						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					GAATAAAAAACCAGAGAAAAG	0.468											OREG0025410	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	41					1.55795e-14	1.75964e-14	1	1	0	
LSR	51599	broad.mit.edu	37	19	35757270	35757270	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:35757270G>A	uc002nyl.2	+	6	1154	c.931G>A	c.(931-933)GCC>ACC	p.A311T	LSR_uc002nym.2_Missense_Mutation_p.A292T|LSR_uc002nyn.2_Missense_Mutation_p.A243T|LSR_uc002nyo.2_Missense_Mutation_p.A292T|LSR_uc010xsr.1_Missense_Mutation_p.A203T|LSR_uc002nyp.2_Missense_Mutation_p.A274T|USF2_uc010xss.1_5'Flank|USF2_uc002nyq.1_5'Flank|USF2_uc002nyr.1_5'Flank|USF2_uc002nys.1_5'Flank|USF2_uc002nyt.1_5'Flank	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	311	Cytoplasmic (Potential).				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			AGTGTATGCCGCCGGCAAAGC	0.622													94	36					0	0	1	0	0	
CD22	933	broad.mit.edu	37	19	35832350	35832350	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:35832350G>T	uc010edt.2	+	8	1689	c.1612G>T	c.(1612-1614)GAA>TAA	p.E538*	CD22_uc010xst.1_Nonsense_Mutation_p.E366*|CD22_uc010edu.2_Nonsense_Mutation_p.E450*|CD22_uc010edv.2_Nonsense_Mutation_p.E538*|CD22_uc002nzb.3_Nonsense_Mutation_p.E361*|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	538	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CCACCCCAAAGAAGTCCAGTT	0.527													57	24					1.93748e-29	2.36329e-29	1	1	0	
UPK1A	11045	broad.mit.edu	37	19	36168723	36168723	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:36168723G>A	uc002oaw.2	+	6	658	c.658G>A	c.(658-660)GAA>AAA	p.E220K	UPK1A_uc010eeh.2_Silent_p.S252S	NM_007000	NP_008931	O00322	UPK1A_HUMAN	uroplakin 1A	220	Extracellular (Potential).				epithelial cell differentiation|protein oligomerization	endoplasmic reticulum|integral to membrane	monosaccharide binding|protein homodimerization activity				0	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGGCTGCTTCGAACACATCGG	0.537													6	29					0	0	1	0	0	
ZBTB32	27033	broad.mit.edu	37	19	36207046	36207046	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:36207046A>G	uc002oay.2	+	5	1246	c.1036A>G	c.(1036-1038)ACC>GCC	p.T346A	ZBTB32_uc002oaz.2_RNA|MLL4_uc010eei.2_5'Flank	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	346					DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CGCACTTGCAACCTGTGCGGG	0.642													13	18					0	0	1	0	0	
PSENEN	55851	broad.mit.edu	37	19	36236861	36236861	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:36236861G>T	uc002obi.1	+	2	234	c.30G>T	c.(28-30)GAG>GAT	p.E10D	TMEM149_uc010eej.2_5'Flank|U2AF1L4_uc002obh.1_5'Flank|U2AF1L4_uc002obe.2_5'Flank|U2AF1L4_uc002obf.2_5'Flank|U2AF1L4_uc002obg.2_5'Flank|PSENEN_uc002obj.1_Missense_Mutation_p.E10D|PSENEN_uc002obk.1_RNA|LIN37_uc002obm.2_5'Flank	NM_172341	NP_758844	Q9NZ42	PEN2_HUMAN	presenilin enhancer 2	10	Lumenal (Potential).			E->S: Induces a N-linked glycosylation on N-8.	amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to plasma membrane	aspartic-type endopeptidase activity|protein binding			ovary(2)	2	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CCAATGAGGAGAAATTGAACC	0.448													67	25					1.26778e-28	1.54387e-28	1	1	0	
LIN37	55957	broad.mit.edu	37	19	36243362	36243362	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:36243362A>C	uc002obm.2	+	3	252	c.138A>C	c.(136-138)AAA>AAC	p.K46N	PSENEN_uc002obk.1_RNA|uc002obl.2_RNA	NM_019104	NP_061977	Q96GY3	LIN37_HUMAN	lin-37 homolog	46							protein binding				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AAGCTGGGAAAACACCCTCAG	0.532													23	5					0	0	1	0	0	
LIN37	55957	broad.mit.edu	37	19	36245009	36245009	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:36245009G>A	uc002obm.2	+	8	650	c.536G>A	c.(535-537)CGC>CAC	p.R179H	uc002obl.2_5'Flank	NM_019104	NP_061977	Q96GY3	LIN37_HUMAN	lin-37 homolog	179	Pro-rich.						protein binding				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCAGATCCCGCATCCCATCT	0.632													48	22					0	0	1	0	0	
PRODH2	58510	broad.mit.edu	37	19	36304052	36304052	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:36304052G>A	uc002obx.1	-	1	150	c.132C>T	c.(130-132)TGC>TGT	p.C44C		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	44					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			cacttttgtggcaattgcttc	0.055													66	34					0	0	1	0	0	
NPHS1	4868	broad.mit.edu	37	19	36341894	36341894	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:36341894C>T	uc002oby.2	-	4	495	c.495G>A	c.(493-495)GCG>GCA	p.A165A		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	165	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GTGCTGGCTTCGCGTCCCCAG	0.607													16	35					0	0	1	0	0	
ZFP82	284406	broad.mit.edu	37	19	36896524	36896524	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:36896524C>A	uc002ody.1	-	4	422	c.187G>T	c.(187-189)GAG>TAG	p.E63*		NM_133466	NP_597723	Q8N141	ZFP82_HUMAN	zinc finger protein 82 homolog	63	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						TTCCAAGGCTCTTTTCCTTGC	0.418													16	42					3.99206e-14	4.49031e-14	1	1	0	
ZNF461	92283	broad.mit.edu	37	19	37130848	37130848	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37130848G>A	uc002oem.2	-	6	627	c.399C>T	c.(397-399)AGC>AGT	p.S133S	ZNF461_uc002oen.2_Silent_p.S102S|ZNF461_uc010xtj.1_Silent_p.S110S	NM_153257	NP_694989	Q8TAF7	ZN461_HUMAN	gonadotropin inducible transcription repressor	133					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			CAGGACTATGGCTTTTAAATT	0.408													72	157					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	19	37240200	37240200	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37240200C>T	uc010efc.2	-	5	1901	c.1736G>A	c.(1735-1737)CGA>CAA	p.R579Q	uc010xtm.1_Missense_Mutation_p.R547Q					Homo sapiens zinc finger protein 850 pseudogene, mRNA (cDNA clone IMAGE:6082150).																		AGTGTGAATTCGCTGATGTTG	0.403													4	11					0	0	1	0	0	
ZNF790	388536	broad.mit.edu	37	19	37309846	37309846	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37309846C>T	uc002oew.2	-	5	1519	c.1400G>A	c.(1399-1401)CGA>CAA	p.R467Q	uc002oev.1_Intron	NM_206894	NP_996777	Q6PG37	ZN790_HUMAN	zinc finger protein 790	467	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TTTCTGATGTCGATTAAACTC	0.368													72	35					0	0	1	0	0	
ZNF790	388536	broad.mit.edu	37	19	37310341	37310341	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37310341C>A	uc002oew.2	-	5	1024	c.905G>T	c.(904-906)AGA>ATA	p.R302I	uc002oev.1_Intron	NM_206894	NP_996777	Q6PG37	ZN790_HUMAN	zinc finger protein 790	302	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|skin(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			AGTATGAATTCTCTGATGTCG	0.383													52	22					2.27781e-18	2.66151e-18	1	1	0	
ZNF345	25850	broad.mit.edu	37	19	37368393	37368393	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37368393C>T	uc002oex.2	+	3	1039	c.661C>T	c.(661-663)CGG>TGG	p.R221W	ZNF345_uc002oey.3_Missense_Mutation_p.R221W|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	221	C2H2-type 6.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TACTCAACATCGGCGGATTCA	0.448													26	76					0	0	1	0	0	
ZNF345	25850	broad.mit.edu	37	19	37369178	37369178	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37369178C>T	uc002oex.2	+	3	1824	c.1446C>T	c.(1444-1446)TGC>TGT	p.C482C	ZNF345_uc002oey.3_Silent_p.C482C|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	482					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGAAACTCTGCGAATTGGAAA	0.343													37	85					0	0	1	0	0	
ZNF829	374899	broad.mit.edu	37	19	37382420	37382420	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37382420G>A	uc002ofa.1	-	6	1635	c.1273C>T	c.(1273-1275)CGC>TGC	p.R425C	ZNF345_uc002oez.2_Intron	NM_001037232	NP_001032309	Q3KNS6	ZN829_HUMAN	zinc finger protein 829	425	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CCCTCATGGCGAATGAGGTCA	0.378													64	18					0	0	1	0	0	
ZNF829	374899	broad.mit.edu	37	19	37382971	37382971	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37382971T>G	uc002ofa.1	-	6	1084	c.722A>C	c.(721-723)GAA>GCA	p.E241A	ZNF345_uc002oez.2_Intron	NM_001037232	NP_001032309	Q3KNS6	ZN829_HUMAN	zinc finger protein 829	241	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTCCTTACATTCATAGGGTTT	0.368													31	54					0	0	1	0	0	
ZNF829	374899	broad.mit.edu	37	19	37399357	37399357	+	Missense_Mutation	SNP	G	A	A	rs76856236	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37399357G>A	uc002ofa.1	-	4	463	c.101C>T	c.(100-102)CCG>CTG	p.P34L	ZNF345_uc002oez.2_Intron|ZNF829_uc002ofb.2_Missense_Mutation_p.P34L	NM_001037232	NP_001032309	Q3KNS6	ZN829_HUMAN	zinc finger protein 829	34					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAACATCACCGGCCCCTGAAA	0.428													82	41					0	0	1	0	0	
ZNF568	374900	broad.mit.edu	37	19	37440603	37440603	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37440603A>C	uc002ofc.2	+	7	1063	c.548A>C	c.(547-549)AAG>ACG	p.K183T	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Missense_Mutation_p.K107T|ZNF568_uc010efe.2_Missense_Mutation_p.K107T|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	183					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCACTTGATAAGGGTTTGGAA	0.348													101	42					0	0	1	0	0	
ZNF568	374900	broad.mit.edu	37	19	37441368	37441368	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37441368G>A	uc002ofc.2	+	7	1828	c.1313G>A	c.(1312-1314)CGA>CAA	p.R438Q	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Missense_Mutation_p.R362Q|ZNF568_uc010efe.2_Missense_Mutation_p.R362Q|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	438	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GTACATATGCGAAATCATACA	0.393													42	75					0	0	1	0	0	
ZNF568	374900	broad.mit.edu	37	19	37441536	37441536	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37441536G>T	uc002ofc.2	+	7	1996	c.1481G>T	c.(1480-1482)AGA>ATA	p.R494I	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Missense_Mutation_p.R418I|ZNF568_uc010efe.2_Missense_Mutation_p.R418I|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	494	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CGACACCAGAGAATTCATACG	0.393													72	28					2.51111e-31	3.07626e-31	1	1	0	
ZNF585B	92285	broad.mit.edu	37	19	37676966	37676966	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37676966C>A	uc002ofq.2	-	5	1727	c.1473G>T	c.(1471-1473)GAG>GAT	p.E491D	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.E305D	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	491					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TATAAGATTTCTCTCCTGTAT	0.413													75	39					5.14759e-42	6.38442e-42	1	1	0	
ZNF383	163087	broad.mit.edu	37	19	37734483	37734483	+	Missense_Mutation	SNP	C	T	T	rs149725989		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37734483C>T	uc002oft.1	+	8	1925	c.1345C>T	c.(1345-1347)CCC>TCC	p.P449S	ZNF383_uc002ofs.1_Missense_Mutation_p.P384S|ZNF383_uc002ofu.1_Missense_Mutation_p.P449S	NM_152604	NP_689817	Q8NA42	ZN383_HUMAN	zinc finger protein 383	449					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGGTGAAAAGCCCTATAACTG	0.363													38	75					0	0	1	0	0	
ZNF527	84503	broad.mit.edu	37	19	37870123	37870123	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37870123G>T	uc010efk.1	+	3	246	c.135G>T	c.(133-135)GAG>GAT	p.E45D	ZNF527_uc002ogf.3_Missense_Mutation_p.E45D|ZNF527_uc010xtq.1_RNA|ZNF527_uc002oge.2_Missense_Mutation_p.E45D	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	45	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCATGTTGGAGAACTACAGGA	0.438													70	40					3.20846e-33	3.94236e-33	1	1	0	
ZNF527	84503	broad.mit.edu	37	19	37880588	37880588	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37880588G>T	uc010efk.1	+	5	1748	c.1637G>T	c.(1636-1638)AGA>ATA	p.R546I	ZNF527_uc002ogf.3_Missense_Mutation_p.R514I|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	546	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CAACATCAAAGAATTCATACT	0.403													66	37					5.82089e-37	7.19661e-37	1	1	0	
ZNF569	148266	broad.mit.edu	37	19	37903657	37903657	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37903657C>T	uc002ogi.2	-	6	2461	c.1903G>A	c.(1903-1905)GAC>AAC	p.D635N	ZNF569_uc002ogh.2_Missense_Mutation_p.D476N|ZNF569_uc002ogj.2_Missense_Mutation_p.D659N	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	635	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTACTACAGTCGAAGGGTTTC	0.403													56	104					0	0	1	0	0	
ZNF569	148266	broad.mit.edu	37	19	37904545	37904545	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37904545C>T	uc002ogi.2	-	6	1573	c.1015G>A	c.(1015-1017)GCA>ACA	p.A339T	ZNF569_uc002ogh.2_Missense_Mutation_p.A180T|ZNF569_uc002ogj.2_Missense_Mutation_p.A363T	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	339	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GCAAGGGATGCAATTCGAGGG	0.393													54	108					0	0	1	0	0	
ZNF570	148268	broad.mit.edu	37	19	37966812	37966812	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37966812A>C	uc002ogk.1	+	3	592	c.63A>C	c.(61-63)GTA>GTC	p.V21V	ZNF570_uc010efl.1_Silent_p.V77V|ZNF570_uc010xtr.1_5'UTR	NM_144694	NP_653295	Q96NI8	ZN570_HUMAN	zinc finger protein 570	21	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATGTGGCTGTAGACTTCTCCC	0.318													24	93					0	0	1	0	0	
ZNF570	148268	broad.mit.edu	37	19	37975024	37975024	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:37975024C>A	uc002ogk.1	+	5	1029	c.500C>A	c.(499-501)TCT>TAT	p.S167Y	ZNF570_uc010efl.1_Missense_Mutation_p.S223Y|ZNF570_uc010xtr.1_5'UTR	NM_144694	NP_653295	Q96NI8	ZN570_HUMAN	zinc finger protein 570	167					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAATATAAATCTTGGGGAAGT	0.368													78	143					4.00405e-42	4.96687e-42	1	1	0	
ZNF571	51276	broad.mit.edu	37	19	38056098	38056098	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:38056098C>A	uc002ogt.2	-	4	1333	c.1232G>T	c.(1231-1233)AGA>ATA	p.R411I	uc002ogm.2_Intron|uc002ogn.2_Intron|ZNF540_uc002ogo.2_Intron|ZNF540_uc002ogp.2_Intron|ZNF540_uc002ogq.2_Intron|ZNF571_uc002ogr.1_Intron|uc002ogs.1_5'Flank|ZNF571_uc010efp.2_Missense_Mutation_p.R411I	NM_016536	NP_057620	Q7Z3V5	ZN571_HUMAN	zinc finger protein 571	411	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GGTATGAATTCTTTGATGTTG	0.373													36	18					8.53417e-09	9.10905e-09	1	1	0	
ZFP30	22835	broad.mit.edu	37	19	38126696	38126696	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:38126696T>G	uc002ogv.1	-	6	1262	c.746A>C	c.(745-747)AAA>ACA	p.K249T	ZFP30_uc002ogw.1_Missense_Mutation_p.K249T|ZFP30_uc002ogx.1_Missense_Mutation_p.K249T|ZFP30_uc010xtt.1_Missense_Mutation_p.K248T	NM_014898	NP_055713	Q9Y2G7	ZFP30_HUMAN	zinc finger protein 30 homolog	249	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTAAAGGCTTTCCCACATTC	0.403													26	62					0	0	1	0	0	
ZNF573	126231	broad.mit.edu	37	19	38229502	38229502	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:38229502C>A	uc002ohe.2	-	4	1911	c.1889G>T	c.(1888-1890)AGA>ATA	p.R630I	ZNF573_uc010efs.2_Missense_Mutation_p.R543I|ZNF573_uc002ohd.2_Missense_Mutation_p.R628I|ZNF573_uc002ohf.2_Missense_Mutation_p.R572I|ZNF573_uc002ohg.2_Missense_Mutation_p.R542I	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	610	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			AGTATGAATTCTCTCATGTTG	0.413													65	124					2.93687e-30	3.59034e-30	1	1	0	
SIPA1L3	23094	broad.mit.edu	37	19	38610322	38610322	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:38610322T>C	uc002ohk.2	+	9	3177	c.2668T>C	c.(2668-2670)TTG>CTG	p.L890L		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	890					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CGACTGCATTTTGGGAATTTC	0.587													53	84					0	0	1	0	0	
FAM98C	147965	broad.mit.edu	37	19	38899392	38899392	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:38899392T>C	uc002oin.1	+	8	939	c.920T>C	c.(919-921)GTG>GCG	p.V307A	FAM98C_uc002oio.1_Missense_Mutation_p.V225A|FAM98C_uc010xtz.1_Silent_p.G173G	NM_174905	NP_777565	Q17RN3	FA98C_HUMAN	hypothetical protein LOC147965	307										skin(1)	1	all_cancers(60;3.95e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			AACTCTCAGGTGCTTATGGGC	0.557													70	33					0	0	1	0	0	
RYR1	6261	broad.mit.edu	37	19	38959681	38959681	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:38959681G>A	uc002oit.2	+	26	3587	c.3457G>A	c.(3457-3459)GAC>AAC	p.D1153N	RYR1_uc002oiu.2_Missense_Mutation_p.D1153N	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1153	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTGTATGATCGACCTCACAGA	0.582													55	20					0	0	1	0	0	
IL29	282618	broad.mit.edu	37	19	39789108	39789108	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:39789108C>T	uc002okv.2	+	5	652	c.555C>T	c.(553-555)GCC>GCT	p.A185A		NM_172140	NP_742152	Q8IU54	IL29_HUMAN	interleukin 29 precursor	185					defense response to virus|negative regulation of cell proliferation|negative regulation of interleukin-13 production|negative regulation of interleukin-5 production|negative regulation of memory T cell differentiation|negative regulation of transcription, DNA-dependent|negative regulation of type 2 immune response|positive regulation of immune response|positive regulation of interferon-gamma production|positive regulation of MHC class I biosynthetic process|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of STAT protein	extracellular space|interleukin-28 receptor complex	cytokine activity|interleukin-28 receptor binding				0	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			AATATGTGGCCGATGGGAACC	0.557													106	59					0	0	1	0	0	
LRFN1	57622	broad.mit.edu	37	19	39804604	39804604	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:39804604T>C	uc002okw.2	-	1	1373	c.1373A>G	c.(1372-1374)TAC>TGC	p.Y458C		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	458	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GGAACTGTTGTACTGAACCTG	0.657													10	56					0	0	1	0	0	
PLEKHG2	64857	broad.mit.edu	37	19	39911616	39911616	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:39911616G>A	uc010xuz.1	+	14	1752	c.1427G>A	c.(1426-1428)CGC>CAC	p.R476H	PLEKHG2_uc010xuy.1_Missense_Mutation_p.R417H|PLEKHG2_uc002olj.2_Missense_Mutation_p.R476H|PLEKHG2_uc010xva.1_Intron	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	476					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			TCTGTGATTCGCCGAGGCCGC	0.672													18	55					0	0	1	0	0	
FCGBP	8857	broad.mit.edu	37	19	40392521	40392521	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:40392521G>T	uc002omp.3	-	16	7991	c.7983C>A	c.(7981-7983)TTC>TTA	p.F2661L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2661	VWFD 6.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGAGCCCACAGAACTCCTCCT	0.632													18	114					6.94344e-10	7.49515e-10	1	1	0	
ZNF546	339327	broad.mit.edu	37	19	40521315	40521315	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:40521315G>T	uc002oms.2	+	7	2394	c.2138G>T	c.(2137-2139)AGA>ATA	p.R713I	ZNF546_uc002omt.2_Missense_Mutation_p.R687I	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	713	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TTACATCAAAGAATTCACACT	0.388													25	70					3.08376e-08	3.26638e-08	1	1	0	
ZNF780B	163131	broad.mit.edu	37	19	40540394	40540394	+	Missense_Mutation	SNP	C	A	A	rs1831061		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:40540394C>A	uc002omu.2	-	5	2437	c.2372G>T	c.(2371-2373)AGA>ATA	p.R791I	ZNF780B_uc002omv.2_Missense_Mutation_p.R643I	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	791	C2H2-type 23; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TAGGTGAAGTCTAAAAGCCTT	0.423													68	26					2.02796e-37	2.50876e-37	1	1	0	
ZNF780B	163131	broad.mit.edu	37	19	40540950	40540950	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:40540950A>C	uc002omu.2	-	5	1881	c.1816T>G	c.(1816-1818)TTT>GTT	p.F606V	ZNF780B_uc002omv.2_Missense_Mutation_p.F458V	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	606	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					CCAGTATGAAATTTCTGATGT	0.408													56	106					0	0	1	0	0	
ZNF780B	163131	broad.mit.edu	37	19	40541040	40541040	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:40541040G>A	uc002omu.2	-	5	1791	c.1726C>T	c.(1726-1728)CGA>TGA	p.R576*	ZNF780B_uc002omv.2_Nonsense_Mutation_p.R428*	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	576	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAATACTTCGATGTTGATTA	0.378													48	114					0	0	1	0	0	
ZNF780B	163131	broad.mit.edu	37	19	40541891	40541891	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:40541891A>C	uc002omu.2	-	5	940	c.875T>G	c.(874-876)CTT>CGT	p.L292R	ZNF780B_uc002omv.2_Missense_Mutation_p.L144R	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	292	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					ATGCTGAATAAGATTTGAACC	0.378													97	49					0	0	1	0	0	
SPTBN4	57731	broad.mit.edu	37	19	41063123	41063123	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:41063123G>T	uc002ony.2	+	26	5570	c.5484G>T	c.(5482-5484)CAG>CAT	p.Q1828H	SPTBN4_uc002onx.2_Missense_Mutation_p.Q1828H|SPTBN4_uc002onz.2_Missense_Mutation_p.Q1828H|SPTBN4_uc010egx.2_Missense_Mutation_p.Q571H|SPTBN4_uc002ooa.2_Missense_Mutation_p.Q504H	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1828	Spectrin 15.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CACGGGCCCAGCTGCTGGCCG	0.647													25	39					3.73808e-20	4.40927e-20	1	1	0	
CYP2A13	1553	broad.mit.edu	37	19	41597723	41597723	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:41597723C>A	uc002opt.2	+	5	750	c.741C>A	c.(739-741)TTC>TTA	p.F247L		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	247					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	TGGAGGACTTCATCGCCAAGA	0.557													34	58					3.03874e-20	3.58487e-20	1	1	0	
CYP2F1	1572	broad.mit.edu	37	19	41631482	41631482	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:41631482T>G	uc002opu.1	+	9	1293	c.1237T>G	c.(1237-1239)TTT>GTT	p.F413V	CYP2F1_uc010xvw.1_Intron|CYP2F1_uc010xvv.1_3'UTR|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	413					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						CCCCGAGCATTTTTTGGATGC	0.547													26	52					0	0	1	0	0	
CYP2S1	29785	broad.mit.edu	37	19	41700500	41700500	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:41700500C>T	uc002opw.2	+	2	284	c.229C>T	c.(229-231)CCT>TCT	p.P77S	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_5'UTR	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	77					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						ACCGTGGCGGCCTGTGGTGGT	0.637													53	18					0	0	1	0	0	
ARHGEF1	9138	broad.mit.edu	37	19	42396120	42396120	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:42396120C>T	uc002orx.2	+	5	359	c.250C>T	c.(250-252)CTG>TTG	p.L84L	ARHGEF1_uc002orw.1_Silent_p.L84L|ARHGEF1_uc002ory.2_Intron|ARHGEF1_uc002orz.2_5'UTR|ARHGEF1_uc002osa.2_Silent_p.L99L|ARHGEF1_uc002osb.2_Intron	NM_004706	NP_004697	Q92888	ARHG1_HUMAN	Rho guanine nucleotide exchange factor 1 isoform	84	RGSL.				cell proliferation|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(3)|large_intestine(1)	4		Renal(1328;0.000518)|Hepatocellular(1079;0.0046)|Medulloblastoma(540;0.0425)		Epithelial(262;5.89e-46)|GBM - Glioblastoma multiforme(1328;2.49e-12)|STAD - Stomach adenocarcinoma(1328;0.00644)		TGCCGACATGCTGGGCTCACT	0.542													28	46					0	0	1	0	0	
PAFAH1B3	5050	broad.mit.edu	37	19	42806432	42806432	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:42806432C>T	uc002otg.2	-	1	365	c.30G>A	c.(28-30)AAG>AAA	p.K10K	PAFAH1B3_uc010xwi.1_Silent_p.K10K|PAFAH1B3_uc010xwj.1_Silent_p.K10K|PRR19_uc002oth.1_5'UTR|PRR19_uc002oti.2_5'UTR	NM_002573	NP_002564	Q15102	PA1B3_HUMAN	platelet-activating factor acetylhydrolase,	10					lipid catabolic process|nervous system development	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity|protein binding				0		Prostate(69;0.0704)				CCGGCGTGGGCTTGCTGGCTG	0.687													9	3					0	0	1	0	0	
LIPE	3991	broad.mit.edu	37	19	42912401	42912401	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:42912401C>T	uc002otr.2	-	3	1770	c.1493G>A	c.(1492-1494)CGC>CAC	p.R498H	uc010eif.1_Intron|LIPE_uc002ots.1_Missense_Mutation_p.R243H	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	498					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				TGTCTCGTTGCGTTTGTAGTG	0.632													57	113					0	0	1	0	0	
CEACAM8	1088	broad.mit.edu	37	19	43087468	43087468	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:43087468G>T	uc002oud.2	-	5	1082	c.980C>A	c.(979-981)TCT>TAT	p.S327Y	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	327					immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				GAGGCCAGGAGAACTTCCTTG	0.473													20	52					1.22574e-08	1.30575e-08	1	1	0	
PSG1	5669	broad.mit.edu	37	19	43375919	43375919	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:43375919G>A	uc002ovb.2	-	3	847	c.709C>T	c.(709-711)CCG>TCG	p.P237S	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.P237S|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.P237S|PSG1_uc010eio.1_Missense_Mutation_p.P237S|PSG1_uc002oux.1_Missense_Mutation_p.P166S|PSG1_uc002ouy.1_Missense_Mutation_p.H237Y|PSG1_uc002ouz.1_Missense_Mutation_p.P237S|PSG1_uc002ova.1_Intron|PSG1_uc002ovc.2_Intron|PSG1_uc002ovd.1_Missense_Mutation_p.P237S	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	237					female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				AGATACTCACGGAGGAGATTC	0.537													324	143					0	0	1	0	0	
PSG2	5670	broad.mit.edu	37	19	43576027	43576027	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:43576027C>T	uc002ovr.2	-	4	882	c.789G>A	c.(787-789)GCG>GCA	p.A263A	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Silent_p.A263A|PSG2_uc010eiq.1_Silent_p.A263A|PSG2_uc002ovs.3_Silent_p.A263A|PSG2_uc002ovt.3_Silent_p.A263A	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	263	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				GGTTAGAGTTCGCGAAGCAAG	0.443													214	91					0	0	1	0	0	
PSG5	5673	broad.mit.edu	37	19	43689144	43689144	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:43689144C>T	uc002ovu.2	-	2	351	c.220G>A	c.(220-222)GAC>AAC	p.D74N	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Missense_Mutation_p.D2N|PSG5_uc002ovx.2_Missense_Mutation_p.D74N|PSG5_uc002ovv.2_Missense_Mutation_p.D74N|PSG5_uc002ovw.2_Missense_Mutation_p.D74N	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	74	Ig-like V-type.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				TGGTAGAGGTCCATCAGTTGT	0.433													138	262					0	0	1	0	0	
PSG4	5672	broad.mit.edu	37	19	43699426	43699426	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:43699426C>T	uc002ovy.2	-	4	812	c.710_splice	c.e4-1	p.P237_splice	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_Splice_Site|PSG4_uc002owb.2_Splice_Site_p.P144_splice|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform						defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GACAGCTTTGCTGTGTGGATA	0.468													156	73					0	0	1	0	0	
ZNF221	7638	broad.mit.edu	37	19	44470846	44470846	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:44470846G>T	uc002oxx.2	+	6	1520	c.1192G>T	c.(1192-1194)GAA>TAA	p.E398*	ZNF221_uc010ejb.1_Nonsense_Mutation_p.E398*|ZNF221_uc010xws.1_Nonsense_Mutation_p.E398*	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	398	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				TAATTGTAAAGAATGTGGGAA	0.413													42	79					6.5261e-18	7.59833e-18	1	1	0	
ZNF223	7766	broad.mit.edu	37	19	44570416	44570416	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:44570416G>T	uc002oyf.1	+	5	688	c.435G>T	c.(433-435)CAG>CAT	p.Q145H	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	145					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				ACACAGGACAGAAACCTTCCA	0.458													57	132					1.10885e-35	1.36864e-35	1	1	0	
ZNF224	7767	broad.mit.edu	37	19	44611252	44611252	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:44611252G>T	uc002oyh.1	+	6	1241	c.939G>T	c.(937-939)GAG>GAT	p.E313D	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	313					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				ACACGGCAGAGAAACCATTCC	0.433													141	81					1.14977e-51	1.43101e-51	1	1	0	
ZNF225	7768	broad.mit.edu	37	19	44636406	44636406	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:44636406A>C	uc002oyj.1	+	5	1882	c.1639A>C	c.(1639-1641)AAG>CAG	p.K547Q	ZNF225_uc010eje.1_Missense_Mutation_p.K464Q|ZNF225_uc010ejf.1_Missense_Mutation_p.K547Q	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	547	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				AGAGTGTGGGAAGGGCTTCAA	0.438													46	98					0	0	1	0	0	
ZNF226	7769	broad.mit.edu	37	19	44681081	44681081	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:44681081G>T	uc002oyp.2	+	6	1810	c.1666G>T	c.(1666-1668)GAG>TAG	p.E556*	ZNF226_uc002oyq.2_Nonsense_Mutation_p.E439*|ZNF226_uc002oyr.2_Nonsense_Mutation_p.E439*|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Nonsense_Mutation_p.E556*|ZNF226_uc002oyt.2_Nonsense_Mutation_p.E556*	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	556					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				CCACAGTATAGAGAAACCTTT	0.453													65	124					6.2918e-36	7.76943e-36	1	1	0	
ZNF226	7769	broad.mit.edu	37	19	44681178	44681178	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:44681178A>C	uc002oyp.2	+	6	1907	c.1763A>C	c.(1762-1764)AAA>ACA	p.K588T	ZNF226_uc002oyq.2_Missense_Mutation_p.K471T|ZNF226_uc002oyr.2_Missense_Mutation_p.K471T|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Missense_Mutation_p.K588T|ZNF226_uc002oyt.2_Missense_Mutation_p.K588T	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	588	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				AAACCATACAAATGTGAAGAG	0.443													105	51					0	0	1	0	0	
SFRS16	11129	broad.mit.edu	37	19	45563839	45563839	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:45563839G>A	uc002pak.2	+	10	915	c.817G>A	c.(817-819)GAG>AAG	p.E273K	SFRS16_uc002pal.2_RNA|SFRS16_uc010xxh.1_Missense_Mutation_p.E211K|SFRS16_uc002pam.2_Missense_Mutation_p.E273K|SFRS16_uc002pan.1_RNA	NM_007056	NP_008987	Q8N2M8	CLASR_HUMAN	splicing factor, arginine/serine-rich 16	273					mRNA processing|RNA splicing	nucleus					0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCAGCGGAGAGAGTTTCGGGA	0.667													8	29					0	0	1	0	0	
EXOC3L2	90332	broad.mit.edu	37	19	45731000	45731000	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:45731000C>A	uc002pay.1	-	5	365	c.324G>T	c.(322-324)GAG>GAT	p.E108D		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	108										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		CTGCTGGGTTCTCATGGAATC	0.622													4	10					0.00024832	0.000253393	1	1	0	
CKM	1158	broad.mit.edu	37	19	45810167	45810167	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:45810167G>A	uc002pbd.2	-	8	1061	c.987C>T	c.(985-987)GCC>GCT	p.A329A		NM_001824	NP_001815	P06732	KCRM_HUMAN	muscle creatine kinase	329	Phosphagen kinase C-terminal.				creatine metabolic process	cytosol	ATP binding|creatine kinase activity			skin(1)	1		Ovarian(192;0.0336)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;2.29e-44)|Epithelial(262;1.05e-38)|GBM - Glioblastoma multiforme(486;3.56e-07)	Creatine(DB00148)	CTGAGCCCACGGCAGCTGTGT	0.617													96	56					0	0	1	0	0	
ERCC2	2068	broad.mit.edu	37	19	45868310	45868310	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:45868310C>T	uc002pbj.2	-	6	514	c.467G>A	c.(466-468)CGA>CAA	p.R156Q	ERCC2_uc010ejz.2_Intron|ERCC2_uc002pbk.2_Missense_Mutation_p.R132Q|ERCC2_uc002pbl.3_Missense_Mutation_p.R132Q|ERCC2_uc010xxj.1_Intron	NM_000400	NP_000391	P18074	ERCC2_HUMAN	excision repair cross-complementing rodent	156	Helicase ATP-binding.				cell cycle checkpoint|chromosome segregation|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|UV protection|viral reproduction	cytoplasm|holo TFIIH complex|MMXD complex	5'-3' DNA helicase activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding|protein C-terminus binding|protein N-terminus binding			lung(2)|pancreas(1)	3		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0226)		CTCATAGAATCGGCAGTGGGG	0.637			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				21	11					0	0	1	0	0	
RTN2	6253	broad.mit.edu	37	19	45998139	45998139	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:45998139G>T	uc002pcb.2	-	3	432	c.204C>A	c.(202-204)GCC>GCA	p.A68A	RTN2_uc002pcc.2_Silent_p.A68A|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	68						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		CACCATCAAAGGCGATGTAGG	0.677													35	20					9.93527e-08	1.04749e-07	1	1	0	
DMPK	1760	broad.mit.edu	37	19	46282726	46282726	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:46282726T>G	uc002pdd.1	-	2	881	c.337A>C	c.(337-339)AAC>CAC	p.N113H	DMPK_uc010xxs.1_Missense_Mutation_p.N14H|DMPK_uc002pde.1_Missense_Mutation_p.N113H|DMPK_uc002pdf.1_Missense_Mutation_p.N103H|DMPK_uc002pdg.1_Missense_Mutation_p.N103H|DMPK_uc002pdh.1_Missense_Mutation_p.N103H|DMPK_uc002pdi.1_Missense_Mutation_p.N129H|DMPK_uc010xxt.1_Missense_Mutation_p.N103H|DMPK_uc010xxu.1_Missense_Mutation_p.N113H	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1	113	Protein kinase.				regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		TCCCACTTGTTCATGATCTTC	0.607													52	98					0	0	1	0	0	
RSPH6A	81492	broad.mit.edu	37	19	46308102	46308102	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:46308102C>A	uc002pdm.2	-	3	1204	c.1061G>T	c.(1060-1062)AGC>ATC	p.S354I	RSPH6A_uc002pdl.2_Missense_Mutation_p.S90I	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	354						intracellular				ovary(1)|central_nervous_system(1)	2						CACCAGGTAGCTGCGTTTGAT	0.438													15	29					2.61681e-11	2.86667e-11	1	1	0	
MYPOP	339344	broad.mit.edu	37	19	46393881	46393881	+	Nonstop_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:46393881T>C	uc002pdt.2	-	3	1287	c.1200A>G	c.(1198-1200)TGA>TGG	p.*400W		NM_001012643	NP_001012661	Q86VE0	MYPOP_HUMAN	Myb protein P42POP	400						nucleus	DNA binding				0						ATAGTAGATTTCACGGAGATT	0.637													51	14					0	0	1	0	0	
NANOS2	339345	broad.mit.edu	37	19	46417834	46417834	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:46417834G>T	uc002pdu.2	-	1	203	c.118C>A	c.(118-120)CCC>ACC	p.P40T		NM_001029861	NP_001025032	P60321	NANO2_HUMAN	nanos homolog 2	40					germ-line stem cell maintenance|mRNA catabolic process|multicellular organismal development|negative regulation of meiosis|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|perinuclear region of cytoplasm	RNA binding|zinc ion binding				0		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0668)|Epithelial(262;0.231)		GGAGGCCCGGGACTTGGCTCC	0.657													26	52					1.77063e-15	2.01907e-15	1	1	0	
PNMAL1	55228	broad.mit.edu	37	19	46973370	46973370	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:46973370G>A	uc002peq.3	-	2	1229	c.923C>T	c.(922-924)GCG>GTG	p.A308V	PNMAL1_uc002per.3_Missense_Mutation_p.A308V	NM_018215	NP_060685	Q86V59	PNML1_HUMAN	PNMA-like 1 isoform a	308											0		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000166)|all cancers(93;0.0014)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		GGCACATTTCGCCATGGGCTT	0.587													145	79					0	0	1	0	0	
KPTN	11133	broad.mit.edu	37	19	47986471	47986471	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:47986471C>A	uc002pgy.2	-	4	500	c.396G>T	c.(394-396)CAG>CAT	p.Q132H	KPTN_uc010xys.1_RNA|uc002pgz.1_5'Flank	NM_007059	NP_008990	Q9Y664	KPTN_HUMAN	kaptin (actin binding protein)	132					actin filament organization|cellular component movement|sensory perception of sound	actin cytoskeleton|growth cone|microtubule organizing center|nucleus|perinuclear region of cytoplasm|stereocilium	actin binding			ovary(1)	1		all_cancers(25;1.55e-10)|all_epithelial(76;3.4e-08)|all_lung(116;1.73e-07)|Lung NSC(112;3.95e-07)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		OV - Ovarian serous cystadenocarcinoma(262;0.000428)|all cancers(93;0.000631)|Epithelial(262;0.0153)|GBM - Glioblastoma multiforme(486;0.0694)		TCAGGCAGCTCTCTGTAGGCA	0.602													72	149					5.12816e-46	6.37479e-46	1	1	0	
SULT2A1	6822	broad.mit.edu	37	19	48386971	48386971	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:48386971G>A	uc002phr.2	-	2	348	c.208C>T	c.(208-210)CCC>TCC	p.P70S		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	70					3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		TCCCAGATGGGCACAGATTGG	0.488													49	19					0	0	1	0	0	
CABP5	56344	broad.mit.edu	37	19	48543980	48543980	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:48543980G>A	uc002phu.1	-	3	245	c.120C>T	c.(118-120)TTC>TTT	p.F40F		NM_019855	NP_062829	Q9NP86	CABP5_HUMAN	calcium binding protein 5	40	EF-hand 1.				signal transduction	cytoplasm	calcium ion binding			skin(1)	1		all_cancers(25;1.86e-08)|all_lung(116;1.14e-06)|all_epithelial(76;1.16e-06)|Lung NSC(112;2.54e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;4.09e-05)|all cancers(93;0.000322)|Epithelial(262;0.01)|GBM - Glioblastoma multiforme(486;0.058)		GGTCCTTATCGAACTCAAGAA	0.493													56	29					0	0	1	0	0	
ZNF114	163071	broad.mit.edu	37	19	48789668	48789668	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:48789668C>A	uc002pil.1	+	6	1284	c.787C>A	c.(787-789)CAC>AAC	p.H263N	ZNF114_uc010elv.1_Missense_Mutation_p.H263N|ZNF114_uc002pim.1_Missense_Mutation_p.H263N|ZNF114_uc002pin.2_Missense_Mutation_p.H229N	NM_153608	NP_705836	Q8NC26	ZN114_HUMAN	zinc finger protein 114	263					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_epithelial(76;8.01e-05)|all_lung(116;0.000112)|Lung NSC(112;0.000192)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;7.56e-05)|all cancers(93;0.000113)|Epithelial(262;0.00962)|GBM - Glioblastoma multiforme(486;0.0153)		TAACTCAATTCACGCCATGCA	0.468													92	48					1.46924e-35	1.8132e-35	1	1	0	
KCNJ14	3770	broad.mit.edu	37	19	48965373	48965373	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:48965373T>C	uc002pje.1	+	2	797	c.392T>C	c.(391-393)GTG>GCG	p.V131A	KCNJ14_uc002pjf.1_Missense_Mutation_p.V131A	NM_013348	NP_037480	Q9UNX9	IRK14_HUMAN	potassium inwardly-rectifying channel J14	131	Extracellular (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000109)|all cancers(93;0.000129)|Epithelial(262;0.0081)|GBM - Glioblastoma multiforme(486;0.0222)		TTCTCACACGTGGCCAGCTTC	0.721													6	5					0	0	1	0	0	
KCNJ14	3770	broad.mit.edu	37	19	48967513	48967513	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:48967513G>A	uc002pje.1	+	3	1195	c.790G>A	c.(790-792)GAT>AAT	p.D264N	KCNJ14_uc002pjf.1_Missense_Mutation_p.D264N	NM_013348	NP_037480	Q9UNX9	IRK14_HUMAN	potassium inwardly-rectifying channel J14	264	Cytoplasmic (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000109)|all cancers(93;0.000129)|Epithelial(262;0.0081)|GBM - Glioblastoma multiforme(486;0.0222)		TGGAGGCACCGATCGTATCTT	0.602													9	20					0	0	1	0	0	
IZUMO1	284359	broad.mit.edu	37	19	49245472	49245472	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:49245472A>C	uc002pkj.2	-	7	1142	c.594T>G	c.(592-594)TTT>TTG	p.F198L	RASIP1_uc002pki.2_5'Flank|IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	198	Ig-like C2-type.|Extracellular (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		TCACCCTGTAAAAGCTGTAAT	0.498													78	33					0	0	1	0	0	
PLEKHA4	57664	broad.mit.edu	37	19	49364675	49364675	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:49364675G>A	uc002pkx.2	-	5	900	c.349C>T	c.(349-351)CGG>TGG	p.R117W	PLEKHA4_uc002pkw.1_5'Flank|PLEKHA4_uc010eml.2_Missense_Mutation_p.R117W	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	117	PH.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GTGAAGCGCCGCCCTCGGGGG	0.607													17	45					0	0	1	0	0	
PLEKHA4	57664	broad.mit.edu	37	19	49368824	49368824	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:49368824C>A	uc002pkx.2	-	3	679	c.128G>T	c.(127-129)AGA>ATA	p.R43I	PLEKHA4_uc010eml.2_Missense_Mutation_p.R43I	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	43						cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		CGCATTGCCTCTCTTCCCAAA	0.572													15	33					2.35188e-11	2.57851e-11	1	1	0	
TSKS	60385	broad.mit.edu	37	19	50251693	50251693	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:50251693C>A	uc002ppm.2	-	3	444	c.433G>T	c.(433-435)GAC>TAC	p.D145Y		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	145							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		GTGATGGAGTCTTTGGCGCGG	0.562													21	50					7.07758e-08	7.46774e-08	1	1	0	
IL4I1	259307	broad.mit.edu	37	19	50399224	50399224	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:50399224C>T	uc002pqt.1	-	3	178	c.100G>A	c.(100-102)GAG>AAG	p.E34K	IL4I1_uc002pqv.1_Missense_Mutation_p.E43K|IL4I1_uc010eno.1_Missense_Mutation_p.E42K|IL4I1_uc002pqw.1_Missense_Mutation_p.E42K|IL4I1_uc002pqu.1_Missense_Mutation_p.E56K	NM_152899	NP_690863	Q96RQ9	OXLA_HUMAN	interleukin 4 induced 1 isoform 1 precursor	34						lysosome	L-amino-acid oxidase activity			lung(1)|ovary(1)|prostate(1)	3		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00245)|OV - Ovarian serous cystadenocarcinoma(262;0.0169)		ATGCATTTCTCGAAGGGGTCT	0.458													35	85					0	0	1	0	0	
ZNF473	25888	broad.mit.edu	37	19	50549532	50549532	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:50549532G>A	uc002prn.2	+	5	2069	c.1832G>A	c.(1831-1833)AGA>AAA	p.R611K	ZNF473_uc002prm.2_Missense_Mutation_p.R611K|ZNF473_uc010ybo.1_Missense_Mutation_p.R599K	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	611	C2H2-type 12.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		CACCATCAAAGAATCCACTCT	0.502													28	54					0	0	1	0	0	
ZNF473	25888	broad.mit.edu	37	19	50550117	50550117	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:50550117G>T	uc002prn.2	+	5	2654	c.2417G>T	c.(2416-2418)AGA>ATA	p.R806I	ZNF473_uc002prm.2_Missense_Mutation_p.R806I|ZNF473_uc010ybo.1_Missense_Mutation_p.R794I	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	806	C2H2-type 18.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		CAGCACCAGAGAATTCACACA	0.502											OREG0025632	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	48					5.45024e-15	6.18484e-15	1	1	0	
MYH14	79784	broad.mit.edu	37	19	50720889	50720889	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:50720889C>T	uc002prr.1	+	3	470	c.423C>T	c.(421-423)TTC>TTT	p.F141F	MYH14_uc010enu.1_Silent_p.F141F|MYH14_uc002prq.1_Silent_p.F141F	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	141	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		CCGGCCTTTTCTGTGTGGTCA	0.547													46	113					0	0	1	0	0	
SPIB	6689	broad.mit.edu	37	19	50926154	50926154	+	Missense_Mutation	SNP	G	A	A	rs141734267		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:50926154G>A	uc002psd.2	+	4	224	c.199G>A	c.(199-201)GCT>ACT	p.A67T	SPIB_uc002pse.2_Missense_Mutation_p.A67T|SPIB_uc010ycc.1_Intron	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)	67					regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			lung(1)|kidney(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		GGCAGCAGCCGCTTTTAGCCA	0.682													106	33					0	0	1	0	0	
MYBPC2	4606	broad.mit.edu	37	19	50951486	50951486	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:50951486A>G	uc002psf.2	+	13	1362	c.1311A>G	c.(1309-1311)AAA>AAG	p.K437K		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	437	Ig-like C2-type 3.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		GACCAGAGAAACAGCTGGAGG	0.383													11	25					0	0	1	0	0	
LRRC4B	94030	broad.mit.edu	37	19	51022417	51022417	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:51022417G>A	uc002pss.2	-	3	690	c.553C>T	c.(553-555)CGG>TGG	p.R185W		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	185	LRR 5.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		TCCAGGCGCCGCAGCGAGGGC	0.652													22	37					0	0	1	0	0	
LRRC4B	94030	broad.mit.edu	37	19	51051822	51051822	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:51051822T>C	uc002pss.2	-	2	411	c.274A>G	c.(274-276)AAC>GAC	p.N92D		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	92	LRR 1.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		TCTTGCAGGTTCAGGTACCGC	0.657													3	0					0	0	1	0	0	
KLK3	354	broad.mit.edu	37	19	51361284	51361284	+	Splice_Site	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:51361284G>A	uc002pts.1	+	3	248	c.207_splice	c.e3-1	p.N69_splice	KLK3_uc010ycj.1_Splice_Site_p.N69_splice|KLK3_uc002ptr.1_Intron|KLK3_uc010eof.1_Splice_Site	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3						negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		TTCCTCCCCAGCAAAAGCGTG	0.532													23	30					0	0	1	0	0	
SIGLEC7	27036	broad.mit.edu	37	19	51647913	51647913	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:51647913G>A	uc002pvv.1	+	2	753	c.684G>A	c.(682-684)ACG>ACA	p.T228T	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	228	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		GCGTGACCACGAACAGGACCA	0.657													22	71					0	0	1	0	0	
SIGLEC10	89790	broad.mit.edu	37	19	51919253	51919253	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:51919253A>C	uc002pwo.2	-	5	1539	c.923T>G	c.(922-924)CTG>CGG	p.L308R	SIGLEC10_uc002pwp.2_Missense_Mutation_p.L250R|SIGLEC10_uc002pwq.2_Missense_Mutation_p.L250R|SIGLEC10_uc002pwr.2_Missense_Mutation_p.L308R|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Missense_Mutation_p.L260R|SIGLEC10_uc010eow.2_Missense_Mutation_p.L120R|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	308	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GGGCAGCTCCAGCCCCAGGGG	0.672													47	20					0	0	1	0	0	
SIGLEC12	89858	broad.mit.edu	37	19	52000207	52000207	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52000207G>A	uc002pwx.1	-	7	1582	c.1526C>T	c.(1525-1527)TCG>TTG	p.S509L	SIGLEC12_uc002pww.1_Missense_Mutation_p.S391L|SIGLEC12_uc010eoy.1_Missense_Mutation_p.S236L	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	509	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TGGCCTTGCCGATTTCTTCCT	0.582													56	30					0	0	1	0	0	
SIGLEC5	8778	broad.mit.edu	37	19	52130481	52130481	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52130481C>T	uc002pxe.2	-	7	1442	c.1303G>A	c.(1303-1305)GGA>AGA	p.G435R		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	435	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		GGAACCACTCCTGTCCCGAGG	0.547													12	33					0	0	1	0	0	
FPR1	2357	broad.mit.edu	37	19	52249296	52249296	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52249296C>T	uc002pxq.2	-	2	1047	c.952G>A	c.(952-954)GCC>ACC	p.A318T		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	318	Cytoplasmic (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	TCCAGACTGGCGGGAAGGGCG	0.562													44	81					0	0	1	0	0	
FPR1	2357	broad.mit.edu	37	19	52250104	52250104	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52250104G>A	uc002pxq.2	-	2	239	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	48	Helical; Name=1; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	CAGCCACCCAGATCACAAGCC	0.522													58	21					0	0	1	0	0	
ZNF577	84765	broad.mit.edu	37	19	52376895	52376895	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52376895T>C	uc010yde.1	-	7	739	c.348A>G	c.(346-348)AGA>AGG	p.R116R	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Intron|ZNF577_uc002pxv.2_Silent_p.R109R|ZNF577_uc002pxw.2_Intron	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		GGAGGCATGATCTCCCATATC	0.388													43	28					0	0	1	0	0	
ZNF613	79898	broad.mit.edu	37	19	52447723	52447723	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52447723G>A	uc002pxz.1	+	6	1010	c.587G>A	c.(586-588)CGA>CAA	p.R196Q	ZNF613_uc002pya.1_Missense_Mutation_p.R160Q	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		AAGCATCAGCGAACTCAAAAC	0.418													206	97					0	0	1	0	0	
ZNF432	9668	broad.mit.edu	37	19	52537131	52537131	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52537131C>A	uc002pyk.2	-	5	2119	c.1801G>T	c.(1801-1803)GAA>TAA	p.E601*		NM_014650	NP_055465	O94892	ZN432_HUMAN	zinc finger protein 432	601	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|pancreas(1)	3		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.0054)|OV - Ovarian serous cystadenocarcinoma(262;0.0182)		TTACCACATTCATTACATCCA	0.388													44	105					5.20837e-25	6.26994e-25	1	1	0	
ZNF841	284371	broad.mit.edu	37	19	52568865	52568865	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52568865C>A	uc002pyl.1	-	5	2474	c.1922G>T	c.(1921-1923)AGA>ATA	p.R641I	ZNF841_uc010ydh.1_Missense_Mutation_p.R757I|ZNF841_uc010epk.1_Intron	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	641	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTATGAATTCTCCGATGCCT	0.448													19	8					6.94344e-10	7.49515e-10	1	1	0	
ZNF841	284371	broad.mit.edu	37	19	52570041	52570041	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52570041C>A	uc002pyl.1	-	5	1298	c.746G>T	c.(745-747)AGA>ATA	p.R249I	ZNF841_uc010ydh.1_Missense_Mutation_p.R365I|ZNF841_uc010epk.1_Missense_Mutation_p.R249I	NM_001136499	NP_001129971	Q6ZN19	ZN841_HUMAN	zinc finger protein 841	249	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTATGAATTCTCTGATGAAC	0.413													13	22					3.27435e-08	3.46512e-08	1	1	0	
ZNF616	90317	broad.mit.edu	37	19	52618189	52618189	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52618189T>G	uc002pym.2	-	4	2511	c.2228A>C	c.(2227-2229)AAA>ACA	p.K743T	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	743					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		TTTATAAGGTTTTTTGCCAGA	0.393													97	43					0	0	1	0	0	
ZNF616	90317	broad.mit.edu	37	19	52619990	52619990	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52619990T>G	uc002pym.2	-	4	710	c.427A>C	c.(427-429)AAC>CAC	p.N143H	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	143					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		GACTCAAAGTTTGATGTAAGC	0.383													115	60					0	0	1	0	0	
PPP2R1A	5518	broad.mit.edu	37	19	52716217	52716217	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52716217C>T	uc002pyp.2	+	6	820	c.661C>T	c.(661-663)CGG>TGG	p.R221W	PPP2R1A_uc010ydk.1_Missense_Mutation_p.R166W|PPP2R1A_uc010epm.1_Missense_Mutation_p.R261W|PPP2R1A_uc002pyq.2_Missense_Mutation_p.R42W	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	221	PP2A subunit B binding.|SV40 small T antigen binding.|HEAT 6.|Polyoma small and medium T antigens Binding.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		GGACTCGGTGCGGCTGCTGGC	0.642			Mis		clear cell ovarian carcinoma								58	21					0	0	1	0	0	
ZNF766	90321	broad.mit.edu	37	19	52785394	52785394	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52785394G>T	uc002pyr.1	+	2	92	c.49G>T	c.(49-51)GAA>TAA	p.E17*	ZNF766_uc002pys.1_Nonsense_Mutation_p.E17*|ZNF766_uc002pyt.1_Nonsense_Mutation_p.E32*	NM_001010851	NP_001010851	Q5HY98	ZN766_HUMAN	zinc finger protein 766	17	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00236)|OV - Ovarian serous cystadenocarcinoma(262;0.00871)		CGTGGCCATAGAATTCTCTCA	0.453													162	90					4.48428e-77	5.60158e-77	1	1	0	
ZNF480	147657	broad.mit.edu	37	19	52825331	52825331	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52825331A>G	uc010ydl.1	+	5	898	c.828A>G	c.(826-828)CGA>CGG	p.R276R	ZNF480_uc002pyv.2_Silent_p.R199R|ZNF480_uc010ydm.1_Silent_p.R233R|ZNF480_uc010epn.2_Silent_p.R107R|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	276	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		ACTTTGCACGACATCAAAGAA	0.353													35	15					0	0	1	0	0	
ZNF610	162963	broad.mit.edu	37	19	52856965	52856965	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:52856965G>A	uc002pyx.3	+	4	500	c.94G>A	c.(94-96)GAA>AAA	p.E32K	ZNF610_uc002pyy.3_Missense_Mutation_p.E32K|ZNF610_uc002pyz.3_Missense_Mutation_p.E32K|ZNF610_uc002pza.2_Missense_Mutation_p.E32K	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	32	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		CGTGGCCATCGAATTCTCTCA	0.438													82	26					0	0	1	0	0	
ZNF578	147660	broad.mit.edu	37	19	53013860	53013860	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53013860T>C	uc002pzp.3	+	6	470	c.226T>C	c.(226-228)TCA>CCA	p.S76P		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:Variant_position_missing_in_Q96N58_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		GGAGGTCTTGTCAACAGGGCA	0.383													111	73					0	0	1	0	0	
ZNF578	147660	broad.mit.edu	37	19	53014974	53014974	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53014974G>C	uc002pzp.3	+	6	1584	c.1340G>C	c.(1339-1341)AGA>ACA	p.R447T		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	222	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		CGTCATCATAGACTTCATACT	0.383													65	26					0	0	1	0	0	
ZNF701	55762	broad.mit.edu	37	19	53086082	53086082	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53086082A>C	uc002pzs.1	+	4	897	c.770A>C	c.(769-771)TAC>TCC	p.Y257S	ZNF701_uc010ydn.1_Missense_Mutation_p.Y323S	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	257					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		CAGAAGCGATACCTTGCATGC	0.403													28	52					0	0	1	0	0	
ZNF701	55762	broad.mit.edu	37	19	53086702	53086702	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53086702A>C	uc002pzs.1	+	4	1517	c.1390A>C	c.(1390-1392)AAA>CAA	p.K464Q	ZNF701_uc010ydn.1_Missense_Mutation_p.K530Q	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	464					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		TACTGGAAAGAAATCTTAGAA	0.348													29	13					0	0	1	0	0	
ZNF816A	125893	broad.mit.edu	37	19	53453915	53453915	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53453915A>G	uc002qal.1	-	5	1414	c.1113T>C	c.(1111-1113)TGT>TGC	p.C371C	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Silent_p.C355C	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	371	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		CACACTCATTACACTTGTAAG	0.393													74	154					0	0	1	0	0	
ZNF816A	125893	broad.mit.edu	37	19	53454606	53454606	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53454606C>T	uc002qal.1	-	5	723	c.422G>A	c.(421-423)CGA>CAA	p.R141Q	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.R125Q	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	141					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		GTGATCACTTCGGTCTGTACT	0.408													135	206					0	0	1	0	0	
ZNF347	84671	broad.mit.edu	37	19	53644231	53644231	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53644231C>T	uc002qbb.1	-	5	1919	c.1850G>A	c.(1849-1851)CGA>CAA	p.R617Q	ZNF347_uc010eql.1_Missense_Mutation_p.R618Q|ZNF347_uc002qbc.1_Missense_Mutation_p.R618Q	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	617	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		AGTATGAATTCGCTGATGCCT	0.393													110	51					0	0	1	0	0	
ZNF347	84671	broad.mit.edu	37	19	53645327	53645327	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53645327G>A	uc002qbb.1	-	5	823	c.754C>T	c.(754-756)CAA>TAA	p.Q252*	ZNF347_uc010eql.1_Nonsense_Mutation_p.Q253*|ZNF347_uc002qbc.1_Nonsense_Mutation_p.Q253*	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	252					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		TTTGCTTTTTGCCCCTGTGTG	0.368													104	48					0	0	1	0	0	
ZNF665	79788	broad.mit.edu	37	19	53668755	53668755	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53668755G>A	uc010eqm.1	-	4	1088	c.988C>T	c.(988-990)CGC>TGC	p.R330C		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	265	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		AGGCTTGAGCGAACACTAAAG	0.428													93	30					0	0	1	0	0	
ZNF665	79788	broad.mit.edu	37	19	53668977	53668977	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53668977G>T	uc010eqm.1	-	4	866	c.766C>A	c.(766-768)CAT>AAT	p.H256N		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	191	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TCTCCAGTATGAATTCTCTGA	0.398													50	99					5.34276e-22	6.35699e-22	1	1	0	
VN1R2	317701	broad.mit.edu	37	19	53762651	53762651	+	Silent	SNP	C	T	T	rs151062632	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53762651C>T	uc002qbi.2	+	1	1107	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	341	Extracellular (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		TAGCTCTCTTCGATAATTCCA	0.463													68	125					0	0	1	0	0	
BIRC8	112401	broad.mit.edu	37	19	53793036	53793036	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53793036C>T	uc002qbk.2	-	1	1840	c.592G>A	c.(592-594)GCT>ACT	p.A198T		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	198	RING-type.				apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		AAAACAACAGCGATATGTCTG	0.443													91	37					0	0	1	0	0	
ZNF761	388561	broad.mit.edu	37	19	53958094	53958094	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53958094A>G	uc010eqp.2	+	7	791	c.333A>G	c.(331-333)GCA>GCG	p.A111A	ZNF761_uc010ydy.1_Silent_p.A57A|ZNF761_uc002qbt.1_Silent_p.A57A	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	111					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		GCCATGAAGCACCCATGACAA	0.353													85	59					0	0	1	0	0	
ZNF813	126017	broad.mit.edu	37	19	53994839	53994839	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:53994839T>G	uc002qbu.2	+	4	1481	c.1353T>G	c.(1351-1353)AAT>AAG	p.N451K	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	451	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		TCAGTCGAAATTCAGCCCTTG	0.403													51	24					0	0	1	0	0	
MIR520A	574467	broad.mit.edu	37	19	54194135	54194135	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:54194135C>A	hsa-mir-520a|MI0003149	+			c.1C>A																				0						GCAAGAAGATCTCAGGCTGTG	0.438													68	146					2.97807e-44	3.69754e-44	1	1	0	
CACNG7	59284	broad.mit.edu	37	19	54444771	54444771	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:54444771G>A	uc002qcr.1	+	4	487	c.472G>A	c.(472-474)GAC>AAC	p.D158N	CACNG7_uc010era.1_Missense_Mutation_p.D158N	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	158					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		CAGCATCAACGACGAGGTCAT	0.552													40	71					0	0	1	0	0	
LILRA6	79168	broad.mit.edu	37	19	54744915	54744915	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:54744915G>A	uc002qeu.1	-	5	871	c.747C>T	c.(745-747)GTC>GTT	p.V249V	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Intron|LILRA6_uc002qek.1_Silent_p.V249V|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Silent_p.V249V|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Silent_p.V249V|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Silent_p.V249V|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Intron|LILRA6_uc010yep.1_Silent_p.V249V|LILRA6_uc010yeq.1_Silent_p.V249V|LILRA6_uc002qet.3_RNA|LILRA6_uc002qev.1_Silent_p.V110V	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	249	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGTCGTAGCCGACATCAGAGC	0.642													52	94					0	0	1	0	0	
LILRB5	10990	broad.mit.edu	37	19	54759153	54759153	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:54759153G>A	uc002qex.2	-	5	1059	c.948C>T	c.(946-948)ATC>ATT	p.I316I	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Silent_p.I307I|LILRB5_uc002qey.2_Silent_p.I316I|LILRB5_uc002qez.2_Silent_p.I216I|LILRB5_uc002qfa.1_Silent_p.I206I|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	316	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCTCACCTGCGATCAGGATGT	0.682													5	61					0	0	1	0	0	
LILRB5	10990	broad.mit.edu	37	19	54760832	54760832	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:54760832A>G	uc002qex.2	-	2	173	c.62T>C	c.(61-63)GTG>GCG	p.V21A	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.V21A|LILRB5_uc002qey.2_Missense_Mutation_p.V21A|LILRB5_uc002qez.2_Missense_Mutation_p.V21A|LILRB5_uc002qfa.1_5'UTR|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	21					cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ACCTGCCTGCACGCAGGTCCT	0.647													15	49					0	0	1	0	0	
LILRB2	10288	broad.mit.edu	37	19	54782124	54782124	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:54782124G>A	uc002qfb.2	-	7	1514	c.1248C>T	c.(1246-1248)CTC>CTT	p.L416L	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.L416L|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.L416L|LILRB2_uc010yet.1_Silent_p.L300L|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	416	Extracellular (Potential).|Ig-like C2-type 4.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CTGAGACCACGAGCTCCAGGG	0.652													71	33					0	0	1	0	0	
LENG8	114823	broad.mit.edu	37	19	54962550	54962550	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:54962550G>A	uc002qfv.1	+	2	173	c.29G>A	c.(28-30)AGC>AAC	p.S10N	LENG8_uc002qfw.2_Missense_Mutation_p.S10N			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	10							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		GATCAACGTAGCACAGATTGG	0.582													22	68					0	0	1	0	0	
LILRB1	10859	broad.mit.edu	37	19	55146726	55146726	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55146726G>A	uc002qgj.2	+	13	1916	c.1576G>A	c.(1576-1578)GAT>AAT	p.D526N	LILRB1_uc010erp.1_Missense_Mutation_p.D141N|LILRB1_uc002qgl.2_Missense_Mutation_p.D526N|LILRB1_uc002qgk.2_Missense_Mutation_p.D527N|LILRB1_uc002qgm.2_Missense_Mutation_p.D527N|LILRB1_uc010erq.2_Missense_Mutation_p.D510N|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	526	Cytoplasmic (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CCCAGCTGCCGATGCCCAGGA	0.607										HNSCC(37;0.09)			71	32					0	0	1	0	0	
LILRB4	11006	broad.mit.edu	37	19	55176585	55176585	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55176585C>T	uc002qgp.2	+	6	1073	c.711C>T	c.(709-711)GGC>GGT	p.G237G	LILRB4_uc002qgq.2_Silent_p.G237G|LILRB4_uc010ers.1_3'UTR|LILRB4_uc002qgr.2_Silent_p.G278G|LILRB4_uc010ert.2_Silent_p.G278G|LILRB4_uc010eru.2_Silent_p.G266G	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	237	Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		ACCCAGCAGGCCCTGAGGACC	0.488													9	6					0	0	1	0	0	
KIR3DL1	3811	broad.mit.edu	37	19	55331352	55331352	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55331352C>A	uc002qhk.3	+	4	603	c.540C>A	c.(538-540)TTC>TTA	p.F180L	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Missense_Mutation_p.F122L|KIR3DL1_uc010esf.2_Missense_Mutation_p.F85L|KIR3DL1_uc010yfo.1_Missense_Mutation_p.F122L|KIR3DL1_uc002qhl.3_Missense_Mutation_p.F180L	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	180	Extracellular (Potential).|Ig-like C2-type 2.				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		AGGCCAATTTCTCCATCGGTC	0.527													126	238					7.87546e-53	9.81079e-53	1	1	0	
KIR3DL1	3811	broad.mit.edu	37	19	55341405	55341405	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55341405G>A	uc002qhk.3	+	8	1191	c.1128G>A	c.(1126-1128)GAG>GAA	p.E376E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Silent_p.E301E|KIR3DL1_uc010esf.2_Silent_p.E281E|KIR3DL1_uc010yfo.1_Silent_p.E318E|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_5'Flank|KIR2DS4_uc002qhm.1_5'Flank	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	376	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		TGGACCAAGAGCCTGCAGGGA	0.527													130	70					0	0	1	0	0	
KIR3DL2	3812	broad.mit.edu	37	19	55363593	55363593	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55363593T>G	uc002qho.3	+	3	244	c.211T>G	c.(211-213)TTC>GTC	p.F71V	KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc002qhn.1_Intron|KIR3DL2_uc010esh.2_Missense_Mutation_p.F71V	NM_006737	NP_006728	P43630	KI3L2_HUMAN	killer cell immunoglobulin-like receptor, three	71	Extracellular (Potential).|Ig-like C2-type 1.				cellular defense response|regulation of immune response	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0192)		CGTTCCCATCTTCCACGGCAG	0.542													22	42					0	0	1	0	0	
PPP1R12C	54776	broad.mit.edu	37	19	55607700	55607700	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55607700G>A	uc002qix.2	-	7	971	c.955C>T	c.(955-957)CGG>TGG	p.R319W	PPP1R12C_uc010yfs.1_Missense_Mutation_p.R245W|PPP1R12C_uc002qiy.2_Missense_Mutation_p.R319W	NM_017607	NP_060077	Q9BZL4	PP12C_HUMAN	protein phosphatase 1, regulatory subunit 12C	319	Potential.					cytoplasm				ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		TTTTGGTTCCGAAGCTGCAAG	0.637													59	94					0	0	1	0	0	
TNNT1	7138	broad.mit.edu	37	19	55652593	55652593	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55652593C>A	uc002qjb.3	-	8	359	c.270G>T	c.(268-270)AAG>AAT	p.K90N	TNNT1_uc002qiz.3_Missense_Mutation_p.K20N|TNNT1_uc002qja.3_Missense_Mutation_p.K20N|TNNT1_uc002qjc.3_Missense_Mutation_p.K90N|TNNT1_uc002qje.3_Missense_Mutation_p.K79N|TNNT1_uc002qjd.3_Missense_Mutation_p.K79N|TNNT1_uc002qjf.2_Missense_Mutation_p.K86N	NM_003283	NP_003274	P13805	TNNT1_HUMAN	troponin T1, skeletal, slow isoform a	90					muscle filament sliding|negative regulation of muscle contraction	cytosol|troponin complex	tropomyosin binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.047)		CTTCCTCCTTCTTCCGCTGCT	0.592											OREG0025677	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	54					0.000184323	0.000188324	1	1	0	
SYT5	6861	broad.mit.edu	37	19	55686654	55686654	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55686654G>A	uc002qjm.1	-	5	1654	c.594C>T	c.(592-594)TTC>TTT	p.F198F	SYT5_uc002qjp.2_Silent_p.F195F|SYT5_uc002qjn.1_Silent_p.F198F|SYT5_uc002qjo.1_Silent_p.F198F	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V	198	Cytoplasmic (Potential).|C2 1.	Calcium 1; via carbonyl oxygen (By similarity).			energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		AGAAGCGGTCGAAGTCGTACA	0.652													15	6					0	0	1	0	0	
BRSK1	84446	broad.mit.edu	37	19	55805594	55805594	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55805594T>G	uc002qkg.2	+	6	865	c.588T>G	c.(586-588)TAT>TAG	p.Y196*	BRSK1_uc002qkf.2_Nonsense_Mutation_p.Y212*	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	196	Protein kinase.				establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		CCCCCCATTATGCGTGTCCAG	0.617													28	55					0	0	1	0	0	
TMEM150B	284417	broad.mit.edu	37	19	55828275	55828275	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:55828275G>A	uc010esw.1	-	7	557	c.384C>T	c.(382-384)AAC>AAT	p.N128N	TMEM150B_uc010yfu.1_Silent_p.N128N|TMEM150B_uc010yfv.1_RNA|TMEM150B_uc010yfw.1_RNA	NM_001085488	NP_001078957	A6NC51	T150B_HUMAN	transmembrane protein 150B precursor	128	Helical; (Potential).					integral to membrane					0						AGAAGTAGACGTTACCCAAGA	0.632													6	16					0	0	1	0	0	
NLRP9	338321	broad.mit.edu	37	19	56244828	56244828	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:56244828G>T	uc002qly.2	-	2	397	c.369C>A	c.(367-369)TTC>TTA	p.F123L		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	123						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TTTCTTTGTAGAAATGCTCAG	0.408													74	26					1.79293e-35	2.21234e-35	1	1	0	
NLRP11	204801	broad.mit.edu	37	19	56321612	56321612	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:56321612G>A	uc010ygf.1	-	5	1075	c.364C>T	c.(364-366)CGT>TGT	p.R122C	NLRP11_uc002qlz.2_Missense_Mutation_p.R23C|NLRP11_uc002qmb.2_Missense_Mutation_p.R23C|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	122							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GAAACGTCACGAAAAAATTTA	0.383													17	38					0	0	1	0	0	
NLRP13	126204	broad.mit.edu	37	19	56407479	56407479	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:56407479C>T	uc010ygg.1	-	11	2989	c.2964G>A	c.(2962-2964)GCG>GCA	p.A988A		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	988							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GATTGCATTTCGCCAACCTAG	0.458													69	39					0	0	1	0	0	
NLRP13	126204	broad.mit.edu	37	19	56423490	56423490	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:56423490C>A	uc010ygg.1	-	5	1718	c.1693G>T	c.(1693-1695)GAG>TAG	p.E565*		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	565							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		ATCTTCATCTCTTGTGGCTTT	0.433													90	46					2.75442e-36	3.40335e-36	1	1	0	
NLRP8	126205	broad.mit.edu	37	19	56459552	56459552	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:56459552G>A	uc002qmh.2	+	1	355	c.284G>A	c.(283-285)CGA>CAA	p.R95Q	NLRP8_uc010etg.2_Missense_Mutation_p.R95Q	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	95	DAPIN.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTCCCTGGACGACGCGCTTGG	0.507													26	39					0	0	1	0	0	
NLRP8	126205	broad.mit.edu	37	19	56467001	56467001	+	Missense_Mutation	SNP	G	A	A	rs75471108	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:56467001G>A	uc002qmh.2	+	3	1648	c.1577G>A	c.(1576-1578)AGA>AAA	p.R526K	NLRP8_uc010etg.2_Missense_Mutation_p.R526K	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	526	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTCCCACAAAGACTCAAAAAT	0.438													127	66					0	0	1	0	0	
ZSCAN5B	342933	broad.mit.edu	37	19	56703252	56703252	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:56703252G>T	uc010ygh.1	-	2	555	c.555C>A	c.(553-555)ATC>ATA	p.I185I		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	185					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CCCTGGGCAGGATCTGCTGCT	0.627													23	41					7.76418e-22	9.2287e-22	1	1	0	
ZNF583	147949	broad.mit.edu	37	19	56935142	56935142	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:56935142G>T	uc010ygl.1	+	5	1280	c.1115G>T	c.(1114-1116)AGA>ATA	p.R372I	ZNF583_uc002qnc.2_Missense_Mutation_p.R372I|ZNF583_uc010ygm.1_Missense_Mutation_p.R372I	NM_001159860	NP_001153332	Q96ND8	ZN583_HUMAN	zinc finger protein 583	372	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0564)		GTACATCAGAGAATTCATACT	0.433													37	74					2.05212e-20	2.42303e-20	1	1	0	
ZNF667	63934	broad.mit.edu	37	19	56953546	56953546	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:56953546T>G	uc002qnd.2	-	5	980	c.818A>C	c.(817-819)AAA>ACA	p.K273T	ZNF667_uc010etl.2_Missense_Mutation_p.K55T|ZNF667_uc002qne.2_Missense_Mutation_p.K273T|ZNF667_uc010etm.2_Missense_Mutation_p.K216T	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	273	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		ATTGTGAATTTTCTTATGAAG	0.343													37	69					0	0	1	0	0	
ZFP28	140612	broad.mit.edu	37	19	57059234	57059234	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57059234G>A	uc002qnj.2	+	4	557	c.486G>A	c.(484-486)TGG>TGA	p.W162*	ZFP28_uc002qni.2_Nonsense_Mutation_p.W162*|uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	162	KRAB 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		AAGAGCCTTGGACAGTGAAGC	0.502													29	58					0	0	1	0	0	
ZFP28	140612	broad.mit.edu	37	19	57066652	57066652	+	Missense_Mutation	SNP	G	A	A	rs150968564		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57066652G>A	uc002qnj.2	+	8	2569	c.2498G>A	c.(2497-2499)CGA>CAA	p.R833Q	uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	833	C2H2-type 15; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		CATCATCAGCGAATTCATACT	0.423													129	229					0	0	1	0	0	
ZNF470	388566	broad.mit.edu	37	19	57088137	57088137	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57088137G>T	uc002qnl.3	+	6	1016	c.340G>T	c.(340-342)GAA>TAA	p.E114*	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	114					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		TATTTATGAAGAAAAATTACC	0.338													35	49					2.47316e-13	2.76362e-13	1	1	0	
ZNF470	388566	broad.mit.edu	37	19	57089047	57089047	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57089047G>T	uc002qnl.3	+	6	1926	c.1250G>T	c.(1249-1251)AGA>ATA	p.R417I	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	417	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		CAGCATAAGAGAACTCATACT	0.418													15	86					1.52009e-12	1.68689e-12	1	1	0	
ZNF470	388566	broad.mit.edu	37	19	57089613	57089613	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57089613G>A	uc002qnl.3	+	6	2492	c.1816G>A	c.(1816-1818)GCA>ACA	p.A606T	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	606	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		CAGGCAGAGGGCATCCTTGAT	0.438													25	44					0	0	1	0	0	
ZNF835	90485	broad.mit.edu	37	19	57175095	57175095	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57175095C>T	uc010ygo.1	-	2	1538	c.1538G>A	c.(1537-1539)CGA>CAA	p.R513Q	ZNF835_uc010ygn.1_Missense_Mutation_p.R491Q	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						CCTCTGGTGTCGGATGAGCGC	0.627													76	165					0	0	1	0	0	
ZIM2	23619	broad.mit.edu	37	19	57301310	57301310	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57301310G>A	uc002qnr.2	-	8	789	c.407C>T	c.(406-408)GCT>GTT	p.A136V	uc010ygp.1_RNA|uc002qnp.1_RNA|ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnq.2_Missense_Mutation_p.A136V|ZIM2_uc010etp.2_Missense_Mutation_p.A136V|ZIM2_uc010ygs.1_Missense_Mutation_p.A136V	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	136					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		AGAGTCCTGAGCAAGGAAACC	0.522													11	10					0	0	1	0	0	
PEG3	5178	broad.mit.edu	37	19	57329140	57329140	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57329140C>A	uc002qnu.2	-	6	1187	c.836G>T	c.(835-837)AGA>ATA	p.R279I	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Intron|PEG3_uc002qnv.2_Missense_Mutation_p.R279I|PEG3_uc002qnw.2_Missense_Mutation_p.R155I|PEG3_uc002qnx.2_Missense_Mutation_p.R153I|PEG3_uc010etr.2_Missense_Mutation_p.R279I	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	279					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GTAGGCACTTCTCTTGGATCT	0.517													28	9					7.26314e-15	8.22614e-15	1	1	0	
USP29	57663	broad.mit.edu	37	19	57641212	57641212	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57641212A>C	uc002qny.2	+	4	1525	c.1169A>C	c.(1168-1170)AAA>ACA	p.K390T		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	390					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GACATGGAAAAATTAAATGCC	0.398													43	72					0	0	1	0	0	
ZNF805	390980	broad.mit.edu	37	19	57765821	57765821	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57765821G>A	uc010ygt.1	+	4	1841	c.1634G>A	c.(1633-1635)GGA>GAA	p.G545E	ZNF805_uc010ygu.1_Missense_Mutation_p.G412E	NM_001023563	NP_001018857	Q5CZA5	ZN805_HUMAN	zinc finger protein 805 isoform 1	545	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTGAATGTGGAAAGGCCTTC	0.473													26	64					0	0	1	0	0	
ZNF805	390980	broad.mit.edu	37	19	57765835	57765835	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57765835C>T	uc010ygt.1	+	4	1855	c.1648C>T	c.(1648-1650)CGC>TGC	p.R550C	ZNF805_uc010ygu.1_Missense_Mutation_p.R417C	NM_001023563	NP_001018857	Q5CZA5	ZN805_HUMAN	zinc finger protein 805 isoform 1	550	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGCCTTCAGTCGCAGCTCGTC	0.483													54	31					0	0	1	0	0	
ZNF460	10794	broad.mit.edu	37	19	57802298	57802298	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57802298C>T	uc002qog.2	+	3	711	c.389C>T	c.(388-390)GCG>GTG	p.A130V	ZNF460_uc010ygv.1_Missense_Mutation_p.A89V	NM_006635	NP_006626	Q14592	ZN460_HUMAN	zinc finger protein 460	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GAAGGTTTGGCGACAGCTGAT	0.448													55	101					0	0	1	0	0	
ZNF17	7565	broad.mit.edu	37	19	57932413	57932413	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57932413G>T	uc002qoo.1	+	3	1784	c.1553G>T	c.(1552-1554)AGA>ATA	p.R518I	ZNF547_uc002qpm.3_Intron|ZNF17_uc002qop.1_Missense_Mutation_p.R520I	NM_006959	NP_008890	P17021	ZNF17_HUMAN	zinc finger protein 17	518	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0234)|GBM - Glioblastoma multiforme(193;0.000426)|Lung(386;0.176)		ACACATCAGAGAATTCACACT	0.408													96	49					1.80868e-48	2.24938e-48	1	1	0	
ZNF749	388567	broad.mit.edu	37	19	57956643	57956643	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:57956643G>A	uc002qoq.2	+	3	2381	c.2127G>A	c.(2125-2127)TCG>TCA	p.S709S	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	709	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		GGACTAAATCGAGCCTTATTA	0.393													34	59					0	0	1	0	0	
ZNF419	79744	broad.mit.edu	37	19	58004329	58004329	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58004329A>C	uc002qov.2	+	5	644	c.404A>C	c.(403-405)AAA>ACA	p.K135T	ZNF547_uc002qpm.3_Intron|ZNF419_uc010ety.1_Missense_Mutation_p.K136T|ZNF419_uc010etz.1_Missense_Mutation_p.K123T|ZNF419_uc010eua.1_Missense_Mutation_p.K122T|ZNF419_uc002qow.2_Missense_Mutation_p.K103T|ZNF419_uc010eub.1_Missense_Mutation_p.K90T|ZNF419_uc010euc.1_Missense_Mutation_p.K89T	NM_024691	NP_078967	Q96HQ0	ZN419_HUMAN	zinc finger protein 419 isoform 2	135					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0252)|Lung(386;0.171)		TGTGGAGAGAAACCCTTAAAA	0.522													33	20					0	0	1	0	0	
ZNF773	374928	broad.mit.edu	37	19	58018216	58018216	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58018216C>A	uc002qox.2	+	4	893	c.753C>A	c.(751-753)GAC>GAA	p.D251E	ZNF547_uc002qpm.3_Intron|ZNF773_uc002qoy.2_Missense_Mutation_p.D250E|ZNF773_uc002qoz.2_Intron	NM_198542	NP_940944	Q6PK81	ZN773_HUMAN	zinc finger protein 773	251	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)		GGTGTAGTGACTGTGGAAAAT	0.408													52	61					1.4374e-25	1.73394e-25	1	1	0	
ZIK1	284307	broad.mit.edu	37	19	58102074	58102074	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58102074G>A	uc002qpg.2	+	4	992	c.895G>A	c.(895-897)GAA>AAA	p.E299K	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Missense_Mutation_p.E244K|ZIK1_uc002qpi.2_Missense_Mutation_p.E286K|ZIK1_uc002qpj.2_Missense_Mutation_p.E196K	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	299	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TGAGTGCAGCGAATGTGGAAA	0.458													32	56					0	0	1	0	0	
ZNF530	348327	broad.mit.edu	37	19	58115765	58115765	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58115765G>A	uc002qpk.2	+	2	371	c.151G>A	c.(151-153)GCA>ACA	p.A51T	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	51	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TGCAGTTATGGCATCCCTAGG	0.537													72	150					0	0	1	0	0	
ZSCAN4	201516	broad.mit.edu	37	19	58187817	58187817	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58187817G>A	uc002qpu.2	+	3	1001	c.304G>A	c.(304-306)GCC>ACC	p.A102T		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	102	SCAN box.				telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CAATGACAAAGCCAGTGTGAA	0.423													73	32					0	0	1	0	0	
ZNF671	79891	broad.mit.edu	37	19	58232204	58232204	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58232204C>T	uc002qpz.3	-	4	1349	c.1250G>A	c.(1249-1251)CGA>CAA	p.R417Q	ZNF776_uc002qpx.2_Intron|ZNF671_uc010eug.2_Missense_Mutation_p.R340Q|ZNF671_uc010yhf.1_Missense_Mutation_p.R319Q	NM_024833	NP_079109	Q8TAW3	ZN671_HUMAN	zinc finger protein 671	417	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		AGTGTGAGTTCGTTGGTGCAG	0.488													61	31					0	0	1	0	0	
ZNF671	79891	broad.mit.edu	37	19	58234635	58234635	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58234635C>A	uc002qpz.3	-	2	311	c.212G>T	c.(211-213)AGA>ATA	p.R71I	ZNF776_uc002qpx.2_Intron|ZNF671_uc010eug.2_5'UTR|ZNF671_uc010yhf.1_Intron	NM_024833	NP_079109	Q8TAW3	ZN671_HUMAN	zinc finger protein 671	71	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GTACAAAAGTCTCTGAGCATC	0.463													116	55					2.56817e-43	3.18764e-43	1	1	0	
ZNF814	730051	broad.mit.edu	37	19	58386057	58386057	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58386057C>T	uc002qqo.2	-	3	973	c.701G>A	c.(700-702)AGA>AAA	p.R234K	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	234					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						AGTGAGCAGTCTCTGGTGCTG	0.438													6	9					0	0	1	0	0	
ZNF418	147686	broad.mit.edu	37	19	58438323	58438323	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58438323C>T	uc002qqs.1	-	4	1518	c.1226G>A	c.(1225-1227)CGA>CAA	p.R409Q	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Missense_Mutation_p.R324Q	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	409	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		GTGTCCCTTTCGACTAAAAGA	0.443													78	149					0	0	1	0	0	
ZNF606	80095	broad.mit.edu	37	19	58489988	58489988	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58489988C>A	uc002qqw.2	-	7	2678	c.2060G>T	c.(2059-2061)AGA>ATA	p.R687I	ZNF606_uc010yhp.1_Missense_Mutation_p.R597I	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	687	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		GTTAAAGGATCTTTCACACTG	0.408													35	50					6.00712e-18	7.00105e-18	1	1	0	
ZNF606	80095	broad.mit.edu	37	19	58490033	58490033	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58490033C>A	uc002qqw.2	-	7	2633	c.2015G>T	c.(2014-2016)AGA>ATA	p.R672I	ZNF606_uc010yhp.1_Missense_Mutation_p.R582I	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	672	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		AGTGTGAATTCTCCGATGAGC	0.413													71	20					1.08321e-29	1.32225e-29	1	1	0	
ZSCAN18	65982	broad.mit.edu	37	19	58601494	58601494	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58601494G>T	uc002qri.2	-	2	450	c.141C>A	c.(139-141)TTC>TTA	p.F47L	ZSCAN18_uc002qrj.3_Missense_Mutation_p.F47L|ZSCAN18_uc010yhs.1_Intron|ZSCAN18_uc002qrh.2_Missense_Mutation_p.F47L|ZSCAN18_uc010yht.1_Missense_Mutation_p.F103L|ZSCAN18_uc002qrk.1_Missense_Mutation_p.F47L|ZSCAN18_uc002qrl.2_Missense_Mutation_p.F47L	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	47					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GCAGGCGGGAGAACTCCAGGT	0.687													46	23					1.02687e-29	1.25385e-29	1	1	0	
ZNF544	27300	broad.mit.edu	37	19	58773467	58773467	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58773467A>G	uc010euo.2	+	7	1969	c.1495A>G	c.(1495-1497)AAA>GAA	p.K499E	ZNF544_uc010yhw.1_Intron|ZNF544_uc010yhx.1_Missense_Mutation_p.K471E|ZNF544_uc010yhy.1_Missense_Mutation_p.K471E|ZNF544_uc002qrt.3_Missense_Mutation_p.K357E|ZNF544_uc002qru.3_Missense_Mutation_p.K357E|uc002qrx.1_Intron	NM_014480	NP_055295	Q6NX49	ZN544_HUMAN	zinc finger protein 544	499	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		all_cancers(17;4.17e-12)|all_epithelial(17;1.25e-08)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.17)|GBM - Glioblastoma multiforme(193;0.018)		TCAGTGTGGGAAATCTTTCAG	0.458													74	29					0	0	1	0	0	
ZNF132	7691	broad.mit.edu	37	19	58944990	58944990	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58944990G>A	uc002qst.3	-	3	2222	c.1821C>T	c.(1819-1821)TTC>TTT	p.F607F		NM_003433	NP_003424	P52740	ZN132_HUMAN	zinc finger protein 132	607	C2H2-type 15.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0171)|Lung(386;0.182)		TTCGGCTAAAGAATTTCCCAC	0.413													85	37					0	0	1	0	0	
ZNF132	7691	broad.mit.edu	37	19	58945795	58945795	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr19:58945795C>A	uc002qst.3	-	3	1417	c.1016G>T	c.(1015-1017)AGA>ATA	p.R339I		NM_003433	NP_003424	P52740	ZN132_HUMAN	zinc finger protein 132	339	C2H2-type 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0171)|Lung(386;0.182)		TGAGTGAATTCTCTGATGATG	0.408													57	21					9.77569e-14	1.09567e-13	1	1	0	
SNTG2	54221	broad.mit.edu	37	2	1093883	1093883	+	Missense_Mutation	SNP	G	A	A	rs138780480	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:1093883G>A	uc002qwq.2	+	3	340	c.212G>A	c.(211-213)CGC>CAC	p.R71H	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	71					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		GTTTTAAAGCGCAGAACTGTT	0.353													56	108					0	0	1	0	0	
SNTG2	54221	broad.mit.edu	37	2	1243521	1243521	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:1243521G>A	uc002qwq.2	+	11	989	c.861G>A	c.(859-861)GCG>GCA	p.A287A	SNTG2_uc010ewi.2_Silent_p.A160A	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	287					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		TGAAGATGGCGAACAAATGCT	0.488													7	13					0	0	1	0	0	
PXDN	7837	broad.mit.edu	37	2	1647288	1647288	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:1647288C>T	uc002qxa.2	-	19	3868	c.3804G>A	c.(3802-3804)ACG>ACA	p.T1268T		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1268					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TGGCCAGCGACGTCTGCTTGA	0.602													38	53					0	0	1	0	0	
PXDN	7837	broad.mit.edu	37	2	1652186	1652186	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:1652186G>A	uc002qxa.2	-	17	3430	c.3366C>T	c.(3364-3366)TTC>TTT	p.F1122F		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1122					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CCGCCACCCCGAACAGCCCCC	0.612													13	19					0	0	1	0	0	
PXDN	7837	broad.mit.edu	37	2	1680706	1680706	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:1680706G>A	uc002qxa.2	-	8	905	c.841C>T	c.(841-843)CGA>TGA	p.R281*	PXDN_uc002qxb.1_Nonsense_Mutation_p.R281*|PXDN_uc002qxc.1_Nonsense_Mutation_p.R98*	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	281	Ig-like C2-type 1.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CACTTGTTTCGCAGCCAGATG	0.582													4	13					0	0	1	0	0	
ALLC	55821	broad.mit.edu	37	2	3729284	3729284	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:3729284A>C	uc010ewt.2	+	6	520	c.359A>C	c.(358-360)GAG>GCG	p.E120A		NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	139							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		ACTCCTGAGGAGTTTGAAGCC	0.473										HNSCC(21;0.051)			3	12					0	0	1	0	0	
ALLC	55821	broad.mit.edu	37	2	3743399	3743399	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:3743399G>A	uc010ewt.2	+	8	765	c.604G>A	c.(604-606)GCT>ACT	p.A202T	ALLC_uc002qyf.2_5'UTR	NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	221							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		AGTGGCCATCGCTTTTGGGGG	0.438										HNSCC(21;0.051)			15	33					0	0	1	0	0	
RNF144A	9781	broad.mit.edu	37	2	7179884	7179884	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:7179884C>A	uc002qys.2	+	9	1314	c.872C>A	c.(871-873)CCC>CAC	p.P291H	RNF144A_uc002qyt.2_Missense_Mutation_p.P140H	NM_014746	NP_055561	P50876	R144A_HUMAN	ring finger protein 144	291						Golgi apparatus|integral to membrane	ligase activity|zinc ion binding			ovary(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;0.226)		OV - Ovarian serous cystadenocarcinoma(76;0.195)		GACCCGTTACCCACCTAGAGG	0.582													17	44					0.000566183	0.000576314	1	1	0	
TAF1B	9014	broad.mit.edu	37	2	10045058	10045058	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:10045058T>G	uc002qzz.2	+	9	978	c.878T>G	c.(877-879)TTT>TGT	p.F293C	TAF1B_uc010exc.2_Missense_Mutation_p.F293C|TAF1B_uc002qzy.3_Missense_Mutation_p.F293C|TAF1B_uc010yja.1_Missense_Mutation_p.F38C|TAF1B_uc010exd.2_Missense_Mutation_p.F38C	NM_005680	NP_005671	Q53T94	TAF1B_HUMAN	TBP-associated factor 1B	293					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)|pancreas(1)	3	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TTGCCTCGTTTTCCAGACATA	0.388													49	72					0	0	1	0	0	
GREB1	9687	broad.mit.edu	37	2	11696778	11696778	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:11696778G>A	uc002rbk.1	+	2	338	c.38G>A	c.(37-39)CGC>CAC	p.R13H	GREB1_uc002rbl.2_Missense_Mutation_p.R13H|GREB1_uc002rbm.2_Intron|GREB1_uc002rbn.1_Missense_Mutation_p.R13H	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	13						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		AAGACGACACGCTTTGAAGAG	0.517													36	77					0	0	1	0	0	
NTSR2	23620	broad.mit.edu	37	2	11800191	11800191	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:11800191C>T	uc002rbq.3	-	3	1041	c.967G>A	c.(967-969)GTA>ATA	p.V323I		NM_012344	NP_036476	O95665	NTR2_HUMAN	neurotensin receptor 2	323	Extracellular (Potential).				sensory perception	integral to plasma membrane					0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.129)|OV - Ovarian serous cystadenocarcinoma(76;0.24)	Levocabastine(DB01106)	TCATCAGGTACGTAGCAGTAC	0.602													29	56					0	0	1	0	0	
TRIB2	28951	broad.mit.edu	37	2	12863671	12863671	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:12863671G>A	uc002rbv.3	+	2	1992	c.556G>A	c.(556-558)GAA>AAA	p.E186K	TRIB2_uc010yjp.1_Missense_Mutation_p.E50K	NM_021643	NP_067675	Q92519	TRIB2_HUMAN	tribbles homolog 2	186	Protein kinase.				negative regulation of fat cell differentiation|negative regulation of interleukin-10 biosynthetic process|negative regulation of protein kinase activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|regulation of MAP kinase activity	cytoplasm|cytoskeleton|nucleus	ATP binding|protein kinase activity|protein kinase inhibitor activity|transcription factor binding|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			stomach(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					CTTTAAGGACGAAGAGAGGTA	0.532													26	44					0	0	1	0	0	
NBAS	51594	broad.mit.edu	37	2	15601451	15601451	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:15601451A>G	uc002rcc.1	-	21	2239	c.2213T>C	c.(2212-2214)GTA>GCA	p.V738A	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	738										ovary(2)|liver(1)|skin(1)	4						CAGGGCTTGTACATTACTTTC	0.373													24	51					0	0	1	0	0	
DDX1	1653	broad.mit.edu	37	2	15768807	15768807	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:15768807G>A	uc002rce.2	+	22	2093	c.1805G>A	c.(1804-1806)CGA>CAA	p.R602Q	DDX1_uc010yjq.1_Missense_Mutation_p.R510Q	NM_004939	NP_004930	Q92499	DDX1_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	602	Helicase C-terminal.|Necessary for interaction with replicase polyprotein 1ab nsp14 of IBV.|Necessary for interaction with HNRNPK.				DNA duplex unwinding|double-strand break repair|multicellular organismal development|regulation of transcription, DNA-dependent|regulation of translational initiation|spliceosome assembly|transcription, DNA-dependent	cleavage body|stress granule|tRNA-splicing ligase complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|DNA/RNA helicase activity|exonuclease activity|poly(A) RNA binding|protein binding|RNA helicase activity|transcription cofactor activity			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	all_epithelial(98;2.96e-07)|Acute lymphoblastic leukemia(84;4.24e-05)|Ovarian(717;0.0694)	GBM - Glioblastoma multiforme(3;0.00969)	Epithelial(75;4.35e-05)|OV - Ovarian serous cystadenocarcinoma(76;0.133)		TACGTACATCGAATTGGCAGA	0.323													15	24					0	0	1	0	0	
FAM49A	81553	broad.mit.edu	37	2	16745275	16745275	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:16745275C>T	uc010exm.1	-	4	428	c.280G>A	c.(280-282)GAG>AAG	p.E94K	FAM49A_uc002rck.1_Missense_Mutation_p.E94K	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	94						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			ATGGAAAACTCGTAAAATCTC	0.418													17	40					0	0	1	0	0	
SMC6	79677	broad.mit.edu	37	2	17927099	17927099	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:17927099T>C	uc002rco.2	-	3	411	c.115A>G	c.(115-117)ACT>GCT	p.T39A	SMC6_uc010exo.2_Missense_Mutation_p.T39A|SMC6_uc002rcn.2_Missense_Mutation_p.T39A|SMC6_uc002rcp.1_Missense_Mutation_p.T39A|SMC6_uc002rcq.2_Missense_Mutation_p.T39A|SMC6_uc002rcr.1_Missense_Mutation_p.T39A	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	39					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTTACCAAAGTAGTACCTTTA	0.308													11	35					0	0	1	0	0	
NT5C1B	93034	broad.mit.edu	37	2	18737024	18737024	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:18737024G>A	uc010exr.2	-	9	1490	c.1386C>T	c.(1384-1386)TGC>TGT	p.C462C	NT5C1B_uc002rcy.2_3'UTR|RDH14_uc002rcx.3_Silent_p.C148C	NM_033253	NP_150278	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 2	Error:Variant_position_missing_in_Q96P26_after_alignment					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				TCATGTAAGGGCACTGGAAGA	0.443													51	124					0	0	1	0	0	
WDR35	57539	broad.mit.edu	37	2	20135296	20135296	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:20135296A>G	uc002rdi.2	-	22	2624	c.2516T>C	c.(2515-2517)TTA>TCA	p.L839S	WDR35_uc002rdj.2_Missense_Mutation_p.L828S|WDR35_uc010ext.2_RNA|WDR35_uc002rdh.2_Missense_Mutation_p.L404S|WDR35_uc002rdk.3_Missense_Mutation_p.L404S	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	839										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATAATCCTCTAACATATAGTA	0.343													28	49					0	0	1	0	0	
APOB	338	broad.mit.edu	37	2	21225916	21225916	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:21225916G>A	uc002red.2	-	29	12506	c.12378C>T	c.(12376-12378)ATC>ATT	p.I4126I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4126					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACCTCACGTCGATATCATCAA	0.502													60	127					0	0	1	0	0	
APOB	338	broad.mit.edu	37	2	21229095	21229095	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:21229095T>G	uc002red.2	-	26	10773	c.10645A>C	c.(10645-10647)AAT>CAT	p.N3549H		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3549					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCAGCAAAATTTTCTTTTACT	0.453													40	67					0	0	1	0	0	
APOB	338	broad.mit.edu	37	2	21231795	21231795	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:21231795C>T	uc002red.2	-	26	8073	c.7945G>A	c.(7945-7947)GAA>AAA	p.E2649K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2649					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGGTAAATTCTGGTGTGGAA	0.353													75	165					0	0	1	0	0	
APOB	338	broad.mit.edu	37	2	21233570	21233570	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:21233570A>C	uc002red.2	-	26	6298	c.6170T>G	c.(6169-6171)TTT>TGT	p.F2057C		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2057	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATACTTTACAAAAGCAACAAT	0.358													41	76					0	0	1	0	0	
APOB	338	broad.mit.edu	37	2	21235442	21235442	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:21235442G>A	uc002red.2	-	26	4426	c.4298C>T	c.(4297-4299)TCG>TTG	p.S1433L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1433					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTGATATTCGAATCTAGAAA	0.368													29	52					0	0	1	0	0	
APOB	338	broad.mit.edu	37	2	21238325	21238325	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:21238325G>A	uc002red.2	-	22	3553	c.3425C>T	c.(3424-3426)TCG>TTG	p.S1142L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1142					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTGGCAGGCGACCAGTGGGC	0.483													32	85					0	0	1	0	0	
APOB	338	broad.mit.edu	37	2	21242777	21242777	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:21242777G>T	uc002red.2	-	19	2945	c.2817C>A	c.(2815-2817)GGC>GGA	p.G939G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	939	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTAATGTGTTGCTGGTGAAGA	0.453													24	51					6.21321e-17	7.16882e-17	1	1	0	
ATAD2B	54454	broad.mit.edu	37	2	24033263	24033263	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:24033263T>G	uc002rek.3	-	18	2671	c.2377A>C	c.(2377-2379)AGA>CGA	p.R793R	ATAD2B_uc010yki.1_RNA|ATAD2B_uc002rei.3_Silent_p.R38R|ATAD2B_uc002rej.3_5'UTR	NM_017552	NP_060022	Q9ULI0	ATD2B_HUMAN	ATPase family, AAA domain containing 2B	793							ATP binding|nucleoside-triphosphatase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACAGAGAATCTTTCTAGAGTG	0.478													21	48					0	0	1	0	0	
FKBP1B	2281	broad.mit.edu	37	2	24285954	24285954	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:24285954G>A	uc002rer.2	+	4	355	c.219G>A	c.(217-219)GCG>GCA	p.A73A	FKBP1B_uc002res.2_3'UTR|FKBP1B_uc002ret.2_RNA|FKBP1B_uc002reu.2_RNA	NM_004116	NP_004107	P68106	FKB1B_HUMAN	FK506 binding protein 1B, 12.6 kDa isoform a	73	PPIase FKBP-type.				'de novo' protein folding|negative regulation of heart rate|negative regulation of protein phosphatase type 2B activity|protein maturation by protein folding|protein refolding|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|regulation of ryanodine-sensitive calcium-release channel activity|response to redox state	calcium channel complex|sarcoplasmic reticulum membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|receptor binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCAGAGGGCGAAGCTGACCT	0.557													28	38					0	0	1	0	0	
NCOA1	8648	broad.mit.edu	37	2	24888773	24888773	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:24888773G>T	uc002rfk.2	+	4	503	c.245G>T	c.(244-246)AGA>ATA	p.R82I	NCOA1_uc010eye.2_Missense_Mutation_p.R82I|NCOA1_uc002rfi.2_Intron|NCOA1_uc002rfj.2_Missense_Mutation_p.R82I|NCOA1_uc002rfl.2_Missense_Mutation_p.R82I	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	82									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTAATGAAGAGAATGGAACAA	0.303			T	PAX3	alveolar rhadomyosarcoma								26	71					4.72057e-08	4.99044e-08	1	1	0	
ADCY3	109	broad.mit.edu	37	2	25050927	25050927	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:25050927A>G	uc002rfs.3	-	13	2475	c.2276T>C	c.(2275-2277)GTG>GCG	p.V759A	ADCY3_uc002rfr.3_Intron|ADCY3_uc010ykm.1_Missense_Mutation_p.V759A	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	759	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					GAGGGACAGCACGGCCACATA	0.597											OREG0014498	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	30					0	0	1	0	0	
ASXL2	55252	broad.mit.edu	37	2	25965983	25965983	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:25965983G>A	uc002rgs.2	-	12	3444	c.3223C>T	c.(3223-3225)CGG>TGG	p.R1075W	ASXL2_uc002rgt.1_Intron	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	1075					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTCTGCCTCCGAACCCTCTGA	0.502													25	61					0	0	1	0	0	
AGBL5	60509	broad.mit.edu	37	2	27275836	27275836	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27275836C>T	uc002rie.2	+	2	227	c.10C>T	c.(10-12)CGC>TGC	p.R4C	AGBL5_uc002ric.2_Missense_Mutation_p.R4C|AGBL5_uc002rid.2_Missense_Mutation_p.R4C|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	4					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CATGGAGCTGCGCTGTGGGGG	0.562													21	24					0	0	1	0	0	
EMILIN1	11117	broad.mit.edu	37	2	27307347	27307347	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27307347A>G	uc002rii.3	+	5	2933	c.2505A>G	c.(2503-2505)GGA>GGG	p.G835G	EMILIN1_uc002rik.3_Silent_p.G70G|KHK_uc002ril.2_5'Flank|KHK_uc002rim.2_5'Flank|KHK_uc002rin.2_5'Flank|KHK_uc002rio.2_5'Flank	NM_007046	NP_008977	Q9Y6C2	EMIL1_HUMAN	elastin microfibril interfacer 1 precursor	835	Collagen-like.|Potential.				cell adhesion	collagen				pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCCTGCTGGACCTCCAGGAT	0.647													20	53					0	0	1	0	0	
ABHD1	84696	broad.mit.edu	37	2	27346824	27346824	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27346824G>A	uc002rit.2	+	1	168	c.8G>A	c.(7-9)AGC>AAC	p.S3N	ABHD1_uc002riu.2_RNA|ABHD1_uc002riv.2_RNA|ABHD1_uc002riw.2_Missense_Mutation_p.S3N	NM_032604	NP_115993	Q96SE0	ABHD1_HUMAN	abhydrolase domain-containing protein 1	3						integral to membrane	carboxylesterase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAGATGCTGAGCTCCTTCCTG	0.647													23	45					0	0	1	0	0	
SLC5A6	8884	broad.mit.edu	37	2	27429798	27429798	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27429798G>A	uc002rjd.2	-	4	797	c.406C>T	c.(406-408)CGA>TGA	p.R136*	SLC5A6_uc010eyv.1_Nonsense_Mutation_p.R136*	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	136					biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	TTATTGAATCGAAGCTCCAGG	0.463													100	167					0	0	1	0	0	
CAD	790	broad.mit.edu	37	2	27447234	27447234	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27447234G>A	uc002rji.2	+	9	1292	c.1130G>A	c.(1129-1131)CGC>CAC	p.R377H	CAD_uc010eyw.2_Missense_Mutation_p.R377H	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	377	Linker.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	CTGACTGAGCGCCTCTGTCCC	0.423													36	71					0	0	1	0	0	
SLC30A3	7781	broad.mit.edu	37	2	27480771	27480771	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27480771A>G	uc002rjk.2	-	4	764	c.578_splice	c.e4+1	p.L193_splice	SLC30A3_uc002rjj.2_5'UTR|SLC30A3_uc010ylh.1_Splice_Site_p.L188_splice	NM_003459	NP_003450	Q99726	ZNT3_HUMAN	solute carrier family 30 (zinc transporter),						regulation of sequestering of zinc ion	cell junction|integral to plasma membrane|late endosome|membrane fraction|synaptic vesicle membrane	zinc transporting ATPase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACTGGGACGTACAACAGGTTG	0.637													6	8					0	0	1	0	0	
TRIM54	57159	broad.mit.edu	37	2	27528963	27528963	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27528963A>G	uc002rjo.2	+	6	859	c.859A>G	c.(859-861)ATC>GTC	p.I287V	TRIM54_uc002rjn.2_Missense_Mutation_p.I329V	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	287	COS.				cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAAGGAGCTGATCAATAAGTG	0.498													21	38					0	0	1	0	0	
PPM1G	5496	broad.mit.edu	37	2	27604548	27604548	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27604548C>T	uc002rkl.2	-	11	1666	c.1559G>A	c.(1558-1560)CGA>CAA	p.R520Q	ZNF513_uc002rkj.2_5'Flank|ZNF513_uc002rkk.2_5'Flank|PPM1G_uc002rkm.2_Missense_Mutation_p.R301Q	NM_002707	NP_002698	O15355	PPM1G_HUMAN	protein phosphatase 1G	520					cell cycle arrest|protein dephosphorylation	cytoplasm|nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTCTAGTTTTCGCTTGCCACT	0.532													54	123					0	0	1	0	0	
PPM1G	5496	broad.mit.edu	37	2	27608664	27608664	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27608664C>T	uc002rkl.2	-	5	466	c.359G>A	c.(358-360)CGA>CAA	p.R120Q	PPM1G_uc002rkm.2_5'UTR	NM_002707	NP_002698	O15355	PPM1G_HUMAN	protein phosphatase 1G	120					cell cycle arrest|protein dephosphorylation	cytoplasm|nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTCAGTGGGTCGCCCTGCAAT	0.408													16	53					0	0	1	0	0	
NRBP1	29959	broad.mit.edu	37	2	27662758	27662758	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27662758A>G	uc002rko.2	+	12	1861	c.1029A>G	c.(1027-1029)GGA>GGG	p.G343G	NRBP1_uc002rkq.2_Silent_p.G342G|NRBP1_uc002rkp.2_Silent_p.G343G|NRBP1_uc002rkr.2_Silent_p.G134G|KRTCAP3_uc002rks.2_5'Flank|KRTCAP3_uc010ylr.1_5'Flank|KRTCAP3_uc002rkt.2_5'Flank	NM_013392	NP_037524	Q9UHY1	NRBP_HUMAN	nuclear receptor binding protein	343					ER to Golgi vesicle-mediated transport|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cell cortex|endomembrane system|lamellipodium|membrane|nucleoplasm	ATP binding|protein homodimerization activity|protein kinase activity			ovary(2)|lung(1)	3	Acute lymphoblastic leukemia(172;0.155)					GCATTGTGGGACACCAACGTG	0.522													52	74					0	0	1	0	0	
IFT172	26160	broad.mit.edu	37	2	27682647	27682647	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27682647C>A	uc002rku.2	-	24	2622	c.2571G>T	c.(2569-2571)GAG>GAT	p.E857D		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	857	TPR 4.				cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					CCCATGCCTCCTCTAGTTTCA	0.547													84	186					2.05912e-35	2.54041e-35	1	1	0	
GCKR	2646	broad.mit.edu	37	2	27745360	27745360	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27745360G>A	uc002rky.2	+	18	1672	c.1606G>A	c.(1606-1608)GAG>AAG	p.E536K	GCKR_uc010ezd.2_Missense_Mutation_p.E534K|GCKR_uc010ylu.1_Missense_Mutation_p.E346K	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	536					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					TCGATGCATCGAGAGCCTCCT	0.532													52	68					0	0	1	0	0	
C2orf16	84226	broad.mit.edu	37	2	27802287	27802287	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27802287A>G	uc002rkz.3	+	1	2899	c.2848A>G	c.(2848-2850)ATT>GTT	p.I950V		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	950										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TCCAGTTACTATTTCTCAGCC	0.428													28	65					0	0	1	0	0	
C2orf16	84226	broad.mit.edu	37	2	27803866	27803866	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27803866G>A	uc002rkz.3	+	1	4478	c.4427G>A	c.(4426-4428)AGA>AAA	p.R1476K	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1476										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CAGCCTCTGAGAACTGTTCAA	0.473													58	118					0	0	1	0	0	
GPN1	11321	broad.mit.edu	37	2	27873033	27873033	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:27873033C>T	uc010ymc.1	+	14	1154	c.1133C>T	c.(1132-1134)TCG>TTG	p.S378L	GPN1_uc010ezf.2_Missense_Mutation_p.S352L|GPN1_uc010yma.1_Missense_Mutation_p.S285L|GPN1_uc010ymb.1_Missense_Mutation_p.S269L|GPN1_uc010ymd.1_Missense_Mutation_p.S259L|GPN1_uc010yme.1_3'UTR	NM_007266	NP_009197	Q9HCN4	GPN1_HUMAN	GPN-loop GTPase 1 isoform a	364						cytoplasm	GTP binding|nucleoside-triphosphatase activity|protein binding				0						ATGCAAGAATCGATGGCACAA	0.388													12	45					0	0	1	0	0	
PLB1	151056	broad.mit.edu	37	2	28843160	28843160	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:28843160C>T	uc002rmb.1	+	47	3344	c.3344C>T	c.(3343-3345)TCC>TTC	p.S1115F	PLB1_uc010ezj.1_Missense_Mutation_p.S1104F|PLB1_uc002rme.1_Missense_Mutation_p.S80F|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1115	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|4.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					CCAAACAACTCCAGTGACCTA	0.517													8	19					0	0	1	0	0	
WDR43	23160	broad.mit.edu	37	2	29152516	29152516	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:29152516G>A	uc002rmo.2	+	11	1409	c.1377G>A	c.(1375-1377)ACG>ACA	p.T459T		NM_015131	NP_055946	Q15061	WDR43_HUMAN	WD repeat domain 43	459						nucleolus				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					ACCTCCAGACGAATAGCTTTC	0.353													12	39					0	0	1	0	0	
C2orf71	388939	broad.mit.edu	37	2	29295831	29295831	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:29295831G>A	uc002rmt.1	-	1	1297	c.1297C>T	c.(1297-1299)CCA>TCA	p.P433S		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	433					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GAGAGGCATGGGCTCCTTGCT	0.562													39	58					0	0	1	0	0	
C2orf71	388939	broad.mit.edu	37	2	29296217	29296217	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:29296217G>T	uc002rmt.1	-	1	911	c.911C>A	c.(910-912)GCA>GAA	p.A304E		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	304					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CAAGTGGGTTGCAGTGGAGTG	0.582													47	96					1.81118e-26	2.19096e-26	1	1	0	
CLIP4	79745	broad.mit.edu	37	2	29356672	29356672	+	Silent	SNP	G	A	A	rs150045383		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:29356672G>A	uc002rmv.2	+	5	758	c.519G>A	c.(517-519)TCG>TCA	p.S173S	CLIP4_uc002rmu.2_Silent_p.S173S|CLIP4_uc010ezm.1_Silent_p.S173S|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Silent_p.S155S	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	173	ANK 2.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGAAAACATCGAAACCAAAAG	0.328													23	45					0	0	1	0	0	
CLIP4	79745	broad.mit.edu	37	2	29404458	29404458	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:29404458G>A	uc002rmv.2	+	16	2056	c.1817G>A	c.(1816-1818)CGC>CAC	p.R606H	CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	606										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GCTTTGCGTCGCAGTTGGAGC	0.527													28	45					0	0	1	0	0	
CLIP4	79745	broad.mit.edu	37	2	29404707	29404707	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:29404707G>T	uc002rmv.2	+	16	2305	c.2066G>T	c.(2065-2067)AGA>ATA	p.R689I	CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	689										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					CGACCGAGCAGAGTGACCTAT	0.408													46	100					1.81118e-26	2.19096e-26	1	1	0	
ALK	238	broad.mit.edu	37	2	29754886	29754886	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:29754886G>A	uc002rmy.2	-	4	1956	c.1049C>T	c.(1048-1050)TCG>TTG	p.S350L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	350	MAM 1.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CCTGTGCACCGAGACGGCCAG	0.602			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				27	80					0	0	1	0	0	
LBH	81606	broad.mit.edu	37	2	30480466	30480466	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:30480466G>A	uc002rne.2	+	3	505	c.297G>A	c.(295-297)GCG>GCA	p.A99A		NM_030915	NP_112177	Q53QV2	LBH_HUMAN	limb bud and heart development homolog	99					multicellular organismal development|transcription, DNA-dependent	cytoplasm|nucleolus					0	Acute lymphoblastic leukemia(172;0.155)					AAGAGACAGCGAAAGAAAATA	0.542													17	36					0	0	1	0	0	
GALNT14	79623	broad.mit.edu	37	2	31168724	31168724	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:31168724C>A	uc002rnr.2	-	7	1286	c.667G>T	c.(667-669)GTG>TTG	p.V223L	GALNT14_uc002rnq.2_Missense_Mutation_p.V203L|GALNT14_uc002rns.2_Missense_Mutation_p.V228L|GALNT14_uc010ymr.1_Missense_Mutation_p.V188L|GALNT14_uc010ezo.1_Missense_Mutation_p.V190L|GALNT14_uc010ezp.1_Intron	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	223	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GGGCACACCACCCGCGTGTAG	0.398													23	43					3.5997e-14	4.05566e-14	1	1	0	
XDH	7498	broad.mit.edu	37	2	31590912	31590912	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:31590912C>A	uc002rnv.1	-	20	2191	c.2112G>T	c.(2110-2112)AAG>AAT	p.K704N		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	704					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGGAGTTGTTCTTTATAGCAT	0.428													46	87					2.56175e-15	2.9151e-15	1	1	0	
MEMO1	51072	broad.mit.edu	37	2	32094943	32094943	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32094943T>G	uc002rnx.2	-	8	1118	c.736A>C	c.(736-738)AGA>CGA	p.R246R	MEMO1_uc010ymu.1_Silent_p.R223R|MEMO1_uc010ezq.2_Silent_p.R246R|MEMO1_uc002rny.2_RNA|MEMO1_uc002rnz.2_RNA	NM_015955	NP_057039	Q9Y316	MEMO1_HUMAN	mediator of cell motility 1 isoform 1	246					regulation of microtubule-based process	cytosol|nucleus				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)					ATGGGATGTCTTCCACATATA	0.284													28	55					0	0	1	0	0	
SPAST	6683	broad.mit.edu	37	2	32341202	32341202	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32341202A>C	uc002roc.2	+	7	1240	c.1019A>C	c.(1018-1020)AAA>ACA	p.K340T	SPAST_uc002rod.2_Missense_Mutation_p.K308T	NM_014946	NP_055761	Q9UBP0	SPAST_HUMAN	spastin isoform 1	340	Sufficient for microtubule severing.				cell cycle|cell death|cell differentiation|cytokinesis, completion of separation|ER to Golgi vesicle-mediated transport|microtubule bundle formation|microtubule severing|nervous system development|protein hexamerization|protein homooligomerization	endoplasmic reticulum|endosome|integral to membrane|microtubule|microtubule organizing center|nucleus|perinuclear region of cytoplasm|spindle	alpha-tubulin binding|ATP binding|beta-tubulin binding|microtubule binding|microtubule-severing ATPase activity			breast(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					ACAGCTGTTAAATTTGATGAT	0.373													21	50					0	0	1	0	0	
SLC30A6	55676	broad.mit.edu	37	2	32399179	32399179	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32399179C>T	uc002roe.1	+	3	175	c.138C>T	c.(136-138)GGC>GGT	p.G46G	SLC30A6_uc002rof.1_Silent_p.G46G|SLC30A6_uc010ymw.1_Silent_p.G17G|SLC30A6_uc010ezr.1_Silent_p.G46G|SLC30A6_uc002rog.1_5'UTR|SLC30A6_uc010ezs.1_Intron|SLC30A6_uc002roh.1_Intron	NM_017964	NP_060434	Q6NXT4	ZNT6_HUMAN	solute carrier family 30 (zinc transporter),	46	Helical; (Potential).					Golgi membrane|integral to membrane	zinc ion transmembrane transporter activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TATGTACTGGCTTCCTGCTTA	0.328													35	80					0	0	1	0	0	
NLRC4	58484	broad.mit.edu	37	2	32475614	32475614	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32475614T>G	uc002roi.2	-	4	1565	c.1319A>C	c.(1318-1320)AAA>ACA	p.K440T	NLRC4_uc002roj.1_Missense_Mutation_p.K440T|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	440	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GTGAAAGAATTTATACTTTGG	0.468													27	53					0	0	1	0	0	
NLRC4	58484	broad.mit.edu	37	2	32475815	32475815	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32475815T>G	uc002roi.2	-	4	1364	c.1118A>C	c.(1117-1119)AAA>ACA	p.K373T	NLRC4_uc002roj.1_Missense_Mutation_p.K373T|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	373	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GTGTTTGTTTTTCTGTATCAA	0.458													26	47					0	0	1	0	0	
YIPF4	84272	broad.mit.edu	37	2	32515614	32515614	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32515614G>T	uc002rok.2	+	2	409	c.142G>T	c.(142-144)GAA>TAA	p.E48*		NM_032312	NP_115688	Q9BSR8	YIPF4_HUMAN	Yip1 domain family, member 4	48						endoplasmic reticulum|integral to membrane	protein binding				0	Acute lymphoblastic leukemia(172;0.155)					TTTTATCAAAGAATCTACAGC	0.368													37	79					6.97489e-18	8.11623e-18	1	1	0	
BIRC6	57448	broad.mit.edu	37	2	32640623	32640623	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32640623A>C	uc010ezu.2	+	10	2398	c.2264A>C	c.(2263-2265)GAA>GCA	p.E755A		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	755					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TGCCCTGTTGAATCCTTGAGT	0.393													20	59					0	0	1	0	0	
BIRC6	57448	broad.mit.edu	37	2	32715152	32715152	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32715152A>C	uc010ezu.2	+	43	8274	c.8140A>C	c.(8140-8142)ACT>CCT	p.T2714P		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2714					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GTATCCCAATACTTTGCTCCG	0.343													60	121					0	0	1	0	0	
BIRC6	57448	broad.mit.edu	37	2	32750029	32750029	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32750029G>T	uc010ezu.2	+	58	11832	c.11698G>T	c.(11698-11700)GAA>TAA	p.E3900*		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	3900					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TGAAGAGAAAGAAAAAGTTAA	0.294													3	6					0.115264	0.115603	1	1	0	
BIRC6	57448	broad.mit.edu	37	2	32754810	32754810	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32754810A>C	uc010ezu.2	+	60	12147	c.12013A>C	c.(12013-12015)ACT>CCT	p.T4005P	MIR558_hsa-mir-558|MI0003564_5'Flank	NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4005					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					AATAGATCTGACTGTTAAATT	0.398													21	40					0	0	1	0	0	
BIRC6	57448	broad.mit.edu	37	2	32768549	32768549	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32768549G>T	uc010ezu.2	+	62	12667	c.12533G>T	c.(12532-12534)AGA>ATA	p.R4178I		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4178					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					CTGAAAGAGAGAAAACATGCC	0.423													72	98					5.80444e-35	7.15898e-35	1	1	0	
BIRC6	57448	broad.mit.edu	37	2	32820140	32820140	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32820140A>C	uc010ezu.2	+	68	13675	c.13541A>C	c.(13540-13542)AAA>ACA	p.K4514T		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4514					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GCGGCTATGAAACCCAAACCT	0.239													14	37					0	0	1	0	0	
TTC27	55622	broad.mit.edu	37	2	32983575	32983575	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:32983575A>C	uc002rom.2	+	13	1900	c.1669A>C	c.(1669-1671)AAT>CAT	p.N557H	TTC27_uc010ymx.1_Missense_Mutation_p.N507H|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	557	TPR 3.|HAT 1.						protein binding			central_nervous_system(1)	1						GGTTAAGATTAATCCCATGCA	0.483													20	31					0	0	1	0	0	
TTC27	55622	broad.mit.edu	37	2	33002962	33002962	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:33002962T>G	uc002rom.2	+	14	1925	c.1694T>G	c.(1693-1695)TTT>TGT	p.F565C	TTC27_uc010ymx.1_Missense_Mutation_p.F515C|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	565	HAT 1.|TPR 4.						protein binding			central_nervous_system(1)	1						GGGGTGTGGTTTTCTCTCGGT	0.398													14	45					0	0	1	0	0	
RASGRP3	25780	broad.mit.edu	37	2	33745024	33745024	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:33745024G>A	uc002rox.2	+	6	806	c.179G>A	c.(178-180)CGA>CAA	p.R60Q	RASGRP3_uc010ync.1_Missense_Mutation_p.R60Q|RASGRP3_uc002roy.2_Missense_Mutation_p.R60Q	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	60	N-terminal Ras-GEF.				MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					TTTACGTATCGAAATGCCACT	0.368													3	9					0	0	1	0	0	
STRN	6801	broad.mit.edu	37	2	37152306	37152306	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:37152306A>C	uc002rpn.2	-	2	289	c.280T>G	c.(280-282)TTG>GTG	p.L94V	STRN_uc010ezx.2_Missense_Mutation_p.L94V	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	94	Potential.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				TCCTTCTTCAAATTTTCTTGG	0.353													32	85					0	0	1	0	0	
SULT6B1	391365	broad.mit.edu	37	2	37410583	37410583	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:37410583G>A	uc002rpu.2	-	3	294	c.273C>T	c.(271-273)TTC>TTT	p.F91F	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	129						cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				CTTTATTCTCGAAGATAGACC	0.348													29	66					0	0	1	0	0	
C2orf56	55471	broad.mit.edu	37	2	37459390	37459390	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:37459390T>C	uc002rqa.3	+	2	272	c.197T>C	c.(196-198)GTG>GCG	p.V66A	CEBPZ_uc002rpz.2_5'Flank|C2orf56_uc010ynj.1_RNA|C2orf56_uc002rqc.3_Missense_Mutation_p.V66A|C2orf56_uc010ynk.1_Missense_Mutation_p.V66A|C2orf56_uc010ynl.1_Missense_Mutation_p.V66A	NM_144736	NP_653337	Q7L592	MIDA_HUMAN	hypothetical protein LOC55471 isoform 1	66					mitochondrial respiratory chain complex I assembly	mitochondrion	enzyme binding|methyltransferase activity			central_nervous_system(1)	1		all_hematologic(82;0.21)				ATGAAGGAGGTGTTGACTAAT	0.547													35	100					0	0	1	0	0	
C2orf56	55471	broad.mit.edu	37	2	37471104	37471104	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:37471104A>C	uc002rqa.3	+	7	855	c.780A>C	c.(778-780)GAA>GAC	p.E260D	C2orf56_uc010ynj.1_RNA|C2orf56_uc002rqc.3_Missense_Mutation_p.E162D|C2orf56_uc010ynk.1_Missense_Mutation_p.E189D|C2orf56_uc010ynl.1_Missense_Mutation_p.E233D|C2orf56_uc010fah.2_RNA	NM_144736	NP_653337	Q7L592	MIDA_HUMAN	hypothetical protein LOC55471 isoform 1	260					mitochondrial respiratory chain complex I assembly	mitochondrion	enzyme binding|methyltransferase activity			central_nervous_system(1)	1		all_hematologic(82;0.21)				CCCCAGCAGAAGCCTTCATAC	0.373													17	23					0	0	1	0	0	
PRKD3	23683	broad.mit.edu	37	2	37513463	37513463	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:37513463C>T	uc002rqd.2	-	5	1322	c.767G>A	c.(766-768)CGC>CAC	p.R256H	PRKD3_uc002rqf.1_Missense_Mutation_p.R256H	NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	256					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				CCAGATTGGGCGACCACTCCA	0.403													21	54					0	0	1	0	0	
PRKD3	23683	broad.mit.edu	37	2	37543449	37543449	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:37543449A>C	uc002rqd.2	-	1	774	c.219T>G	c.(217-219)GTT>GTG	p.V73V	PRKD3_uc002rqf.1_Silent_p.V73V	NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	73					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				CTTCAATGGTAACACTCTCCC	0.433													74	137					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	38709193	38709193	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:38709193G>A	uc002rqu.1	+	1	268	c.201G>A	c.(199-201)GGG>GGA	p.G67G						SubName: Full=RPLP0 protein;																		CCATCCGAGGGCACCTGGAAA	0.567													34	52					0	0	1	0	0	
GALM	130589	broad.mit.edu	37	2	38956751	38956751	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:38956751C>T	uc002rqy.2	+	5	940	c.688C>T	c.(688-690)CTT>TTT	p.L230F		NM_138801	NP_620156	Q96C23	GALM_HUMAN	galactose mutarotase	230					hexose metabolic process	cytoplasm	aldose 1-epimerase activity|carbohydrate binding				0		all_hematologic(82;0.248)				GCCAGTGGAGCTTGGAAAACA	0.453													34	88					0	0	1	0	0	
GALM	130589	broad.mit.edu	37	2	38959022	38959022	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:38959022A>G	uc002rqy.2	+	6	1174	c.922A>G	c.(922-924)ACT>GCT	p.T308A		NM_138801	NP_620156	Q96C23	GALM_HUMAN	galactose mutarotase	308					hexose metabolic process	cytoplasm	aldose 1-epimerase activity|carbohydrate binding				0		all_hematologic(82;0.248)				CTGCCTGGAGACTCAGAACTG	0.522													26	45					0	0	1	0	0	
SOS1	6654	broad.mit.edu	37	2	39281904	39281904	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:39281904C>T	uc002rrk.3	-	5	612	c.571G>A	c.(571-573)GAA>AAA	p.E191K	SOS1_uc010ynr.1_RNA|SOS1_uc002rrl.2_5'Flank	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	191					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				GAAGGCTCTTCGTCAGTTAAA	0.279									Noonan_syndrome				51	109					0	0	1	0	0	
MAP4K3	8491	broad.mit.edu	37	2	39492390	39492390	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:39492390A>C	uc002rro.2	-	28	2181	c.2090T>G	c.(2089-2091)GTT>GGT	p.V697G	MAP4K3_uc002rrp.2_Missense_Mutation_p.V676G|MAP4K3_uc010yns.1_Missense_Mutation_p.V250G	NM_003618	NP_003609	Q8IVH8	M4K3_HUMAN	mitogen-activated protein kinase kinase kinase	697	CNH.				JNK cascade		ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(3)|lung(3)|stomach(1)|pancreas(1)	8		all_hematologic(82;0.211)				TTCTAATAGAACAATGCTAGT	0.318													56	127					0	0	1	0	0	
SLC8A1	6546	broad.mit.edu	37	2	40405582	40405582	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:40405582C>A	uc002rrx.2	-	2	1884	c.1860G>T	c.(1858-1860)AAG>AAT	p.K620N	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.K620N|SLC8A1_uc002rrz.2_Intron|SLC8A1_uc002rsa.2_Intron|SLC8A1_uc002rsd.3_Intron|SLC8A1_uc002rsb.1_Intron	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	620	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GGAAGAAGGTCTTGTTTTTCT	0.483													71	181					6.20995e-33	7.62698e-33	1	1	0	
SLC8A1	6546	broad.mit.edu	37	2	40655689	40655689	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:40655689C>T	uc002rrx.2	-	1	1756	c.1732G>A	c.(1732-1734)GAA>AAA	p.E578K	SLC8A1_uc002rry.2_Missense_Mutation_p.E578K|SLC8A1_uc002rrz.2_Missense_Mutation_p.E578K|SLC8A1_uc002rsa.2_Missense_Mutation_p.E578K|SLC8A1_uc002rsd.3_Missense_Mutation_p.E578K|SLC8A1_uc002rsb.1_Missense_Mutation_p.E578K|SLC8A1_uc010fan.1_Missense_Mutation_p.E578K|SLC8A1_uc002rsc.1_Missense_Mutation_p.E578K	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	578	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GCAGTCCCTTCGATGGTTTTA	0.418													30	65					0	0	1	0	0	
SLC8A1	6546	broad.mit.edu	37	2	40656049	40656049	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:40656049C>T	uc002rrx.2	-	1	1396	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K	SLC8A1_uc002rry.2_Missense_Mutation_p.E458K|SLC8A1_uc002rrz.2_Missense_Mutation_p.E458K|SLC8A1_uc002rsa.2_Missense_Mutation_p.E458K|SLC8A1_uc002rsd.3_Missense_Mutation_p.E458K|SLC8A1_uc002rsb.1_Missense_Mutation_p.E458K|SLC8A1_uc010fan.1_Missense_Mutation_p.E458K|SLC8A1_uc002rsc.1_Missense_Mutation_p.E458K	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	458	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TCAGTAAATTCATAATCAGAC	0.423													33	56					0	0	1	0	0	
KCNG3	170850	broad.mit.edu	37	2	42720290	42720290	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:42720290C>T	uc002rsn.2	-	1	948	c.352G>A	c.(352-354)GAC>AAC	p.D118N	MTA3_uc002rso.1_5'Flank|KCNG3_uc002rsm.2_Missense_Mutation_p.D118N	NM_133329	NP_579875	Q8TAE7	KCNG3_HUMAN	potassium voltage-gated channel, subfamily G,	118	Cytoplasmic (Potential).					endoplasmic reticulum|voltage-gated potassium channel complex	protein binding			central_nervous_system(1)	1						GACATGCGGTCGTCGAGGCGG	0.711													9	18					0	0	1	0	0	
THADA	63892	broad.mit.edu	37	2	43779352	43779352	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:43779352A>C	uc002rsw.3	-	18	3153	c.2801T>G	c.(2800-2802)TTA>TGA	p.L934*	THADA_uc010far.2_Nonsense_Mutation_p.L203*|THADA_uc002rsx.3_Nonsense_Mutation_p.L934*|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Nonsense_Mutation_p.L644*|THADA_uc010fat.1_Nonsense_Mutation_p.L82*|THADA_uc002rta.2_Nonsense_Mutation_p.L644*|THADA_uc002rtb.1_Nonsense_Mutation_p.L934*	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	934							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				CTTTAGAGATAACTTCTGCAA	0.453													14	19					0	0	1	0	0	
LOC728819	728819	broad.mit.edu	37	2	43903013	43903013	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:43903013T>G	uc010fav.1	-	1	449	c.449A>C	c.(448-450)GAA>GCA	p.E150A	PLEKHH2_uc002rte.3_Intron|PLEKHH2_uc002rtf.3_Intron|PLEKHH2_uc010yny.1_Intron	NM_001101330	NP_001094800			C1GALT1-specific chaperone 1-like												0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CTTTAAATTTTCAATGACAGC	0.433													109	195					0	0	1	0	0	
LRPPRC	10128	broad.mit.edu	37	2	44153069	44153069	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:44153069A>C	uc002rtr.2	-	26	2826	c.2768T>G	c.(2767-2769)CTT>CGT	p.L923R	LRPPRC_uc010yob.1_Missense_Mutation_p.L823R	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	923					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AAACCACTGAAGCCTTGCAGA	0.398													20	42					0	0	1	0	0	
SLC3A1	6519	broad.mit.edu	37	2	44539839	44539839	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:44539839G>T	uc002ruc.3	+	8	1525	c.1447G>T	c.(1447-1449)GAA>TAA	p.E483*	SLC3A1_uc002rtz.2_Nonsense_Mutation_p.E483*|SLC3A1_uc002rua.2_Nonsense_Mutation_p.E483*|SLC3A1_uc002rub.2_Nonsense_Mutation_p.E483*|SLC3A1_uc002rud.3_Nonsense_Mutation_p.E205*|SLC3A1_uc002rue.3_Nonsense_Mutation_p.E103*	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	483	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	CTATGGAGAAGAAATTGGAAT	0.388													22	38					6.33239e-15	7.18091e-15	1	1	0	
C2orf34	79823	broad.mit.edu	37	2	44999207	44999207	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:44999207A>C	uc002rum.2	+	11	1031	c.927A>C	c.(925-927)GAA>GAC	p.E309D		NM_024766	NP_079042	Q7Z624	CMKMT_HUMAN	hypothetical protein LOC79823	309						cytoplasm	calmodulin-lysine N-methyltransferase activity				0		all_hematologic(82;0.0892)|Acute lymphoblastic leukemia(82;0.17)				TATATGAAGAAAACCTTCATT	0.343													40	56					0	0	1	0	0	
SIX2	10736	broad.mit.edu	37	2	45235953	45235953	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:45235953G>A	uc002ruo.2	-	1	590	c.297C>T	c.(295-297)CGC>CGT	p.R99R	SIX2_uc002rup.2_Silent_p.R99R	NM_016932	NP_058628	Q9NPC8	SIX2_HUMAN	SIX homeobox 2	99						nucleus	sequence-specific DNA binding transcription factor activity			pancreas(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GGGGTCGGCCGCGCAGCTTCT	0.647													17	43					0	0	1	0	0	
SRBD1	55133	broad.mit.edu	37	2	45645648	45645648	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:45645648T>G	uc002rus.2	-	18	2265	c.2189A>C	c.(2188-2190)AAA>ACA	p.K730T	SRBD1_uc010yoc.1_Missense_Mutation_p.K249T	NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	730					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			AATAATATTTTTGGCCCTGTT	0.378													41	54					0	0	1	0	0	
SRBD1	55133	broad.mit.edu	37	2	45812864	45812864	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:45812864A>G	uc002rus.2	-	5	774	c.698T>C	c.(697-699)ATT>ACT	p.I233T		NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	233					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			AAAGAGACGAATGATGTTGGC	0.318													50	89					0	0	1	0	0	
MSH2	4436	broad.mit.edu	37	2	47710069	47710069	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:47710069G>A	uc002rvy.1	+	16	2854	c.2786G>A	c.(2785-2787)CGA>CAA	p.R929Q	MSH2_uc010yoh.1_Missense_Mutation_p.R863Q|MSH2_uc002rvz.2_Intron|MSH2_uc010fbg.2_Missense_Mutation_p.R739Q	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	929					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding	p.?(2)		large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ATCATTTCACGAATAAAAGTT	0.264			D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				20	25					0	0	1	0	0	
MSH6	2956	broad.mit.edu	37	2	48026079	48026079	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:48026079G>A	uc002rwd.3	+	4	1109	c.957G>A	c.(955-957)ACG>ACA	p.T319T	MSH6_uc002rwc.2_Silent_p.T319T|MSH6_uc010fbj.2_Silent_p.T17T|MSH6_uc010yoi.1_Silent_p.T189T|MSH6_uc010yoj.1_Silent_p.T17T	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	319					determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			GGAAGGAAACGCCCTCAGCCA	0.463			Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				106	211					0	0	1	0	0	
FOXN2	3344	broad.mit.edu	37	2	48573716	48573716	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:48573716T>G	uc002rwh.1	+	3	678	c.363T>G	c.(361-363)ATT>ATG	p.I121M		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	121	Fork-head.				embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			GTCTTCTCATTTATATGGCCA	0.418													75	162					0	0	1	0	0	
KLRAQ1	129285	broad.mit.edu	37	2	48734422	48734422	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:48734422A>C	uc002rwm.2	+	19	2168	c.1983A>C	c.(1981-1983)GAA>GAC	p.E661D	KLRAQ1_uc002rwl.2_Missense_Mutation_p.E615D|KLRAQ1_uc002rwk.2_Missense_Mutation_p.E650D|KLRAQ1_uc010yok.1_Missense_Mutation_p.E619D	NM_001135629	NP_001129101	Q6ZMI0	KLRAQ_HUMAN	KLRAQ motif containing 1 isoform 1	661										ovary(1)	1						CAGATGTGGAATCTCGTGAAG	0.348													13	40					0	0	1	0	0	
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48809412	48809412	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:48809412T>C	uc010yol.1	+	1	1687	c.1640T>C	c.(1639-1641)GTC>GCC	p.V547A	STON1_uc002rwo.3_Missense_Mutation_p.V547A|STON1_uc010fbm.2_Missense_Mutation_p.V547A|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.V547A|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.V547A	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	547					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CAGGCTTTTGTCAACATGGCC	0.463													34	89					0	0	1	0	0	
LHCGR	3973	broad.mit.edu	37	2	48915276	48915276	+	Nonsense_Mutation	SNP	G	A	A	rs121912524		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:48915276G>A	uc002rwu.3	-	11	1730	c.1660C>T	c.(1660-1662)CGA>TGA	p.R554*	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	554	Cytoplasmic (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity	p.R554*(1)		ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	TCTGGGTTTCGAACTGCAAAA	0.368									Familial_Male-Limited_Precocious_Puberty				37	98					0	0	1	0	0	
FSHR	2492	broad.mit.edu	37	2	49216184	49216184	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:49216184T>G	uc002rww.2	-	6	530	c.456A>C	c.(454-456)CAA>CAC	p.Q152H	FSHR_uc002rwx.2_Missense_Mutation_p.Q152H|FSHR_uc010fbn.2_Intron|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	152	LRR 5.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TTATGTTATCTTGAATGTCAC	0.363									Gonadal_Dysgenesis_46_XX				14	27					0	0	1	0	0	
NRXN1	9378	broad.mit.edu	37	2	50464092	50464092	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:50464092G>T	uc010fbp.2	-	2	1083	c.276C>A	c.(274-276)ATC>ATA	p.I92I	NRXN1_uc002rxb.3_Silent_p.I799I|NRXN1_uc010fbq.2_Silent_p.I1167I|NRXN1_uc002rxe.3_Silent_p.I1127I|NRXN1_uc002rxc.1_RNA	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	92	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CTTTGCTAAAGATATATGTCG	0.413													25	64					3.6726e-16	4.20841e-16	1	1	0	
NRXN1	9378	broad.mit.edu	37	2	50779867	50779867	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:50779867G>T	uc010fbq.2	-	9	3214	c.1737C>A	c.(1735-1737)GAC>GAA	p.D579E	NRXN1_uc002rxb.3_Missense_Mutation_p.D211E|NRXN1_uc002rxe.3_Missense_Mutation_p.D539E|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	141	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TAGCAAAGAAGTCCACCTTTA	0.443													49	79					1.19451e-25	1.44158e-25	1	1	0	
NRXN1	9378	broad.mit.edu	37	2	50850557	50850557	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:50850557G>T	uc010fbq.2	-	6	2605	c.1128C>A	c.(1126-1128)GTC>GTA	p.V376V	NRXN1_uc002rxb.3_Silent_p.V23V|NRXN1_uc002rxe.3_Silent_p.V343V|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CCAAATTAATGACCAGAGAGA	0.443													39	100					1.52319e-26	1.84394e-26	1	1	0	
ERLEC1	27248	broad.mit.edu	37	2	54028678	54028678	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:54028678C>A	uc002rxl.2	+	7	950	c.670C>A	c.(670-672)CTT>ATT	p.L224I	ASB3_uc002rxi.3_Intron|ERLEC1_uc002rxm.2_Missense_Mutation_p.L224I|ERLEC1_uc002rxn.2_Missense_Mutation_p.L224I	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	224					ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						GCATGAAATTCTTTCAGTAGC	0.378													32	41					5.45727e-16	6.24559e-16	1	1	0	
PSME4	23198	broad.mit.edu	37	2	54114544	54114544	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:54114544C>T	uc002rxp.2	-	40	4637	c.4581G>A	c.(4579-4581)TCG>TCA	p.S1527S	PSME4_uc010yop.1_Silent_p.S1413S|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Silent_p.S902S|PSME4_uc010fbv.1_Silent_p.S671S|PSME4_uc010fbt.1_Silent_p.S14S	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1527					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GGACATGAGGCGATATGGTTG	0.383													27	49					0	0	1	0	0	
PSME4	23198	broad.mit.edu	37	2	54117282	54117282	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:54117282C>T	uc002rxp.2	-	37	4311	c.4255G>A	c.(4255-4257)GAA>AAA	p.E1419K	PSME4_uc010yop.1_Missense_Mutation_p.E1305K|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Missense_Mutation_p.E794K|PSME4_uc010fbv.1_Missense_Mutation_p.E563K|PSME4_uc010fbt.1_5'Flank	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1419					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			TTATAAGTTTCTACGGTAATA	0.393													52	125					0	0	1	0	0	
PSME4	23198	broad.mit.edu	37	2	54154547	54154547	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:54154547C>A	uc002rxp.2	-	12	1633	c.1577G>T	c.(1576-1578)AGA>ATA	p.R526I	PSME4_uc010yop.1_Missense_Mutation_p.R412I|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_5'UTR|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	526					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GAGGTCATTTCTTTCTTGTAG	0.333													34	84					1.57351e-24	1.89089e-24	1	1	0	
PSME4	23198	broad.mit.edu	37	2	54159188	54159188	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:54159188C>A	uc002rxp.2	-	10	1156	c.1100G>T	c.(1099-1101)AGA>ATA	p.R367I	PSME4_uc010yop.1_Missense_Mutation_p.R253I|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_5'UTR|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	367					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			ACGATGCAATCTTCTAACAAC	0.413													22	72					0.0624174	0.0626775	1	1	0	
ACYP2	98	broad.mit.edu	37	2	54365782	54365782	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:54365782G>T	uc002rxq.3	+	3	508	c.82G>T	c.(82-84)GAA>TAA	p.E28*		NM_138448	NP_612457	P14621	ACYP2_HUMAN	acylphosphatase 2	28	Acylphosphatase-like.				phosphate metabolic process		acylphosphatase activity				0						ACAGTATACAGAAGATGAAGC	0.403													17	24					0.00074312	0.000755197	1	1	0	
SPTBN1	6711	broad.mit.edu	37	2	54839399	54839399	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:54839399G>A	uc002rxu.2	+	4	651	c.402G>A	c.(400-402)GGG>GGA	p.G134G	SPTBN1_uc002rxv.1_Silent_p.G134G|SPTBN1_uc002rxx.2_Silent_p.G121G	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	134	CH 1.|Actin-binding.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			AGAACATGGGGTCCCATGACA	0.557													31	68					0	0	1	0	0	
SPTBN1	6711	broad.mit.edu	37	2	54858050	54858050	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:54858050A>G	uc002rxu.2	+	16	3115	c.2866A>G	c.(2866-2868)AGC>GGC	p.S956G	SPTBN1_uc002rxx.2_Missense_Mutation_p.S943G	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	956	Spectrin 7.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			GTCTGCCCTGAGCATCCAGAA	0.547													10	20					0	0	1	0	0	
SPTBN1	6711	broad.mit.edu	37	2	54885016	54885016	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:54885016G>A	uc002rxu.2	+	30	6325	c.6076G>A	c.(6076-6078)GCC>ACC	p.A2026T	SPTBN1_uc002rxx.2_Missense_Mutation_p.A2013T|SPTBN1_uc002rxy.2_Missense_Mutation_p.A171T|SPTBN1_uc010you.1_Missense_Mutation_p.A16T	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	2026	Spectrin 17.|Interaction with ANK2.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CTCAAGAGACGCCAGTGTGGC	0.582											OREG0014619	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	59					0	0	1	0	0	
CCDC88A	55704	broad.mit.edu	37	2	55546112	55546112	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:55546112G>A	uc002ryv.2	-	19	4030	c.3188C>T	c.(3187-3189)GCG>GTG	p.A1063V	CCDC88A_uc010yoz.1_Missense_Mutation_p.A1064V|CCDC88A_uc010ypa.1_Missense_Mutation_p.A1063V|CCDC88A_uc002ryu.2_Missense_Mutation_p.A346V|CCDC88A_uc002rys.2_Missense_Mutation_p.A49V|CCDC88A_uc002ryw.2_Missense_Mutation_p.A347V|CCDC88A_uc010fby.1_5'UTR	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	1064	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						AGTTTTCAACGCTTGCTTCTC	0.358													23	52					0	0	1	0	0	
CCDC88A	55704	broad.mit.edu	37	2	55561360	55561360	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:55561360T>C	uc002ryv.2	-	15	3439	c.2597A>G	c.(2596-2598)AAC>AGC	p.N866S	CCDC88A_uc010yoz.1_Missense_Mutation_p.N866S|CCDC88A_uc010ypa.1_Missense_Mutation_p.N866S|CCDC88A_uc010ypb.1_Missense_Mutation_p.N768S|CCDC88A_uc002ryu.2_Missense_Mutation_p.N149S|CCDC88A_uc002ryw.2_Missense_Mutation_p.N149S	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	866	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding	p.N866K(1)		ovary(2)|skin(2)	4						TAGGGTTTTGTTTTCTTTTTC	0.313													27	50					0	0	1	0	0	
CCDC88A	55704	broad.mit.edu	37	2	55561901	55561901	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:55561901T>C	uc002ryv.2	-	15	2898	c.2056A>G	c.(2056-2058)ACC>GCC	p.T686A	CCDC88A_uc010yoz.1_Missense_Mutation_p.T686A|CCDC88A_uc010ypa.1_Missense_Mutation_p.T686A|CCDC88A_uc010ypb.1_Missense_Mutation_p.T588A|CCDC88A_uc002ryu.2_5'UTR|CCDC88A_uc002ryw.2_5'UTR	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	686	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						AACTGAAAGGTCAGATTTTTA	0.318													12	40					0	0	1	0	0	
CCDC104	112942	broad.mit.edu	37	2	55772048	55772048	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:55772048G>T	uc002ryy.2	+	10	1131	c.933G>T	c.(931-933)ATG>ATT	p.M311I	CCDC104_uc002ryx.2_Missense_Mutation_p.M336I	NM_080667	NP_542398	Q96G28	CC104_HUMAN	coiled-coil domain containing 104	311										ovary(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TTCAGGAAATGACAGAGAAAC	0.338													6	15					0.00116845	0.00118508	1	1	0	
SMEK2	57223	broad.mit.edu	37	2	55825627	55825627	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:55825627A>C	uc002rzc.2	-	4	1221	c.846T>G	c.(844-846)GTT>GTG	p.V282V	SMEK2_uc002rzb.2_Silent_p.V282V|SMEK2_uc002rzd.2_Silent_p.V282V|SMEK2_uc002rza.2_Silent_p.V158V	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	282						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TCTCTTCAAAAACAGATGGTG	0.353													7	93					0	0	1	0	0	
EFEMP1	2202	broad.mit.edu	37	2	56149545	56149545	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:56149545T>C	uc002rzh.2	-	2	361	c.31A>G	c.(31-33)ACT>GCT	p.T11A	EFEMP1_uc002rzi.2_Missense_Mutation_p.T11A|EFEMP1_uc002rzj.2_Missense_Mutation_p.T11A|EFEMP1_uc010ypc.1_5'UTR	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	11					negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			AGCGCCAGAGTCAGCATAGTT	0.428													44	85					0	0	1	0	0	
VRK2	7444	broad.mit.edu	37	2	58386762	58386762	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:58386762T>G	uc002rzo.2	+	16	2206	c.1461T>G	c.(1459-1461)GTT>GTG	p.V487V	VRK2_uc010fcb.2_3'UTR|VRK2_uc002rzs.2_3'UTR|VRK2_uc002rzr.2_3'UTR|VRK2_uc010fcc.2_Silent_p.V369V|VRK2_uc002rzv.2_Silent_p.V487V|VRK2_uc010fcd.2_Silent_p.V464V|VRK2_uc002rzp.2_Silent_p.V487V|VRK2_uc010ypg.1_Silent_p.V487V|VRK2_uc002rzq.2_3'UTR|VRK2_uc002rzu.2_3'UTR|VRK2_uc002rzt.2_Silent_p.V369V|FANCL_uc002rzw.3_3'UTR|FANCL_uc002rzx.3_3'UTR|FANCL_uc010fce.2_3'UTR	NM_001130482	NP_001123954	Q86Y07	VRK2_HUMAN	vaccinia related kinase 2 isoform 2	487	Helical; Anchor for type IV membrane protein; (Potential).					integral to membrane	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1						ACGCAGATGTTTATTATTATC	0.353													28	59					0	0	1	0	0	
KIAA1841	84542	broad.mit.edu	37	2	61343163	61343163	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:61343163A>G	uc002saw.3	+	17	2097	c.1794A>G	c.(1792-1794)GTA>GTG	p.V598V	KIAA1841_uc002sax.3_Silent_p.V452V|KIAA1841_uc002say.2_Silent_p.V598V	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	598											0			Epithelial(17;0.193)			AAAAGCAGGTATCTTCACCCT	0.378													32	82					0	0	1	0	0	
AHSA2	130872	broad.mit.edu	37	2	61411875	61411875	+	Silent	SNP	G	A	A	rs116428488	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:61411875G>A	uc002sbc.1	+	3	1601	c.15G>A	c.(13-15)ACG>ACA	p.T5T	AHSA2_uc002sbb.1_RNA	NM_152392	NP_689605	Q719I0	AHSA2_HUMAN	AHA1, activator of heat shock 90kDa protein	167					response to stress	cytoplasm	ATPase activator activity|chaperone binding			breast(1)	1			Epithelial(17;0.0994)			TTTTACCAACGAAAGCTATGG	0.403													22	36					0	0	1	0	0	
USP34	9736	broad.mit.edu	37	2	61439030	61439030	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:61439030A>C	uc002sbe.2	-	69	8739	c.8717T>G	c.(8716-8718)TTT>TGT	p.F2906C		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	2906					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			CTGAGCTATAAACAGCTGCAT	0.363													21	34					0	0	1	0	0	
XPO1	7514	broad.mit.edu	37	2	61710173	61710173	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:61710173C>T	uc002sbj.2	-	22	3459	c.2731G>A	c.(2731-2733)GCT>ACT	p.A911T	XPO1_uc010fcl.2_Missense_Mutation_p.A907T|XPO1_uc010ypn.1_Missense_Mutation_p.A907T|XPO1_uc002sbk.2_Missense_Mutation_p.A472T|XPO1_uc002sbg.2_Missense_Mutation_p.A108T|XPO1_uc002sbh.2_Missense_Mutation_p.A558T	NM_003400	NP_003391	O14980	XPO1_HUMAN	exportin 1	911	HEAT 8.				intracellular protein transport|mitotic prometaphase|mRNA metabolic process|mRNA transport|viral genome transport in host cell|viral infectious cycle	annulate lamellae|Cajal body|cytosol|kinetochore|nuclear envelope|nucleolus|ribonucleoprotein complex	protein binding|protein transporter activity|RNA binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	4			LUSC - Lung squamous cell carcinoma(7;5.71e-05)|Epithelial(17;0.0662)|all cancers(80;0.226)			AAACTCTGAGCTGCAGCTTCT	0.343													34	55					0	0	1	0	0	
XPO1	7514	broad.mit.edu	37	2	61722723	61722723	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:61722723C>T	uc002sbj.2	-	11	1642	c.914G>A	c.(913-915)CGA>CAA	p.R305Q	XPO1_uc010fcl.2_Missense_Mutation_p.R301Q|XPO1_uc010ypn.1_Missense_Mutation_p.R301Q|XPO1_uc002sbk.2_5'UTR|XPO1_uc002sbh.2_5'Flank	NM_003400	NP_003391	O14980	XPO1_HUMAN	exportin 1	305	Necessary for HTLV-1 Rex-mediated mRNA export.				intracellular protein transport|mitotic prometaphase|mRNA metabolic process|mRNA transport|viral genome transport in host cell|viral infectious cycle	annulate lamellae|Cajal body|cytosol|kinetochore|nuclear envelope|nucleolus|ribonucleoprotein complex	protein binding|protein transporter activity|RNA binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	4			LUSC - Lung squamous cell carcinoma(7;5.71e-05)|Epithelial(17;0.0662)|all cancers(80;0.226)			GTACGCAAGTCGAATATTGGT	0.299													16	46					0	0	1	0	0	
FAM161A	84140	broad.mit.edu	37	2	62067568	62067568	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:62067568T>G	uc010ypo.1	-	3	673	c.571A>C	c.(571-573)ATG>CTG	p.M191L	FAM161A_uc002sbm.3_Missense_Mutation_p.M191L|FAM161A_uc002sbn.3_Missense_Mutation_p.M1L|FAM161A_uc010fcm.1_RNA|FAM161A_uc010fcn.1_Missense_Mutation_p.M82L	NM_032180	NP_115556	Q3B820	F161A_HUMAN	hypothetical protein LOC84140	191					response to stimulus|visual perception	centrosome				large_intestine(2)|ovary(1)	3						TAGGTCATCATTCTGTTTTTC	0.413													40	100					0	0	1	0	0	
AFTPH	54812	broad.mit.edu	37	2	64778749	64778749	+	Silent	SNP	C	T	T	rs113401509	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:64778749C>T	uc002sdc.2	+	1	173	c.141C>T	c.(139-141)TTC>TTT	p.F47F	AFTPH_uc002scz.2_Silent_p.F47F|AFTPH_uc002sda.2_Silent_p.F47F|AFTPH_uc002sdb.2_Silent_p.F47F	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	47					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						TTGTTGATTTCGATACACCAG	0.398													32	182					0	0	1	0	0	
AFTPH	54812	broad.mit.edu	37	2	64778760	64778760	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:64778760A>G	uc002sdc.2	+	1	184	c.152A>G	c.(151-153)GAT>GGT	p.D51G	AFTPH_uc002scz.2_Missense_Mutation_p.D51G|AFTPH_uc002sda.2_Missense_Mutation_p.D51G|AFTPH_uc002sdb.2_Missense_Mutation_p.D51G	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	51					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						GATACACCAGATTATACTCGT	0.388													69	131					0	0	1	0	0	
AFTPH	54812	broad.mit.edu	37	2	64778948	64778948	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:64778948G>T	uc002sdc.2	+	1	372	c.340G>T	c.(340-342)GAA>TAA	p.E114*	AFTPH_uc002scz.2_Nonsense_Mutation_p.E114*|AFTPH_uc002sda.2_Nonsense_Mutation_p.E114*|AFTPH_uc002sdb.2_Nonsense_Mutation_p.E114*	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	114					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						CACCAGCAAAGAAATAATTTC	0.368													33	60					2.68265e-12	2.96656e-12	1	1	0	
AFTPH	54812	broad.mit.edu	37	2	64779504	64779504	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:64779504T>C	uc002sdc.2	+	1	928	c.896T>C	c.(895-897)GTT>GCT	p.V299A	AFTPH_uc002scz.2_Missense_Mutation_p.V299A|AFTPH_uc002sda.2_Missense_Mutation_p.V299A|AFTPH_uc002sdb.2_Missense_Mutation_p.V299A	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	299					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						CAGGTTTGTGTTTCAGAAATA	0.383													51	75					0	0	1	0	0	
AFTPH	54812	broad.mit.edu	37	2	64794728	64794728	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:64794728C>T	uc002sdc.2	+	2	2000	c.1968C>T	c.(1966-1968)TTC>TTT	p.F656F	AFTPH_uc002scz.2_Silent_p.F656F|AFTPH_uc002sda.2_Silent_p.F656F|AFTPH_uc002sdb.2_Silent_p.F656F	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	656					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						AGCGAATTTTCGAAGCATGTT	0.378													56	103					0	0	1	0	0	
ACTR2	10097	broad.mit.edu	37	2	65473846	65473846	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:65473846A>C	uc002sdq.2	+	3	563	c.348A>C	c.(346-348)CCA>CCC	p.P116P	ACTR2_uc010yqf.1_Silent_p.P61P|ACTR2_uc002sdp.2_Silent_p.P121P|ACTR2_uc010yqg.1_Silent_p.P64P	NM_005722	NP_005713	P61160	ARP2_HUMAN	actin-related protein 2 isoform b	116					cellular component movement	Arp2/3 protein complex|cell projection|cytoplasm	actin binding|ATP binding				0						CTATGAACCCAACCAAAAACA	0.333													45	76					0	0	1	0	0	
MEIS1	4211	broad.mit.edu	37	2	66667099	66667099	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:66667099G>A	uc002sdu.2	+	3	821	c.364G>A	c.(364-366)GCC>ACC	p.A122T	MEIS1_uc002sdt.2_Missense_Mutation_p.A122T|MEIS1_uc002sdv.2_Missense_Mutation_p.A120T|MEIS1_uc010yqh.1_RNA|MEIS1_uc010yqi.1_Missense_Mutation_p.A57T|MEIS1_uc002sdw.1_5'Flank	NM_002398	NP_002389	O00470	MEIS1_HUMAN	Meis homeobox 1	122							sequence-specific DNA binding transcription factor activity				0						TGAAGATATAGCCGTGTTCGC	0.428													7	13					0	0	1	0	0	
APLF	200558	broad.mit.edu	37	2	68765080	68765080	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:68765080A>G	uc002sep.2	+	7	1054	c.881A>G	c.(880-882)AAC>AGC	p.N294S	APLF_uc002seq.1_RNA|APLF_uc010fdf.2_Missense_Mutation_p.N270S|APLF_uc002ser.1_Missense_Mutation_p.N25S	NM_173545	NP_775816	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor	294					double-strand break repair|single strand break repair	cytosol|nucleus	3'-5' exonuclease activity|DNA-(apurinic or apyrimidinic site) lyase activity|endodeoxyribonuclease activity|metal ion binding|nucleotide binding|protein binding			ovary(2)	2						GCACAGAGAAACAAACTTCCA	0.313													14	35					0	0	1	0	0	
BMP10	27302	broad.mit.edu	37	2	69092776	69092776	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:69092776C>T	uc002sez.1	-	2	1421	c.1262G>A	c.(1261-1263)TGT>TAT	p.C421Y		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	421					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						TCTACAGCCACATTCGGAGAC	0.403													34	109					0	0	1	0	0	
BMP10	27302	broad.mit.edu	37	2	69093327	69093327	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:69093327T>C	uc002sez.1	-	2	870	c.711A>G	c.(709-711)GGA>GGG	p.G237G		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	237					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						TTTCTAGCCGTCCACTGCTGG	0.502													18	37					0	0	1	0	0	
ANTXR1	84168	broad.mit.edu	37	2	69409700	69409700	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:69409700C>T	uc002sfg.2	+	16	1617	c.1261C>T	c.(1261-1263)CCG>TCG	p.P421S		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	421	Cytoplasmic (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						AGTCAAGATGCCGGAGCAGGA	0.458									Familial_Infantile_Hemangioma				38	88					0	0	1	0	0	
GFPT1	2673	broad.mit.edu	37	2	69586407	69586407	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:69586407T>G	uc002sfh.2	-	5	580	c.401A>C	c.(400-402)AAG>ACG	p.K134T	GFPT1_uc002sfi.1_5'UTR	NM_002056	NP_002047	Q06210	GFPT1_HUMAN	glucosamine-fructose-6-phosphate	134	Glutamine amidotransferase type-2.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			skin(1)	1						TACCAAAAACTTTTTCAAGTC	0.363													45	52					0	0	1	0	0	
AAK1	22848	broad.mit.edu	37	2	69741737	69741737	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:69741737C>T	uc002sfp.2	-	13	2147	c.1642G>A	c.(1642-1644)GCC>ACC	p.A548T	AAK1_uc010fdk.2_Missense_Mutation_p.A548T|AAK1_uc010yqm.1_Missense_Mutation_p.A548T	NM_014911	NP_055726	Q2M2I8	AAK1_HUMAN	AP2 associated kinase 1	548	Gln-rich.					coated pit|mitochondrion|plasma membrane	ATP binding|protein serine/threonine kinase activity				0						AGGGCTGTGGCCAgctgttgc	0.368													3	12					0	0	1	0	0	
GMCL1	64395	broad.mit.edu	37	2	70096947	70096947	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:70096947C>T	uc002sfu.2	+	12	1522	c.1315C>T	c.(1315-1317)CCA>TCA	p.P439S		NM_178439	NP_848526	Q96IK5	GMCL1_HUMAN	germ cell-less	439					cell differentiation|multicellular organismal development|spermatogenesis	nuclear matrix				ovary(3)	3						ACTGAATCAGCCATGTAGCGG	0.443													26	47					0	0	1	0	0	
MXD1	4084	broad.mit.edu	37	2	70162562	70162562	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:70162562T>C	uc002sfy.2	+	4	543	c.283T>C	c.(283-285)TTG>CTG	p.L95L	MXD1_uc010yqp.1_Silent_p.L95L|MXD1_uc010yqq.1_Silent_p.L32L|MXD1_uc010yqr.1_RNA|MXD1_uc010yqs.1_Silent_p.L85L	NM_002357	NP_002348	Q05195	MAD1_HUMAN	MAX dimerization protein 1	95	Helix-loop-helix motif.				cell proliferation|multicellular organismal development	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0						ACACACTACGTTGAGTTTATT	0.438													27	41					0	0	1	0	0	
TIA1	7072	broad.mit.edu	37	2	70441551	70441551	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:70441551A>G	uc002sgj.3	-	12	1181	c.964T>C	c.(964-966)TAT>CAT	p.Y322H	TIA1_uc002sgk.3_Missense_Mutation_p.Y311H|TIA1_uc002sgl.3_RNA	NM_022173	NP_071505	P31483	TIA1_HUMAN	TIA1 cytotoxic granule-associated RNA binding	322					apoptosis|induction of apoptosis|regulation of nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|poly(A) RNA binding|protein binding				0						TTAGGCATATACTGGCCAATT	0.393													20	58					0	0	1	0	0	
TIA1	7072	broad.mit.edu	37	2	70454891	70454891	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:70454891G>A	uc002sgj.3	-	6	591	c.374C>T	c.(373-375)GCT>GTT	p.A125V	TIA1_uc002sgk.3_Missense_Mutation_p.A114V|TIA1_uc002sgl.3_RNA|TIA1_uc002sgm.3_Missense_Mutation_p.A125V	NM_022173	NP_071505	P31483	TIA1_HUMAN	TIA1 cytotoxic granule-associated RNA binding	125	RRM 2.				apoptosis|induction of apoptosis|regulation of nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|poly(A) RNA binding|protein binding				0						TGGTGCAAAAGCAGCTTTTAT	0.308													27	85					0	0	1	0	0	
PCYOX1	51449	broad.mit.edu	37	2	70503962	70503962	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:70503962G>A	uc002sgn.3	+	6	1022	c.956G>A	c.(955-957)CGA>CAA	p.R319Q	PCYOX1_uc010fdo.2_Missense_Mutation_p.R242Q|PCYOX1_uc010yqu.1_Missense_Mutation_p.R301Q	NM_016297	NP_057381	Q9UHG3	PCYOX_HUMAN	prenylcysteine oxidase 1 precursor	319					prenylated protein catabolic process	lysosome|very-low-density lipoprotein particle	prenylcysteine oxidase activity			central_nervous_system(1)	1						CCGTTGAATCGAAAAATGTCG	0.378													14	36					0	0	1	0	0	
ATP6V1B1	525	broad.mit.edu	37	2	71163176	71163176	+	Missense_Mutation	SNP	G	A	A	rs143516810		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:71163176G>A	uc002shj.2	+	1	179	c.92G>A	c.(91-93)CGA>CAA	p.R31Q	ATP6V1B1_uc002shi.1_Missense_Mutation_p.R31Q|ATP6V1B1_uc010fdv.2_Missense_Mutation_p.R31Q|ATP6V1B1_uc010fdw.2_RNA	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	31					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						GCGGTCACCCGAAACTACATC	0.667													36	47					0	0	1	0	0	
OR7E91P	79315	broad.mit.edu	37	2	71256089	71256089	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:71256089G>T	uc002sho.2	+	3		c.259G>T			OR7E91P_uc010fdz.2_RNA	NR_002185				Homo sapiens olfactory receptor, family 7, subfamily E, member 91 pseudogene, mRNA (cDNA clone IMAGE:3996998).												0						AGGAGCCTGAGAACTCCTCCT	0.517													5	12					0.184627	0.184943	1	1	0	
MPHOSPH10	10199	broad.mit.edu	37	2	71360659	71360659	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:71360659G>T	uc002sht.1	+	2	1073	c.721G>T	c.(721-723)GAT>TAT	p.D241Y	MPHOSPH10_uc010feb.1_Missense_Mutation_p.D241Y	NM_005791	NP_005782	O00566	MPP10_HUMAN	M-phase phosphoprotein 10	241					RNA splicing, via transesterification reactions|rRNA processing	chromosome|nucleolus|small nucleolar ribonucleoprotein complex	protein binding			skin(2)|ovary(1)	3						TGAAGATATTGATTCTGATGA	0.348													36	78					1.60099e-16	1.84126e-16	1	1	0	
ZNF638	27332	broad.mit.edu	37	2	71653942	71653942	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:71653942T>G	uc002shx.2	+	24	5262	c.4943T>G	c.(4942-4944)TTA>TGA	p.L1648*	ZNF638_uc002shy.2_Nonsense_Mutation_p.L1648*|ZNF638_uc002shz.2_Nonsense_Mutation_p.L1648*|ZNF638_uc002sia.2_Nonsense_Mutation_p.L1648*|ZNF638_uc002sib.1_3'UTR|ZNF638_uc010fed.2_Intron|ZNF638_uc002sic.2_Nonsense_Mutation_p.L745*|ZNF638_uc002sid.2_Nonsense_Mutation_p.L17*	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	1648					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						TTAGATGAATTAATTGACCAA	0.358													26	56					0	0	1	0	0	
DYSF	8291	broad.mit.edu	37	2	71766360	71766360	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:71766360G>T	uc002sie.2	+	16	1847	c.1471G>T	c.(1471-1473)GAA>TAA	p.E491*	DYSF_uc010feg.2_Nonsense_Mutation_p.E522*|DYSF_uc010feh.2_Nonsense_Mutation_p.E491*|DYSF_uc002sig.3_Nonsense_Mutation_p.E491*|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Nonsense_Mutation_p.E491*|DYSF_uc010fef.2_Nonsense_Mutation_p.E522*|DYSF_uc010fei.2_Nonsense_Mutation_p.E522*|DYSF_uc010fek.2_Nonsense_Mutation_p.E523*|DYSF_uc010fej.2_Nonsense_Mutation_p.E492*|DYSF_uc010fel.2_Nonsense_Mutation_p.E492*|DYSF_uc010feo.2_Nonsense_Mutation_p.E523*|DYSF_uc010fem.2_Nonsense_Mutation_p.E492*|DYSF_uc010fen.2_Nonsense_Mutation_p.E523*|DYSF_uc002sif.2_Nonsense_Mutation_p.E492*	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	491	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CCCTGGAGGAGAAATAGAAGG	0.537													30	61					3.90053e-15	4.43362e-15	1	1	0	
DYSF	8291	broad.mit.edu	37	2	71797810	71797810	+	Missense_Mutation	SNP	G	A	A	rs150877497		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:71797810G>A	uc002sie.2	+	29	3489	c.3113G>A	c.(3112-3114)CGA>CAA	p.R1038Q	DYSF_uc010feg.2_Missense_Mutation_p.R1069Q|DYSF_uc010feh.2_Missense_Mutation_p.R1024Q|DYSF_uc002sig.3_Missense_Mutation_p.R1024Q|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R1038Q|DYSF_uc010fef.2_Missense_Mutation_p.R1055Q|DYSF_uc010fei.2_Missense_Mutation_p.R1055Q|DYSF_uc010fek.2_Missense_Mutation_p.R1056Q|DYSF_uc010fej.2_Missense_Mutation_p.R1025Q|DYSF_uc010fel.2_Missense_Mutation_p.R1025Q|DYSF_uc010feo.2_Missense_Mutation_p.R1070Q|DYSF_uc010fem.2_Missense_Mutation_p.R1039Q|DYSF_uc010fen.2_Missense_Mutation_p.R1056Q|DYSF_uc002sif.2_Missense_Mutation_p.R1039Q	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1038	Cytoplasmic (Potential).|Arg-rich.		R -> Q (in LGMD2B; uncertain pathogenicity).			cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TACACACACCGACGGCGGCGC	0.642													12	22					0	0	1	0	0	
CYP26B1	56603	broad.mit.edu	37	2	72359686	72359686	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:72359686C>T	uc002sih.1	-	6	1209	c.1209G>A	c.(1207-1209)GCG>GCA	p.A403A	CYP26B1_uc010yra.1_Silent_p.A386A|CYP26B1_uc010yrb.1_Silent_p.A328A	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	403					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						TGAACACGGGCGCTGTGTCAT	0.612													11	13					0	0	1	0	0	
EXOC6B	23233	broad.mit.edu	37	2	72742235	72742235	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:72742235C>T	uc010fep.2	-	9	1074	c.936G>A	c.(934-936)GAG>GAA	p.E312E	EXOC6B_uc002sij.2_Silent_p.E312E	NM_015189	NP_056004	Q9Y2D4	EXC6B_HUMAN	SEC15-like 2	312					protein transport|vesicle docking involved in exocytosis	exocyst				central_nervous_system(2)	2						GGTAGTAATTCTCAAATGTTT	0.393													9	7					0	0	1	0	0	
SMYD5	10322	broad.mit.edu	37	2	73449025	73449025	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73449025A>C	uc002siw.2	+	6	638	c.609A>C	c.(607-609)GAA>GAC	p.E203D	SMYD5_uc010yre.1_Missense_Mutation_p.E87D|SMYD5_uc002six.1_5'Flank	NM_006062	NP_006053	Q6GMV2	SMYD5_HUMAN	SMYD family member 5	203	Poly-Glu.						metal ion binding				0						AAGAGGAGGAAATTGTCCATA	0.458													32	47					0	0	1	0	0	
CCT7	10574	broad.mit.edu	37	2	73477500	73477500	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73477500G>A	uc002siz.2	+	10	1239	c.1137G>A	c.(1135-1137)GAG>GAA	p.E379E	CCT7_uc002sja.2_Silent_p.E175E|CCT7_uc010yrf.1_Silent_p.E335E|CCT7_uc010feu.2_Silent_p.E337E|CCT7_uc010yrg.1_Silent_p.E279E|CCT7_uc010yrh.1_Silent_p.E251E|CCT7_uc010yri.1_Silent_p.E292E	NM_006429	NP_006420	Q99832	TCPH_HUMAN	chaperonin containing TCP1, subunit 7 isoform a	379					'de novo' posttranslational protein folding		ATP binding|unfolded protein binding				0						GCGGCGCCGAGCAGTTTATGG	0.527													42	96					0	0	1	0	0	
ALMS1	7840	broad.mit.edu	37	2	73635812	73635812	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73635812A>C	uc002sje.1	+	3	501	c.390A>C	c.(388-390)CAA>CAC	p.Q130H	ALMS1_uc002sjf.1_Intron	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	129					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GTAGAACACAAATTTCTGATA	0.373													12	80					0	0	1	0	0	
ALMS1	7840	broad.mit.edu	37	2	73675812	73675812	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73675812G>A	uc002sje.1	+	10	2272	c.2161G>A	c.(2161-2163)GAG>AAG	p.E721K	ALMS1_uc002sjf.1_Missense_Mutation_p.E677K|ALMS1_uc002sjg.2_Missense_Mutation_p.E107K|ALMS1_uc002sjh.1_Missense_Mutation_p.E107K	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	719	4.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CTCACATAGAGAGAAGCCTGG	0.473													76	165					0	0	1	0	0	
ALMS1	7840	broad.mit.edu	37	2	73679414	73679414	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73679414T>G	uc002sje.1	+	10	5874	c.5763T>G	c.(5761-5763)GTT>GTG	p.V1921V	ALMS1_uc002sjf.1_Silent_p.V1877V|ALMS1_uc002sjg.2_Silent_p.V1307V|ALMS1_uc002sjh.1_Silent_p.V1307V	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1919	34 X 47 AA approximate tandem repeat.|30.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CTTTAAATGTTTTTGTTGTTC	0.418													27	68					0	0	1	0	0	
ALMS1	7840	broad.mit.edu	37	2	73680757	73680757	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73680757G>A	uc002sje.1	+	10	7217	c.7106G>A	c.(7105-7107)AGC>AAC	p.S2369N	ALMS1_uc002sjf.1_Missense_Mutation_p.S2325N|ALMS1_uc002sjg.2_Missense_Mutation_p.S1755N|ALMS1_uc002sjh.1_Missense_Mutation_p.S1755N	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2367					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GAAGCAGAGAGCAAAGTCAGT	0.418													26	84					0	0	1	0	0	
ALMS1	7840	broad.mit.edu	37	2	73717091	73717091	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73717091C>T	uc002sje.1	+	12	8119	c.8008C>T	c.(8008-8010)CGA>TGA	p.R2670*	ALMS1_uc002sjf.1_Nonsense_Mutation_p.R2626*|ALMS1_uc002sjg.2_Nonsense_Mutation_p.R2056*|ALMS1_uc002sjh.1_Nonsense_Mutation_p.R2056*	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2668					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CAAAGGTCTTCGAATGCCATT	0.378													77	141					0	0	1	0	0	
ALMS1	7840	broad.mit.edu	37	2	73777441	73777441	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73777441A>C	uc002sje.1	+	15	10069	c.9958A>C	c.(9958-9960)ACA>CCA	p.T3320P	ALMS1_uc002sjf.1_Missense_Mutation_p.T3276P|ALMS1_uc002sjg.2_Missense_Mutation_p.T2706P|ALMS1_uc002sjh.1_Missense_Mutation_p.T2706P|ALMS1_uc010fev.1_Intron	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3318					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GGTGCTAGGCACAAGAGATGA	0.438													37	67					0	0	1	0	0	
ALMS1	7840	broad.mit.edu	37	2	73826650	73826650	+	Splice_Site	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73826650T>G	uc002sje.1	+	19	11782	c.11671_splice	c.e19+2	p.G3891_splice	ALMS1_uc002sjf.1_Splice_Site_p.G3847_splice|ALMS1_uc002sjh.1_Splice_Site_p.G3277_splice	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1						G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TACAAGCAGGTAATTACTTGA	0.229													64	105					0	0	1	0	0	
NAT8	9027	broad.mit.edu	37	2	73868397	73868397	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73868397C>T	uc002sji.1	-	2	526	c.359G>A	c.(358-360)GGC>GAC	p.G120D		NM_003960	NP_003951	Q9UHE5	NAT8_HUMAN	N-acetyltransferase 8	120	N-acetyltransferase.				gastrulation with mouth forming second|response to drug	integral to membrane	N-acetyltransferase activity			ovary(1)	1						TCCTACCATGCCCACCACCTT	0.532													39	72					0	0	1	0	0	
NAT8	9027	broad.mit.edu	37	2	73868654	73868654	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:73868654C>T	uc002sji.1	-	2	269	c.102G>A	c.(100-102)CGG>CGA	p.R34R		NM_003960	NP_003951	Q9UHE5	NAT8_HUMAN	N-acetyltransferase 8	34					gastrulation with mouth forming second|response to drug	integral to membrane	N-acetyltransferase activity			ovary(1)	1						TCAGCAATTGCCGGAAGGTGG	0.617													62	100					0	0	1	0	0	
C2orf78	388960	broad.mit.edu	37	2	74043935	74043935	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:74043935T>C	uc002sjr.1	+	3	2706	c.2585T>C	c.(2584-2586)GTT>GCT	p.V862A		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	862										ovary(2)	2						AAACCCACTGTTCCTGAGCCA	0.527													28	46					0	0	1	0	0	
DCTN1	1639	broad.mit.edu	37	2	74594897	74594897	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:74594897C>A	uc002skx.2	-	18	2421	c.2110G>T	c.(2110-2112)GAA>TAA	p.E704*	DCTN1_uc002skt.1_5'Flank|DCTN1_uc002skv.2_Nonsense_Mutation_p.E570*|DCTN1_uc002sku.2_Nonsense_Mutation_p.E570*|DCTN1_uc002skw.1_Nonsense_Mutation_p.E680*|DCTN1_uc010ffd.2_Nonsense_Mutation_p.E684*|DCTN1_uc002sky.2_Nonsense_Mutation_p.E667*	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	704					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						TGCAGCAGTTCAATGAGGAAA	0.522													27	40					3.6726e-16	4.20841e-16	1	1	0	
DQX1	165545	broad.mit.edu	37	2	74746199	74746199	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:74746199G>T	uc010yrw.1	-	11	2130	c.1965C>A	c.(1963-1965)TGC>TGA	p.C655*	DQX1_uc002smc.2_Nonsense_Mutation_p.C216*	NM_133637	NP_598376	Q8TE96	DQX1_HUMAN	DEAQ box polypeptide 1 (RNA-dependent ATPase)	655						nucleus	ATP binding|helicase activity|nucleic acid binding			ovary(2)	2						CAATGGAAAGGCAGTTGTCTT	0.527													27	66					2.61193e-14	2.9448e-14	1	1	0	
AUP1	550	broad.mit.edu	37	2	74754076	74754076	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:74754076G>A	uc010yrx.1	-	10	1485	c.1359C>T	c.(1357-1359)TAC>TAT	p.Y453Y	DQX1_uc010yrw.1_5'Flank|AUP1_uc002sme.2_Silent_p.Y129Y|AUP1_uc002smf.2_Silent_p.Y396Y|AUP1_uc002smg.2_RNA|AUP1_uc002smh.2_Silent_p.Y305Y|HTRA2_uc002smi.1_5'Flank|HTRA2_uc002smj.1_5'Flank|HTRA2_uc002smk.1_5'Flank|HTRA2_uc002sml.1_5'Flank|HTRA2_uc002smm.1_5'Flank|HTRA2_uc002smn.1_5'Flank			Q9Y679	AUP1_HUMAN	SubName: Full=cDNA FLJ57204, highly similar to Homo sapiens ancient ubiquitous protein 1 (AUP1), transcript variant 2, mRNA;	462	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nucleus	protein binding				0						ACCTTCTTGCGTATTCATATA	0.517													6	82					0	0	1	0	0	
SEMA4F	10505	broad.mit.edu	37	2	74901669	74901669	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:74901669G>A	uc002sna.1	+	8	978	c.867G>A	c.(865-867)ACG>ACA	p.T289T	SEMA4F_uc010ysb.1_3'UTR|SEMA4F_uc010ffq.1_Silent_p.T256T|SEMA4F_uc010ffr.1_5'UTR|SEMA4F_uc002snb.1_5'UTR|SEMA4F_uc002snc.1_Silent_p.T134T	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	289	Sema.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GATGGACGACGTTTTTGAAAG	0.592													47	69					0	0	1	0	0	
HK2	3099	broad.mit.edu	37	2	75113653	75113653	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:75113653G>A	uc002snd.2	+	15	3998	c.2072G>A	c.(2071-2073)CGC>CAC	p.R691H		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	691	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						GAGGAGATGCGCAACGTGGAA	0.582													31	73					0	0	1	0	0	
C2orf3	6936	broad.mit.edu	37	2	75897301	75897301	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:75897301G>A	uc002sno.2	-	15	2196	c.2066C>T	c.(2065-2067)GCC>GTC	p.A689V	MRPL19_uc002snm.1_Intron|C2orf3_uc010ffs.2_Missense_Mutation_p.A251V|C2orf3_uc002snn.2_Missense_Mutation_p.A520V|C2orf3_uc010fft.2_Missense_Mutation_p.A364V	NM_003203	NP_003194	P16383	GCF_HUMAN	hypothetical protein LOC6936	689					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CCCAGGTGTGGCATTGAGAAG	0.368													26	58					0	0	1	0	0	
C2orf3	6936	broad.mit.edu	37	2	75921549	75921549	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:75921549T>C	uc002sno.2	-	6	968	c.838A>G	c.(838-840)ACA>GCA	p.T280A	C2orf3_uc010ffs.2_5'UTR|C2orf3_uc002snn.2_Missense_Mutation_p.T111A|C2orf3_uc010fft.2_5'UTR	NM_003203	NP_003194	P16383	GCF_HUMAN	hypothetical protein LOC6936	280	Potential.				negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						TGTAGTAATGTTAATCtaaat	0.313													41	75					0	0	1	0	0	
SUCLG1	8802	broad.mit.edu	37	2	84676772	84676772	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:84676772C>T	uc002son.2	-	2	394	c.201_splice	c.e2+1	p.Q67_splice	SUCLG1_uc010ysk.1_Splice_Site_p.Q54_splice	NM_003849	NP_003840	P53597	SUCA_HUMAN	succinate-CoA ligase, GDP-forming alpha subunit						tricarboxylic acid cycle		ATP citrate synthase activity|GTP binding|succinate-CoA ligase (GDP-forming) activity				0					Succinic acid(DB00139)	GATATACATACCTGTTTGCCA	0.299													13	42					0	0	1	0	0	
DNAH6	1768	broad.mit.edu	37	2	84785047	84785047	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:84785047T>C	uc010fgb.2	+	11	1928	c.1791T>C	c.(1789-1791)ATT>ATC	p.I597I	DNAH6_uc002soo.2_Silent_p.I176I|DNAH6_uc002sop.2_Silent_p.I176I	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	597	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						ACACAATTATTTCTCAAATAA	0.274													27	62					0	0	1	0	0	
ATOH8	84913	broad.mit.edu	37	2	85981435	85981435	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:85981435A>C	uc002sqn.2	+	1	527	c.123A>C	c.(121-123)AAA>AAC	p.K41N	ATOH8_uc002sqm.3_Missense_Mutation_p.K41N	NM_032827	NP_116216	Q96SQ7	ATOH8_HUMAN	atonal homolog 8	41					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						ACGGCTATAAAACTTTCCGAC	0.667													11	31					0	0	1	0	0	
POLR1A	25885	broad.mit.edu	37	2	86270116	86270116	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:86270116C>T	uc002sqs.2	-	23	3717	c.3338G>A	c.(3337-3339)CGC>CAC	p.R1113H	POLR1A_uc010ytb.1_Missense_Mutation_p.R479H|POLR1A_uc002sqt.1_Missense_Mutation_p.R136H	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	1113					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						CCCAGGGCTGCGGCCATTGCG	0.542													30	70					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	89111204	89111204	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:89111204G>A	uc002sth.1	-	2		c.163C>T								full-length cDNA clone CS0DL003YK18 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human).																		TGACGAAGGCGAAGAACTAGA	0.572													10	31					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	89339731	89339731	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:89339731T>G	uc010ytr.1	-	64		c.6128A>C			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGGGAAACTGTTAGCCTGTTG	0.527													42	87					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	90078270	90078270	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:90078270G>T	uc010fhm.2	+	14		c.1660G>T								Parts of antibodies, mostly variable regions.																		GGAGCCTGAAGATTTTGCAGT	0.488													17	39					1.77063e-15	2.01907e-15	1	1	0	
Unknown	0	broad.mit.edu	37	2	90139576	90139576	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:90139576A>G	uc010fhm.2	+	18		c.2369A>G								Parts of antibodies, mostly variable regions.																		TATAATAGTTACCCTCCCACA	0.517													19	43					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	95601102	95601102	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:95601102T>C	uc002stv.1	-	2		c.147A>G								Homo sapiens cDNA FLJ44118 fis, clone TESTI4047069.																		CTTGTAAATGTCACCAACCCA	0.368													9	19					0	0	1	0	0	
MRPS5	64969	broad.mit.edu	37	2	95766633	95766633	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:95766633T>C	uc002sub.2	-	9	1035	c.817A>G	c.(817-819)AAC>GAC	p.N273D	MRPS5_uc002suc.2_RNA	NM_031902	NP_114108	P82675	RT05_HUMAN	mitochondrial ribosomal protein S5	273	S5 DRBM.				translation	mitochondrion|ribosome	protein binding|RNA binding|structural constituent of ribosome			ovary(2)|central_nervous_system(1)	3						ACTGCTCTGTTCTTTGCCTGA	0.269													14	23					0	0	1	0	0	
ZNF514	84874	broad.mit.edu	37	2	95815627	95815627	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:95815627C>A	uc002sue.1	-	5	977	c.603G>T	c.(601-603)AAG>AAT	p.K201N	ZNF514_uc002sud.1_Missense_Mutation_p.K274N	NM_032788	NP_116177	Q96K75	ZN514_HUMAN	zinc finger protein 514	201					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TACAAGATTTCTTTTCTGGGT	0.438													67	108					1.42676e-28	1.73645e-28	1	1	0	
KCNIP3	30818	broad.mit.edu	37	2	96048135	96048135	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:96048135C>T	uc002sup.2	+	7	681	c.566C>T	c.(565-567)GCC>GTC	p.A189V	KCNIP3_uc002suq.2_Missense_Mutation_p.A163V	NM_013434	NP_038462	Q9Y2W7	CSEN_HUMAN	Kv channel interacting protein 3 isoform 1	189	EF-hand 3.				apoptosis|signal transduction|transcription, DNA-dependent	endoplasmic reticulum|Golgi apparatus|nucleus|plasma membrane	calcium ion binding|DNA binding|potassium channel activity|transcription corepressor activity|voltage-gated ion channel activity			breast(2)|ovary(1)	3				READ - Rectum adenocarcinoma(193;0.13)		GAGATGCTGGCCATCATGAAG	0.662													11	11					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	96593016	96593016	+	RNA	SNP	C	T	T	rs79307257	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:96593016C>T	uc002sva.1	-	9		c.389G>A			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		GAAACAGAATCTTTCTCATCA	0.318													17	56					0	0	1	0	0	
LOC729234	729234	broad.mit.edu	37	2	96687180	96687180	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:96687180C>T	uc010fht.2	+	3		c.356C>T				NR_003698				Homo sapiens fumarylacetoacetate hydrolase domain containing 2 pseudogene (LOC729234), non-coding RNA.												0						ACCCAGGTGTCGGTGTATTCA	0.552													7	14					0	0	1	0	0	
ADRA2B	151	broad.mit.edu	37	2	96781139	96781139	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:96781139C>T	uc002svi.2	-	1	750	c.750G>A	c.(748-750)TCG>TCA	p.S250S		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	250	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	CAGTGGACTTCGAGTGTCCGT	0.652													18	26					0	0	1	0	0	
ITPRIPL1	150771	broad.mit.edu	37	2	96992397	96992397	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:96992397G>A	uc002svx.2	+	3	363	c.28G>A	c.(28-30)GCT>ACT	p.A10T	ITPRIPL1_uc010yuk.1_Missense_Mutation_p.A2T|ITPRIPL1_uc002svy.2_Missense_Mutation_p.A18T|ITPRIPL1_uc010yul.1_Missense_Mutation_p.A2T	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	10						integral to membrane				central_nervous_system(2)|ovary(1)	3						GGCCTCCATGGCTGTGATAAG	0.527													32	85					0	0	1	0	0	
FAHD2B	151313	broad.mit.edu	37	2	97749770	97749770	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:97749770A>C	uc002sxm.2	-	7	948	c.797T>G	c.(796-798)TTT>TGT	p.F266C		NM_199336	NP_955368	Q6P2I3	FAH2B_HUMAN	fumarylacetoacetate hydrolase domain containing	266							hydrolase activity|metal ion binding				0						AAAGGTAACAAACCTGGAGCA	0.552													17	30					0	0	1	0	0	
ANKRD36B	57730	broad.mit.edu	37	2	98165944	98165944	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:98165944A>G	uc010yvc.1	-	20	1695	c.1415T>C	c.(1414-1416)GTC>GCC	p.V472A	ANKRD36B_uc010yve.1_RNA	NM_025190	NP_079466	Q8N2N9	AN36B_HUMAN	ankyrin repeat domain 36B	472											0						ATCTTCCTTGACACTTGTAGC	0.294													6	7					0	0	1	0	0	
ZAP70	7535	broad.mit.edu	37	2	98341627	98341627	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:98341627G>A	uc002syd.1	+	4	682	c.475G>A	c.(475-477)GAG>AAG	p.E159K	ZAP70_uc010yvf.1_Missense_Mutation_p.E159K|ZAP70_uc002sye.1_Missense_Mutation_p.E49K	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	159	Interdomain A.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						GACGGCCCACGAGCGGATGCC	0.642													25	34					0	0	1	0	0	
ZAP70	7535	broad.mit.edu	37	2	98354262	98354262	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:98354262G>A	uc002syd.1	+	12	1732	c.1525G>A	c.(1525-1527)GAA>AAA	p.E509K	ZAP70_uc002sye.1_Missense_Mutation_p.E399K|ZAP70_uc002syf.1_Missense_Mutation_p.E202K	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	509	Protein kinase.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						GTACGCACCCGAATGCATCAA	0.637													56	146					0	0	1	0	0	
TMEM131	23505	broad.mit.edu	37	2	98409193	98409193	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:98409193G>A	uc002syh.3	-	31	4029	c.3800C>T	c.(3799-3801)TCG>TTG	p.S1267L		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1267						integral to membrane				ovary(4)|central_nervous_system(2)	6						CACTGTGTTCGAATCTAAGAC	0.527													21	35					0	0	1	0	0	
TMEM131	23505	broad.mit.edu	37	2	98431743	98431743	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:98431743A>C	uc002syh.3	-	13	1440	c.1211T>G	c.(1210-1212)TTT>TGT	p.F404C	TMEM131_uc010yvg.1_RNA	NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	404						integral to membrane				ovary(4)|central_nervous_system(2)	6						TTTCCCAGAAAACTGAGATGG	0.303													12	41					0	0	1	0	0	
LIPT1	51601	broad.mit.edu	37	2	99779151	99779151	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:99779151A>G	uc002szm.3	+	4	1071	c.731A>G	c.(730-732)CAC>CGC	p.H244R	MRPL30_uc002szl.1_Intron|LIPT1_uc002szn.3_Missense_Mutation_p.H244R|LIPT1_uc002szo.3_Missense_Mutation_p.H244R|LIPT1_uc002szp.3_Missense_Mutation_p.H244R|LIPT1_uc002szq.3_Missense_Mutation_p.H244R|MRPL30_uc002szr.2_Intron	NM_145198	NP_660199	Q9Y234	LIPT_HUMAN	lipoyltransferase 1 precursor	244					lipid metabolic process|protein lipoylation	mitochondrion	acyltransferase activity				0					Lipoic Acid(DB00166)	ATTGATAATCACATTCACCTA	0.383													23	46					0	0	1	0	0	
LYG2	254773	broad.mit.edu	37	2	99858912	99858912	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:99858912G>A	uc002szw.1	-	6	667	c.554C>T	c.(553-555)GCG>GTG	p.A185V	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_3'UTR	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	185					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						GGTGGCAATCGCTTCAATTCC	0.403													45	113					0	0	1	0	0	
EIF5B	9669	broad.mit.edu	37	2	100009490	100009490	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:100009490G>T	uc002tab.2	+	18	2993	c.2809G>T	c.(2809-2811)GAC>TAC	p.D937Y	EIF5B_uc010yvq.1_5'Flank	NM_015904	NP_056988	O60841	IF2P_HUMAN	eukaryotic translation initiation factor 5B	937					regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			ovary(2)|pancreas(1)	3						TCTTGGAAAAGACCTGGAGAA	0.338													18	39					9.95505e-16	1.13788e-15	1	1	0	
EIF5B	9669	broad.mit.edu	37	2	100011005	100011005	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:100011005A>C	uc002tab.2	+	20	3230	c.3046A>C	c.(3046-3048)AAA>CAA	p.K1016Q	EIF5B_uc010yvq.1_5'UTR	NM_015904	NP_056988	O60841	IF2P_HUMAN	eukaryotic translation initiation factor 5B	1016					regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			ovary(2)|pancreas(1)	3						AGTGCATAAAAAAGATGTTAT	0.383													89	186					0	0	1	0	0	
REV1	51455	broad.mit.edu	37	2	100037985	100037985	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:100037985T>G	uc002tad.2	-	11	2019	c.1807A>C	c.(1807-1809)AAA>CAA	p.K603Q	REV1_uc002tac.2_Missense_Mutation_p.K602Q	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	603	UmuC.				DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						GCAGCACATTTCGTCTGGTCT	0.378								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					41	99					0	0	1	0	0	
AFF3	3899	broad.mit.edu	37	2	100181988	100181988	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:100181988G>T	uc002tag.2	-	19	3316	c.3080C>A	c.(3079-3081)TCT>TAT	p.S1027Y	AFF3_uc002taf.2_Missense_Mutation_p.S1052Y	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1027					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CGTATAAGGAGATTTGGATTC	0.453													13	140					4.93089e-13	5.49801e-13	1	1	0	
AFF3	3899	broad.mit.edu	37	2	100209899	100209899	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:100209899A>C	uc002tag.2	-	14	2460	c.2224T>G	c.(2224-2226)TTC>GTC	p.F742V	AFF3_uc002taf.2_Missense_Mutation_p.F767V|AFF3_uc010fiq.1_Missense_Mutation_p.F742V|AFF3_uc010yvr.1_Missense_Mutation_p.F895V|AFF3_uc002tah.1_Missense_Mutation_p.F767V	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	742					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						AGTGTGTAGAACTGCTCCTCC	0.592													43	86					0	0	1	0	0	
NPAS2	4862	broad.mit.edu	37	2	101549440	101549440	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:101549440G>T	uc002tap.1	+	4	536	c.250G>T	c.(250-252)GAA>TAA	p.E84*	NPAS2_uc010yvt.1_Nonsense_Mutation_p.E149*	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	84	PAS 1.				central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						CAGTAATGAAGAATTCACCCA	0.398													24	48					3.7963e-18	4.42695e-18	1	1	0	
MAP4K4	9448	broad.mit.edu	37	2	102456429	102456429	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:102456429C>T	uc002tbg.2	+	10	977	c.922C>T	c.(922-924)CGT>TGT	p.R308C	MAP4K4_uc002tbc.2_Missense_Mutation_p.R308C|MAP4K4_uc002tbd.2_Missense_Mutation_p.R308C|MAP4K4_uc002tbe.2_Missense_Mutation_p.R308C|MAP4K4_uc002tbf.2_Missense_Mutation_p.R308C|MAP4K4_uc010yvy.1_Missense_Mutation_p.R308C|MAP4K4_uc002tbh.2_Missense_Mutation_p.R308C|MAP4K4_uc002tbi.2_Intron|MAP4K4_uc010yvz.1_Missense_Mutation_p.R288C|MAP4K4_uc010fiw.1_Missense_Mutation_p.R150C|MAP4K4_uc002tbj.1_Missense_Mutation_p.R204C	NM_145687	NP_663720	O95819	M4K4_HUMAN	mitogen-activated protein kinase kinase kinase	308					intracellular protein kinase cascade|regulation of JNK cascade|response to stress	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			stomach(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TCATATAGATCGTACCAGGAA	0.403													17	61					0	0	1	0	0	
IL1R2	7850	broad.mit.edu	37	2	102636172	102636172	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:102636172G>A	uc002tbm.2	+	5	815	c.586G>A	c.(586-588)GAT>AAT	p.D196N	IL1R2_uc002tbn.2_Missense_Mutation_p.D196N|IL1R2_uc002tbo.1_Missense_Mutation_p.D196N	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	196	Extracellular (Potential).|Ig-like C2-type 2.				immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	ACTCGTACACGATGTGGCCCT	0.428													11	23					0	0	1	0	0	
IL18R1	8809	broad.mit.edu	37	2	103006646	103006646	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:103006646A>G	uc002tbw.3	+	9	1230	c.1080A>G	c.(1078-1080)AGA>AGG	p.R360R	IL18R1_uc010ywc.1_Silent_p.R359R|IL18R1_uc010ywd.1_Silent_p.R204R|IL18R1_uc010fiy.2_Silent_p.R360R	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	360	Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						TATTTTATAGACATTTAACGA	0.338													19	40					0	0	1	0	0	
IL18RAP	8807	broad.mit.edu	37	2	103053710	103053710	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:103053710C>T	uc002tbx.2	+	6	1102	c.618C>T	c.(616-618)ATC>ATT	p.I206I	IL18RAP_uc010fiz.2_Silent_p.I64I	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	206	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						GCAACCGAATCGTAGTGGATG	0.388													33	61					0	0	1	0	0	
SLC9A4	389015	broad.mit.edu	37	2	103142801	103142801	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:103142801C>A	uc002tbz.3	+	11	2491	c.2034C>A	c.(2032-2034)TTC>TTA	p.F678L		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	678	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						CTGCTGGGTTCTCAGGTAAGC	0.388													33	54					1.61788e-16	1.85964e-16	1	1	0	
SLC9A2	6549	broad.mit.edu	37	2	103281693	103281693	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:103281693G>A	uc002tca.2	+	3	1030	c.888G>A	c.(886-888)GCG>GCA	p.A296A		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	296	Helical; Name=H/M6; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						GCTTTATAGCGGCATTTACTA	0.438													50	91					0	0	1	0	0	
TMEM182	130827	broad.mit.edu	37	2	103431205	103431205	+	Splice_Site	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:103431205A>C	uc010fjb.2	+	5	657	c.470_splice	c.e5-2	p.G157_splice	TMEM182_uc002tcc.3_Splice_Site_p.G114_splice|TMEM182_uc002tcd.3_Splice_Site_p.G61_splice|TMEM182_uc010ywe.1_Splice_Site	NM_144632	NP_653233	Q6ZP80	TM182_HUMAN	transmembrane protein 182 precursor							integral to membrane					0						CATCCTTCTCAGGCATCCTAT	0.448													8	24					0	0	1	0	0	
TGFBRAP1	9392	broad.mit.edu	37	2	105915107	105915107	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:105915107C>T	uc002tcq.2	-	3	828	c.744G>A	c.(742-744)GAG>GAA	p.E248E	TGFBRAP1_uc010fjc.2_Silent_p.E18E|TGFBRAP1_uc002tcr.3_Silent_p.E248E	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	248	CNH.				regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						CAATCACATTCTCCGACCAGT	0.522													26	45					0	0	1	0	0	
ST6GAL2	84620	broad.mit.edu	37	2	107450509	107450509	+	Missense_Mutation	SNP	G	A	A	rs138821621		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:107450509G>A	uc002tdq.2	-	3	1156	c.1037C>T	c.(1036-1038)TCG>TTG	p.S346L	ST6GAL2_uc002tdr.2_Missense_Mutation_p.S346L|ST6GAL2_uc002tds.3_Missense_Mutation_p.S346L	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	346	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TCTTACCTGCGAATTAATGAT	0.393													38	87					0	0	1	0	0	
SLC5A7	60482	broad.mit.edu	37	2	108626988	108626988	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:108626988A>G	uc002tdv.2	+	9	1690	c.1414A>G	c.(1414-1416)ATA>GTA	p.I472V	SLC5A7_uc010ywm.1_Missense_Mutation_p.I225V|SLC5A7_uc010fjj.2_Missense_Mutation_p.I472V|SLC5A7_uc010ywn.1_Missense_Mutation_p.I359V	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	472	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TGATAATGGTATATATAATCA	0.383													35	66					0	0	1	0	0	
SULT1C3	442038	broad.mit.edu	37	2	108875197	108875197	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:108875197C>T	uc010ywo.1	+	5	534	c.534C>T	c.(532-534)GGC>GGT	p.G178G		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	178						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						CAGTTGTTGGCGGGTCCTGGT	0.448													29	44					0	0	1	0	0	
GCC2	9648	broad.mit.edu	37	2	109086173	109086173	+	Nonsense_Mutation	SNP	G	T	T	rs35216570		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:109086173G>T	uc002tec.2	+	6	542	c.388G>T	c.(388-390)GAA>TAA	p.E130*	GCC2_uc002ted.2_Nonsense_Mutation_p.E29*	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	130	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						CTATGTGAAAGAAATTGAAAA	0.323													39	77					6.03168e-27	7.31373e-27	1	1	0	
GCC2	9648	broad.mit.edu	37	2	109087388	109087388	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:109087388G>A	uc002tec.2	+	6	1757	c.1603G>A	c.(1603-1605)GAA>AAA	p.E535K	GCC2_uc002ted.2_Missense_Mutation_p.E434K	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	535	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						tgcccttctcgaaactgtgaa	0.149													47	86					0	0	1	0	0	
GCC2	9648	broad.mit.edu	37	2	109088540	109088540	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:109088540C>T	uc002tec.2	+	6	2909	c.2755C>T	c.(2755-2757)CGA>TGA	p.R919*	GCC2_uc002ted.2_Nonsense_Mutation_p.R818*	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	919	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						AAAAGAATTACGAGATAGGAG	0.279													38	82					0	0	1	0	0	
RANBP2	5903	broad.mit.edu	37	2	109379884	109379884	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:109379884T>G	uc002tem.3	+	20	3015	c.2889T>G	c.(2887-2889)AAT>AAG	p.N963K		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	963					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						ATTACTTTAATTACAATGTTC	0.443													37	61					0	0	1	0	0	
RANBP2	5903	broad.mit.edu	37	2	109380976	109380976	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:109380976A>G	uc002tem.3	+	20	4107	c.3981A>G	c.(3979-3981)ACA>ACG	p.T1327T		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1327					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AAGAACCCACAAGTCATGATA	0.398													42	73					0	0	1	0	0	
RANBP2	5903	broad.mit.edu	37	2	109382509	109382509	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:109382509A>G	uc002tem.3	+	20	5640	c.5514A>G	c.(5512-5514)GGA>GGG	p.G1838G		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1838					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GTCAGGTGGGAACAGGATTTA	0.398													36	105					0	0	1	0	0	
RANBP2	5903	broad.mit.edu	37	2	109383881	109383881	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:109383881G>A	uc002tem.3	+	20	7012	c.6886G>A	c.(6886-6888)GAA>AAA	p.E2296K		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2296					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						CACTGATGAAGAATCTGATGT	0.403													80	139					0	0	1	0	0	
RANBP2	5903	broad.mit.edu	37	2	109400188	109400188	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:109400188A>C	uc002tem.3	+	29	9632	c.9506A>C	c.(9505-9507)AAT>ACT	p.N3169T		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	3169	PPIase cyclophilin-type.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AATACCAATAATTCTCAATTT	0.348													60	79					0	0	1	0	0	
CCDC138	165055	broad.mit.edu	37	2	109489943	109489943	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:109489943C>A	uc002ten.1	+	14	1790	c.1730C>A	c.(1729-1731)TCT>TAT	p.S577Y	CCDC138_uc002teo.1_Intron|CCDC138_uc002tep.1_Missense_Mutation_p.S261Y|CCDC138_uc010fjm.1_Intron	NM_144978	NP_659415	Q96M89	CC138_HUMAN	coiled-coil domain containing 138	577											0						TGTAGCAACTCTTTATTTTTT	0.363													25	63					1.42536e-11	1.56543e-11	1	1	0	
NPHP1	4867	broad.mit.edu	37	2	110901211	110901211	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:110901211G>A	uc002tfn.3	-	16	1696	c.1602C>T	c.(1600-1602)GGC>GGT	p.G534G	NPHP1_uc002tfm.3_Silent_p.G479G|NPHP1_uc002tfl.3_Silent_p.G535G|NPHP1_uc002tfo.3_Silent_p.G416G|NPHP1_uc010ywx.1_Silent_p.G478G|NPHP1_uc010fjv.1_Silent_p.G478G	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	534					actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						AGAAAACACTGCCGTGTGCTT	0.358													19	38					0	0	1	0	0	
BUB1	699	broad.mit.edu	37	2	111419366	111419366	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:111419366G>A	uc002tgc.2	-	10	1122	c.1010C>T	c.(1009-1011)GCG>GTG	p.A337V	BUB1_uc010yxh.1_Missense_Mutation_p.A317V|BUB1_uc010fkb.2_Missense_Mutation_p.A337V|BUB1_uc002tgd.2_Missense_Mutation_p.A337V	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	337					apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		AAGACATGGCGCTCTCAGTTC	0.453													9	117					0	0	1	0	0	
BUB1	699	broad.mit.edu	37	2	111431780	111431780	+	Missense_Mutation	SNP	C	A	A	rs1801328		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:111431780C>A	uc002tgc.2	-	3	220	c.108G>T	c.(106-108)GAG>GAT	p.E36D	BUB1_uc010yxh.1_Missense_Mutation_p.E16D|BUB1_uc010fkb.2_Missense_Mutation_p.E36D|BUB1_uc002tgd.2_Missense_Mutation_p.E36D	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	36	BUB1 N-terminal.|Necessary for kinetochore localization.				apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		CAGGAAAATTCTCTTCTACCC	0.294													20	42					2.39187e-15	2.72483e-15	1	1	0	
ANAPC1	64682	broad.mit.edu	37	2	112583386	112583386	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:112583386T>G	uc002thi.2	-	22	2919	c.2672A>C	c.(2671-2673)GAA>GCA	p.E891A		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	891					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						CTGTGAGGATTCATCAGAAAC	0.289													20	50					0	0	1	0	0	
TTL	150465	broad.mit.edu	37	2	113286288	113286288	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:113286288C>T	uc002thu.2	+	7	1229	c.1050C>T	c.(1048-1050)ATC>ATT	p.I350I	TTL_uc010fkm.1_Intron	NM_153712	NP_714923	Q8NG68	TTL_HUMAN	tubulin tyrosine ligase	350	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity				0		Ovarian(717;0.024)		BRCA - Breast invasive adenocarcinoma(221;6.17e-07)|STAD - Stomach adenocarcinoma(1183;0.00644)		GCCAAGGCATCGTGGACATAG	0.453			T	ETV6	ALL								35	74					0	0	1	0	0	
POLR1B	84172	broad.mit.edu	37	2	113310287	113310287	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:113310287G>A	uc002thw.2	+	7	1632	c.1052G>A	c.(1051-1053)CGA>CAA	p.R351Q	POLR1B_uc010fkn.2_Missense_Mutation_p.R295Q|POLR1B_uc002thx.2_Missense_Mutation_p.R212Q|POLR1B_uc010fko.2_Missense_Mutation_p.R351Q|POLR1B_uc010fkp.2_Intron|POLR1B_uc010yxn.1_Missense_Mutation_p.R389Q|POLR1B_uc002thy.2_Missense_Mutation_p.R212Q|POLR1B_uc010yxo.1_Missense_Mutation_p.R128Q	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	351					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						CTCATGACGCGAAAGCTCTTT	0.408													34	51					0	0	1	0	0	
POLR1B	84172	broad.mit.edu	37	2	113330196	113330196	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:113330196T>G	uc002thw.2	+	13	2712	c.2132T>G	c.(2131-2133)CTG>CGG	p.L711R	POLR1B_uc010fkn.2_Missense_Mutation_p.L655R|POLR1B_uc002thx.2_Missense_Mutation_p.L572R|POLR1B_uc010fko.2_Missense_Mutation_p.L528R|POLR1B_uc010fkp.2_Missense_Mutation_p.L150R|POLR1B_uc010yxn.1_Missense_Mutation_p.L749R|POLR1B_uc002thy.2_Missense_Mutation_p.L572R|POLR1B_uc010yxo.1_Missense_Mutation_p.L488R	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	711					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						GATAACAAACTGTATCGTCTT	0.418													44	91					0	0	1	0	0	
CKAP2L	150468	broad.mit.edu	37	2	113513567	113513567	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:113513567C>T	uc002tie.2	-	4	1460	c.1381G>A	c.(1381-1383)GCA>ACA	p.A461T	CKAP2L_uc002tif.2_Missense_Mutation_p.A50T|CKAP2L_uc010yxp.1_Missense_Mutation_p.A296T|CKAP2L_uc010yxq.1_Missense_Mutation_p.A296T	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	461						centrosome					0						CGATCCTCTGCTGTTGCCTTC	0.398													79	190					0	0	1	0	0	
CKAP2L	150468	broad.mit.edu	37	2	113514428	113514428	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:113514428C>T	uc002tie.2	-	4	599	c.520G>A	c.(520-522)GAA>AAA	p.E174K	CKAP2L_uc002tif.2_Intron|CKAP2L_uc010yxp.1_Missense_Mutation_p.E9K|CKAP2L_uc010yxq.1_Missense_Mutation_p.E9K	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	174						centrosome					0						TCCAAAGATTCGTTTTCAACA	0.323													25	32					0	0	1	0	0	
IL1A	3552	broad.mit.edu	37	2	113532656	113532656	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:113532656T>G	uc002tig.2	-	7	1764	c.804A>C	c.(802-804)GAA>GAC	p.E268D		NM_000575	NP_000566	P01583	IL1A_HUMAN	interleukin 1, alpha proprotein	268					anti-apoptosis|apoptosis|cell proliferation|cellular response to heat|cytokine-mediated signaling pathway|fever generation|immune response|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation vascular endothelial growth factor production|response to copper ion	cytosol|extracellular space	copper ion binding|cytokine activity|interleukin-1 receptor binding			lung(1)	1						ACGCCTGGTTTTCCAGTATCT	0.463													26	46					0	0	1	0	0	
IL1B	3553	broad.mit.edu	37	2	113593779	113593779	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:113593779C>A	uc002tii.1	-	2	115	c.28G>T	c.(28-30)GAA>TAA	p.E10*	IL1B_uc002tih.1_5'Flank	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	10					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	GCCATCATTTCACTGGCGAGC	0.478													24	47					6.32553e-13	7.03772e-13	1	1	0	
PAX8	7849	broad.mit.edu	37	2	114002048	114002048	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:114002048G>A	uc010yxt.1	-	4	511	c.345C>T	c.(343-345)GGC>GGT	p.G115G	PAX8_uc010yxu.1_Silent_p.G115G|PAX8_uc010yxv.1_Silent_p.G115G|PAX8_uc002tjm.2_Silent_p.G115G|PAX8_uc002tjn.2_Silent_p.G115G|PAX8_uc010fku.1_Silent_p.G115G|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	115	Paired.				branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						TGTCACAGACGCCCTCAGCCA	0.577			T	PPARG	follicular thyroid		Thyroid dysgenesis 						98	179					0	0	1	0	0	
CBWD2	150472	broad.mit.edu	37	2	114220051	114220051	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:114220051G>T	uc002tju.2	+	8	820	c.642G>T	c.(640-642)AAG>AAT	p.K214N	CBWD2_uc010yxw.1_Missense_Mutation_p.K178N|CBWD2_uc002tjv.2_Missense_Mutation_p.K178N|CBWD2_uc010fkv.2_RNA	NM_172003	NP_742000	Q8IUF1	CBWD2_HUMAN	COBW domain-containing protein 2	214							ATP binding|protein binding				0						AAGATGTAAAGAAATTAAGAG	0.348													49	87					1.08114e-33	1.32944e-33	1	1	0	
SLC35F5	80255	broad.mit.edu	37	2	114476740	114476740	+	Missense_Mutation	SNP	C	T	T	rs139024940		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:114476740C>T	uc002tku.1	-	14	1911	c.1487G>A	c.(1486-1488)CGA>CAA	p.R496Q	SLC35F5_uc002tkt.2_RNA	NM_025181	NP_079457	Q8WV83	S35F5_HUMAN	solute carrier family 35, member F5	496					transport	integral to membrane					0						CCTCTGAATTCGATGTTTTCT	0.323													20	49					0	0	1	0	0	
ACTR3	10096	broad.mit.edu	37	2	114699791	114699791	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:114699791T>C	uc002tkx.1	+	8	1033	c.713T>C	c.(712-714)TTA>TCA	p.L238S	ACTR3_uc010yyc.1_Missense_Mutation_p.L176S|ACTR3_uc010yyd.1_Missense_Mutation_p.L187S	NM_005721	NP_005712	P61158	ARP3_HUMAN	ARP3 actin-related protein 3 homolog	238					cellular component movement|cilium morphogenesis	Arp2/3 protein complex	actin binding|ATP binding			skin(1)	1						TGCCCAGATTTAGTAAAAGAA	0.313													18	39					0	0	1	0	0	
DDX18	8886	broad.mit.edu	37	2	118582580	118582580	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:118582580G>A	uc002tlh.1	+	9	1370	c.1271G>A	c.(1270-1272)CGA>CAA	p.R424Q		NM_006773	NP_006764	Q9NVP1	DDX18_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	424	Helicase C-terminal.						ATP binding|ATP-dependent RNA helicase activity|RNA binding			breast(2)|ovary(1)|lung(1)	4						AAGAAGAACCGAAAGAAGAAG	0.383													54	82					0	0	1	0	0	
CCDC93	54520	broad.mit.edu	37	2	118766149	118766149	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:118766149C>A	uc002tlj.2	-	2	254	c.128G>T	c.(127-129)AGA>ATA	p.R43I	CCDC93_uc010fld.1_Missense_Mutation_p.R43I	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	43										large_intestine(1)|ovary(1)	2						GCCTTTAATTCTTGCCCTGAA	0.378													59	112					8.33888e-18	9.69929e-18	1	1	0	
PTPN4	5775	broad.mit.edu	37	2	120643418	120643418	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:120643418G>A	uc002tmf.1	+	9	1406	c.635G>A	c.(634-636)CGT>CAT	p.R212H	PTPN4_uc010flj.1_5'UTR	NM_002830	NP_002821	P29074	PTN4_HUMAN	protein tyrosine phosphatase, non-receptor type	212	FERM.					cytoplasm|cytoskeleton|internal side of plasma membrane	cytoskeletal protein binding|non-membrane spanning protein tyrosine phosphatase activity			ovary(2)	2					Alendronate(DB00630)	AACACAGCACGTACCTTAGAA	0.333													59	114					0	0	1	0	0	
EPB41L5	57669	broad.mit.edu	37	2	120918482	120918482	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:120918482C>T	uc002tmg.2	+	21	1945	c.1819C>T	c.(1819-1821)CCC>TCC	p.P607S	EPB41L5_uc010fll.2_Missense_Mutation_p.P607S|EPB41L5_uc010flm.2_Missense_Mutation_p.P411S	NM_020909	NP_065960	Q9HCM4	E41L5_HUMAN	erythrocyte membrane protein band 4.1 like 5	607						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1						GAATAATGTGCCCCTCCCCAA	0.393													55	118					0	0	1	0	0	
RALB	5899	broad.mit.edu	37	2	121043651	121043651	+	Missense_Mutation	SNP	G	A	A	rs139389446		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:121043651G>A	uc002tmk.2	+	3	506	c.316G>A	c.(316-318)GAA>AAA	p.E106K	RALB_uc010yys.1_Missense_Mutation_p.E128K|RALB_uc002tml.2_Missense_Mutation_p.E127K|RALB_uc002tmm.2_RNA|RALB_uc010yyt.1_Intron	NM_002881	NP_002872	P11234	RALB_HUMAN	v-ral simian leukemia viral oncogene homolog B	106					apoptosis|cell cycle|cytokinesis|nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of exocyst assembly|regulation of exocyst localization	cytosol|midbody|plasma membrane	GTP binding|GTPase activity|protein binding			lung(3)	3		Prostate(154;0.122)				AGCAACTGCCGAATTCAGGTA	0.443													23	34					0	0	1	0	0	
RALB	5899	broad.mit.edu	37	2	121047166	121047166	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:121047166C>A	uc002tmk.2	+	4	524	c.334C>A	c.(334-336)CTC>ATC	p.L112I	RALB_uc010yys.1_Missense_Mutation_p.L134I|RALB_uc002tml.2_Missense_Mutation_p.L133I|RALB_uc002tmm.2_RNA|RALB_uc010yyt.1_RNA	NM_002881	NP_002872	P11234	RALB_HUMAN	v-ral simian leukemia viral oncogene homolog B	112					apoptosis|cell cycle|cytokinesis|nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of exocyst assembly|regulation of exocyst localization	cytosol|midbody|plasma membrane	GTP binding|GTPase activity|protein binding			lung(3)	3		Prostate(154;0.122)				GGAACAGATTCTCCGTGTGAA	0.463													26	146					1.42536e-11	1.56543e-11	1	1	0	
GLI2	2736	broad.mit.edu	37	2	121740439	121740439	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:121740439C>T	uc010flp.2	+	10	1696	c.1666C>T	c.(1666-1668)CGC>TGC	p.R556C	GLI2_uc002tmq.1_Missense_Mutation_p.R228C|GLI2_uc002tmr.1_Missense_Mutation_p.R211C|GLI2_uc002tmt.3_Missense_Mutation_p.R228C|GLI2_uc002tmu.3_Missense_Mutation_p.R211C|GLI2_uc002tmw.1_Missense_Mutation_p.R539C	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	556	C2H2-type 4.				axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GCACCAGAATCGCACCCACTC	0.627													22	67					0	0	1	0	0	
CLASP1	23332	broad.mit.edu	37	2	122273287	122273287	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:122273287C>T	uc002tnc.2	-	7	988	c.598G>A	c.(598-600)GAA>AAA	p.E200K	CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.E200K|CLASP1_uc010yza.1_Missense_Mutation_p.E200K|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Missense_Mutation_p.E200K	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	200	HEAT 2.				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					CTCACACGTTCTCCTACATGT	0.473													15	29					0	0	1	0	0	
CLASP1	23332	broad.mit.edu	37	2	122273335	122273335	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:122273335G>A	uc002tnc.2	-	7	940	c.550C>T	c.(550-552)CGA>TGA	p.R184*	CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Nonsense_Mutation_p.R184*|CLASP1_uc010yza.1_Nonsense_Mutation_p.R184*|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_Intron|CLASP1_uc002tng.1_Nonsense_Mutation_p.R184*	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	184	HEAT 2.				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					GCTGCATCTCGAACCTAGATA	0.463													12	22					0	0	1	0	0	
CNTNAP5	129684	broad.mit.edu	37	2	125204342	125204342	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:125204342C>T	uc002tno.2	+	6	1110	c.746C>T	c.(745-747)GCG>GTG	p.A249V	CNTNAP5_uc010flu.2_Missense_Mutation_p.A249V	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	249	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GACAGCAAAGCGCGGCTCAGC	0.582													24	35					0	0	1	0	0	
BIN1	274	broad.mit.edu	37	2	127826515	127826515	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:127826515T>G	uc002tns.1	-	6	849	c.504A>C	c.(502-504)GAA>GAC	p.E168D	BIN1_uc010yzf.1_Missense_Mutation_p.E144D|BIN1_uc010yzg.1_Missense_Mutation_p.E168D|BIN1_uc002tnu.1_Missense_Mutation_p.E168D|BIN1_uc002toa.1_Missense_Mutation_p.E168D|BIN1_uc002tnt.1_Missense_Mutation_p.E168D|BIN1_uc002tnv.1_Missense_Mutation_p.E168D|BIN1_uc002tnw.1_Missense_Mutation_p.E168D|BIN1_uc002tnx.1_Missense_Mutation_p.E168D|BIN1_uc002tny.1_Missense_Mutation_p.E168D|BIN1_uc002tnz.1_Missense_Mutation_p.E168D|BIN1_uc002tob.1_Missense_Mutation_p.E168D|BIN1_uc002toc.1_Missense_Mutation_p.E168D	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	168	BAR.				cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		CAATTTTGGCTTCATCCTTCT	0.627													14	45					0	0	1	0	0	
CYP27C1	339761	broad.mit.edu	37	2	127953001	127953001	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:127953001A>G	uc002tod.2	-	5	760	c.629T>C	c.(628-630)ATT>ACT	p.I210T		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	210						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		ATTCTTCACAATCTCCCGGTA	0.532													18	43					0	0	1	0	0	
ERCC3	2071	broad.mit.edu	37	2	128028934	128028934	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:128028934C>T	uc002toh.1	-	12	2018	c.1923G>A	c.(1921-1923)GGG>GGA	p.G641G	ERCC3_uc002toe.1_Silent_p.G396G|ERCC3_uc002tof.1_Silent_p.G577G|ERCC3_uc002tog.1_Silent_p.G577G	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	641	Helicase C-terminal.				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		GAAGCACCCGCCCTAGCCTTT	0.502			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				85	161					0	0	1	0	0	
ERCC3	2071	broad.mit.edu	37	2	128051178	128051178	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:128051178A>G	uc002toh.1	-	2	240	c.145T>C	c.(145-147)TCA>CCA	p.S49P	ERCC3_uc002toe.1_5'Flank|ERCC3_uc002tof.1_5'UTR|ERCC3_uc002tog.1_5'UTR|ERCC3_uc010flx.1_5'UTR|ERCC3_uc010yzh.1_RNA|ERCC3_uc010fly.2_Missense_Mutation_p.S49P	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	49					cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		TTGGTGCCTGACTCATCCACC	0.602			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				20	39					0	0	1	0	0	
MAP3K2	10746	broad.mit.edu	37	2	128079820	128079820	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:128079820T>G	uc002toj.1	-	11	912	c.847A>C	c.(847-849)ACT>CCT	p.T283P		NM_006609	NP_006600	Q9Y2U5	M3K2_HUMAN	mitogen-activated protein kinase kinase kinase	283					activation of JUN kinase activity|cellular response to mechanical stimulus	nucleus	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein kinase binding			lung(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0706)		CTTGGAAAAGTTTTACGACCT	0.338													21	33					0	0	1	0	0	
MYO7B	4648	broad.mit.edu	37	2	128346073	128346073	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:128346073G>T	uc002top.2	+	15	1850	c.1797G>T	c.(1795-1797)GAG>GAT	p.E599D		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	599	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		AGTTAGCAGAGACCAAGCTGG	0.547													22	53					5.45024e-15	6.18484e-15	1	1	0	
WDR33	55339	broad.mit.edu	37	2	128464123	128464123	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:128464123C>T	uc002tpg.1	-	22	3968	c.3785G>A	c.(3784-3786)CGA>CAA	p.R1262Q		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	1262					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		TGGGCCCCCTCGGCCTGAAAC	0.488													36	55					0	0	1	0	0	
WDR33	55339	broad.mit.edu	37	2	128471562	128471562	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:128471562C>T	uc002tpg.1	-	18	3086	c.2903G>A	c.(2902-2904)GGC>GAC	p.G968D		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	968					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		TGACATCGGGCCCATGTGATG	0.602													24	35					0	0	1	0	0	
UGGT1	56886	broad.mit.edu	37	2	128878797	128878797	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:128878797G>A	uc002tps.2	+	10	1176	c.998G>A	c.(997-999)CGA>CAA	p.R333Q	UGGT1_uc010fme.1_Missense_Mutation_p.R208Q|UGGT1_uc002tpr.2_Missense_Mutation_p.R309Q	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	333					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						ACTGCTGCTCGAATCTTGGCT	0.373													29	68					0	0	1	0	0	
UGGT1	56886	broad.mit.edu	37	2	128914829	128914829	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:128914829A>C	uc002tps.2	+	22	2442	c.2264A>C	c.(2263-2265)GAT>GCT	p.D755A	UGGT1_uc010fme.1_Missense_Mutation_p.D630A|UGGT1_uc002tpr.2_Missense_Mutation_p.D731A	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	755					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TCTACAGATGATTCTTTTATT	0.363													23	38					0	0	1	0	0	
POTEF	728378	broad.mit.edu	37	2	130832596	130832596	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:130832596C>T	uc010fmh.2	-	17	2849	c.2449G>A	c.(2449-2451)GAG>AAG	p.E817K		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	817	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						GTCATCTTCTCGCGGTTGGCC	0.597													95	137					0	0	1	0	0	
SMPD4	55627	broad.mit.edu	37	2	130911999	130911999	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:130911999A>C	uc002tqq.1	-	16	2147	c.1627T>G	c.(1627-1629)TTC>GTC	p.F543V	SMPD4_uc002tqo.1_Missense_Mutation_p.F75V|SMPD4_uc002tqp.1_Missense_Mutation_p.F282V|SMPD4_uc010yzy.1_Missense_Mutation_p.F292V|SMPD4_uc010yzz.1_Missense_Mutation_p.F207V|SMPD4_uc002tqr.1_Missense_Mutation_p.F514V|SMPD4_uc002tqs.1_Missense_Mutation_p.F411V|SMPD4_uc002tqt.1_Missense_Mutation_p.F392V|SMPD4_uc010zaa.1_Missense_Mutation_p.F401V|SMPD4_uc010zab.1_Missense_Mutation_p.F441V|SMPD4_uc010zac.1_Missense_Mutation_p.F284V|SMPD4_uc010zad.1_Missense_Mutation_p.F179V	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	504					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	GGGGCCGTGAAGAGTCGGTGC	0.627													6	5					0	0	1	0	0	
GPR148	344561	broad.mit.edu	37	2	131487111	131487111	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:131487111C>T	uc002trv.1	+	1	389	c.387C>T	c.(385-387)TTC>TTT	p.F129F		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	129	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					ATGCTGTCTTCGCCGCCTGCA	0.602													15	20					0	0	1	0	0	
FAM123C	205147	broad.mit.edu	37	2	131521511	131521511	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:131521511G>A	uc002trw.2	+	2	2056	c.1866G>A	c.(1864-1866)TCG>TCA	p.S622S	FAM123C_uc010fmv.2_Silent_p.S622S|FAM123C_uc010fms.1_Silent_p.S622S|FAM123C_uc010fmt.1_Silent_p.S622S|FAM123C_uc010fmu.1_Silent_p.S622S	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	622										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CAGCCACTTCGACAACAGATA	0.572													20	44					0	0	1	0	0	
ARHGEF4	50649	broad.mit.edu	37	2	131796522	131796522	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:131796522G>A	uc002tsa.1	+	6	1184	c.664G>A	c.(664-666)GAA>AAA	p.E222K	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Missense_Mutation_p.E222K|ARHGEF4_uc010fmx.1_Missense_Mutation_p.E222K|ARHGEF4_uc002tsc.1_5'Flank	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	222	SH3.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		GGACGTCATCGAAGTGATGGA	0.617													19	28					0	0	1	0	0	
ARHGEF4	50649	broad.mit.edu	37	2	131801887	131801887	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:131801887G>A	uc002tsa.1	+	12	2135	c.1615G>A	c.(1615-1617)GAC>AAC	p.D539N	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Missense_Mutation_p.D539N|ARHGEF4_uc010fmx.1_Missense_Mutation_p.D479N|ARHGEF4_uc002tsc.1_Missense_Mutation_p.D82N	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	539	PH.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		GCTCCGCCGCGACGTGTTGTA	0.637													4	10					0	0	1	0	0	
NCKAP5	344148	broad.mit.edu	37	2	133489398	133489398	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:133489398G>A	uc002ttp.2	-	17	5729	c.5355C>T	c.(5353-5355)AGC>AGT	p.S1785S	NCKAP5_uc002ttq.2_Silent_p.S466S	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1785							protein binding				0						GAACAATGGCGCTATCTGCAG	0.567													22	40					0	0	1	0	0	
NCKAP5	344148	broad.mit.edu	37	2	133539768	133539768	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:133539768A>C	uc002ttp.2	-	14	4990	c.4616T>G	c.(4615-4617)GTC>GGC	p.V1539G	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1539							protein binding				0						AAACCCCAAGACTTTTGCATC	0.398													28	64					0	0	1	0	0	
MGAT5	4249	broad.mit.edu	37	2	135107416	135107416	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:135107416G>A	uc002ttv.1	+	9	1298	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K		NM_002410	NP_002401	Q09328	MGT5A_HUMAN	N-acetylglucosaminyltransferase V	385	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0964)		TACTGAACCCGAATTTAATCA	0.423													30	84					0	0	1	0	0	
ACMSD	130013	broad.mit.edu	37	2	135616864	135616864	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:135616864T>G	uc002ttz.2	+	3	203	c.136T>G	c.(136-138)TTC>GTC	p.F46V	ACMSD_uc002tua.2_Silent_p.S4S	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	46					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		TGGGAAAGTCTTCAGAGTGGT	0.433													30	50					0	0	1	0	0	
YSK4	80122	broad.mit.edu	37	2	135738478	135738478	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:135738478T>C	uc002tue.1	-	9	3864	c.3833A>G	c.(3832-3834)TAC>TGC	p.Y1278C	YSK4_uc002tuf.1_Missense_Mutation_p.Y460C|YSK4_uc010fnc.1_Missense_Mutation_p.Y412C|YSK4_uc010fnd.1_Missense_Mutation_p.Y1165C|YSK4_uc010zbg.1_Missense_Mutation_p.Y410C|YSK4_uc002tuh.3_Missense_Mutation_p.Y1006C|YSK4_uc002tui.3_3'UTR	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1278	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TGCTCCGATGTAAAACATGGC	0.512													16	35					0	0	1	0	0	
YSK4	80122	broad.mit.edu	37	2	135741299	135741299	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:135741299C>A	uc002tue.1	-	8	3200	c.3169G>T	c.(3169-3171)GAA>TAA	p.E1057*	YSK4_uc002tuf.1_Nonsense_Mutation_p.E239*|YSK4_uc010fnc.1_Nonsense_Mutation_p.E239*|YSK4_uc010fnd.1_Nonsense_Mutation_p.E944*|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Nonsense_Mutation_p.E785*|YSK4_uc002tui.3_Nonsense_Mutation_p.E1074*	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1057							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		AGGATAGGTTCTTCAGACTTT	0.378													35	66					4.3181e-19	5.06354e-19	1	1	0	
YSK4	80122	broad.mit.edu	37	2	135756376	135756376	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:135756376T>C	uc002tue.1	-	5	537	c.506A>G	c.(505-507)AAC>AGC	p.N169S	YSK4_uc010fne.1_Missense_Mutation_p.N141S|YSK4_uc002tuf.1_Missense_Mutation_p.N169S|YSK4_uc010fnc.1_Missense_Mutation_p.N169S|YSK4_uc010fnd.1_Intron|YSK4_uc010zbg.1_Missense_Mutation_p.N169S|YSK4_uc002tui.3_Missense_Mutation_p.N186S	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	169							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CTTGGAAATGTTCAGTTCTAA	0.428													27	51					0	0	1	0	0	
RAB3GAP1	22930	broad.mit.edu	37	2	135815651	135815651	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:135815651G>A	uc002tuj.2	+	3	170	c.145G>A	c.(145-147)GAA>AAA	p.E49K	RAB3GAP1_uc010fnf.2_Missense_Mutation_p.E49K|RAB3GAP1_uc010fng.2_5'UTR	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	49						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		AAAGCCACTCGAAAAGGTCAG	0.373													14	29					0	0	1	0	0	
RAB3GAP1	22930	broad.mit.edu	37	2	135878432	135878432	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:135878432G>A	uc002tuj.2	+	8	717	c.692G>A	c.(691-693)CGA>CAA	p.R231Q	RAB3GAP1_uc010fnf.2_Missense_Mutation_p.R231Q|RAB3GAP1_uc010fng.2_Missense_Mutation_p.R56Q|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	231						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		ATTGCTATTCGATTTACCTAT	0.368													49	112					0	0	1	0	0	
R3HDM1	23518	broad.mit.edu	37	2	136362556	136362556	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:136362556A>G	uc002tuo.2	+	3	511	c.141A>G	c.(139-141)GAA>GAG	p.E47E	R3HDM1_uc010fni.2_Silent_p.E45E|R3HDM1_uc002tup.2_Intron	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	47							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		AGAAGAATGAACATTGTATTG	0.299													22	66					0	0	1	0	0	
R3HDM1	23518	broad.mit.edu	37	2	136393692	136393692	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:136393692A>C	uc002tuo.2	+	11	1212	c.842A>C	c.(841-843)AAA>ACA	p.K281T	R3HDM1_uc010fni.2_Missense_Mutation_p.K279T|R3HDM1_uc002tup.2_Missense_Mutation_p.K225T|R3HDM1_uc010zbh.1_Missense_Mutation_p.K113T	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	281							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		AGAAGAAGCAAATCTATAGAA	0.353													44	99					0	0	1	0	0	
THSD7B	80731	broad.mit.edu	37	2	137814328	137814328	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:137814328G>A	uc002tva.1	+	2	385	c.385G>A	c.(385-387)GAA>AAA	p.E129K	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.E19K	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGAAATATGCGAACACTTTGC	0.517													74	111					0	0	1	0	0	
THSD7B	80731	broad.mit.edu	37	2	137988724	137988724	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:137988724T>C	uc002tva.1	+	7	1741	c.1741T>C	c.(1741-1743)TCC>CCC	p.S581P	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.S471P	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GGAGTGGTCATCCTGTTCCCA	0.512													10	22					0	0	1	0	0	
THSD7B	80731	broad.mit.edu	37	2	138400060	138400060	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:138400060C>T	uc002tva.1	+	20	3715	c.3715C>T	c.(3715-3717)CGA>TGA	p.R1239*	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CATTTTAGGTCGAATGAGCCG	0.473													44	86					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	139046239	139046239	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:139046239C>A	uc010zbk.1	-	1	202	c.59G>T	c.(58-60)AGA>ATA	p.R20I						SubName: Full=cDNA, FLJ79100, highly similar to 14-3-3 protein epsilon (14-3-3E);																		TAGGAGGTTTCTTTCTTCATC	0.458													34	72					2.42023e-17	2.79957e-17	1	1	0	
SPOPL	339745	broad.mit.edu	37	2	139316695	139316695	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:139316695A>G	uc002tvh.2	+	6	984	c.584A>G	c.(583-585)GAA>GGA	p.E195G		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	195						nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		AATCTCTGGGAAAACACAAGA	0.373													51	104					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141027830	141027830	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141027830T>C	uc002tvj.1	-	86	14200	c.13228A>G	c.(13228-13230)ACA>GCA	p.T4410A		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4410	Extracellular (Potential).|EGF-like 14.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGTACATTTGTCTCGGGGTCC	0.413										TSP Lung(27;0.18)			30	65					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141108514	141108514	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141108514G>T	uc002tvj.1	-	77	12716	c.11744C>A	c.(11743-11745)TCT>TAT	p.S3915Y		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3915	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTCAATATGAGAAATTTGTTG	0.348										TSP Lung(27;0.18)			48	99					3.86236e-30	4.71964e-30	1	1	0	
LRP1B	53353	broad.mit.edu	37	2	141128375	141128375	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141128375G>A	uc002tvj.1	-	71	11884	c.10912C>T	c.(10912-10914)CGG>TGG	p.R3638W		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3638	Extracellular (Potential).|LDL-receptor class A 29.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTTTGCACCGAAACTGATCT	0.383										TSP Lung(27;0.18)			56	97					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141143550	141143550	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141143550G>A	uc002tvj.1	-	67	11415	c.10443C>T	c.(10441-10443)TTC>TTT	p.F3481F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3481	Extracellular (Potential).|LDL-receptor class A 25.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTTACACTGGAATTCATGAG	0.403										TSP Lung(27;0.18)			43	110					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141201904	141201904	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141201904T>C	uc002tvj.1	-	65	11261	c.10289A>G	c.(10288-10290)GAC>GGC	p.D3430G		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3430	Extracellular (Potential).|LDL-receptor class A 23.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTTACGACAGTCTCTTTCATC	0.348										TSP Lung(27;0.18)			45	94					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141245224	141245224	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141245224G>A	uc002tvj.1	-	58	10177	c.9205C>T	c.(9205-9207)CGC>TGC	p.R3069C		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3069	Extracellular (Potential).|LDL-receptor class B 28.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTATTTATGCGACTGCCATTG	0.308										TSP Lung(27;0.18)			34	85					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141291621	141291621	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141291621G>A	uc002tvj.1	-	47	8703	c.7731C>T	c.(7729-7731)TGC>TGT	p.C2577C		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2577	Extracellular (Potential).|LDL-receptor class A 12.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGTTGTCTCCGCAGTCATTTT	0.388										TSP Lung(27;0.18)			34	55					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141460006	141460006	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141460006A>G	uc002tvj.1	-	38	7112	c.6140T>C	c.(6139-6141)ATC>ACC	p.I2047T		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2047	Extracellular (Potential).|LDL-receptor class B 21.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTCATAGTCGATGGAGATGCC	0.398										TSP Lung(27;0.18)			24	79					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141747168	141747168	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141747168C>A	uc002tvj.1	-	17	3675	c.2703G>T	c.(2701-2703)AAG>AAT	p.K901N	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	901	Extracellular (Potential).|LDL-receptor class A 4.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAAGCCATCTCTTGGGGATGC	0.413										TSP Lung(27;0.18)			42	88					1.59361e-14	1.79967e-14	1	1	0	
LRP1B	53353	broad.mit.edu	37	2	141762987	141762987	+	Missense_Mutation	SNP	G	A	A	rs139524624		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141762987G>A	uc002tvj.1	-	15	3392	c.2420C>T	c.(2419-2421)ACA>ATA	p.T807I	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	807	Extracellular (Potential).|EGF-like 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAAGCAAAGTGTACTACAGCC	0.448										TSP Lung(27;0.18)			31	47					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141773306	141773306	+	Missense_Mutation	SNP	C	T	T	rs143197572	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141773306C>T	uc002tvj.1	-	13	3121	c.2149G>A	c.(2149-2151)GAT>AAT	p.D717N	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	717	Extracellular (Potential).|LDL-receptor class B 8.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCAATATGATCGTAATAGGCA	0.388										TSP Lung(27;0.18)			22	44					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141812693	141812693	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141812693G>T	uc002tvj.1	-	10	2516	c.1544C>A	c.(1543-1545)TCA>TAA	p.S515*	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	515	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACTTTTGCATGACCTGCCATC	0.423										TSP Lung(27;0.18)			20	45					1.96292e-10	2.12899e-10	1	1	0	
LRP1B	53353	broad.mit.edu	37	2	141816481	141816481	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141816481C>T	uc002tvj.1	-	9	2351	c.1379G>A	c.(1378-1380)CGA>CAA	p.R460Q	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	460	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTGATAAATTCGGATTCCCCA	0.343										TSP Lung(27;0.18)			15	50					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141819833	141819833	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141819833G>T	uc002tvj.1	-	8	1995	c.1023C>A	c.(1021-1023)TTC>TTA	p.F341L	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	341	Extracellular (Potential).|LDL-receptor class B 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGTCAGTAAAGAAAAGTTTTC	0.428										TSP Lung(27;0.18)			18	41					2.4624e-09	2.64481e-09	1	1	0	
LRP1B	53353	broad.mit.edu	37	2	141946119	141946119	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:141946119C>T	uc002tvj.1	-	7	1856	c.884G>A	c.(883-885)CGA>CAA	p.R295Q	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	295	Extracellular (Potential).|LDL-receptor class B 2.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATAGAGATTTCGAGTGAGCCA	0.408										TSP Lung(27;0.18)			18	41					0	0	1	0	0	
KYNU	8942	broad.mit.edu	37	2	143676232	143676232	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:143676232C>A	uc002tvl.2	+	3	354	c.224C>A	c.(223-225)TCT>TAT	p.S75Y	KYNU_uc002tvk.2_Missense_Mutation_p.S75Y|KYNU_uc010fnm.2_Missense_Mutation_p.S75Y	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	75					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	TTGGGAAATTCTCTTGGCCTT	0.279													15	42					2.23348e-06	2.32221e-06	1	1	0	
ARHGAP15	55843	broad.mit.edu	37	2	143959745	143959745	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:143959745G>T	uc002tvm.3	+	3	359	c.208G>T	c.(208-210)GAT>TAT	p.D70Y	ARHGAP15_uc010zbl.1_Missense_Mutation_p.D70Y	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	70					regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		TATCTTGAAAGATGTCATTCC	0.229													35	93					1.47244e-24	1.76996e-24	1	1	0	
GTDC1	79712	broad.mit.edu	37	2	144899590	144899590	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:144899590A>G	uc002tvp.2	-	6	659	c.380T>C	c.(379-381)GTT>GCT	p.V127A	GTDC1_uc002tvo.2_Missense_Mutation_p.V127A|GTDC1_uc002tvq.2_Missense_Mutation_p.V127A|GTDC1_uc002tvr.2_Missense_Mutation_p.V127A|GTDC1_uc010fnn.2_Missense_Mutation_p.V127A|GTDC1_uc002tvs.2_Missense_Mutation_p.V95A|GTDC1_uc010fno.2_5'UTR|GTDC1_uc002tvt.1_Missense_Mutation_p.V127A	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	127					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		CATATTAAAAACTGAGTTGAA	0.393													19	53					0	0	1	0	0	
ZEB2	9839	broad.mit.edu	37	2	145147102	145147102	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:145147102A>G	uc002tvu.2	-	10	4041	c.3561T>C	c.(3559-3561)GAT>GAC	p.D1187D	ZEB2_uc002tvv.2_Silent_p.D1181D|ZEB2_uc010zbm.1_Silent_p.D1158D|ZEB2_uc010fnp.2_Intron	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	1187	Glu-rich (acidic).					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		CCATGGAGTGATCTCCAGTCT	0.438													87	166					0	0	1	0	0	
MBD5	55777	broad.mit.edu	37	2	149216265	149216265	+	Translation_Start_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:149216265C>A	uc002twm.3	+	6	926	c.-62C>A	c.(-64--60)CTCTG>CTATG		MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Translation_Start_Site	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5							chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CCATCATGCTCTGTAATATAA	0.458													15	18					1.52009e-12	1.68689e-12	1	1	0	
MBD5	55777	broad.mit.edu	37	2	149247655	149247655	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:149247655G>T	uc002twm.3	+	12	4743	c.3755G>T	c.(3754-3756)AGA>ATA	p.R1252I	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Missense_Mutation_p.R1252I|MBD5_uc002two.2_Missense_Mutation_p.R510I|MBD5_uc002twp.2_Missense_Mutation_p.R302I	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1252						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TTACCACCAAGAAACTGTCCA	0.423													32	69					1.36615e-20	1.614e-20	1	1	0	
KIF5C	3800	broad.mit.edu	37	2	149840179	149840179	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:149840179C>T	uc010zbu.1	+	15	1983	c.1615C>T	c.(1615-1617)CTT>TTT	p.L539F	KIF5C_uc002tws.1_RNA|KIF5C_uc002twt.2_Missense_Mutation_p.L91F	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	539					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		GCTACAAGAGCTTAGCAACCA	0.418													14	39					0	0	1	0	0	
LYPD6B	130576	broad.mit.edu	37	2	150061822	150061822	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:150061822G>A	uc002twv.1	+	4	534	c.133G>A	c.(133-135)GCT>ACT	p.A45T	LYPD6B_uc002tww.1_Missense_Mutation_p.A7T|LYPD6B_uc002twx.1_Missense_Mutation_p.A7T	NM_177964	NP_808879	Q8NI32	LPD6B_HUMAN	LY6/PLAUR domain containing 6B	21						anchored to membrane|plasma membrane					0						CCTCTGTCACGCTCTCGCTAT	0.453													60	132					0	0	1	0	0	
RND3	390	broad.mit.edu	37	2	151331453	151331453	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:151331453G>A	uc002txe.2	-	3	528	c.284C>T	c.(283-285)TCG>TTG	p.S95L	RND3_uc002txf.2_Missense_Mutation_p.S95L|RND3_uc002txg.2_Missense_Mutation_p.S95L|RND3_uc010zbv.1_Missense_Mutation_p.S95L|RND3_uc010zbw.1_5'UTR	NM_005168	NP_005159	P61587	RND3_HUMAN	ras homolog gene family, member E precursor	95					actin cytoskeleton organization|cell adhesion|small GTPase mediated signal transduction	Golgi membrane	GTP binding|GTPase activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.106)		CACAGCATCCGAATCAGGGTA	0.463													18	40					0	0	1	0	0	
RIF1	55183	broad.mit.edu	37	2	152293828	152293828	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152293828T>C	uc002txm.2	+	13	1576	c.1446T>C	c.(1444-1446)GTT>GTC	p.V482V	RIF1_uc002txl.2_Silent_p.V482V|RIF1_uc010fnv.1_Silent_p.V446V|RIF1_uc002txn.2_Silent_p.V482V|RIF1_uc002txo.2_Silent_p.V482V|RIF1_uc010zby.1_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	482					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		TCACTGCTGTTCATGATAGCT	0.333													58	106					0	0	1	0	0	
RIF1	55183	broad.mit.edu	37	2	152296636	152296636	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152296636A>C	uc002txm.2	+	15	1772	c.1642A>C	c.(1642-1644)ACG>CCG	p.T548P	RIF1_uc002txl.2_Missense_Mutation_p.T548P|RIF1_uc010fnv.1_Missense_Mutation_p.T512P|RIF1_uc002txn.2_Missense_Mutation_p.T548P|RIF1_uc002txo.2_Missense_Mutation_p.T548P|RIF1_uc010zby.1_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	548					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		TGTATCAAAAACGCTGGTAAG	0.313													19	32					0	0	1	0	0	
RIF1	55183	broad.mit.edu	37	2	152308139	152308139	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152308139G>T	uc002txm.2	+	21	2394	c.2264G>T	c.(2263-2265)AGA>ATA	p.R755I	RIF1_uc002txl.2_Missense_Mutation_p.R755I|RIF1_uc010fnv.1_Missense_Mutation_p.R719I|RIF1_uc002txn.2_Missense_Mutation_p.R755I|RIF1_uc002txo.2_Missense_Mutation_p.R755I	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	755					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		TTCGTGGATAGAATTATTTAT	0.284													25	47					4.22769e-11	4.62085e-11	1	1	0	
RIF1	55183	broad.mit.edu	37	2	152320412	152320412	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152320412G>T	uc002txm.2	+	30	4508	c.4378G>T	c.(4378-4380)GAT>TAT	p.D1460Y	RIF1_uc002txl.2_Missense_Mutation_p.D1460Y|RIF1_uc002txn.2_Missense_Mutation_p.D1460Y|RIF1_uc002txo.2_Missense_Mutation_p.D1460Y|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1460					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		GCATATAAAAGATGATGTGTT	0.353													25	51					4.26978e-12	4.71084e-12	1	1	0	
NEB	4703	broad.mit.edu	37	2	152350367	152350367	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152350367C>A	uc010fnx.2	-	142	19217	c.19026G>T	c.(19024-19026)GAG>GAT	p.E6342D	NEB_uc002txr.2_Intron|RIF1_uc002txp.2_Intron|NEB_uc010zbz.1_Intron|NEB_uc002txq.2_Missense_Mutation_p.E221D|NEB_uc010zca.1_Missense_Mutation_p.E173D|NEB_uc010zcb.1_Intron	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6342	Nebulin 174.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCCCCAGGTTCTCTTTGTATA	0.388													7	5					0.0381472	0.0383344	1	1	0	
NEB	4703	broad.mit.edu	37	2	152352870	152352870	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152352870C>A	uc010fnx.2	-	140	19029	c.18838G>T	c.(18838-18840)GAA>TAA	p.E6280*	NEB_uc002txr.2_Nonsense_Mutation_p.E2672*|RIF1_uc002txp.2_Intron|NEB_uc010zbz.1_Nonsense_Mutation_p.E80*|NEB_uc002txq.2_Nonsense_Mutation_p.E159*|NEB_uc010zca.1_Nonsense_Mutation_p.E111*|NEB_uc010zcb.1_Nonsense_Mutation_p.E80*	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6280	Nebulin 172.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CCCATGTTTTCTTTGTATAAC	0.408													5	13					0.000274275	0.000279565	1	1	0	
NEB	4703	broad.mit.edu	37	2	152381115	152381115	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152381115C>A	uc010fnx.2	-	124	17376	c.17185G>T	c.(17185-17187)GAT>TAT	p.D5729Y	NEB_uc002txr.2_Missense_Mutation_p.D2152Y|NEB_uc002txt.3_Missense_Mutation_p.D234Y	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5729	Nebulin 156.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCTTTGGCATCTTTTCTGTAA	0.373													54	114					2.69953e-25	3.25358e-25	1	1	0	
NEB	4703	broad.mit.edu	37	2	152382699	152382699	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152382699C>T	uc010fnx.2	-	121	17111	c.16920G>A	c.(16918-16920)GCG>GCA	p.A5640A	NEB_uc002txr.2_Silent_p.A2063A|NEB_uc002txt.3_Silent_p.A145A	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5640	Nebulin 154.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGACAGTCTTCGCCAGCAGGA	0.552													17	47					0	0	1	0	0	
NEB	4703	broad.mit.edu	37	2	152411448	152411448	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152411448G>A	uc010fnx.2	-	97	14513	c.14322C>T	c.(14320-14322)ATC>ATT	p.I4774I	NEB_uc002txr.2_Silent_p.I1197I	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4774	Nebulin 130.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TACTTACATCGATGTTAAGCT	0.239													34	55					0	0	1	0	0	
NEB	4703	broad.mit.edu	37	2	152432773	152432773	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152432773G>T	uc010fnx.2	-	78	11888	c.11697C>A	c.(11695-11697)ATC>ATA	p.I3899I	NEB_uc002txr.2_Silent_p.I322I	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3899					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGTCACAAAAGATATTCTGGG	0.478													34	68					4.3181e-19	5.06354e-19	1	1	0	
NEB	4703	broad.mit.edu	37	2	152466440	152466440	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152466440C>A	uc010fnx.2	-	77	11675	c.11484G>T	c.(11482-11484)AAG>AAT	p.K3828N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3828	Nebulin 105.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCTGACATTTCTTGGCCAGCA	0.418													45	69					2.35958e-20	2.78446e-20	1	1	0	
NEB	4703	broad.mit.edu	37	2	152474792	152474792	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152474792A>G	uc010fnx.2	-	70	10535	c.10344T>C	c.(10342-10344)AAT>AAC	p.N3448N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3448	Nebulin 94.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GACTCACCTTATTCATGTTTA	0.358													56	116					0	0	1	0	0	
NEB	4703	broad.mit.edu	37	2	152476236	152476236	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152476236T>C	uc010fnx.2	-	69	10063	c.9872A>G	c.(9871-9873)CAC>CGC	p.H3291R		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3291					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGCGCCAATGTGGTGACCCAA	0.438													29	64					0	0	1	0	0	
NEB	4703	broad.mit.edu	37	2	152507230	152507230	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152507230T>C	uc010fnx.2	-	53	7276	c.7085A>G	c.(7084-7086)GAC>GGC	p.D2362G		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2362	Nebulin 63.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCCCAACATGTCCACTGGGCT	0.458													121	263					0	0	1	0	0	
NEB	4703	broad.mit.edu	37	2	152512918	152512918	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152512918C>T	uc010fnx.2	-	49	6435	c.6244G>A	c.(6244-6246)GAG>AAG	p.E2082K		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2082	Nebulin 55.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGATCATCCTCGAGACTGCGG	0.393													54	95					0	0	1	0	0	
NEB	4703	broad.mit.edu	37	2	152521935	152521935	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152521935C>T	uc010fnx.2	-	42	5341	c.5150G>A	c.(5149-5151)CGC>CAC	p.R1717H		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1717	Nebulin 44.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGGGTGCTGGCGATACTTCTT	0.488													15	25					0	0	1	0	0	
NEB	4703	broad.mit.edu	37	2	152548380	152548380	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152548380C>A	uc010fnx.2	-	23	2400	c.2209G>T	c.(2209-2211)GAT>TAT	p.D737Y	NEB_uc010fny.1_Missense_Mutation_p.D291Y	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	737					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TAACTTACATCTTTACACTGG	0.353													7	5					0.0293803	0.0295462	1	1	0	
NEB	4703	broad.mit.edu	37	2	152563476	152563476	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152563476T>G	uc010fnx.2	-	13	1262	c.1071A>C	c.(1069-1071)GGA>GGC	p.G357G	NEB_uc010fny.1_5'UTR	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	357					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AATCTGCTTTTCCTTTATTCT	0.378													5	9					0	0	1	0	0	
CACNB4	785	broad.mit.edu	37	2	152709980	152709980	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:152709980T>C	uc002tya.2	-	12	1166	c.1098A>G	c.(1096-1098)AAA>AAG	p.K366K	CACNB4_uc002txy.2_Silent_p.K332K|CACNB4_uc002txz.2_Silent_p.K348K|CACNB4_uc010fnz.2_Silent_p.K366K	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	366					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	ATTGTGCAAGTTTATCAGCTG	0.368													5	9					0	0	1	0	0	
FMNL2	114793	broad.mit.edu	37	2	153475668	153475668	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:153475668A>C	uc002tye.2	+	14	1990	c.1623A>C	c.(1621-1623)GAA>GAC	p.E541D	FMNL2_uc010fob.2_5'Flank|FMNL2_uc002tyf.2_5'Flank	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	541	Pro-rich.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						ACACACCTGAAACAGGTAAGA	0.413													11	39					0	0	1	0	0	
FMNL2	114793	broad.mit.edu	37	2	153486227	153486227	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:153486227A>G	uc002tye.2	+	19	2825	c.2458A>G	c.(2458-2460)AAA>GAA	p.K820E	FMNL2_uc010fob.2_Missense_Mutation_p.K276E|FMNL2_uc002tyf.2_Missense_Mutation_p.K269E	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	820	FH2.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						AAAACTCAAGAAAATTCTGGA	0.413													9	9					0	0	1	0	0	
FMNL2	114793	broad.mit.edu	37	2	153488588	153488588	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:153488588G>T	uc002tye.2	+	21	2984	c.2617G>T	c.(2617-2619)GAA>TAA	p.E873*	FMNL2_uc010fob.2_Nonsense_Mutation_p.E329*|FMNL2_uc002tyf.2_Nonsense_Mutation_p.E322*	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	873	FH2.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						TGTGGTGAAAGAAAAATATCA	0.388													34	38					4.34311e-12	4.79046e-12	1	1	0	
PRPF40A	55660	broad.mit.edu	37	2	153519137	153519137	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:153519137C>A	uc002tyh.3	-	21	2324	c.2302G>T	c.(2302-2304)GAT>TAT	p.D768Y	PRPF40A_uc002tyg.3_Missense_Mutation_p.D224Y|PRPF40A_uc010zcd.1_Missense_Mutation_p.D719Y	NM_017892	NP_060362	O75400	PR40A_HUMAN	formin binding protein 3	795	FF 5.				mRNA processing|RNA splicing	nuclear matrix|nuclear speck	protein binding				0						TGCATAAAATCTTTAAATATT	0.269													6	21					2.7689e-08	2.93819e-08	1	1	0	
GALNT13	114805	broad.mit.edu	37	2	155158056	155158056	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:155158056A>C	uc002tyr.3	+	9	1677	c.1110A>C	c.(1108-1110)GAA>GAC	p.E370D	GALNT13_uc002tyt.3_Missense_Mutation_p.E370D|GALNT13_uc010foc.1_Missense_Mutation_p.E189D|GALNT13_uc010fod.2_Missense_Mutation_p.E123D	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	370	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GACTGGCAGAAGTTTGGATGG	0.393													56	121					0	0	1	0	0	
KCNJ3	3760	broad.mit.edu	37	2	155555618	155555618	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:155555618G>A	uc002tyv.1	+	1	526	c.331G>A	c.(331-333)GAC>AAC	p.D111N	KCNJ3_uc010zce.1_Missense_Mutation_p.D111N	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	111	Extracellular (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	CACTCGGGGCGACCTGAACAA	0.557													23	50					0	0	1	0	0	
GPD2	2820	broad.mit.edu	37	2	157427707	157427707	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:157427707G>A	uc002tzf.3	+	13	2030	c.1670G>A	c.(1669-1671)CGC>CAC	p.R557H	GPD2_uc010zch.1_Missense_Mutation_p.R330H|GPD2_uc002tzd.3_Missense_Mutation_p.R557H|GPD2_uc002tze.1_RNA	NM_001083112	NP_001076581	P43304	GPDM_HUMAN	glycerol-3-phosphate dehydrogenase 2,	557					cellular lipid metabolic process	glycerol-3-phosphate dehydrogenase complex|mitochondrial inner membrane	calcium ion binding|sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity			ovary(1)	1						CGTCGTACTCGCCTGGCCTTT	0.433													53	88					0	0	1	0	0	
GALNT5	11227	broad.mit.edu	37	2	158115201	158115201	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:158115201C>T	uc002tzg.2	+	1	862	c.607C>T	c.(607-609)CCC>TCC	p.P203S	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	203	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						GAGTCATAGTCCCAGCAGTGA	0.448													16	50					0	0	1	0	0	
GALNT5	11227	broad.mit.edu	37	2	158142577	158142577	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:158142577C>T	uc002tzg.2	+	3	1927	c.1672C>T	c.(1672-1674)CGG>TGG	p.R558W	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	558	Catalytic subdomain A.|Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						TCCAAAAGTTCGGATTCTTCG	0.378													19	32					0	0	1	0	0	
PKP4	8502	broad.mit.edu	37	2	159481805	159481805	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:159481805G>A	uc002tzv.2	+	7	1279	c.1019G>A	c.(1018-1020)CGC>CAC	p.R340H	PKP4_uc002tzt.1_Missense_Mutation_p.R192H|PKP4_uc002tzu.2_Missense_Mutation_p.R340H|PKP4_uc002tzw.2_Missense_Mutation_p.R340H|PKP4_uc002tzx.2_5'UTR|PKP4_uc002tzy.1_5'UTR|PKP4_uc002tzz.1_Missense_Mutation_p.R338H|PKP4_uc002uaa.2_Missense_Mutation_p.R192H	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	340					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						TCCCCCAAACGCTCAGGGATG	0.577										HNSCC(62;0.18)			30	62					0	0	1	0	0	
TANC1	85461	broad.mit.edu	37	2	160019918	160019918	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:160019918C>T	uc002uag.2	+	8	1081	c.807C>T	c.(805-807)TGC>TGT	p.C269C	TANC1_uc010fol.1_Silent_p.C163C|TANC1_uc010zcm.1_Silent_p.C268C|TANC1_uc010fom.1_Intron	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	269						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						CAGATAACTGCTCCCCAGTGG	0.537													27	70					0	0	1	0	0	
BAZ2B	29994	broad.mit.edu	37	2	160193585	160193585	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:160193585A>C	uc002uao.2	-	33	6016	c.5664T>G	c.(5662-5664)ATT>ATG	p.I1888M	BAZ2B_uc002uap.2_Missense_Mutation_p.I1852M	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1888					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TATCCTCTTCAATTCTGCATT	0.413													43	99					0	0	1	0	0	
BAZ2B	29994	broad.mit.edu	37	2	160303396	160303396	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:160303396C>T	uc002uao.2	-	6	945	c.593G>A	c.(592-594)GGA>GAA	p.G198E	BAZ2B_uc002uap.2_Missense_Mutation_p.G196E|BAZ2B_uc002uas.1_Missense_Mutation_p.G135E|BAZ2B_uc002uau.1_Missense_Mutation_p.G196E|BAZ2B_uc002uaq.1_Missense_Mutation_p.G126E|BAZ2B_uc002uat.3_Missense_Mutation_p.G135E|BAZ2B_uc010fop.1_Missense_Mutation_p.G196E	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	198	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TTTAGTTTGTCCCATGGAACT	0.363													38	91					0	0	1	0	0	
BAZ2B	29994	broad.mit.edu	37	2	160304759	160304759	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:160304759C>T	uc002uao.2	-	5	848	c.496G>A	c.(496-498)GAA>AAA	p.E166K	BAZ2B_uc002uap.2_Missense_Mutation_p.E164K|BAZ2B_uc002uas.1_Missense_Mutation_p.E103K|BAZ2B_uc002uau.1_Missense_Mutation_p.E164K|BAZ2B_uc002uaq.1_Missense_Mutation_p.E94K|BAZ2B_uc002uat.3_Missense_Mutation_p.E103K|BAZ2B_uc010fop.1_Missense_Mutation_p.E164K	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	166	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						ATACCTTTTTCGGGACCATTT	0.333													29	64					0	0	1	0	0	
LY75	4065	broad.mit.edu	37	2	160731976	160731976	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:160731976G>A	uc002ubc.3	-	12	2022	c.1953C>T	c.(1951-1953)CCC>CCT	p.P651P	LY75_uc002ubb.3_Silent_p.P651P|LY75_uc010fos.2_Silent_p.P651P|LY75_uc010fot.1_Silent_p.P651P	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	651	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		AAAGACTTGCGGGGAAACTCT	0.433													32	82					0	0	1	0	0	
ITGB6	3694	broad.mit.edu	37	2	160994243	160994243	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:160994243G>A	uc002ubh.2	-	10	1378	c.1362C>T	c.(1360-1362)TGC>TGT	p.C454C	ITGB6_uc010fou.2_Silent_p.C454C|ITGB6_uc010zcq.1_Silent_p.C412C|ITGB6_uc010fov.1_Silent_p.C454C	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	454	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						TCTGACAGTCGCAGTTGCATT	0.547													27	46					0	0	1	0	0	
ITGB6	3694	broad.mit.edu	37	2	161052788	161052788	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:161052788C>A	uc002ubh.2	-	3	301	c.285G>T	c.(283-285)CAG>CAT	p.Q95H	ITGB6_uc010fow.1_RNA|ITGB6_uc010fou.2_Missense_Mutation_p.Q95H|ITGB6_uc010zcq.1_Missense_Mutation_p.Q53H|ITGB6_uc010fov.1_Missense_Mutation_p.Q95H	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	95	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						AACTATTTTTCTGTCTGCCTA	0.378													73	129					6.88731e-43	8.54603e-43	1	1	0	
SLC4A10	57282	broad.mit.edu	37	2	162762303	162762303	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:162762303A>G	uc002ubx.3	+	15	2087	c.1903A>G	c.(1903-1905)ATT>GTT	p.I635V	SLC4A10_uc002uby.3_Missense_Mutation_p.I605V|SLC4A10_uc010zcs.1_Missense_Mutation_p.I616V	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	635	Helical; (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						GATTTGCATCATTTTCATTTA	0.413													27	48					0	0	1	0	0	
SLC4A10	57282	broad.mit.edu	37	2	162804171	162804171	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:162804171C>A	uc002ubx.3	+	17	2383	c.2199C>A	c.(2197-2199)TTC>TTA	p.F733L	SLC4A10_uc002uby.3_Missense_Mutation_p.F703L|SLC4A10_uc010zcs.1_Missense_Mutation_p.F714L	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	733	Helical; (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TGATCCTGTTCTTTTCCACAG	0.423													45	74					6.68952e-21	7.91001e-21	1	1	0	
SLC4A10	57282	broad.mit.edu	37	2	162805661	162805661	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:162805661C>T	uc002ubx.3	+	18	2453	c.2269C>T	c.(2269-2271)CGA>TGA	p.R757*	SLC4A10_uc002uby.3_Nonsense_Mutation_p.R727*|SLC4A10_uc010zcs.1_Nonsense_Mutation_p.R738*	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	757	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TTTTTAGGTTCGATCCATAGT	0.338													30	72					0	0	1	0	0	
GCG	2641	broad.mit.edu	37	2	163003923	163003923	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:163003923T>C	uc002ucc.2	-	3	293	c.194A>G	c.(193-195)TAT>TGT	p.Y65C		NM_002054	NP_002045	P01275	GLUC_HUMAN	glucagon preproprotein	65					cell proliferation|cellular response to glucagon stimulus|energy reserve metabolic process|feeding behavior|regulation of insulin secretion	plasma membrane|soluble fraction	hormone activity				0					Exenatide(DB01276)|Phentolamine(DB00692)	GGAGTCCAGATACTTGCTGTA	0.483													93	168					0	0	1	0	0	
FAP	2191	broad.mit.edu	37	2	163070503	163070503	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:163070503G>A	uc002ucd.2	-	11	1155	c.947C>T	c.(946-948)TCG>TTG	p.S316L	FAP_uc010zct.1_Missense_Mutation_p.S291L|FAP_uc010fpd.2_Intron|FAP_uc010fpe.1_Missense_Mutation_p.S283L	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	316	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						AGACAGGACCGAAACATTCTG	0.398													30	187					0	0	1	0	0	
IFIH1	64135	broad.mit.edu	37	2	163134117	163134117	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:163134117G>A	uc002uce.2	-	10	2074	c.1852C>T	c.(1852-1854)CGA>TGA	p.R618*		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	618					detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						TCTATCATTCGAATTGTGTCA	0.299													31	36					0	0	1	0	0	
IFIH1	64135	broad.mit.edu	37	2	163174673	163174673	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:163174673T>C	uc002uce.2	-	1	367	c.145A>G	c.(145-147)ACA>GCA	p.T49A	IFIH1_uc002ucf.2_Missense_Mutation_p.T49A	NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	49	CARD 1.				detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						GTGGCGACTGTCCTCTGAATC	0.577													39	38					0	0	1	0	0	
KCNH7	90134	broad.mit.edu	37	2	163241450	163241450	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:163241450C>T	uc002uch.1	-	13	2923	c.2711_splice	c.e13-1	p.E904_splice		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,						regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	GTACTGTTTTCTTTGCCAAAA	0.318													25	68					0	0	1	0	0	
GRB14	2888	broad.mit.edu	37	2	165378577	165378577	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:165378577C>T	uc002ucl.2	-	6	1270	c.729G>A	c.(727-729)GCG>GCA	p.A243A	GRB14_uc010zcv.1_Silent_p.A156A|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	243	PH.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						CCTGTTCTTTCGCATGTAAGA	0.279													30	75					0	0	1	0	0	
GRB14	2888	broad.mit.edu	37	2	165477817	165477817	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:165477817C>A	uc002ucl.2	-	1	544	c.3G>T	c.(1-3)ATG>ATT	p.M1I	GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	1					blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						GGGAAGTGGTCATTGTCGCCG	0.751													6	14					0.248553	0.248856	1	1	0	
COBLL1	22837	broad.mit.edu	37	2	165552047	165552047	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:165552047C>A	uc010zcw.1	-	15	2294	c.2170G>T	c.(2170-2172)GAT>TAT	p.D724Y	COBLL1_uc002ucp.2_Missense_Mutation_p.D657Y|COBLL1_uc002ucq.2_Missense_Mutation_p.D619Y|COBLL1_uc010zcx.1_Missense_Mutation_p.D665Y|COBLL1_uc002ucn.2_Missense_Mutation_p.D85Y|COBLL1_uc002uco.2_Missense_Mutation_p.D388Y	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	695										ovary(2)|pancreas(1)	3						AAATTATGATCTTGGTGTTTC	0.358													32	218					2.85442e-18	3.33381e-18	1	1	0	
COBLL1	22837	broad.mit.edu	37	2	165552116	165552116	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:165552116C>T	uc010zcw.1	-	15	2225	c.2101G>A	c.(2101-2103)GCA>ACA	p.A701T	COBLL1_uc002ucp.2_Missense_Mutation_p.A634T|COBLL1_uc002ucq.2_Missense_Mutation_p.A596T|COBLL1_uc010zcx.1_Missense_Mutation_p.A642T|COBLL1_uc002ucn.2_Missense_Mutation_p.A62T|COBLL1_uc002uco.2_Missense_Mutation_p.A365T	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	672										ovary(2)|pancreas(1)	3						GTCTTTTCTGCACTGGGTTGA	0.383													104	244					0	0	1	0	0	
COBLL1	22837	broad.mit.edu	37	2	165584506	165584506	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:165584506C>A	uc010zcw.1	-	6	917	c.793G>T	c.(793-795)GAA>TAA	p.E265*	COBLL1_uc002ucp.2_Nonsense_Mutation_p.E212*|COBLL1_uc002ucq.2_Nonsense_Mutation_p.E212*|COBLL1_uc010zcx.1_Nonsense_Mutation_p.E258*|COBLL1_uc002ucs.1_RNA|COBLL1_uc002uco.2_5'Flank	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	250										ovary(2)|pancreas(1)	3						GCATATAATTCTCTTAGTCCC	0.343													33	62					1.30293e-26	1.57754e-26	1	1	0	
SLC38A11	151258	broad.mit.edu	37	2	165772419	165772419	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:165772419A>G	uc002ucv.1	-	9	1051	c.514T>C	c.(514-516)TCT>CCT	p.S172P	SLC38A11_uc002ucu.1_Missense_Mutation_p.S150P|SLC38A11_uc002ucw.1_Missense_Mutation_p.S172P	NM_173512	NP_775783	Q08AI6	S38AB_HUMAN	solute carrier family 38, member 11	172	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						TCACCAAAAGACATAACCCCG	0.388													107	227					0	0	1	0	0	
SCN3A	6328	broad.mit.edu	37	2	165947775	165947775	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:165947775G>A	uc002ucx.2	-	28	5380	c.4888C>T	c.(4888-4890)CGA>TGA	p.R1630*	SCN3A_uc010zcy.1_Nonsense_Mutation_p.R113*|SCN3A_uc002ucy.2_Nonsense_Mutation_p.R1581*|SCN3A_uc002ucz.2_Nonsense_Mutation_p.R1581*	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1630	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CGTAGGATTCGGCCAATCCTG	0.478													50	102					0	0	1	0	0	
SCN3A	6328	broad.mit.edu	37	2	165996041	165996041	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:165996041G>T	uc002ucx.2	-	14	2589	c.2097C>A	c.(2095-2097)TCC>TCA	p.S699S	SCN3A_uc002ucy.2_Silent_p.S650S|SCN3A_uc002ucz.2_Silent_p.S650S|SCN3A_uc002uda.1_Silent_p.S519S|SCN3A_uc002udb.1_Silent_p.S519S	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	699						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GCCTTCCAGAGGAATCCTCCA	0.473													30	74					3.57733e-08	3.78477e-08	1	1	0	
SCN3A	6328	broad.mit.edu	37	2	166021012	166021012	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166021012G>T	uc002ucx.2	-	6	984	c.492C>A	c.(490-492)ATC>ATA	p.I164I	SCN3A_uc002ucy.2_Silent_p.I164I|SCN3A_uc002ucz.2_Silent_p.I164I|SCN3A_uc002uda.1_Silent_p.I33I|SCN3A_uc002udb.1_Silent_p.I33I	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	164	Helical; Name=S2 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CAAAGGTATAGATTCCAGTGA	0.348													14	42					4.7546e-09	5.08881e-09	1	1	0	
SCN2A	6326	broad.mit.edu	37	2	166152574	166152574	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166152574C>A	uc002udc.2	+	2	531	c.241C>A	c.(241-243)CTG>ATG	p.L81M	SCN2A_uc002udd.2_Missense_Mutation_p.L81M|SCN2A_uc002ude.2_Missense_Mutation_p.L81M	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	81					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CCTGGAGGATCTGGACCCCTA	0.448													16	57					2.35188e-11	2.57851e-11	1	1	0	
SCN2A	6326	broad.mit.edu	37	2	166198827	166198827	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166198827G>A	uc002udc.2	+	15	2700	c.2410G>A	c.(2410-2412)GCA>ACA	p.A804T	SCN2A_uc002udd.2_Missense_Mutation_p.A804T|SCN2A_uc002ude.2_Missense_Mutation_p.A804T	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	804	II.|Helical; Name=S2 of repeat II; (Potential).				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GATCTTCACAGCAGAAATGTT	0.333													36	48					0	0	1	0	0	
SCN2A	6326	broad.mit.edu	37	2	166223836	166223836	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166223836C>T	uc002udc.2	+	19	3920	c.3630C>T	c.(3628-3630)TTC>TTT	p.F1210F	SCN2A_uc002udd.2_Silent_p.F1210F|SCN2A_uc002ude.2_Silent_p.F1210F	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1210	III.|Helical; Name=S1 of repeat III; (Potential).				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ACAATTGGTTCGAAACCTTCA	0.433													20	50					0	0	1	0	0	
SCN2A	6326	broad.mit.edu	37	2	166245742	166245742	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166245742C>T	uc002udc.2	+	27	5716	c.5426C>T	c.(5425-5427)GCG>GTG	p.A1809V	SCN2A_uc002udd.2_Missense_Mutation_p.A1809V|SCN2A_uc002ude.2_Missense_Mutation_p.A1809V	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1809	IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GATCCCGATGCGACCCAGTTT	0.458													57	115					0	0	1	0	0	
CSRNP3	80034	broad.mit.edu	37	2	166535407	166535407	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166535407C>T	uc002udf.2	+	7	1278	c.902C>T	c.(901-903)TCT>TTT	p.S301F	CSRNP3_uc002udg.2_Missense_Mutation_p.S301F	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	301					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						CACAGTAGTTCTATGGGCCCT	0.488													8	79					0	0	1	0	0	
CSRNP3	80034	broad.mit.edu	37	2	166535733	166535733	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166535733C>T	uc002udf.2	+	7	1604	c.1228C>T	c.(1228-1230)CTT>TTT	p.L410F	CSRNP3_uc002udg.2_Missense_Mutation_p.L410F	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	410					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						TCCTTCAGTTCTTTGTTATTC	0.398													42	89					0	0	1	0	0	
TTC21B	79809	broad.mit.edu	37	2	166767940	166767940	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166767940T>C	uc002udk.2	-	18	2491	c.2358A>G	c.(2356-2358)GGA>GGG	p.G786G		NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	786	TPR 10.					cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						AATTCTTTTGTCCAGTTTTCA	0.373													28	66					0	0	1	0	0	
SCN1A	6323	broad.mit.edu	37	2	166852557	166852557	+	Missense_Mutation	SNP	G	A	A	rs139300715		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166852557G>A	uc010zcz.1	-	24	4532	c.4514C>T	c.(4513-4515)TCG>TTG	p.S1505L		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1516						voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.S1505L(1)		ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CGGTTTTTTCGATCCTAATTT	0.328													16	67					0	0	1	0	0	
SCN1A	6323	broad.mit.edu	37	2	166870258	166870258	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166870258G>T	uc010zcz.1	-	18	3686	c.3668C>A	c.(3667-3669)GCT>GAT	p.A1223D	SCN1A_uc002udo.3_Missense_Mutation_p.A1103D|SCN1A_uc010fpk.2_Missense_Mutation_p.A1075D	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1234	III.|Helical; Name=S1 of repeat III; (By similarity).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	ACTCACCAGAGCACCACTACT	0.368													17	66					1.15088e-07	1.20949e-07	1	1	0	
SCN1A	6323	broad.mit.edu	37	2	166900452	166900452	+	Silent	SNP	G	A	A	rs146520391		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:166900452G>A	uc010zcz.1	-	11	1788	c.1770C>T	c.(1768-1770)TTC>TTT	p.F590F	SCN1A_uc002udo.3_Silent_p.F459F|SCN1A_uc010fpk.2_Silent_p.F459F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	590						voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.F590F(1)		ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CATCATCTGCGAAGTCGTTCT	0.517													32	89					0	0	1	0	0	
SCN9A	6335	broad.mit.edu	37	2	167060699	167060699	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:167060699T>A	uc010fpl.2	-	26	4848	c.4507A>T	c.(4507-4509)AAT>TAT	p.N1503Y	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1514	IV.|Helical; Name=S1 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AAGGCTTGATTTGTCACTAGG	0.323													22	53					0	0	1	0	0	
SCN9A	6335	broad.mit.edu	37	2	167141144	167141144	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:167141144C>T	uc010fpl.2	-	12	2134	c.1793G>A	c.(1792-1794)CGC>CAC	p.R598H	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.R469H|SCN9A_uc002uds.1_Missense_Mutation_p.R469H|SCN9A_uc002udt.1_Missense_Mutation_p.R469H	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	598						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GTTACTGCTGCGTCGCTCCTG	0.552													25	56					0	0	1	0	0	
SCN9A	6335	broad.mit.edu	37	2	167141266	167141266	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:167141266G>T	uc010fpl.2	-	12	2012	c.1671C>A	c.(1669-1671)TTC>TTA	p.F557L	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.F428L|SCN9A_uc002uds.1_Missense_Mutation_p.F428L|SCN9A_uc002udt.1_Missense_Mutation_p.F428L	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	557						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CTCTGCCTTTGAAACTAAAAA	0.443													16	36					3.45872e-05	3.55908e-05	1	1	0	
SCN9A	6335	broad.mit.edu	37	2	167162341	167162341	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:167162341T>C	uc010fpl.2	-	5	898	c.557A>G	c.(556-558)GAC>GGC	p.D186G	SCN9A_uc002udr.1_Missense_Mutation_p.D57G|SCN9A_uc002uds.1_Missense_Mutation_p.D57G|SCN9A_uc002udt.1_Missense_Mutation_p.D57G	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	186	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GTTCCACGGGTCACGAAGAAA	0.383													33	65					0	0	1	0	0	
SCN9A	6335	broad.mit.edu	37	2	167163559	167163559	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:167163559T>G	uc010fpl.2	-	3	625	c.284A>C	c.(283-285)AAA>ACA	p.K95T	SCN9A_uc002udr.1_5'Flank|SCN9A_uc002uds.1_5'Flank|SCN9A_uc002udt.1_5'Flank	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	95						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GAAGATTGTTTTCCCTTTGTT	0.333													17	24					0	0	1	0	0	
SCN7A	6332	broad.mit.edu	37	2	167262951	167262951	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:167262951T>C	uc002udu.1	-	25	4315	c.4188A>G	c.(4186-4188)GTA>GTG	p.V1396V		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1396	Helical; Name=S5 of repeat IV; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACATTCCAAATACGGCATAGA	0.363													42	94					0	0	1	0	0	
SCN7A	6332	broad.mit.edu	37	2	167304120	167304120	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:167304120A>G	uc002udu.1	-	11	1514	c.1387_splice	c.e11+1	p.E463_splice	SCN7A_uc010fpm.1_Splice_Site	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha						muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TTAGTACTTTACCTTCCTTAT	0.338													16	44					0	0	1	0	0	
XIRP2	129446	broad.mit.edu	37	2	168098327	168098327	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:168098327G>A	uc002udx.2	+	7	1101	c.1083G>A	c.(1081-1083)TCG>TCA	p.S361S	XIRP2_uc010fpn.2_Silent_p.S394S|XIRP2_uc010fpo.2_Silent_p.S361S|XIRP2_uc010fpp.2_Silent_p.S361S|XIRP2_uc002udy.2_Silent_p.S186S|XIRP2_uc010fpq.2_Silent_p.S139S|XIRP2_uc010fpr.2_Silent_p.S139S	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	186					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAAAGGTTTCGACTAAGTTGT	0.363													31	74					0	0	1	0	0	
XIRP2	129446	broad.mit.edu	37	2	168100110	168100110	+	Silent	SNP	C	T	T	rs76149079	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:168100110C>T	uc002udx.2	+	8	2226	c.2208C>T	c.(2206-2208)TTC>TTT	p.F736F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.F561F|XIRP2_uc010fpq.2_Silent_p.F514F|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	561	Xin 6.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAAAATGTTTCGAAACTCAAC	0.368													32	58					0	0	1	0	0	
XIRP2	129446	broad.mit.edu	37	2	168100781	168100781	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:168100781T>G	uc002udx.2	+	8	2897	c.2879T>G	c.(2878-2880)TTT>TGT	p.F960C	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.F785C|XIRP2_uc010fpq.2_Missense_Mutation_p.F738C|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	785					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TTAATTAAATTTGATGCATCA	0.348													26	53					0	0	1	0	0	
XIRP2	129446	broad.mit.edu	37	2	168101110	168101110	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:168101110T>G	uc002udx.2	+	8	3226	c.3208T>G	c.(3208-3210)TTT>GTT	p.F1070V	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.F895V|XIRP2_uc010fpq.2_Missense_Mutation_p.F848V|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	895					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AATTAAATATTTTAGTGATGT	0.338													10	26					0	0	1	0	0	
XIRP2	129446	broad.mit.edu	37	2	168101932	168101932	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:168101932C>A	uc002udx.2	+	8	4048	c.4030C>A	c.(4030-4032)CAT>AAT	p.H1344N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.H1169N|XIRP2_uc010fpq.2_Missense_Mutation_p.H1122N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1169					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGAGGTAATTCATGGAGATGT	0.383													34	57					6.50621e-10	7.02873e-10	1	1	0	
XIRP2	129446	broad.mit.edu	37	2	168103654	168103654	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:168103654C>T	uc002udx.2	+	8	5770	c.5752C>T	c.(5752-5754)CTC>TTC	p.L1918F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.L1743F|XIRP2_uc010fpq.2_Missense_Mutation_p.L1696F|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1743	Potential.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAAGGAGCTTCTCAAAGATGA	0.353													21	45					0	0	1	0	0	
XIRP2	129446	broad.mit.edu	37	2	168103786	168103786	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:168103786A>G	uc002udx.2	+	8	5902	c.5884A>G	c.(5884-5886)ACA>GCA	p.T1962A	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.T1787A|XIRP2_uc010fpq.2_Missense_Mutation_p.T1740A|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1787					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGAGCAGAAAACAGATATTCA	0.443													32	43					0	0	1	0	0	
XIRP2	129446	broad.mit.edu	37	2	168105219	168105219	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:168105219T>G	uc002udx.2	+	8	7335	c.7317T>G	c.(7315-7317)GAT>GAG	p.D2439E	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D2264E|XIRP2_uc010fpq.2_Missense_Mutation_p.D2217E|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2264					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ATAAGAACGATTTTTCCCCCA	0.408													35	97					0	0	1	0	0	
XIRP2	129446	broad.mit.edu	37	2	168105268	168105268	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:168105268A>G	uc002udx.2	+	8	7384	c.7366A>G	c.(7366-7368)AAA>GAA	p.K2456E	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.K2281E|XIRP2_uc010fpq.2_Missense_Mutation_p.K2234E|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2281					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TATGGAATGTAAAATTACTAC	0.393													38	87					0	0	1	0	0	
SPC25	57405	broad.mit.edu	37	2	169732594	169732594	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:169732594G>A	uc002uel.2	-	5	570	c.439C>T	c.(439-441)CGA>TGA	p.R147*		NM_020675	NP_065726	Q9HBM1	SPC25_HUMAN	spindle pole body component 25	147	Interaction with the C-terminus of SPBC24.				cell division|chromosome segregation|mitotic prometaphase|mitotic spindle organization	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			central_nervous_system(1)	1						TAAATTTTTCGAATTTCTAGT	0.284													6	19					0	0	1	0	0	
ABCB11	8647	broad.mit.edu	37	2	169814479	169814479	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:169814479G>T	uc002ueo.1	-	19	2464	c.2338C>A	c.(2338-2340)CTT>ATT	p.L780I	ABCB11_uc010zda.1_Missense_Mutation_p.L222I|ABCB11_uc010zdb.1_Missense_Mutation_p.L256I	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	780	Extracellular (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTTACCCCAAGAATCTGGCTG	0.423													11	24					6.40141e-05	6.56571e-05	1	1	0	
ABCB11	8647	broad.mit.edu	37	2	169869801	169869801	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:169869801T>C	uc002ueo.1	-	5	496	c.370A>G	c.(370-372)ACA>GCA	p.T124A		NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	124	ABC transmembrane type-1 1.|Extracellular (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GTTCCATTTGTCATGTTCTGG	0.343													84	149					0	0	1	0	0	
LRP2	4036	broad.mit.edu	37	2	170011043	170011043	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:170011043G>T	uc002ues.2	-	66	12435	c.12222C>A	c.(12220-12222)TTC>TTA	p.F4074L		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4074	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GATACTCTGAGAACCTCTCAG	0.398													33	62					1.99505e-19	2.34416e-19	1	1	0	
LRP2	4036	broad.mit.edu	37	2	170031797	170031797	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:170031797G>T	uc002ues.2	-	55	10887	c.10674C>A	c.(10672-10674)TTC>TTA	p.F3558L		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3558	LDL-receptor class A 27.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CACTGCACTGGAACTGTCCCA	0.532													35	46					6.05902e-23	7.24288e-23	1	1	0	
LRP2	4036	broad.mit.edu	37	2	170129474	170129474	+	Silent	SNP	G	A	A	rs145709922	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:170129474G>A	uc002ues.2	-	15	2292	c.2079C>T	c.(2077-2079)TTC>TTT	p.F693F	LRP2_uc010zdf.1_Silent_p.F624F	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	693	EGF-like 3.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GTTGGAAGCCGAATGTGCACT	0.488													88	195					0	0	1	0	0	
KLHL23	151230	broad.mit.edu	37	2	170591738	170591738	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:170591738G>T	uc002ufh.1	+	4	552	c.214G>T	c.(214-216)GAA>TAA	p.E72*	KLHL23_uc002ufi.1_Nonsense_Mutation_p.E72*	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	72	BTB.										0						TGACATGAAAGaaaaatttaa	0.353													29	66					2.12542e-12	2.35257e-12	1	1	0	
KLHL23	151230	broad.mit.edu	37	2	170591939	170591939	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:170591939T>C	uc002ufh.1	+	4	753	c.415T>C	c.(415-417)TGT>CGT	p.C139R	KLHL23_uc002ufi.1_Missense_Mutation_p.C139R	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	139	BACK.										0						TATTGATAATTGTATTGGAAT	0.408													47	111					0	0	1	0	0	
METTL5	29081	broad.mit.edu	37	2	170681160	170681160	+	Translation_Start_Site	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:170681160A>C	uc002ufn.2	-	1	194	c.-52T>G	c.(-54--50)ATTTC>ATGTC		UBR3_uc010zdi.1_5'Flank|METTL5_uc002ufo.2_Intron|METTL5_uc002ufp.2_Intron|METTL5_uc002ufq.1_Intron	NM_014168	NP_054887	Q9NRN9	METL5_HUMAN	methyltransferase like 5								methyltransferase activity|nucleic acid binding			central_nervous_system(1)	1						TCTGCGGAGAAATCTATTGAA	0.512											OREG0015052	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	47					0	0	1	0	0	
MYO3B	140469	broad.mit.edu	37	2	171399458	171399458	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:171399458C>T	uc002ufy.2	+	31	3761	c.3618C>T	c.(3616-3618)TTC>TTT	p.F1206F	MYO3B_uc010fqb.1_Missense_Mutation_p.S1234L|MYO3B_uc002ufz.2_Silent_p.F1179F|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	1206					response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GCGATATCTTCGCAGGACATG	0.363													46	88					0	0	1	0	0	
SP5	389058	broad.mit.edu	37	2	171573683	171573683	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:171573683C>T	uc002uge.2	+	2	1132	c.966C>T	c.(964-966)GGC>GGT	p.G322G		NM_001003845	NP_001003845	Q6BEB4	SP5_HUMAN	Sp5 transcription factor	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGCACACGGGCGAGCGACCCT	0.672													3	13					0	0	1	0	0	
SP5	389058	broad.mit.edu	37	2	171573901	171573901	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:171573901C>T	uc002uge.2	+	2	1350	c.1184C>T	c.(1183-1185)GCG>GTG	p.A395V		NM_001003845	NP_001003845	Q6BEB4	SP5_HUMAN	Sp5 transcription factor	395					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGGGAGGACGCGCGGGACCTG	0.652													9	21					0	0	1	0	0	
GAD1	2571	broad.mit.edu	37	2	171686016	171686016	+	Missense_Mutation	SNP	G	T	T	rs138838552		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:171686016G>T	uc002ugi.2	+	4	599	c.177G>T	c.(175-177)GAG>GAT	p.E59D	GAD1_uc002ugh.2_Missense_Mutation_p.E59D	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	59					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GCCTGGAAGAGAAGAGTCGCC	0.567													32	78					1.08312e-15	1.23716e-15	1	1	0	
GAD1	2571	broad.mit.edu	37	2	171716257	171716257	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:171716257T>C	uc002ugi.2	+	17	2072	c.1650T>C	c.(1648-1650)GGT>GGC	p.G550G	GAD1_uc010fqc.2_Silent_p.G169G	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	550					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TGGAGTCAGGTACGACCATGG	0.478													13	25					0	0	1	0	0	
GORASP2	26003	broad.mit.edu	37	2	171811194	171811194	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:171811194C>T	uc002ugk.2	+	6	741	c.601C>T	c.(601-603)CGA>TGA	p.R201*	GORASP2_uc002ugj.2_Nonsense_Mutation_p.R133*|GORASP2_uc010zdl.1_Nonsense_Mutation_p.R213*|GORASP2_uc010zdm.1_Nonsense_Mutation_p.R157*|GORASP2_uc002ugl.2_Nonsense_Mutation_p.R133*|GORASP2_uc002ugm.2_5'UTR	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	201						Golgi membrane				breast(1)|central_nervous_system(1)	2						TTATTTGCATCGAATACCTAC	0.368													21	42					0	0	1	0	0	
TLK1	9874	broad.mit.edu	37	2	171863007	171863007	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:171863007A>C	uc002ugn.2	-	17	2217	c.1745T>G	c.(1744-1746)ATT>AGT	p.I582S	TLK1_uc002ugo.2_Missense_Mutation_p.I603S|TLK1_uc002ugp.2_Missense_Mutation_p.I534S|TLK1_uc002ugq.2_RNA|TLK1_uc010zdn.1_Missense_Mutation_p.I486S	NM_012290	NP_036422	Q9UKI8	TLK1_HUMAN	tousled-like kinase 1 isoform 1	582	Protein kinase.				cell cycle|chromatin modification|intracellular protein transport|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(1)	1						ATAATGTATAATAGGGGGTTT	0.294													51	89					0	0	1	0	0	
PDK1	5163	broad.mit.edu	37	2	173423516	173423516	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:173423516G>T	uc002uhr.2	+	2	377	c.277G>T	c.(277-279)GAA>TAA	p.E93*	PDK1_uc010zdz.1_5'UTR|PDK1_uc010zea.1_RNA|PDK1_uc002uhq.1_Nonsense_Mutation_p.E93*|PDK1_uc002uhs.2_Nonsense_Mutation_p.E93*|PDK1_uc010zeb.1_Nonsense_Mutation_p.E93*	NM_002610	NP_002601	Q15118	PDK1_HUMAN	pyruvate dehydrogenase kinase 1 precursor	93					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate|small GTPase mediated signal transduction	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(3)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.12)			TATAATGAAAGAAATAAGTCT	0.403									Autosomal_Dominant_Polycystic_Kidney_Disease				40	58					4.32679e-17	4.9986e-17	1	1	0	
ZAK	51776	broad.mit.edu	37	2	174034590	174034590	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:174034590C>A	uc002uhz.2	+	3	417	c.217C>A	c.(217-219)CTT>ATT	p.L73I	ZAK_uc002uhx.2_Missense_Mutation_p.L73I|ZAK_uc002uhy.2_Missense_Mutation_p.L73I|ZAK_uc010zei.1_5'UTR|ZAK_uc002uia.1_Missense_Mutation_p.L73I	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	73	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			TGGAGTAATTCTTGAACCTCC	0.338													43	79					5.37117e-13	5.98648e-13	1	1	0	
CDCA7	83879	broad.mit.edu	37	2	174228618	174228618	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:174228618G>A	uc002uid.1	+	4	588	c.457G>A	c.(457-459)GAC>AAC	p.D153N	CDCA7_uc002uic.1_Missense_Mutation_p.D232N|CDCA7_uc010zej.1_Missense_Mutation_p.D188N|CDCA7_uc010zek.1_Missense_Mutation_p.D111N	NM_145810	NP_665809	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7 isoform 2	153					regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.116)			CCCAGGCTCCGACTCAGTAAG	0.398													83	112					0	0	1	0	0	
CIR1	9541	broad.mit.edu	37	2	175243671	175243671	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:175243671G>A	uc002uim.2	-	7	557	c.464C>T	c.(463-465)TCG>TTG	p.S155L	CIR1_uc002uin.2_Missense_Mutation_p.R20W|CIR1_uc002uio.2_5'UTR|CIR1_uc002uip.2_Missense_Mutation_p.S44L	NM_004882	NP_004873	Q86X95	CIR1_HUMAN	CBF1 interacting corepressor	155					mRNA processing|negative regulation of transcription, DNA-dependent|RNA splicing	nuclear speck	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			large_intestine(1)	1						AGTGGGAACCGAACTTGCATT	0.418													49	94					0	0	1	0	0	
GPR155	151556	broad.mit.edu	37	2	175333750	175333750	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:175333750T>C	uc002uit.2	-	6	1463	c.1072A>G	c.(1072-1074)ATG>GTG	p.M358V	GPR155_uc002uiu.2_Missense_Mutation_p.M358V|GPR155_uc002uiv.2_Missense_Mutation_p.M358V|GPR155_uc010fqs.2_Missense_Mutation_p.M358V	NM_001033045	NP_001028217	Q7Z3F1	GP155_HUMAN	G protein-coupled receptor 155 isoform 9	358	Helical; (Potential).				intracellular signal transduction|transmembrane transport	integral to membrane				ovary(1)	1						GAAACGTACATGATGGGAGCA	0.393													40	86					0	0	1	0	0	
WIPF1	7456	broad.mit.edu	37	2	175431871	175431871	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:175431871A>C	uc002uiy.2	-	8	1715	c.1383T>G	c.(1381-1383)GAT>GAG	p.D461E	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Missense_Mutation_p.D461E|WIPF1_uc010fqt.1_Missense_Mutation_p.D461E|WIPF1_uc002uiz.2_Missense_Mutation_p.D461E|WIPF1_uc002ujb.1_Missense_Mutation_p.D461E	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	461					actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						GAGGTGGCAAATCGGAAATCG	0.438													26	55					0	0	1	0	0	
CHRNA1	1134	broad.mit.edu	37	2	175618334	175618334	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:175618334G>A	uc002ujd.2	-	7	828	c.750C>T	c.(748-750)TTC>TTT	p.F250F	uc002uiw.2_Intron|CHRNA1_uc002uje.2_Silent_p.F225F|CHRNA1_uc002ujf.3_Silent_p.F225F	NM_001039523	NP_001034612	P02708	ACHA_HUMAN	nicotinic cholinergic receptor alpha 1 isoform a	250	Extracellular.				muscle cell homeostasis|neuromuscular junction development|neuromuscular process|neuromuscular synaptic transmission|neuron homeostasis|regulation of action potential in neuron|skeletal muscle contraction|skeletal muscle tissue growth	cell junction|cell surface|neuromuscular junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GCTGCATGACGAAGTGGTAGG	0.587													55	87					0	0	1	0	0	
CHN1	1123	broad.mit.edu	37	2	175676246	175676246	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:175676246G>A	uc002uji.2	-	10	1487	c.957C>T	c.(955-957)TTC>TTT	p.F319F	CHN1_uc010zeq.1_Silent_p.F293F|CHN1_uc002ujj.2_Silent_p.F94F|CHN1_uc002ujg.2_Silent_p.F194F	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	319	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			TACCTCTGTCGAAAGCCATCT	0.318			T	TAF15	extraskeletal myxoid chondrosarcoma								8	18					0	0	1	0	0	
HOXD13	3239	broad.mit.edu	37	2	176959337	176959337	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:176959337A>G	uc002ukf.1	+	2	998	c.911A>G	c.(910-912)GAC>GGC	p.D304G		NM_000523	NP_000514	P35453	HXD13_HUMAN	homeobox D13	304	Homeobox.				skeletal system development|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0526)|READ - Rectum adenocarcinoma(9;0.0678)		ATTAACAAGGACAAGCGGCGG	0.463			T	NUP98	AML*								24	42					0	0	1	0	0	
HOXD11	3237	broad.mit.edu	37	2	176973735	176973735	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:176973735G>A	uc002uki.2	+	2	882	c.882G>A	c.(880-882)GAG>GAA	p.E294E	HOXD11_uc010fqx.2_RNA	NM_021192	NP_067015	P31277	HXD11_HUMAN	homeobox D11	294	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		TAAACAAAGAGAAAAGACTTC	0.478			T	NUP98	AML								43	93					0	0	1	0	0	
HNRNPA3	220988	broad.mit.edu	37	2	178081278	178081278	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:178081278G>A	uc002ulb.1	+	5	707	c.601G>A	c.(601-603)GCC>ACC	p.A201T	HNRNPA3_uc002ulc.1_Missense_Mutation_p.A201T|HNRNPA3_uc002uld.2_Missense_Mutation_p.A179T|HNRNPA3_uc002ule.2_5'Flank	NM_194247	NP_919223	P51991	ROA3_HUMAN	heterogeneous nuclear ribonucleoprotein A3	201	RRM 2.					catalytic step 2 spliceosome|nucleolus|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(2)	2						AGTGAAAAAGGCCCTTTCTAA	0.343													45	92					0	0	1	0	0	
TTC30B	150737	broad.mit.edu	37	2	178416077	178416077	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:178416077T>G	uc002uln.2	-	1	1448	c.1415A>C	c.(1414-1416)GAA>GCA	p.E472A	TTC30B_uc010zfc.1_Missense_Mutation_p.E244A	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	472	TPR 7.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			GTATTTGTTTTCCTGCATGAA	0.388													59	196					0	0	1	0	0	
TTC30B	150737	broad.mit.edu	37	2	178416157	178416157	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:178416157C>A	uc002uln.2	-	1	1368	c.1335G>T	c.(1333-1335)AAG>AAT	p.K445N	TTC30B_uc010zfc.1_Missense_Mutation_p.K217N	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	445	TPR 6.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			TGCGGAAGATCTTTTCCACCA	0.388													97	464					5.48297e-45	6.80965e-45	1	1	0	
TTC30B	150737	broad.mit.edu	37	2	178416244	178416244	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:178416244A>G	uc002uln.2	-	1	1281	c.1248T>C	c.(1246-1248)TAT>TAC	p.Y416Y	TTC30B_uc010zfc.1_Silent_p.Y188Y	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	416	TPR 5.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			TGGTTTCATCATATTCATTCA	0.403													76	239					0	0	1	0	0	
PDE11A	50940	broad.mit.edu	37	2	178879182	178879182	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:178879182T>C	uc002ulq.2	-	2	1236	c.918A>G	c.(916-918)CGA>CGG	p.R306R	PDE11A_uc002ulr.2_Silent_p.R56R|PDE11A_uc002ult.1_Silent_p.R56R	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	306	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			CATTGAATCGTCGATCCTAAA	0.398									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				17	29					0	0	1	0	0	
PDE11A	50940	broad.mit.edu	37	2	178969129	178969129	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:178969129T>G	uc002ulr.2	-	2	161	c.62A>C	c.(61-63)AAG>ACG	p.K21T	PDE11A_uc002ult.1_Missense_Mutation_p.K21T	NM_001077197	NP_001070665	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 3	Error:Variant_position_missing_in_Q9HCR9_after_alignment					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			GATTTTCACCTTTTTCCACTG	0.423									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				41	80					0	0	1	0	0	
OSBPL6	114880	broad.mit.edu	37	2	179193050	179193050	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179193050A>C	uc002ulx.2	+	5	641	c.263A>C	c.(262-264)AAA>ACA	p.K88T	OSBPL6_uc002ulw.2_Missense_Mutation_p.K88T|OSBPL6_uc002uly.2_Missense_Mutation_p.K88T|OSBPL6_uc010zfe.1_Missense_Mutation_p.K88T|OSBPL6_uc002ulz.2_Missense_Mutation_p.K88T|OSBPL6_uc002uma.2_Missense_Mutation_p.K67T	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	88	PH.				lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			AAACCAGACAAACATGAGGGC	0.373													42	79					0	0	1	0	0	
OSBPL6	114880	broad.mit.edu	37	2	179197688	179197688	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179197688G>T	uc002ulx.2	+	8	955	c.577G>T	c.(577-579)GAT>TAT	p.D193Y	OSBPL6_uc002ulw.2_Missense_Mutation_p.D193Y|OSBPL6_uc002uly.2_Missense_Mutation_p.D193Y|OSBPL6_uc010zfe.1_Missense_Mutation_p.D193Y|OSBPL6_uc002ulz.2_Missense_Mutation_p.D193Y|OSBPL6_uc002uma.2_Missense_Mutation_p.D172Y	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	193					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			ATCACCAAGAGATGCTAGTTT	0.408													55	84					7.77372e-23	9.28856e-23	1	1	0	
OSBPL6	114880	broad.mit.edu	37	2	179236941	179236941	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179236941T>G	uc002ulx.2	+	14	1754	c.1376T>G	c.(1375-1377)ATT>AGT	p.I459S	OSBPL6_uc002ulw.2_Intron|OSBPL6_uc002uly.2_Missense_Mutation_p.I484S|OSBPL6_uc010zfe.1_Missense_Mutation_p.I428S|OSBPL6_uc002ulz.2_Intron|OSBPL6_uc002uma.2_Missense_Mutation_p.I463S	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	459					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			AGTGTAAATATTATTCCTAGC	0.323													29	45					0	0	1	0	0	
OSBPL6	114880	broad.mit.edu	37	2	179260240	179260240	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179260240G>A	uc002ulx.2	+	25	3137	c.2759G>A	c.(2758-2760)CGA>CAA	p.R920Q	OSBPL6_uc002uly.2_Missense_Mutation_p.R945Q|OSBPL6_uc010zfe.1_Missense_Mutation_p.R889Q|OSBPL6_uc002ulz.2_Missense_Mutation_p.R884Q|OSBPL6_uc002uma.2_Missense_Mutation_p.R924Q	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	920					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TGGGAGCTTCGAAAGGACCCT	0.393													31	50					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179393423	179393423	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179393423G>A	uc010zfg.1	-	309	99575	c.99351C>T	c.(99349-99351)ATC>ATT	p.I33117I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.I26812I|TTN_uc010zfi.1_Silent_p.I26745I|TTN_uc010zfj.1_Silent_p.I26620I|TTN_uc002umq.2_Silent_p.I134I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	34044							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACACTTGACGATTCCTTCCT	0.443													11	18					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179398239	179398239	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179398239A>C	uc010zfg.1	-	307	95623	c.95399T>G	c.(95398-95400)TTA>TGA	p.L31800*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.L25495*|TTN_uc010zfi.1_Nonsense_Mutation_p.L25428*|TTN_uc010zfj.1_Nonsense_Mutation_p.L25303*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32727							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTGCCAGTAACCTTTTGAA	0.458													17	40					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179418747	179418747	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179418747T>C	uc010zfg.1	-	282	81611	c.81387A>G	c.(81385-81387)GGA>GGG	p.G27129G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G20824G|TTN_uc010zfi.1_Silent_p.G20757G|TTN_uc010zfj.1_Silent_p.G20632G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28056							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCTGTGAGTCCTGTTACTT	0.403													31	102					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179427058	179427058	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179427058A>G	uc010zfg.1	-	275	76321	c.76097T>C	c.(76096-76098)TTC>TCC	p.F25366S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.F19061S|TTN_uc010zfi.1_Missense_Mutation_p.F18994S|TTN_uc010zfj.1_Missense_Mutation_p.F18869S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26293							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCTACCCTGAAGACATACTC	0.428													31	58					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179431219	179431219	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179431219C>T	uc010zfg.1	-	275	72160	c.71936G>A	c.(71935-71937)CGA>CAA	p.R23979Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R17674Q|TTN_uc010zfi.1_Missense_Mutation_p.R17607Q|TTN_uc010zfj.1_Missense_Mutation_p.R17482Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24906							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATTTCAAATCGAGTGACTCT	0.423													53	138					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179433949	179433949	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179433949A>C	uc010zfg.1	-	275	69430	c.69206T>G	c.(69205-69207)ATT>AGT	p.I23069S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.I16764S|TTN_uc010zfi.1_Missense_Mutation_p.I16697S|TTN_uc010zfj.1_Missense_Mutation_p.I16572S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23996							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCTCAACAATGTAATTTTT	0.393													92	205					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179438397	179438397	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179438397T>G	uc010zfg.1	-	275	64982	c.64758A>C	c.(64756-64758)AAA>AAC	p.K21586N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K15281N|TTN_uc010zfi.1_Missense_Mutation_p.K15214N|TTN_uc010zfj.1_Missense_Mutation_p.K15089N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22513							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATGATCAATTTTGGCACCTC	0.443													86	170					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179438979	179438979	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179438979G>A	uc010zfg.1	-	275	64400	c.64176C>T	c.(64174-64176)ATC>ATT	p.I21392I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.I15087I|TTN_uc010zfi.1_Silent_p.I15020I|TTN_uc010zfj.1_Silent_p.I14895I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22319							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTTTCAACGATATAACTGG	0.413													19	51					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179442082	179442082	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179442082T>C	uc010zfg.1	-	273	61500	c.61276A>G	c.(61276-61278)ACT>GCT	p.T20426A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T14121A|TTN_uc010zfi.1_Missense_Mutation_p.T14054A|TTN_uc010zfj.1_Missense_Mutation_p.T13929A|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21353							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTATCTGAGTGATATCTGAT	0.418													19	51					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179446661	179446661	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179446661G>T	uc010zfg.1	-	264	58955	c.58731C>A	c.(58729-58731)TCC>TCA	p.S19577S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.S13272S|TTN_uc010zfi.1_Silent_p.S13205S|TTN_uc010zfj.1_Silent_p.S13080S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20504							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGCGGCCTTGGATGCGTCAC	0.438													24	55					1.9806e-07	2.07987e-07	1	1	0	
TTN	7273	broad.mit.edu	37	2	179449185	179449185	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179449185C>T	uc010zfg.1	-	260	57613	c.57389G>A	c.(57388-57390)CGC>CAC	p.R19130H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R12825H|TTN_uc010zfi.1_Missense_Mutation_p.R12758H|TTN_uc010zfj.1_Missense_Mutation_p.R12633H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20057							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTTCCTTGCGTTCAATCAG	0.443													25	61					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179469823	179469823	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179469823T>G	uc010zfg.1	-	229	46601	c.46377A>C	c.(46375-46377)AAA>AAC	p.K15459N	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K9154N|TTN_uc010zfi.1_Missense_Mutation_p.K9087N|TTN_uc010zfj.1_Missense_Mutation_p.K8962N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16386							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAAGCTCAGTTTTTGCCTCAC	0.453													43	84					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179485561	179485561	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179485561T>C	uc010zfg.1	-	196	38296	c.38072A>G	c.(38071-38073)GAC>GGC	p.D12691G	TTN_uc010zfh.1_Missense_Mutation_p.D6386G|TTN_uc010zfi.1_Missense_Mutation_p.D6319G|TTN_uc010zfj.1_Missense_Mutation_p.D6194G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13618							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGACTAGGTCTTTTTGGAG	0.373													59	125					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179485594	179485594	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179485594A>C	uc010zfg.1	-	196	38263	c.38039T>G	c.(38038-38040)TTT>TGT	p.F12680C	TTN_uc010zfh.1_Missense_Mutation_p.F6375C|TTN_uc010zfi.1_Missense_Mutation_p.F6308C|TTN_uc010zfj.1_Missense_Mutation_p.F6183C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13607							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAACTATCAAATATAGCTTC	0.398													41	109					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179495649	179495649	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179495649C>T	uc010zfg.1	-	187	36556	c.36332G>A	c.(36331-36333)CGA>CAA	p.R12111Q	TTN_uc010zfh.1_Missense_Mutation_p.R5806Q|TTN_uc010zfi.1_Missense_Mutation_p.R5739Q|TTN_uc010zfj.1_Missense_Mutation_p.R5614Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13038							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGCAGGGGTCGCACCAGTTT	0.488													20	56					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179496966	179496966	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179496966G>A	uc010zfg.1	-	185	36175	c.35951C>T	c.(35950-35952)TCG>TTG	p.S11984L	TTN_uc010zfh.1_Missense_Mutation_p.S5679L|TTN_uc010zfi.1_Missense_Mutation_p.S5612L|TTN_uc010zfj.1_Missense_Mutation_p.S5487L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12911							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATGTGATCGAATGAGTTTT	0.443													5	21					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179528389	179528389	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179528389G>A	uc010zfk.1	-	16	1483	c.935C>T	c.(934-936)GCT>GTT	p.A312V	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11524							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTAGGAGGAGCCACTGGCGC	0.393													102	218					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179547583	179547583	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179547583C>A	uc010zfg.1	-	132	29427	c.29203G>T	c.(29203-29205)GAA>TAA	p.E9735*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.E6396*|TTN_uc010fre.1_Nonsense_Mutation_p.E582*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10662							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAACAGCTTCTTCTTCTAGG	0.328													12	43					2.80697e-09	3.01096e-09	1	1	0	
TTN	7273	broad.mit.edu	37	2	179549099	179549099	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179549099G>T	uc010zfg.1	-	129	29172	c.28948C>A	c.(28948-28950)CTT>ATT	p.L9650I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L6311I|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10577							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAGCAACAAGAACTTTTTCT	0.373													12	32					3.27435e-08	3.46512e-08	1	1	0	
TTN	7273	broad.mit.edu	37	2	179567308	179567308	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179567308G>T	uc010zfg.1	-	104	26798	c.26574C>A	c.(26572-26574)TCC>TCA	p.S8858S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S5519S|TTN_uc010fre.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9785							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATCATCAAAGGACACTTCAC	0.438													52	99					4.01344e-20	4.73134e-20	1	1	0	
TTN	7273	broad.mit.edu	37	2	179569059	179569059	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179569059G>T	uc010zfg.1	-	103	26530	c.26306C>A	c.(26305-26307)TCT>TAT	p.S8769Y	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S5430Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9696							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTGGTACAGAAAATTGGCA	0.423													62	96					1.22119e-34	1.50504e-34	1	1	0	
TTN	7273	broad.mit.edu	37	2	179575894	179575894	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179575894T>C	uc010zfg.1	-	94	24561	c.24337A>G	c.(24337-24339)ACA>GCA	p.T8113A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.T4774A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9040							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATTGAGTGTGGCTGTATTG	0.443													52	115					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179579257	179579257	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179579257G>A	uc010zfg.1	-	88	22736	c.22512C>T	c.(22510-22512)GTC>GTT	p.V7504V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V4165V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8431							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTACCAACGACAGTAGATA	0.423													17	30					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179581897	179581897	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179581897C>T	uc010zfg.1	-	85	22056	c.21832G>A	c.(21832-21834)GAT>AAT	p.D7278N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D3939N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8205							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCCCGGCATCGCCTTTGCCT	0.488													18	40					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179589096	179589096	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179589096G>T	uc010zfg.1	-	69	17498	c.17274C>A	c.(17272-17274)ATC>ATA	p.I5758I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I2419I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6685							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAAGGAAGAGATTTTGTTGT	0.443													7	45					5.18039e-06	5.37459e-06	1	1	0	
TTN	7273	broad.mit.edu	37	2	179593390	179593390	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179593390G>T	uc010zfg.1	-	63	15755	c.15531C>A	c.(15529-15531)GAC>GAA	p.D5177E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1838E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6104							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGTTTCCCGTCTTTAAGCC	0.403													21	30					1.00905e-13	1.13002e-13	1	1	0	
TTN	7273	broad.mit.edu	37	2	179596150	179596150	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179596150C>T	uc010zfg.1	-	56	13835	c.13611G>A	c.(13609-13611)GAG>GAA	p.E4537E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.E1198E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5464							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACATTGTTCTCAAAGGTCA	0.438													75	121					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179605416	179605416	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179605416C>T	uc010zfh.1	-	46	12255	c.12031G>A	c.(12031-12033)GAG>AAG	p.E4011K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E3944K|TTN_uc010zfj.1_Missense_Mutation_p.E3819K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3939							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGATTTTCTCGGTATCTGAT	0.413													38	58					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179606118	179606118	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179606118G>A	uc010zfh.1	-	46	11553	c.11329C>T	c.(11329-11331)CGC>TGC	p.R3777C	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.R3710C|TTN_uc010zfj.1_Missense_Mutation_p.R3585C|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAGCACAGCGAATTGGTTTT	0.483													81	121					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179606407	179606407	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179606407A>C	uc010zfh.1	-	46	11264	c.11040T>G	c.(11038-11040)ATT>ATG	p.I3680M	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.I3613M|TTN_uc010zfj.1_Missense_Mutation_p.I3488M|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGAACCACTGAATTTTAGGTT	0.413													38	71					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179610839	179610839	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179610839T>C	uc002unb.2	-	46	16512	c.16288A>G	c.(16288-16290)AGC>GGC	p.S5430G	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTCCTCGCTAATCACGTAT	0.393													43	134					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179613827	179613827	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179613827T>G	uc002unb.2	-	46	13524	c.13300A>C	c.(13300-13302)AAA>CAA	p.K4434Q	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATGAATCTTTTGTATTGTAA	0.343													36	57					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179632515	179632515	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179632515G>A	uc010zfg.1	-	40	9666	c.9442C>T	c.(9442-9444)CGC>TGC	p.R3148C	TTN_uc010zfh.1_Missense_Mutation_p.R3102C|TTN_uc010zfi.1_Missense_Mutation_p.R3102C|TTN_uc010zfj.1_Missense_Mutation_p.R3102C|TTN_uc002unb.2_Missense_Mutation_p.R3148C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3148							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCGGATGCGAACATCTCTG	0.398													51	110					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179638812	179638812	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179638812T>C	uc010zfg.1	-	31	7307	c.7083A>G	c.(7081-7083)GGA>GGG	p.G2361G	TTN_uc010zfh.1_Silent_p.G2315G|TTN_uc010zfi.1_Silent_p.G2315G|TTN_uc010zfj.1_Silent_p.G2315G|TTN_uc002unb.2_Silent_p.G2361G|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2361							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTCACTAAGTCCTTGTAGGA	0.428													31	81					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179643841	179643841	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179643841G>T	uc010zfg.1	-	24	4192	c.3968C>A	c.(3967-3969)GCT>GAT	p.A1323D	TTN_uc010zfh.1_Missense_Mutation_p.A1277D|TTN_uc010zfi.1_Missense_Mutation_p.A1277D|TTN_uc010zfj.1_Missense_Mutation_p.A1277D|TTN_uc002unb.2_Missense_Mutation_p.A1323D|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1323							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGTACCAAGCAATCTGCAA	0.358													14	40					0.000151284	0.000154703	1	1	0	
TTN	7273	broad.mit.edu	37	2	179647545	179647545	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179647545G>A	uc010zfg.1	-	18	3312	c.3088C>T	c.(3088-3090)CTG>TTG	p.L1030L	TTN_uc010zfh.1_Silent_p.L984L|TTN_uc010zfi.1_Silent_p.L984L|TTN_uc010zfj.1_Silent_p.L984L|TTN_uc002unb.2_Silent_p.L1030L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1030							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCACAGCCAGATAGCAGGAT	0.498													22	39					0	0	1	0	0	
CCDC141	285025	broad.mit.edu	37	2	179701651	179701651	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179701651A>G	uc002unf.1	-	13	2627	c.2570T>C	c.(2569-2571)GTA>GCA	p.V857A	CCDC141_uc002une.1_Missense_Mutation_p.V307A	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	857	Ig-like.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			AAATCCTGTTACTTCAACTTC	0.448													21	60					0	0	1	0	0	
ZNF385B	151126	broad.mit.edu	37	2	180348096	180348096	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:180348096C>T	uc002unn.3	-	6	1177	c.573G>A	c.(571-573)ACG>ACA	p.T191T	ZNF385B_uc002unj.2_Silent_p.T89T|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Silent_p.T88T|ZNF385B_uc002unm.2_Silent_p.T115T	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	191						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			GTTTATTTTTCGTTGCGTCTA	0.468													21	55					0	0	1	0	0	
CWC22	57703	broad.mit.edu	37	2	180810175	180810175	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:180810175T>C	uc010frh.1	-	20	2708	c.2408A>G	c.(2407-2409)GAC>GGC	p.D803G	CWC22_uc002uno.2_Missense_Mutation_p.D325G|CWC22_uc002unp.2_Missense_Mutation_p.D803G	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	803						catalytic step 2 spliceosome	protein binding|RNA binding				0						TTGGTCTCTGTCATTCGCAAC	0.353													70	152					0	0	1	0	0	
ZNF804A	91752	broad.mit.edu	37	2	185801356	185801356	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:185801356A>G	uc002uph.2	+	4	1827	c.1233A>G	c.(1231-1233)ATA>ATG	p.I411M		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	411						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ACATAACTATACATAAGAAAA	0.383													40	104					0	0	1	0	0	
FAM171B	165215	broad.mit.edu	37	2	187626873	187626873	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:187626873G>A	uc002ups.2	+	8	1916	c.1804G>A	c.(1804-1806)GAA>AAA	p.E602K	FAM171B_uc002upr.1_Missense_Mutation_p.E569K|FAM171B_uc002upt.2_Missense_Mutation_p.E71K	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	602	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						AGATGCCAGGGAAGAGGATAT	0.493													37	45					0	0	1	0	0	
ZSWIM2	151112	broad.mit.edu	37	2	187693422	187693422	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:187693422A>G	uc002upu.1	-	9	1231	c.1191T>C	c.(1189-1191)AAT>AAC	p.N397N		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	397					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TCACTGCTGAATTTTTCCAAG	0.363													14	40					0	0	1	0	0	
COL5A2	1290	broad.mit.edu	37	2	189899735	189899735	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:189899735T>G	uc002uqk.2	-	53	4535	c.4260A>C	c.(4258-4260)AAA>AAC	p.K1420N	COL5A2_uc010frx.2_Missense_Mutation_p.K996N	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1420	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCACAGCTTTTTTGAGGTTCT	0.388													38	86					0	0	1	0	0	
ANKAR	150709	broad.mit.edu	37	2	190602514	190602514	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:190602514G>A	uc002uqw.1	+	17	3316	c.3316G>A	c.(3316-3318)GAA>AAA	p.E1106K	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA|ANKAR_uc002uqy.1_Missense_Mutation_p.E273K	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	1177						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			ATCTATTTTTGAACGTTTTCT	0.313													12	31					0	0	1	0	0	
ANKAR	150709	broad.mit.edu	37	2	190611312	190611312	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:190611312A>G	uc002uqw.1	+	22	4051	c.4051A>G	c.(4051-4053)AAA>GAA	p.K1351E	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA|ANKAR_uc002uqy.1_3'UTR	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	1422						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			CCAACTTGGGAAACATGTCCA	0.328													31	36					0	0	1	0	0	
ORMDL1	94101	broad.mit.edu	37	2	190647161	190647161	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:190647161A>C	uc002urb.3	-	1	948	c.161T>G	c.(160-162)ATT>AGT	p.I54S	PMS1_uc010zga.1_5'Flank|PMS1_uc010zgb.1_5'Flank|PMS1_uc002urh.3_5'Flank|PMS1_uc002urk.3_5'Flank|PMS1_uc002uri.3_5'Flank|PMS1_uc010zgc.1_5'Flank|PMS1_uc010zgd.1_5'Flank|PMS1_uc002urj.2_5'Flank|ORMDL1_uc002urc.3_Missense_Mutation_p.I54S|ORMDL1_uc002urd.3_Missense_Mutation_p.I54S|ORMDL1_uc002ure.3_Missense_Mutation_p.I54S|ORMDL1_uc002urf.3_Missense_Mutation_p.I54S|PMS1_uc010zfz.1_5'Flank	NM_016467	NP_057551	Q9P0S3	ORML1_HUMAN	ORM1-like 1	54					ceramide metabolic process	endoplasmic reticulum membrane|integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(117;0.00177)|Epithelial(96;0.0317)|all cancers(119;0.0889)			ATTATGTATAATATTTGTTAA	0.269													14	21					0	0	1	0	0	
GLS	2744	broad.mit.edu	37	2	191759964	191759964	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:191759964A>C	uc002usf.2	+	2	737	c.473A>C	c.(472-474)AAA>ACA	p.K158T	GLS_uc002usd.2_Missense_Mutation_p.K158T|GLS_uc002use.2_Missense_Mutation_p.K158T	NM_014905	NP_055720	O94925	GLSK_HUMAN	glutaminase precursor	158					cellular amino acid biosynthetic process|glutamate secretion|glutamine catabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity			ovary(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00625)|Epithelial(96;0.0744)|all cancers(119;0.181)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CCTGTTCATAAATTTATTACA	0.239													30	61					0	0	1	0	0	
MYO1B	4430	broad.mit.edu	37	2	192255065	192255065	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:192255065C>T	uc010fsg.2	+	18	2084	c.1829C>T	c.(1828-1830)GCT>GTT	p.A610V	MYO1B_uc002usq.2_Missense_Mutation_p.A610V|MYO1B_uc002usr.2_Missense_Mutation_p.A610V|MYO1B_uc002usu.2_5'Flank	NM_001130158	NP_001123630	O43795	MYO1B_HUMAN	myosin IB isoform 1	610	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(5)|large_intestine(2)|ovary(1)	8			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.104)|all cancers(119;0.236)			TTCAACGAGGCTCTAGTGTGT	0.458													17	123					0	0	1	0	0	
SLC39A10	57181	broad.mit.edu	37	2	196544962	196544962	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:196544962A>C	uc002utg.3	+	2	410	c.196A>C	c.(196-198)AAA>CAA	p.K66Q	SLC39A10_uc002uth.3_Missense_Mutation_p.K66Q|SLC39A10_uc010zgp.1_Intron	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	66					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			CTATATTGAAAAACTTTTTGA	0.368													27	66					0	0	1	0	0	
DNAH7	56171	broad.mit.edu	37	2	196722258	196722258	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:196722258G>T	uc002utj.3	-	44	8358	c.8257C>A	c.(8257-8259)CAT>AAT	p.H2753N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2753	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCATATTCATGAAGTGACTGC	0.373													6	90					0.0293803	0.0295462	1	1	0	
STK17B	9262	broad.mit.edu	37	2	197002222	197002222	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:197002222G>A	uc002utk.2	-	8	1392	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	STK17B_uc010fsh.2_Silent_p.F356F	NM_004226	NP_004217	O94768	ST17B_HUMAN	serine/threonine kinase 17B	356					apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			lung(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.141)			ATGAGTCATCGAAACGAAATC	0.378													36	86					0	0	1	0	0	
STK17B	9262	broad.mit.edu	37	2	197002332	197002332	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:197002332A>G	uc002utk.2	-	8	1282	c.958T>C	c.(958-960)TCC>CCC	p.S320P	STK17B_uc010fsh.2_Missense_Mutation_p.S320P	NM_004226	NP_004217	O94768	ST17B_HUMAN	serine/threonine kinase 17B	320					apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			lung(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.141)			TCTTCAGAGGACCTTACAGAA	0.428													41	64					0	0	1	0	0	
HECW2	57520	broad.mit.edu	37	2	197105219	197105219	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:197105219C>A	uc002utm.1	-	21	3901	c.3718G>T	c.(3718-3720)GAC>TAC	p.D1240Y	HECW2_uc002utl.1_Missense_Mutation_p.D884Y	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1240	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CTCTGCAGGTCTTTTCTGGAG	0.423													39	70					6.48837e-15	7.35576e-15	1	1	0	
PGAP1	80055	broad.mit.edu	37	2	197729765	197729765	+	Missense_Mutation	SNP	C	T	T	rs139880907		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:197729765C>T	uc002utw.2	-	20	1921	c.1807G>A	c.(1807-1809)GTA>ATA	p.V603I	PGAP1_uc002utx.2_Missense_Mutation_p.V429I|PGAP1_uc002uty.1_Intron	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	603	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						ATATTAGATACGACATAAGCA	0.318													16	43					0	0	1	0	0	
ANKRD44	91526	broad.mit.edu	37	2	197986245	197986245	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:197986245T>C	uc002uuc.2	-	8	884	c.717A>G	c.(715-717)GGA>GGG	p.G239G	ANKRD44_uc002utz.3_5'UTR|ANKRD44_uc002uua.1_Silent_p.G214G|ANKRD44_uc002uub.2_Silent_p.G239G|ANKRD44_uc010zgw.1_Silent_p.G167G	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	239	ANK 8.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			GCGCTGTATTTCCATAGACAT	0.428													17	33					0	0	1	0	0	
RFTN2	130132	broad.mit.edu	37	2	198511371	198511371	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:198511371G>T	uc002uuo.3	-	2	561	c.159C>A	c.(157-159)GTC>GTA	p.V53V		NM_144629	NP_653230	Q52LD8	RFTN2_HUMAN	raftlin family member 2	53						plasma membrane					0						TTATCTTGATGACTTCTGGGT	0.308													10	33					7.48243e-07	7.81738e-07	1	1	0	
RFTN2	130132	broad.mit.edu	37	2	198540074	198540074	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:198540074C>T	uc002uuo.3	-	1	511	c.109G>A	c.(109-111)GAA>AAA	p.E37K		NM_144629	NP_653230	Q52LD8	RFTN2_HUMAN	raftlin family member 2	37						plasma membrane					0						AATACATATTCGTAAGCAAAT	0.363													44	101					0	0	1	0	0	
C2orf69	205327	broad.mit.edu	37	2	200789803	200789803	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:200789803A>G	uc010zhb.1	+	2	535	c.352A>G	c.(352-354)ACT>GCT	p.T118A		NM_153689	NP_710156	Q8N8R5	CB069_HUMAN	hypothetical protein LOC205327 precursor	118						extracellular region				central_nervous_system(1)	1						TGAAATTATGACTCGTCATCC	0.303													13	19					0	0	1	0	0	
C2orf60	129450	broad.mit.edu	37	2	200797994	200797994	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:200797994G>T	uc002uvi.3	-	8	1010	c.744C>A	c.(742-744)ATC>ATA	p.I248I	C2orf60_uc002uvj.3_Silent_p.I85I|C2orf60_uc002uvk.3_RNA|C2orf60_uc010fss.2_Silent_p.I85I	NM_001039693	NP_001034782	A2RUC4	TYW5_HUMAN	hypothetical protein LOC129450	248	JmjC.				wybutosine biosynthetic process		iron ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein homodimerization activity|tRNA binding				0						GCTTCCAAAAGATATTCACTC	0.353													38	52					1.96642e-18	2.29832e-18	1	1	0	
SGOL2	151246	broad.mit.edu	37	2	201436553	201436553	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:201436553G>T	uc002uvw.2	+	7	1597	c.1484G>T	c.(1483-1485)AGA>ATA	p.R495I	SGOL2_uc010zhd.1_Missense_Mutation_p.R495I|SGOL2_uc010zhe.1_Missense_Mutation_p.R495I	NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2 isoform 1	495					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)|skin(2)	4						AAGGAGAAAAGAATAACAAAT	0.368													68	135					4.67498e-28	5.68127e-28	1	1	0	
AOX1	316	broad.mit.edu	37	2	201467062	201467062	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:201467062C>T	uc002uvx.2	+	6	593	c.492C>T	c.(490-492)TTC>TTT	p.F164F		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	164					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	GCAAGACTTTCTGTAAAGTAA	0.453													25	60					0	0	1	0	0	
AOX1	316	broad.mit.edu	37	2	201477409	201477409	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:201477409C>T	uc002uvx.2	+	14	1442	c.1341C>T	c.(1339-1341)GTC>GTT	p.V447V	AOX1_uc010zhf.1_Silent_p.V3V|AOX1_uc010fsu.2_5'UTR	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	447					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	GAATGAGAGTCTTTTTTGGAG	0.473													35	78					0	0	1	0	0	
FZD7	8324	broad.mit.edu	37	2	202900702	202900702	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:202900702C>T	uc002uyw.1	+	1	1393	c.1332C>T	c.(1330-1332)TTC>TTT	p.F444F		NM_003507	NP_003498	O75084	FZD7_HUMAN	frizzled 7 precursor	444	Helical; Name=5; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(2)|ovary(1)|breast(1)	4						TGGCCGGCTTCGTGTCCCTCT	0.607											OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	59					0	0	1	0	0	
BMPR2	659	broad.mit.edu	37	2	203329536	203329536	+	Silent	SNP	G	A	A	rs147207234	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:203329536G>A	uc002uzf.3	+	2	1229	c.81G>A	c.(79-81)TCG>TCA	p.S27S	BMPR2_uc010ftr.2_Silent_p.S27S|BMPR2_uc002uze.2_Silent_p.S27S	NM_001204	NP_001195	Q13873	BMPR2_HUMAN	bone morphogenetic protein receptor type II	27	Extracellular (Potential).				anterior/posterior pattern formation|BMP signaling pathway|cellular response to starvation|lung alveolus development|mesoderm formation|negative regulation of cell growth|negative regulation of systemic arterial blood pressure|negative regulation of vasoconstriction|positive regulation of BMP signaling pathway|positive regulation of bone mineralization|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of epithelial cell migration|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|regulation of lung blood pressure|transcription from RNA polymerase II promoter|vascular endothelial growth factor receptor signaling pathway	integral to plasma membrane	ATP binding|metal ion binding|transforming growth factor beta receptor activity			ovary(4)|breast(2)|large_intestine(1)|stomach(1)|pancreas(1)	9						TTTTAGCTTCGCAGAATCAAG	0.313													28	69					0	0	1	0	0	
WDR12	55759	broad.mit.edu	37	2	203749137	203749137	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:203749137C>T	uc002uzl.2	-	9	1613	c.863G>A	c.(862-864)GGC>GAC	p.G288D	WDR12_uc010ftt.2_Missense_Mutation_p.G288D	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	288	WD 4.|Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						CTTAAGACTGCCAGACTCAAC	0.408													30	69					0	0	1	0	0	
NBEAL1	65065	broad.mit.edu	37	2	204034508	204034508	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:204034508T>G	uc002uzt.3	+	38	6282	c.5949T>G	c.(5947-5949)CAT>CAG	p.H1983Q	NBEAL1_uc002uzs.3_Missense_Mutation_p.H693Q	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	1983							binding			ovary(1)|skin(1)	2						TGTCACTTCATTCCCCAAATA	0.328													27	67					0	0	1	0	0	
NBEAL1	65065	broad.mit.edu	37	2	204073897	204073897	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:204073897T>G	uc002uzt.3	+	52	7883	c.7550T>G	c.(7549-7551)ATT>AGT	p.I2517S	NBEAL1_uc002uzs.3_Missense_Mutation_p.I1158S|NBEAL1_uc002uzu.2_Missense_Mutation_p.I12S	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2517	WD 2.						binding			ovary(1)|skin(1)	2						GGAACGGTGATTATACATACC	0.378													40	64					0	0	1	0	0	
RAPH1	65059	broad.mit.edu	37	2	204305381	204305381	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:204305381C>T	uc002vad.2	-	14	2757	c.2532G>A	c.(2530-2532)CAG>CAA	p.Q844Q		NM_213589	NP_998754	Q70E73	RAPH1_HUMAN	Ras association and pleckstrin homology domains	844					cell-matrix adhesion|signal transduction	cytoplasm|cytoskeleton|filopodium|lamellipodium|nucleus|plasma membrane				ovary(3)|breast(3)|central_nervous_system(2)|lung(1)|skin(1)	10						CACAGAAGCTCTGTTGCTTGG	0.592													34	71					0	0	1	0	0	
PARD3B	117583	broad.mit.edu	37	2	205978262	205978262	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:205978262G>T	uc002var.1	+	6	848	c.641G>T	c.(640-642)GGA>GTA	p.G214V	PARD3B_uc010fub.1_Missense_Mutation_p.G214V|PARD3B_uc002vao.1_Missense_Mutation_p.G214V|PARD3B_uc002vap.1_Missense_Mutation_p.G214V|PARD3B_uc002vaq.1_Missense_Mutation_p.G214V	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	214	PDZ 1.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		GGCCCATTGGGAATACATGTA	0.428													20	35					1.01871e-10	1.10886e-10	1	1	0	
INO80D	54891	broad.mit.edu	37	2	206870101	206870101	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:206870101A>G	uc002vaz.3	-	11	2480	c.2075T>C	c.(2074-2076)GTG>GCG	p.V692A		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	692					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						TGTGGAGAACACCCCTATTCC	0.502													35	84					0	0	1	0	0	
EEF1B2	1933	broad.mit.edu	37	2	207026796	207026796	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:207026796G>A	uc002vbf.1	+	5	523	c.365G>A	c.(364-366)CGT>CAT	p.R122H	NDUFS1_uc010ziq.1_5'Flank|NDUFS1_uc002vbe.2_5'Flank|NDUFS1_uc010zir.1_5'Flank|NDUFS1_uc010zis.1_5'Flank|NDUFS1_uc010zit.1_5'Flank|NDUFS1_uc010ziu.1_5'Flank|EEF1B2_uc002vbg.1_Missense_Mutation_p.R122H|EEF1B2_uc002vbh.1_Missense_Mutation_p.R122H|SNORA41_uc002vbj.2_5'Flank	NM_001037663	NP_001032752	P24534	EF1B_HUMAN	eukaryotic translation elongation factor 1 beta	122						cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						AGGGAAGAACGTCTTGCACAA	0.348													33	142					0	0	1	0	0	
GPR1	2825	broad.mit.edu	37	2	207040930	207040930	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:207040930G>T	uc002vbl.3	-	3	1428	c.1042C>A	c.(1042-1044)CTG>ATG	p.L348M	GPR1_uc010fue.2_Missense_Mutation_p.L348M|GPR1_uc010fuf.2_Missense_Mutation_p.L348M	NM_005279	NP_005270	P46091	GPR1_HUMAN	G protein-coupled receptor 1	348	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Lung NSC(271;7.93e-06)|Renal(323;0.000147)|Hepatocellular(293;0.000888)		UCEC - Uterine corpus endometrioid carcinoma (47;0.000241)|Epithelial(149;1.91e-37)|STAD - Stomach adenocarcinoma(1183;0.00178)|Lung(261;0.111)|LUSC - Lung squamous cell carcinoma(261;0.184)		AGGAGACACAGATTCTTGGTT	0.428													17	39					1.56452e-12	1.73502e-12	1	1	0	
DYTN	391475	broad.mit.edu	37	2	207527726	207527726	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:207527726C>T	uc002vbr.1	-	11	1651	c.1534G>A	c.(1534-1536)GCA>ACA	p.A512T		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	512	Potential.					plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		ATGTTACCTGCCTCTTTCTTT	0.488													54	99					0	0	1	0	0	
CREB1	1385	broad.mit.edu	37	2	208442362	208442362	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:208442362C>T	uc002vcc.2	+	8	1115	c.864C>T	c.(862-864)GTC>GTT	p.V288V	CREB1_uc002vcd.2_Silent_p.V274V	NM_134442	NP_604391	P16220	CREB1_HUMAN	cAMP responsive element binding protein 1	288	Basic motif.				activation of phospholipase C activity|axon guidance|innate immune response|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|protein phosphorylation|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway		protein dimerization activity|transcription cofactor activity		EWSR1/CREB1(42)	soft_tissue(42)|breast(1)|central_nervous_system(1)	44				LUSC - Lung squamous cell carcinoma(261;0.0768)|Epithelial(149;0.127)|Lung(261;0.145)	Adenosine monophosphate(DB00131)|Bromocriptine(DB01200)|Naloxone(DB01183)	AGAGAGAGGTCCGTCTAATGA	0.458			T	EWSR1	clear cell sarcoma|angiomatoid fibrous histiocytoma								11	40					0	0	1	0	0	
FAM119A	151194	broad.mit.edu	37	2	208478021	208478021	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:208478021C>A	uc002vcf.2	-	4	566	c.406G>T	c.(406-408)GAA>TAA	p.E136*	FAM119A_uc002vce.2_Intron|FAM119A_uc010fuk.1_Nonsense_Mutation_p.E136*|FAM119A_uc002vcg.3_Nonsense_Mutation_p.E136*	NM_145280	NP_660323	Q8WXB1	MT21A_HUMAN	hypothetical protein LOC151194	136						integral to membrane	methyltransferase activity				0				LUSC - Lung squamous cell carcinoma(261;0.0705)|Epithelial(149;0.131)|Lung(261;0.135)		AGGTCAAATTCTCCAGGAGAA	0.383													53	87					1.39843e-22	1.66947e-22	1	1	0	
PLEKHM3	389072	broad.mit.edu	37	2	208841424	208841424	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:208841424C>T	uc002vcl.2	-	3	1987	c.1497G>A	c.(1495-1497)ACG>ACA	p.T499T	PLEKHM3_uc002vcm.2_Silent_p.T499T	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	499					intracellular signal transduction		metal ion binding			ovary(1)	1						AAGACAAAGTCGTCAAAATGC	0.448													12	29					0	0	1	0	0	
CRYGA	1418	broad.mit.edu	37	2	209025593	209025593	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:209025593A>C	uc002vcq.3	-	3	477	c.460T>G	c.(460-462)TAC>GAC	p.Y154D		NM_014617	NP_055432	P11844	CRGA_HUMAN	crystallin, gamma A	154	Beta/gamma crystallin 'Greek key' 4.				visual perception		structural constituent of eye lens				0				Epithelial(149;0.067)|LUSC - Lung squamous cell carcinoma(261;0.0708)|Lung(261;0.135)		CAGTCGTGGTACCTTCTGTAG	0.562													61	124					0	0	1	0	0	
MAP2	4133	broad.mit.edu	37	2	210557748	210557748	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:210557748C>A	uc002vde.1	+	7	1102	c.854C>A	c.(853-855)TCT>TAT	p.S285Y	MAP2_uc002vdc.1_Missense_Mutation_p.S285Y|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.S281Y	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	285					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	GCCCCCATATCTCCTGGCCCT	0.458													25	52					3.08376e-08	3.26638e-08	1	1	0	
MAP2	4133	broad.mit.edu	37	2	210559824	210559824	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:210559824C>T	uc002vde.1	+	7	3178	c.2930C>T	c.(2929-2931)GCC>GTC	p.A977V	MAP2_uc002vdc.1_Missense_Mutation_p.A977V|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.A973V	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	977					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	AAAGAACATGCCAAGAAAACT	0.393													30	79					0	0	1	0	0	
C2orf67	151050	broad.mit.edu	37	2	211018339	211018339	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:211018339C>A	uc002vds.2	-	2	1176	c.968G>T	c.(967-969)AGA>ATA	p.R323I	C2orf67_uc002vdt.2_Missense_Mutation_p.R323I|C2orf67_uc002vdw.2_Missense_Mutation_p.R323I|C2orf67_uc002vdy.1_Missense_Mutation_p.R323I|C2orf67_uc002vdv.2_Missense_Mutation_p.R323I|C2orf67_uc002vdx.1_Missense_Mutation_p.R323I	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	323										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		AAATGCAAATCTTTGGATTTC	0.418													44	93					6.21074e-16	7.10493e-16	1	1	0	
C2orf67	151050	broad.mit.edu	37	2	211018713	211018713	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:211018713C>A	uc002vds.2	-	2	802	c.594G>T	c.(592-594)AAG>AAT	p.K198N	C2orf67_uc002vdt.2_Missense_Mutation_p.K198N|C2orf67_uc002vdw.2_Missense_Mutation_p.K198N|C2orf67_uc002vdy.1_Missense_Mutation_p.K198N|C2orf67_uc002vdv.2_Missense_Mutation_p.K198N|C2orf67_uc002vdx.1_Missense_Mutation_p.K198N	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	198										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		GTACAATTTTCTTTTGAGTAC	0.368													47	96					6.08268e-21	7.19453e-21	1	1	0	
CPS1	1373	broad.mit.edu	37	2	211466941	211466941	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:211466941A>C	uc002vee.3	+	16	1855	c.1723A>C	c.(1723-1725)AAG>CAG	p.K575Q	CPS1_uc010fur.2_Missense_Mutation_p.K581Q|CPS1_uc010fus.2_Missense_Mutation_p.K124Q	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	575	ATP-grasp 1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GGATGCACTGAAGGCAGCAGA	0.502													21	47					0	0	1	0	0	
CPS1	1373	broad.mit.edu	37	2	211471539	211471539	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:211471539G>A	uc002vee.3	+	18	2198	c.2066G>A	c.(2065-2067)CGC>CAC	p.R689H	CPS1_uc010fur.2_Missense_Mutation_p.R695H|CPS1_uc010fus.2_Missense_Mutation_p.R238H	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	689	ATP-grasp 1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AATGTTGTTCGCCACTTGGGC	0.468													26	39					0	0	1	0	0	
ERBB4	2066	broad.mit.edu	37	2	212812260	212812260	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:212812260G>A	uc002veg.1	-	3	414	c.316C>T	c.(316-318)CGT>TGT	p.R106C	ERBB4_uc002veh.1_Missense_Mutation_p.R106C|ERBB4_uc010zji.1_Missense_Mutation_p.R106C|ERBB4_uc010zjj.1_Missense_Mutation_p.R106C|ERBB4_uc010fut.1_Missense_Mutation_p.R106C	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	106	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TTTGTCCCACGAATAATGCGT	0.383										TSP Lung(8;0.080)			21	48					0	0	1	0	0	
ERBB4	2066	broad.mit.edu	37	2	212989563	212989563	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:212989563G>A	uc002veg.1	-	2	246	c.148C>T	c.(148-150)CGC>TGC	p.R50C	ERBB4_uc002veh.1_Missense_Mutation_p.R50C|ERBB4_uc010zji.1_Missense_Mutation_p.R50C|ERBB4_uc010zjj.1_Missense_Mutation_p.R50C|ERBB4_uc010fut.1_Missense_Mutation_p.R50C	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	50	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TAGTACTTGCGCAAGGCTCGG	0.493										TSP Lung(8;0.080)			23	50					0	0	1	0	0	
SPAG16	79582	broad.mit.edu	37	2	214181952	214181952	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:214181952A>C	uc002veq.2	+	5	500	c.408A>C	c.(406-408)TTA>TTC	p.L136F	SPAG16_uc010fuz.1_Intron|SPAG16_uc002ver.2_Missense_Mutation_p.L82F|SPAG16_uc010zjk.1_Missense_Mutation_p.L42F|SPAG16_uc002veo.2_Missense_Mutation_p.L136F|SPAG16_uc002vep.1_Intron|SPAG16_uc002ves.1_Missense_Mutation_p.L105F	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	136					cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GGTATGAGTTAATACAGAAAG	0.323													22	38					0	0	1	0	0	
ABCA12	26154	broad.mit.edu	37	2	215917230	215917230	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:215917230C>T	uc002vew.2	-	5	708	c.488G>A	c.(487-489)CGA>CAA	p.R163Q	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	163					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GCCAAGAATTCGTGCGAGCAC	0.393													21	43					0	0	1	0	0	
FN1	2335	broad.mit.edu	37	2	216242982	216242982	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:216242982C>T	uc002vfa.2	-	35	5892	c.5626G>A	c.(5626-5628)GCC>ACC	p.A1876T	FN1_uc002vfb.2_Missense_Mutation_p.A1695T|FN1_uc002vfc.2_Missense_Mutation_p.A1695T|FN1_uc002vfd.2_Missense_Mutation_p.A1876T|FN1_uc002vfe.2_Missense_Mutation_p.A1785T|FN1_uc002vff.2_Missense_Mutation_p.A1785T|FN1_uc002vfg.2_Missense_Mutation_p.A1695T|FN1_uc002vfh.2_Missense_Mutation_p.A1695T|FN1_uc002vfi.2_Missense_Mutation_p.A1876T|FN1_uc002vfj.2_Missense_Mutation_p.A1786T|FN1_uc002vez.2_Missense_Mutation_p.A70T|FN1_uc010zjp.1_Missense_Mutation_p.A413T|FN1_uc002vfk.1_RNA|FN1_uc010fva.1_RNA|FN1_uc010fvb.1_RNA|FN1_uc010fvc.1_Missense_Mutation_p.A238T|FN1_uc010fvd.1_Intron	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1876	Binds to FBLN1.|Heparin-binding 2.|Fibronectin type-III 14.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TATTTGGTGGCCACCTAGAGA	0.428													15	32					0	0	1	0	0	
FN1	2335	broad.mit.edu	37	2	216274830	216274830	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:216274830G>T	uc002vfa.2	-	14	2215	c.1949C>A	c.(1948-1950)TCT>TAT	p.S650Y	FN1_uc002vfb.2_Missense_Mutation_p.S650Y|FN1_uc002vfc.2_Missense_Mutation_p.S650Y|FN1_uc002vfd.2_Missense_Mutation_p.S650Y|FN1_uc002vfe.2_Missense_Mutation_p.S650Y|FN1_uc002vff.2_Missense_Mutation_p.S650Y|FN1_uc002vfg.2_Missense_Mutation_p.S650Y|FN1_uc002vfh.2_Missense_Mutation_p.S650Y|FN1_uc002vfi.2_Missense_Mutation_p.S650Y|FN1_uc002vfj.2_Missense_Mutation_p.S650Y	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	650	Fibronectin type-III 1.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACGGCCTACAGAATTTTTCTG	0.363													9	20					1.12685e-05	1.16379e-05	1	1	0	
MREG	55686	broad.mit.edu	37	2	216809618	216809618	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:216809618C>A	uc002vfo.2	-	5	909	c.613G>T	c.(613-615)GAA>TAA	p.E205*	MREG_uc002vfq.2_RNA	NM_018000	NP_060470	Q8N565	MREG_HUMAN	whn-dependent transcript 2	205						apical plasma membrane					0		Renal(323;0.0328)		Epithelial(149;4.64e-07)|all cancers(144;5.56e-05)|LUSC - Lung squamous cell carcinoma(224;0.00832)|Lung(261;0.0111)		TAGTGCAGTTCTTTCTGGCCA	0.507													20	31					1.10923e-09	1.19438e-09	1	1	0	
MREG	55686	broad.mit.edu	37	2	216809669	216809669	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:216809669G>A	uc002vfo.2	-	5	858	c.562C>T	c.(562-564)CGA>TGA	p.R188*	MREG_uc002vfq.2_RNA	NM_018000	NP_060470	Q8N565	MREG_HUMAN	whn-dependent transcript 2	188						apical plasma membrane					0		Renal(323;0.0328)		Epithelial(149;4.64e-07)|all cancers(144;5.56e-05)|LUSC - Lung squamous cell carcinoma(224;0.00832)|Lung(261;0.0111)		GGGTAAGTTCGACGAGCAAGC	0.498													15	25					0	0	1	0	0	
SMARCAL1	50485	broad.mit.edu	37	2	217279808	217279808	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:217279808A>G	uc002vgc.3	+	3	711	c.381A>G	c.(379-381)GCA>GCG	p.A127A	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Silent_p.A127A|SMARCAL1_uc010fvg.2_Silent_p.A127A	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	127					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		CTCCCTTGGCACAAAGTCCTC	0.502									Schimke_Immuno-Osseous_Dysplasia				30	62					0	0	1	0	0	
TNS1	7145	broad.mit.edu	37	2	218700848	218700848	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:218700848A>G	uc002vgt.2	-	18	3117	c.2719T>C	c.(2719-2721)TCT>CCT	p.S907P	TNS1_uc002vgr.2_Missense_Mutation_p.S907P|TNS1_uc002vgs.2_Missense_Mutation_p.S907P|TNS1_uc010zjv.1_Missense_Mutation_p.S907P	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	907						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		GCTTCTGGAGACTGGTTCTCA	0.647													24	50					0	0	1	0	0	
CXCR2	3579	broad.mit.edu	37	2	218999817	218999817	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:218999817C>T	uc002vgz.1	+	4	518	c.293C>T	c.(292-294)GCC>GTC	p.A98V	CXCR2_uc002vha.1_Missense_Mutation_p.A98V|CXCR2_uc002vhb.1_Missense_Mutation_p.A98V	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	98	Helical; Name=2; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						CTACTCTTTGCCCTGACCTTG	0.547													52	86					0	0	1	0	0	
CXCR2	3579	broad.mit.edu	37	2	219000231	219000231	+	Missense_Mutation	SNP	G	A	A	rs144013681		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219000231G>A	uc002vgz.1	+	4	932	c.707G>A	c.(706-708)CGT>CAT	p.R236H	CXCR2_uc002vha.1_Missense_Mutation_p.R236H|CXCR2_uc002vhb.1_Missense_Mutation_p.R236H	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	236	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						TTCACCCTGCGTACGCTGTTT	0.567													115	189					0	0	1	0	0	
CTDSP1	58190	broad.mit.edu	37	2	219267801	219267801	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219267801G>A	uc002vhy.2	+	5	758	c.422G>A	c.(421-423)CGA>CAA	p.R141Q	CTDSP1_uc002vhx.2_Missense_Mutation_p.R140Q|CTDSP1_uc002vhz.2_5'UTR	NM_021198	NP_067021	Q9GZU7	CTDS1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	141	FCP1 homology.				protein dephosphorylation|regulation of transcription from RNA polymerase II promoter	nucleus	CTD phosphatase activity|metal ion binding|protein binding			ovary(1)	1		Renal(207;0.0915)		Epithelial(149;9.96e-07)|all cancers(144;0.00017)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TTCCTGCAGCGAATGGGCGAG	0.667													24	37					0	0	1	0	0	
USP37	57695	broad.mit.edu	37	2	219321865	219321865	+	Missense_Mutation	SNP	G	A	A	rs4292082		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219321865G>A	uc002vie.2	-	24	3116	c.2663C>T	c.(2662-2664)TCG>TTG	p.S888L	USP37_uc010fvs.1_Missense_Mutation_p.S888L|USP37_uc010zkf.1_Missense_Mutation_p.S888L|USP37_uc002vif.2_Missense_Mutation_p.S888L|USP37_uc002vig.2_Missense_Mutation_p.S794L	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	888					ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		GAGCCGGTACGAATGAGGCAG	0.353													15	24					0	0	1	0	0	
USP37	57695	broad.mit.edu	37	2	219341566	219341566	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219341566T>G	uc002vie.2	-	19	2493	c.2040A>C	c.(2038-2040)GAA>GAC	p.E680D	USP37_uc010fvs.1_Missense_Mutation_p.E680D|USP37_uc010zkf.1_Missense_Mutation_p.E680D|USP37_uc002vif.2_Missense_Mutation_p.E680D|USP37_uc002vig.2_Missense_Mutation_p.E586D	NM_020935	NP_065986	Q86T82	UBP37_HUMAN	ubiquitin specific peptidase 37	680					ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			skin(3)|ovary(1)|prostate(1)	5		Renal(207;0.0915)		Epithelial(149;1.08e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.00375)|Lung(261;0.00487)		TACTTACTTTTTCCAGGTCTT	0.373													10	59					0	0	1	0	0	
ZNF142	7701	broad.mit.edu	37	2	219507616	219507616	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219507616G>A	uc002vin.2	-	8	4059	c.3623C>T	c.(3622-3624)TCG>TTG	p.S1208L	ZNF142_uc002vil.2_Missense_Mutation_p.S1169L|ZNF142_uc010fvt.2_Missense_Mutation_p.S1045L|ZNF142_uc002vim.2_Missense_Mutation_p.S1045L	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	1208	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		TCTGGTGGTCGAAAAGTCACA	0.607													30	71					0	0	1	0	0	
ZNF142	7701	broad.mit.edu	37	2	219509723	219509723	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219509723G>A	uc002vin.2	-	8	1952	c.1516C>T	c.(1516-1518)CGG>TGG	p.R506W	ZNF142_uc002vil.2_Missense_Mutation_p.R467W|ZNF142_uc010fvt.2_Missense_Mutation_p.R343W|ZNF142_uc002vim.2_Missense_Mutation_p.R343W	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	506	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CCCTGATGCCGCAGCTTGTGG	0.577													24	53					0	0	1	0	0	
BCS1L	617	broad.mit.edu	37	2	219526163	219526163	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219526163C>T	uc002vio.2	+	3	773	c.355C>T	c.(355-357)CGA>TGA	p.R119*	ZNF142_uc002vin.2_5'Flank|ZNF142_uc010fvt.2_5'Flank|ZNF142_uc002vim.2_5'Flank|BCS1L_uc002vip.2_Nonsense_Mutation_p.R119*|BCS1L_uc002viq.2_Nonsense_Mutation_p.R119*|BCS1L_uc010fvu.2_Nonsense_Mutation_p.R119*|BCS1L_uc010fvv.2_Nonsense_Mutation_p.R119*|BCS1L_uc002vir.2_Nonsense_Mutation_p.R119*|BCS1L_uc002vis.2_Nonsense_Mutation_p.R119*	NM_004328	NP_004319	Q9Y276	BCS1_HUMAN	BCS1-like	119	Mitochondrial matrix (Potential).				mitochondrial respiratory chain complex I assembly|mitochondrial respiratory chain complex III assembly|mitochondrial respiratory chain complex IV assembly	integral to membrane|mitochondrial respiratory chain complex III	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Renal(207;0.0474)		Epithelial(149;7.12e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGAACGAAGTCGAGAGATGCA	0.488													32	61					0	0	1	0	0	
STK36	27148	broad.mit.edu	37	2	219563571	219563571	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219563571G>T	uc002viu.2	+	26	3570	c.3304G>T	c.(3304-3306)GAG>TAG	p.E1102*	STK36_uc002viv.2_Nonsense_Mutation_p.E1081*|STK36_uc002viw.2_Nonsense_Mutation_p.E280*|STK36_uc002vix.2_Nonsense_Mutation_p.E147*	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	1102					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		CTTTATCCAAGAGCTTCTGGC	0.592													51	81					1.56793e-16	1.8045e-16	1	1	0	
TTLL4	9654	broad.mit.edu	37	2	219617583	219617583	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219617583G>A	uc002viy.2	+	17	3444	c.3074G>A	c.(3073-3075)CGA>CAA	p.R1025Q	TTLL4_uc010zkl.1_Missense_Mutation_p.R860Q|TTLL4_uc010fvx.2_Missense_Mutation_p.R961Q|TTLL4_uc010zkm.1_Missense_Mutation_p.R228Q	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	1025					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		CAGTTTGAACGAATTTTTCCT	0.458													55	84					0	0	1	0	0	
WNT10A	80326	broad.mit.edu	37	2	219754759	219754759	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219754759G>A	uc002vjd.1	+	3	893	c.430G>A	c.(430-432)GCC>ACC	p.A144T		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	144					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity	p.A144V(1)		lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGTGGTGCACGCCGTGTCCAA	0.562													19	50					0	0	1	0	0	
CCDC108	255101	broad.mit.edu	37	2	219903158	219903158	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:219903158G>A	uc002vjl.1	-	4	380	c.296C>T	c.(295-297)GCC>GTC	p.A99V	CCDC108_uc010zkp.1_Missense_Mutation_p.A88V|CCDC108_uc010zkq.1_Missense_Mutation_p.A34V|CCDC108_uc002vjn.2_Missense_Mutation_p.A34V	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	99						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCAGGGATGGCCACTGTGCT	0.522													19	46					0	0	1	0	0	
ATG9A	79065	broad.mit.edu	37	2	220087075	220087075	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:220087075G>A	uc002vke.1	-	12	2132	c.1946C>T	c.(1945-1947)GCC>GTC	p.A649V	ABCB6_uc010fwe.1_5'Flank|ABCB6_uc010zku.1_5'Flank|ATG9A_uc002vkd.1_RNA|ATG9A_uc002vkf.1_Missense_Mutation_p.A649V	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	649	Cytoplasmic (By similarity).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CAGGGCAGAGGCGACTTCAGC	0.662													31	68					0	0	1	0	0	
PTPRN	5798	broad.mit.edu	37	2	220162693	220162693	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:220162693G>A	uc002vkz.2	-	13	1890	c.1801C>T	c.(1801-1803)CGG>TGG	p.R601W	PTPRN_uc010zlc.1_Missense_Mutation_p.R511W|PTPRN_uc002vla.2_Missense_Mutation_p.R572W	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	601	Cytoplasmic (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GCATGCTGCCGCACACACAGA	0.667													10	26					0	0	1	0	0	
SPEG	10290	broad.mit.edu	37	2	220309737	220309737	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:220309737G>A	uc010fwg.2	+	3	669	c.669G>A	c.(667-669)CGG>CGA	p.R223R	SPEG_uc002vlm.2_RNA|SPEG_uc010fwh.1_Intron|SPEG_uc002vln.1_5'UTR	NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	223					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CCGGGCCACGGCACCTGGGGG	0.711													15	7					0	0	1	0	0	
SLC4A3	6508	broad.mit.edu	37	2	220500178	220500178	+	Silent	SNP	C	T	T	rs140228124	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:220500178C>T	uc002vmp.3	+	13	2201	c.1932C>T	c.(1930-1932)GTC>GTT	p.V644V	SLC4A3_uc002vmo.3_Silent_p.V671V|SLC4A3_uc010fwm.2_Silent_p.V194V|SLC4A3_uc010fwn.1_Silent_p.V153V	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	644	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGACCAAAGTCGAGATGACCA	0.647													19	24					0	0	1	0	0	
EPHA4	2043	broad.mit.edu	37	2	222308273	222308273	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:222308273G>A	uc002vmq.2	-	10	1870	c.1828C>T	c.(1828-1830)CGA>TGA	p.R610*	EPHA4_uc002vmr.2_Nonsense_Mutation_p.R610*|EPHA4_uc010zlm.1_Nonsense_Mutation_p.R551*|EPHA4_uc010zln.1_Nonsense_Mutation_p.R610*	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	610	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		GCAAACTCTCGCACTGCTTGG	0.418													37	58					0	0	1	0	0	
EPHA4	2043	broad.mit.edu	37	2	222433473	222433473	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:222433473C>A	uc002vmq.2	-	2	166	c.124G>T	c.(124-126)GAA>TAA	p.E42*	EPHA4_uc002vmr.2_Nonsense_Mutation_p.E42*|EPHA4_uc010zlm.1_Intron|EPHA4_uc010zln.1_Nonsense_Mutation_p.E42*	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	42	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CACCCAAGTTCTCCCTGAACA	0.398													7	23					0.000157383	0.000160819	1	1	0	
PAX3	5077	broad.mit.edu	37	2	223096870	223096870	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:223096870C>A	uc010fwo.2	-	5	1085	c.719G>T	c.(718-720)AGA>ATA	p.R240I	PAX3_uc002vmt.1_Missense_Mutation_p.R240I|PAX3_uc002vmy.1_Missense_Mutation_p.R239I|PAX3_uc002vmv.1_Missense_Mutation_p.R240I|PAX3_uc002vmw.1_Missense_Mutation_p.R240I|PAX3_uc002vmx.1_Missense_Mutation_p.R240I	NM_181457	NP_852122	P23760	PAX3_HUMAN	paired box 3 isoform PAX3	240	Homeobox.				apoptosis|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX3/FOXO1(749)|PAX3/NCOA1(8)|PAX3/NCOA2(4)	soft_tissue(761)|ovary(4)|skin(1)	766		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;1.85e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTAATGAGTTCTCTCAAAAGC	0.522			T	FOXO1A|NCOA1	alveolar rhabdomyosarcoma		Waardenburg syndrome; craniofacial-deafness-hand syndrome						64	99					7.75977e-34	9.55048e-34	1	1	0	
ACSL3	2181	broad.mit.edu	37	2	223783787	223783787	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:223783787A>C	uc002vni.2	+	7	1123	c.672A>C	c.(670-672)ATA>ATC	p.I224I	ACSL3_uc002vnj.2_Silent_p.I224I	NM_004457	NP_004448	O95573	ACSL3_HUMAN	acyl-CoA synthetase long-chain family member 3	224	Cytoplasmic (Potential).				long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|fatty-acyl-CoA synthase activity|long-chain fatty acid-CoA ligase activity|protein binding			ovary(2)	2		Renal(207;0.0183)		Epithelial(121;1.28e-10)|all cancers(144;8.06e-08)|Lung(261;0.00834)|LUSC - Lung squamous cell carcinoma(224;0.00864)	Icosapent(DB00159)	TCTAGGATATAGTTTCTTTGG	0.433			T	ETV1	prostate								16	27					0	0	1	0	0	
CUL3	8452	broad.mit.edu	37	2	225378310	225378310	+	Silent	SNP	G	A	A	rs17408300	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:225378310G>A	uc002vny.2	-	5	969	c.585C>T	c.(583-585)CTC>CTT	p.L195L	CUL3_uc010zls.1_Silent_p.L129L|CUL3_uc010fwy.1_Silent_p.L201L	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	195					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		ATCTTCCTTCGAGACCTAAAA	0.303													4	41					0	0	1	0	0	
KIAA1486	57624	broad.mit.edu	37	2	226446931	226446931	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:226446931C>T	uc002voe.2	+	4	973	c.798C>T	c.(796-798)GCC>GCT	p.A266A	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.A36A	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	266										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		AGAGCGAGGCCGTCTACGAGG	0.562													50	121					0	0	1	0	0	
IRS1	3667	broad.mit.edu	37	2	227661066	227661066	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:227661066G>A	uc002voh.3	-	1	2441	c.2389C>T	c.(2389-2391)CGC>TGC	p.R797C		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	797					fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		TAGAGAAGGCGACCAGAGCTA	0.617													52	137					0	0	1	0	0	
COL4A4	1286	broad.mit.edu	37	2	227946898	227946898	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:227946898C>T	uc010zlt.1	-	23	2283	c.1629G>A	c.(1627-1629)AAG>AAA	p.K543K		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	543	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AGGCACCATGCTTTCCCTTGG	0.413													57	109					0	0	1	0	0	
COL4A4	1286	broad.mit.edu	37	2	227946900	227946900	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:227946900T>G	uc010zlt.1	-	23	2281	c.1627A>C	c.(1627-1629)AAG>CAG	p.K543Q		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	543	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GCACCATGCTTTCCCTTGGTG	0.418													56	108					0	0	1	0	0	
COL4A3	1285	broad.mit.edu	37	2	228163401	228163401	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:228163401C>T	uc002vom.1	+	43	3917	c.3755C>T	c.(3754-3756)GCG>GTG	p.A1252V	COL4A3_uc002von.1_Missense_Mutation_p.A1252V|COL4A3_uc002voo.1_Missense_Mutation_p.A1252V|COL4A3_uc002vop.1_Missense_Mutation_p.A1252V|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1252	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		AATTCAGGTGCGCCTGGTCCC	0.483													27	53					0	0	1	0	0	
COL4A3	1285	broad.mit.edu	37	2	228163523	228163523	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:228163523C>T	uc002vom.1	+	43	4039	c.3877C>T	c.(3877-3879)CGT>TGT	p.R1293C	COL4A3_uc002von.1_Missense_Mutation_p.R1293C|COL4A3_uc002voo.1_Missense_Mutation_p.R1293C|COL4A3_uc002vop.1_Missense_Mutation_p.R1293C|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1293	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		ACCACCAGGTCGTCTGGTGAG	0.373													27	59					0	0	1	0	0	
SLC19A3	80704	broad.mit.edu	37	2	228563936	228563936	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:228563936C>T	uc002vpi.2	-	3	584	c.495G>A	c.(493-495)GCG>GCA	p.A165A	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Silent_p.A161A	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	165	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	ACGACATGTTCGCCAGGGATA	0.542													43	151					0	0	1	0	0	
WDR69	164781	broad.mit.edu	37	2	228769707	228769707	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:228769707G>A	uc002vpn.1	+	8	790	c.711G>A	c.(709-711)GGG>GGA	p.G237G	WDR69_uc010zlw.1_Silent_p.G222G|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	237	WD 4.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		TCATCACGGGGTCTTTTGATC	0.428													48	88					0	0	1	0	0	
SPHKAP	80309	broad.mit.edu	37	2	228886519	228886519	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:228886519T>C	uc002vpq.2	-	6	652	c.605A>G	c.(604-606)GAC>GGC	p.D202G	SPHKAP_uc002vpp.2_Missense_Mutation_p.D202G|SPHKAP_uc010zlx.1_Missense_Mutation_p.D202G	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	202						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ACAGTTCGTGTCATCCTCCAG	0.463													30	96					0	0	1	0	0	
SPHKAP	80309	broad.mit.edu	37	2	228886659	228886659	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:228886659G>A	uc002vpq.2	-	6	512	c.465C>T	c.(463-465)TGC>TGT	p.C155C	SPHKAP_uc002vpp.2_Silent_p.C155C|SPHKAP_uc010zlx.1_Silent_p.C155C	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	155						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ATTGGACCAAGCAGATATCTG	0.428													28	35					0	0	1	0	0	
DNER	92737	broad.mit.edu	37	2	230253102	230253102	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:230253102G>A	uc002vpv.2	-	11	1881	c.1734C>T	c.(1732-1734)TGC>TGT	p.C578C		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	578	Extracellular (Potential).|EGF-like 9.				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		TGTCAATGTCGCACTCTTCAC	0.502													48	120					0	0	1	0	0	
SLC16A14	151473	broad.mit.edu	37	2	230910719	230910719	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:230910719C>T	uc002vqd.1	-	4	1486	c.1123G>A	c.(1123-1125)GAC>AAC	p.D375N	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.D375N|SLC16A14_uc002vqf.2_Missense_Mutation_p.D375N	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	375	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		CAAGGCAAGTCGGCTATGACG	0.443													24	72					0	0	1	0	0	
SLC16A14	151473	broad.mit.edu	37	2	230911332	230911332	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:230911332G>A	uc002vqd.1	-	4	873	c.510C>T	c.(508-510)TTC>TTT	p.F170F	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.F170F|SLC16A14_uc002vqf.2_Silent_p.F170F	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	170	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		GGAACGTACCGAATCCGGTCC	0.602													38	75					0	0	1	0	0	
SP110	3431	broad.mit.edu	37	2	231042332	231042332	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:231042332G>A	uc002vqh.3	-	14	1752	c.1512C>T	c.(1510-1512)GTC>GTT	p.V504V	SP110_uc002vqg.3_Silent_p.V504V|SP110_uc002vqi.3_Silent_p.V504V|SP110_uc010fxk.2_Silent_p.V502V|SP110_uc010fxj.2_Silent_p.V147V	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	504	SAND.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		CTTTTCCTTCGACTTCAAATT	0.433													112	207					0	0	1	0	0	
SP110	3431	broad.mit.edu	37	2	231081618	231081618	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:231081618C>T	uc002vqh.3	-	2	265	c.25G>A	c.(25-27)GAA>AAA	p.E9K	SP110_uc002vqg.3_Missense_Mutation_p.E9K|SP110_uc002vqi.3_Missense_Mutation_p.E9K|SP110_uc010fxk.2_Missense_Mutation_p.E9K	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	9	HSR.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		AGAGCCTCTTCCATGGCTCTT	0.363													27	28					0	0	1	0	0	
SP140L	93349	broad.mit.edu	37	2	231249977	231249977	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:231249977A>C	uc010fxm.1	+	9	833	c.742A>C	c.(742-744)AAG>CAG	p.K248Q	SP140L_uc010fxo.1_Missense_Mutation_p.K55Q	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	248						nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						CTCGAGTGAAAAGAAGGCGAA	0.463													28	48					0	0	1	0	0	
SP100	6672	broad.mit.edu	37	2	231380147	231380147	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:231380147C>T	uc002vqt.2	+	25	2573	c.2432C>T	c.(2431-2433)GCT>GTT	p.A811V	SP100_uc002vqu.1_Intron|SP100_uc010fxp.1_Intron	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	811	HMG box 2.				DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		AATAACACCGCTGCAGCTGAC	0.284													35	49					0	0	1	0	0	
B3GNT7	93010	broad.mit.edu	37	2	232262514	232262514	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:232262514T>C	uc002vrs.2	+	2	264	c.84T>C	c.(82-84)AGT>AGC	p.S28S		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	28	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		TCCAACGCAGTCTCACCCCTG	0.617													36	61					0	0	1	0	0	
NCL	4691	broad.mit.edu	37	2	232320835	232320835	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:232320835G>T	uc002vru.2	-	12	1859	c.1718C>A	c.(1717-1719)ACT>AAT	p.T573N	SNORA75_uc002vrv.1_5'Flank	NM_005381	NP_005372	P19338	NUCL_HUMAN	nucleolin	573	RRM 4.				angiogenesis	cell cortex|nucleolus|ribonucleoprotein complex	nucleotide binding|protein C-terminus binding|RNA binding|telomeric DNA binding			ovary(2)|pancreas(1)	3		Ovarian(221;1.34e-05)|Renal(207;0.0112)|Lung NSC(271;0.0339)|all_lung(227;0.0616)|all_hematologic(139;0.0748)|Hepatocellular(293;0.137)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.65e-111)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)|COAD - Colon adenocarcinoma(134;0.141)|STAD - Stomach adenocarcinoma(1183;0.18)		GACAAACAGAGTTTTGGATGG	0.438													17	44					1.33834e-09	1.43956e-09	1	1	0	
C2orf52	151477	broad.mit.edu	37	2	232373806	232373806	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:232373806G>A	uc002vrx.1	-	3	613	c.285C>T	c.(283-285)TGC>TGT	p.C95C		NR_024079				RecName: Full=Uncharacterized protein C2orf52;												0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;5.72e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)		GGCACACACAGCAGCTTGTCT	0.498													48	114					0	0	1	0	0	
CHRNG	1146	broad.mit.edu	37	2	233407646	233407646	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:233407646C>T	uc002vsx.1	+	7	680	c.659C>T	c.(658-660)GCG>GTG	p.A220V	CHRNG_uc010fye.1_Missense_Mutation_p.A168V	NM_005199	NP_005190	P07510	ACHG_HUMAN	cholinergic receptor, nicotinic, gamma	220	Extracellular (Potential).				muscle contraction	cell junction|postsynaptic membrane	acetylcholine receptor activity				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;6.39e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00079)|LUSC - Lung squamous cell carcinoma(224;0.00757)|Lung(119;0.0086)		CTGGACCCAGCGGCGCCAGCC	0.632													24	49					0	0	1	0	0	
GIGYF2	26058	broad.mit.edu	37	2	233655451	233655451	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:233655451T>C	uc002vti.3	+	12	1093	c.756T>C	c.(754-756)CGT>CGC	p.R252R	GIGYF2_uc010zmj.1_Silent_p.R252R|GIGYF2_uc002vtg.2_Silent_p.R246R|GIGYF2_uc002vtj.3_Silent_p.R274R|GIGYF2_uc002vtk.3_Silent_p.R252R|GIGYF2_uc002vth.3_Silent_p.R246R|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Silent_p.R83R	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	252	Arg-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		TGGAACGACGTCGGAGGTTTG	0.478													84	173					0	0	1	0	0	
SAG	6295	broad.mit.edu	37	2	234217909	234217909	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:234217909C>T	uc002vuh.2	+	2	462	c.74C>T	c.(73-75)TCG>TTG	p.S25L	SAG_uc002vug.2_Intron|SAG_uc010zmq.1_5'UTR	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	25					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		CGGGACAAATCGGTGAGTGGT	0.423													15	27					0	0	1	0	0	
SAG	6295	broad.mit.edu	37	2	234243632	234243632	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:234243632T>G	uc002vuh.2	+	11	1219	c.831T>G	c.(829-831)ACT>ACG	p.T277T	SAG_uc010zmq.1_Silent_p.T143T	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	277					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		CAAACAGCACTTTGACCAAGA	0.488													42	72					0	0	1	0	0	
USP40	55230	broad.mit.edu	37	2	234394260	234394260	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:234394260T>C	uc010zmr.1	-	29	3454	c.3454A>G	c.(3454-3456)ACC>GCC	p.T1152A	USP40_uc002vul.2_Missense_Mutation_p.T136A	NM_018218	NP_060688	Q9NVE5	UBP40_HUMAN	ubiquitin thioesterase 40	1140					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		TTCCTCTTGGTTATTTGTTGG	0.338													9	15					0	0	1	0	0	
UGT1A9	54600	broad.mit.edu	37	2	234580975	234580975	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:234580975A>C	uc002vus.2	+	1	432	c.395A>C	c.(394-396)AAA>ACA	p.K132T	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.K132T	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	132					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding	p.K132I(1)		ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	AAAGACAAAAAATTAGTAGAA	0.323													37	71					0	0	1	0	0	
UGT1A9	54600	broad.mit.edu	37	2	234581149	234581149	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:234581149T>C	uc002vus.2	+	1	606	c.569T>C	c.(568-570)GTC>GCC	p.V190A	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.V190A	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	190					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	CTTTCCTATGTCCCCAGAATT	0.483													89	177					0	0	1	0	0	
UGT1A7	54577	broad.mit.edu	37	2	234590891	234590891	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:234590891G>A	uc002vut.2	+	1	308	c.308G>A	c.(307-309)CGA>CAA	p.R103Q	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.R103Q	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	103					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GCACCATTGCGAAGTGCATTT	0.403													50	122					0	0	1	0	0	
UGT1A6	54578	broad.mit.edu	37	2	234602500	234602500	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:234602500G>T	uc002vuv.3	+	1	989	c.850G>T	c.(850-852)GAC>TAC	p.D284Y	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Missense_Mutation_p.D17Y|UGT1A6_uc010zmy.1_Missense_Mutation_p.D284Y	NM_001072	NP_001063	P19224	UD16_HUMAN	UDP glycosyltransferase 1 family, polypeptide A6	284					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity				0		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;5.86e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000384)|Lung(119;0.00306)|LUSC - Lung squamous cell carcinoma(224;0.00702)		GAAGAGGAAAGACTTGTCTCA	0.468													159	339					7.43762e-64	9.27664e-64	1	1	0	
UGT1A3	54659	broad.mit.edu	37	2	234638079	234638079	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:234638079A>G	uc002vuy.2	+	1	307	c.307A>G	c.(307-309)ACA>GCA	p.T103A	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Missense_Mutation_p.T103A	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	103					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GTACTTTGAAACAGAACATTT	0.408													64	114					0	0	1	0	0	
SPP2	6694	broad.mit.edu	37	2	234975882	234975882	+	Missense_Mutation	SNP	G	A	A	rs147173896	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:234975882G>A	uc002vvk.1	+	6	599	c.514G>A	c.(514-516)GAG>AAG	p.E172K	SPP2_uc010fyl.1_Missense_Mutation_p.E92K	NM_006944	NP_008875	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa precursor	172					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity				0		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		CATTTCAGACGAGTCCATAAG	0.398													42	104					0	0	1	0	0	
SH3BP4	23677	broad.mit.edu	37	2	235951091	235951091	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:235951091C>T	uc002vvp.2	+	4	2071	c.1678C>T	c.(1678-1680)CGA>TGA	p.R560*	SH3BP4_uc010fym.2_Nonsense_Mutation_p.R560*|SH3BP4_uc002vvq.2_Nonsense_Mutation_p.R560*	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	560					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		CAAAGTGGTGCGAGGATTCCA	0.557													42	78					0	0	1	0	0	
AGAP1	116987	broad.mit.edu	37	2	236659049	236659049	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:236659049A>C	uc002vvs.2	+	6	1185	c.590A>C	c.(589-591)AAG>ACG	p.K197T	AGAP1_uc002vvt.2_Missense_Mutation_p.K197T	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	197	Small GTPase-like.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						AGGGCGAGGAAGCTCTCCAAC	0.537													49	95					0	0	1	0	0	
ASB18	401036	broad.mit.edu	37	2	237172856	237172856	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:237172856C>T	uc010znh.1	-	1	133	c.133G>A	c.(133-135)GCT>ACT	p.A45T		NM_212556	NP_997721	Q6ZVZ8	ASB18_HUMAN	ankyrin repeat and SOCS box-containing 18	45					intracellular signal transduction					ovary(1)	1		all_hematologic(139;0.00615)|Renal(207;0.00963)|Breast(86;0.0126)|Acute lymphoblastic leukemia(138;0.0815)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)|GBM - Glioblastoma multiforme(43;0.244)		TCTATCACAGCGTCCACAGGC	0.517													20	34					0	0	1	0	0	
COL6A3	1293	broad.mit.edu	37	2	238275778	238275778	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:238275778G>T	uc002vwl.2	-	11	5337	c.5052C>A	c.(5050-5052)AAC>AAA	p.N1684K	COL6A3_uc002vwo.2_Missense_Mutation_p.N1478K|COL6A3_uc010znj.1_Missense_Mutation_p.N1077K	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1684	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TGGGGTCAGAGTTGTACTGGA	0.488													7	36					2.0095e-06	2.09092e-06	1	1	0	
COL6A3	1293	broad.mit.edu	37	2	238287555	238287555	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:238287555C>T	uc002vwl.2	-	6	2506	c.2221G>A	c.(2221-2223)GAA>AAA	p.E741K	COL6A3_uc002vwo.2_Missense_Mutation_p.E535K|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.E535K|COL6A3_uc002vwr.2_Missense_Mutation_p.E334K|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	741	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GGCACGTGTTCACGGATCCTG	0.602													17	42					0	0	1	0	0	
COL6A3	1293	broad.mit.edu	37	2	238289942	238289942	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:238289942T>G	uc002vwl.2	-	5	1798	c.1513A>C	c.(1513-1515)AAA>CAA	p.K505Q	COL6A3_uc002vwo.2_Missense_Mutation_p.K299Q|COL6A3_uc010znj.1_Missense_Mutation_p.K98Q|COL6A3_uc002vwq.2_Missense_Mutation_p.K299Q|COL6A3_uc002vwr.2_Missense_Mutation_p.K98Q|COL6A3_uc010znk.1_Missense_Mutation_p.K505Q	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	505	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ACTTCCCTTTTTGTTGGATGG	0.507													58	126					0	0	1	0	0	
COL6A3	1293	broad.mit.edu	37	2	238303336	238303336	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:238303336C>A	uc002vwl.2	-	3	888	c.603G>T	c.(601-603)GAG>GAT	p.E201D	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.E201D	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	201	VWFA 1.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AGGTAAAATTCTCTAGGTTGA	0.428													33	65					2.80507e-11	3.07208e-11	1	1	0	
RBM44	375316	broad.mit.edu	37	2	238726139	238726139	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:238726139G>T	uc002vxi.3	+	3	712	c.580G>T	c.(580-582)GAA>TAA	p.E194*		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	193							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		CAGTGCAGAAGAACAAGAATA	0.323													15	11					6.31663e-08	6.6657e-08	1	1	0	
RBM44	375316	broad.mit.edu	37	2	238726184	238726184	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:238726184G>A	uc002vxi.3	+	3	757	c.625G>A	c.(625-627)GCA>ACA	p.A209T		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	208							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		CCAAACAAAAGCATTAGATAT	0.343													13	24					0	0	1	0	0	
RBM44	375316	broad.mit.edu	37	2	238726378	238726378	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:238726378A>C	uc002vxi.3	+	3	951	c.819A>C	c.(817-819)GAA>GAC	p.E273D		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	272							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		TGTTAAGAGAATATCATGACC	0.363													12	25					0	0	1	0	0	
UBE2F	140739	broad.mit.edu	37	2	238940868	238940868	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:238940868C>T	uc002vxk.2	+	8	508	c.417C>T	c.(415-417)GTC>GTT	p.V139V	UBE2F_uc010znn.1_Silent_p.V107V|UBE2F_uc002vxl.2_RNA|UBE2F_uc010zno.1_RNA|UBE2F_uc010znp.1_Intron|SCLY_uc002vxm.3_5'UTR	NM_080678	NP_542409	Q969M7	UBE2F_HUMAN	NEDD8-conjugating enzyme	139					protein neddylation		ATP binding|NEDD8 ligase activity|protein binding				0		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;6.7e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|Kidney(56;3.53e-09)|KIRC - Kidney renal clear cell carcinoma(57;9.79e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000136)|Lung(119;0.0126)|LUSC - Lung squamous cell carcinoma(224;0.0301)		TTCAGGATGTCGTTTGGGGAT	0.338													6	18					0	0	1	0	0	
KLHL30	377007	broad.mit.edu	37	2	239049818	239049818	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:239049818C>T	uc002vxr.1	+	1	402	c.369C>T	c.(367-369)TTC>TTT	p.F123F		NM_198582	NP_940984	Q0D2K2	KLH30_HUMAN	kelch-like 30	141											0		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		TCTGTGAGTTCGGGGAGCAGC	0.657													4	24					0	0	1	0	0	
PER2	8864	broad.mit.edu	37	2	239161703	239161703	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:239161703C>T	uc002vyc.2	-	19	3198	c.2961G>A	c.(2959-2961)TCG>TCA	p.S987S	PER2_uc010znv.1_Silent_p.S987S	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	987					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GCTGCAGGGGCGAGCTGCTGC	0.682													30	46					0	0	1	0	0	
TRAF3IP1	26146	broad.mit.edu	37	2	239247082	239247082	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:239247082G>A	uc002vye.2	+	8	1262	c.1143G>A	c.(1141-1143)ACG>ACA	p.T381T	TRAF3IP1_uc002vyf.2_Intron	NM_015650	NP_056465	Q8TDR0	MIPT3_HUMAN	TNF receptor-associated factor 3 interacting	381	DISC1-interaction domain.					cytoplasm|cytoskeleton	protein binding			ovary(1)	1		all_epithelial(40;3.22e-10)|Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.156)|all_hematologic(139;0.182)		Epithelial(121;9.92e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.85e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.01e-07)|BRCA - Breast invasive adenocarcinoma(100;7.72e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0184)		ATCAGGAAACGACAACATCAG	0.294													16	20					0	0	1	0	0	
PPP1R7	5510	broad.mit.edu	37	2	242089964	242089964	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:242089964T>C	uc002wat.1	+	1	67	c.52_splice	c.e1+2	p.V18_splice	PPP1R7_uc010fzm.1_Intron|PPP1R7_uc002war.2_Splice_Site_p.V18_splice|PPP1R7_uc002was.2_Splice_Site_p.V18_splice|PPP1R7_uc002wau.1_Splice_Site_p.E18_splice|PASK_uc002wao.1_5'Flank|PASK_uc010zom.1_5'Flank|PASK_uc010fzl.1_5'Flank|PASK_uc010zon.1_5'Flank|PASK_uc002waq.2_5'Flank	NM_002712	NP_002703	Q15435	PP1R7_HUMAN	protein phosphatase 1, regulatory subunit 7							cytoplasm|nucleus	protein binding|protein phosphatase type 1 regulator activity			ovary(3)	3		all_cancers(19;6.1e-33)|all_epithelial(40;1.07e-13)|Breast(86;0.000141)|Renal(207;0.00528)|all_lung(227;0.0446)|Ovarian(221;0.104)|Lung NSC(271;0.115)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.92e-32)|all cancers(36;5.35e-29)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-14)|Kidney(56;4.23e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.24e-08)|BRCA - Breast invasive adenocarcinoma(100;3.56e-06)|Lung(119;0.000588)|LUSC - Lung squamous cell carcinoma(224;0.0048)|Colorectal(34;0.0137)|COAD - Colon adenocarcinoma(134;0.096)		TGATGGAGGGTGAGCGGCCCC	0.692													5	12					0	0	1	0	0	
ANO7	50636	broad.mit.edu	37	2	242151518	242151518	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:242151518G>A	uc002wax.2	+	16	1836	c.1733G>A	c.(1732-1734)CGC>CAC	p.R578H		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	578	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						GAAATGCACCGCACCCAGACC	0.582													22	64					0	0	1	0	0	
ANO7	50636	broad.mit.edu	37	2	242163334	242163334	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:242163334G>A	uc002wax.2	+	24	2812	c.2709G>A	c.(2707-2709)ACG>ACA	p.T903T		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	903	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						TTTTTGGAACGAACGGAACAA	0.602													30	63					0	0	1	0	0	
DEFB126	81623	broad.mit.edu	37	20	123301	123301	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:123301T>G	uc002wcx.2	+	1	50	c.32T>G	c.(31-33)TTT>TGT	p.F11C		NM_030931	NP_112193	Q9BYW3	DB126_HUMAN	defensin, beta 126 preproprotein	11					defense response to bacterium	extracellular region					0		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.122)			CTTGCAGTTTTTATGCTCCTG	0.463													101	212					0	0	1	0	0	
DEFB126	81623	broad.mit.edu	37	20	123306	123306	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:123306C>T	uc002wcx.2	+	1	55	c.37C>T	c.(37-39)CTC>TTC	p.L13F		NM_030931	NP_112193	Q9BYW3	DB126_HUMAN	defensin, beta 126 preproprotein	13					defense response to bacterium	extracellular region					0		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.122)			AGTTTTTATGCTCCTGGCCCA	0.478													100	204					0	0	1	0	0	
DEFB128	245939	broad.mit.edu	37	20	168744	168744	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:168744T>G	uc002wcz.1	-	2	65	c.65A>C	c.(64-66)AAA>ACA	p.K22T		NM_001037732	NP_001032821	Q7Z7B8	DB128_HUMAN	beta-defensin 128 precursor	22					defense response to bacterium	extracellular region		p.R20fs*4(1)		breast(1)	1		all_cancers(10;0.00499)|Lung NSC(37;0.227)	OV - Ovarian serous cystadenocarcinoma(29;0.122)			GAAGCATTTTTTGAGTCTTGC	0.413													74	132					0	0	1	0	0	
DEFB129	140881	broad.mit.edu	37	20	207940	207940	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:207940T>G	uc002wda.2	+	1	16	c.11T>G	c.(10-12)CTT>CGT	p.L4R		NM_080831	NP_543021	Q9H1M3	DB129_HUMAN	beta defensin 129 precursor	4					defense response to bacterium	extracellular region				ovary(1)	1		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.122)			ATGAAGCTCCTTTTTCCTATC	0.493													40	94					0	0	1	0	0	
CSNK2A1	1457	broad.mit.edu	37	20	480539	480539	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:480539A>C	uc002wdw.1	-	5	646	c.253T>G	c.(253-255)TTG>GTG	p.L85V	CSNK2A1_uc002wdx.1_Missense_Mutation_p.L85V|CSNK2A1_uc002wdy.1_5'UTR	NM_177559	NP_808227	P68400	CSK21_HUMAN	casein kinase II alpha 1 subunit isoform a	85	Protein kinase.				axon guidance|Wnt receptor signaling pathway	cytosol|NuRD complex|plasma membrane|Sin3 complex	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			ovary(1)	1		Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.0969)			AAATTCTCCAAAATCTTTATT	0.373													65	121					0	0	1	0	0	
SIRPG	55423	broad.mit.edu	37	20	1629814	1629814	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:1629814C>T	uc002wfm.1	-	2	379	c.314G>A	c.(313-315)CGC>CAC	p.R105H	SIRPG_uc002wfn.1_Missense_Mutation_p.R105H|SIRPG_uc002wfo.1_Missense_Mutation_p.R105H	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	105	Extracellular (Potential).|Ig-like V-type.				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GCTACTGATGCGGATGGAAAA	0.483													45	102					0	0	1	0	0	
PDYN	5173	broad.mit.edu	37	20	1961040	1961040	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:1961040G>A	uc010gaj.2	-	3	936	c.694C>T	c.(694-696)CGC>TGC	p.R232C	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.R232C|PDYN_uc010zpt.1_Missense_Mutation_p.R77C	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	232					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity	p.R232H(1)		upper_aerodigestive_tract(1)|ovary(1)	2						TTGAACTGGCGCCGGAGAAAA	0.537													67	121					0	0	1	0	0	
STK35	140901	broad.mit.edu	37	20	2097735	2097735	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:2097735C>T	uc010gak.2	+	3	1316	c.1316C>T	c.(1315-1317)GCC>GTC	p.A439V	STK35_uc010zpu.1_Intron|STK35_uc002wfw.3_Missense_Mutation_p.A306V	NM_080836	NP_543026	Q8TDR2	STK35_HUMAN	serine/threonine kinase 35	439	Protein kinase.					cytoplasm|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GACATCTTTGCCCTGGGCATT	0.498													29	55					0	0	1	0	0	
TGM6	343641	broad.mit.edu	37	20	2377260	2377260	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:2377260A>C	uc002wfy.1	+	4	594	c.533A>C	c.(532-534)AAC>ACC	p.N178T	TGM6_uc010gal.1_Missense_Mutation_p.N178T	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	178					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	CAGGGCTGGAACTACGGGCAG	0.617													4	29					0	0	1	0	0	
TGM6	343641	broad.mit.edu	37	20	2411116	2411116	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:2411116C>A	uc002wfy.1	+	11	1764	c.1703C>A	c.(1702-1704)TCT>TAT	p.S568Y	TGM6_uc010gal.1_Missense_Mutation_p.S568Y	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	568					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	ATTACAATATCTTACTCTAAG	0.468													27	87					6.32553e-13	7.03772e-13	1	1	0	
TMC2	117532	broad.mit.edu	37	20	2604963	2604963	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:2604963G>A	uc002wgf.1	+	17	2242	c.2227G>A	c.(2227-2229)GAT>AAT	p.D743N	TMC2_uc002wgg.1_Missense_Mutation_p.D727N	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	743	Extracellular (Potential).					integral to membrane				ovary(3)	3						CATTGAAAACGATTTCCCAAC	0.483													36	67					0	0	1	0	0	
TMC2	117532	broad.mit.edu	37	20	2605002	2605002	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:2605002G>A	uc002wgf.1	+	17	2281	c.2266G>A	c.(2266-2268)GCC>ACC	p.A756T	TMC2_uc002wgg.1_Missense_Mutation_p.A740T	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	756	Helical; (Potential).					integral to membrane		p.A756T(1)		ovary(3)	3						TGCTTTCCTCGCCAATCCAGG	0.488													44	77					0	0	1	0	0	
FASTKD5	60493	broad.mit.edu	37	20	3127807	3127807	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:3127807T>G	uc002whz.2	-	2	2221	c.1910A>C	c.(1909-1911)AAA>ACA	p.K637T	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	637					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						TCCTCTTGCTTTCCCTTTTAG	0.488													31	58					0	0	1	0	0	
SLC4A11	83959	broad.mit.edu	37	20	3211414	3211414	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:3211414G>T	uc002wig.2	-	10	1342	c.1294C>A	c.(1294-1296)CTG>ATG	p.L432M	SLC4A11_uc010zqe.1_Missense_Mutation_p.L459M|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Missense_Mutation_p.L416M	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	432	Helical; (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						GTGGTCAGCAGAATCACCAAT	0.672													21	29					5.45024e-15	6.18484e-15	1	1	0	
C20orf194	25943	broad.mit.edu	37	20	3274887	3274887	+	Silent	SNP	G	A	A	rs61734535		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:3274887G>A	uc002wii.2	-	25	2187	c.2136C>T	c.(2134-2136)TTC>TTT	p.F712F	C20orf194_uc002wij.3_Silent_p.F451F|C20orf194_uc002wik.2_Silent_p.F386F	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	712											0						TGCTGATGGCGAAATGCTGGA	0.438													25	37					0	0	1	0	0	
C20orf194	25943	broad.mit.edu	37	20	3275246	3275246	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:3275246G>A	uc002wii.2	-	24	2099	c.2048C>T	c.(2047-2049)GCC>GTC	p.A683V	C20orf194_uc002wij.3_Missense_Mutation_p.A422V|C20orf194_uc002wik.2_Missense_Mutation_p.A357V	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	683											0						CTGGCTCAGGGCACTGAAGAG	0.483													13	35					0	0	1	0	0	
C20orf194	25943	broad.mit.edu	37	20	3306889	3306889	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:3306889A>C	uc002wii.2	-	13	1194	c.1143T>G	c.(1141-1143)GTT>GTG	p.V381V	C20orf194_uc002wij.3_Silent_p.V120V|C20orf194_uc002wik.2_Silent_p.V55V|C20orf194_uc010gay.1_RNA	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	381											0						TGCCAGCCAAAACAGCCTCAA	0.308													26	61					0	0	1	0	0	
C20orf194	25943	broad.mit.edu	37	20	3340185	3340185	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:3340185G>T	uc002wii.2	-	7	719	c.668C>A	c.(667-669)TCT>TAT	p.S223Y	C20orf194_uc002wik.2_5'UTR|C20orf194_uc010gay.1_RNA	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	223											0						ACTCTCCAGAGACATAGGATC	0.363													30	47					2.80507e-11	3.07208e-11	1	1	0	
SIGLEC1	6614	broad.mit.edu	37	20	3677393	3677393	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:3677393A>G	uc002wja.2	-	10	2523	c.2523T>C	c.(2521-2523)GGT>GGC	p.G841G	SIGLEC1_uc002wiz.3_Silent_p.G841G	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	841	Ig-like C2-type 8.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GGACCTGGGGACCCAGGCTGG	0.637													22	65					0	0	1	0	0	
PRND	23627	broad.mit.edu	37	20	4705395	4705395	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:4705395C>T	uc002wkz.2	+	2	269	c.198C>T	c.(196-198)CTC>CTT	p.L66L		NM_012409	NP_036541	Q9UKY0	PRND_HUMAN	prion-like protein doppel preproprotein	66	Globular.				protein homooligomerization	anchored to membrane|plasma membrane					0						GCCGCAAGCTCGACATTGACT	0.602													20	21					0	0	1	0	0	
CHGB	1114	broad.mit.edu	37	20	5904101	5904101	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:5904101G>T	uc002wmg.2	+	4	1617	c.1311G>T	c.(1309-1311)GAG>GAT	p.E437D	CHGB_uc010zqz.1_Missense_Mutation_p.E120D	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	437						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						CCAGAGAAGAGAAAAGGTTCT	0.542													39	91					1.58521e-26	1.91845e-26	1	1	0	
MCM8	84515	broad.mit.edu	37	20	5943947	5943947	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:5943947T>C	uc002wmi.2	+	8	1194	c.817T>C	c.(817-819)TCA>CCA	p.S273P	MCM8_uc002wmj.2_Missense_Mutation_p.S273P|MCM8_uc002wmk.2_Missense_Mutation_p.S273P|MCM8_uc002wml.2_Missense_Mutation_p.S273P|MCM8_uc010gbp.2_Missense_Mutation_p.S273P	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	273					cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						TCGAGGCAGGTCATTTACTGC	0.413													32	51					0	0	1	0	0	
PLCB1	23236	broad.mit.edu	37	20	8707987	8707987	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:8707987C>T	uc002wnb.2	+	17	1713	c.1710C>T	c.(1708-1710)TTC>TTT	p.F570F	PLCB1_uc010zrb.1_Silent_p.F469F|PLCB1_uc002wna.2_Silent_p.F570F|PLCB1_uc002wnc.1_Silent_p.F469F|PLCB1_uc002wnd.1_Silent_p.F147F	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	570	PI-PLC Y-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGTCTTCCTTCGTGGAAACCA	0.353													13	35					0	0	1	0	0	
PLCB1	23236	broad.mit.edu	37	20	8862337	8862337	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:8862337C>T	uc002wnb.2	+	32	3495	c.3492C>T	c.(3490-3492)TTC>TTT	p.F1164F	PLCB1_uc002wna.2_3'UTR	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1164					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TTTTGGAATTCGTGCAGGAAG	0.493													93	155					0	0	1	0	0	
PLCB4	5332	broad.mit.edu	37	20	9370547	9370547	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:9370547G>A	uc002wnf.2	+	15	1316	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K	PLCB4_uc010gbw.1_Missense_Mutation_p.E394K|PLCB4_uc010gbx.2_Missense_Mutation_p.E394K|PLCB4_uc002wne.2_Missense_Mutation_p.E394K|PLCB4_uc002wnh.2_Missense_Mutation_p.E241K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	394	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AGCCATCAAGGAAACTGCATT	0.333													20	59					0	0	1	0	0	
PLCB4	5332	broad.mit.edu	37	20	9402103	9402103	+	Missense_Mutation	SNP	C	T	T	rs148851937		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:9402103C>T	uc002wnf.2	+	25	2414	c.2278C>T	c.(2278-2280)CGG>TGG	p.R760W	PLCB4_uc010gbw.1_Missense_Mutation_p.R760W|PLCB4_uc010gbx.2_Missense_Mutation_p.R772W|PLCB4_uc002wne.2_Missense_Mutation_p.R760W|PLCB4_uc002wnh.2_Missense_Mutation_p.R607W	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	760	C2.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity	p.R760W(1)		skin(11)|ovary(3)|pancreas(1)	15						ATTTGTATTTCGGAAGGTAGG	0.423													28	64					0	0	1	0	0	
ANKRD5	63926	broad.mit.edu	37	20	10025099	10025099	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:10025099C>T	uc002wno.2	+	5	997	c.604C>T	c.(604-606)CGA>TGA	p.R202*	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Nonsense_Mutation_p.R202*|ANKRD5_uc010gbz.2_Nonsense_Mutation_p.R13*	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	202	ANK 2.						calcium ion binding			ovary(1)|breast(1)	2						GGAAATAGTTCGAGGCATATT	0.438													52	116					0	0	1	0	0	
JAG1	182	broad.mit.edu	37	20	10626682	10626682	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:10626682C>T	uc002wnw.2	-	15	2452	c.1936G>A	c.(1936-1938)GAT>AAT	p.D646N	JAG1_uc010gcd.1_Missense_Mutation_p.D204N	NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	646	Extracellular (Potential).|EGF-like 11; calcium-binding (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						TTGACACCATCGATGCAAGTG	0.468									Alagille_Syndrome				54	94					0	0	1	0	0	
TASP1	55617	broad.mit.edu	37	20	13561609	13561609	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:13561609C>A	uc002woi.2	-	6	540	c.423G>T	c.(421-423)TCG>TCT	p.S141S	TASP1_uc010zri.1_Intron|TASP1_uc002woh.2_Silent_p.S118S|TASP1_uc010zrj.1_RNA	NM_017714	NP_060184	Q9H6P5	TASP1_HUMAN	taspase 1 precursor	141					asparagine catabolic process via L-aspartate|positive regulation of transcription, DNA-dependent|protein maturation		threonine-type endopeptidase activity				0						TGTTGGCAACCGAGACTGGGT	0.418													28	59					7.38237e-10	7.96475e-10	1	1	0	
SNRPB2	6629	broad.mit.edu	37	20	16717945	16717945	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:16717945A>C	uc002wph.1	+	4	493	c.277A>C	c.(277-279)AAA>CAA	p.K93Q	SNRPB2_uc002wpi.1_Missense_Mutation_p.K93Q	NM_003092	NP_003083	P08579	RU2B_HUMAN	small nuclear ribonucleoprotein polypeptide B''	93						catalytic step 2 spliceosome|nucleoplasm|U2 snRNP	nucleotide binding|protein binding|RNA binding			large_intestine(1)	1						TATAATATCAAAAATGCGTGG	0.318													16	28					0	0	1	0	0	
CSRP2BP	57325	broad.mit.edu	37	20	18142616	18142616	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:18142616G>A	uc002wqj.2	+	6	1457	c.835G>A	c.(835-837)GCT>ACT	p.A279T	CSRP2BP_uc002wqk.2_Missense_Mutation_p.A151T|CSRP2BP_uc010zru.1_Missense_Mutation_p.A150T	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	279					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						GAAGGAGGCCGCTGGCTTTCT	0.478													83	163					0	0	1	0	0	
POLR3F	10621	broad.mit.edu	37	20	18461089	18461089	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:18461089G>T	uc002wqv.2	+	7	735	c.617G>T	c.(616-618)AGA>ATA	p.R206I	POLR3F_uc002wqw.2_RNA|POLR3F_uc002wqx.2_Missense_Mutation_p.R165I	NM_006466	NP_006457	Q9H1D9	RPC6_HUMAN	DNA-directed RNA polymerase III 39 kDa	206					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|regulation of transcription from RNA polymerase III promoter|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|protein binding				0						ATGATACAAAGAAATAGTTCA	0.318													19	38					1.96292e-10	2.12899e-10	1	1	0	
NAA20	51126	broad.mit.edu	37	20	20007509	20007509	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:20007509G>A	uc002wrp.2	+	4	355	c.251G>A	c.(250-252)CGA>CAA	p.R84Q	NAA20_uc002wrq.2_Missense_Mutation_p.R84Q|NAA20_uc002wrr.2_Missense_Mutation_p.R72Q	NM_016100	NP_057184	P61599	NAA20_HUMAN	N-acetyltransferase 5 isoform a	84	N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity				0						CCAGAATTTCGACGCCTTGGT	0.448													49	122					0	0	1	0	0	
NAA20	51126	broad.mit.edu	37	20	20013155	20013155	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:20013155G>A	uc002wrp.2	+	5	413	c.309G>A	c.(307-309)AAG>AAA	p.K103K	NAA20_uc002wrq.2_Intron|NAA20_uc002wrr.2_Silent_p.K91K	NM_016100	NP_057184	P61599	NAA20_HUMAN	N-acetyltransferase 5 isoform a	103	N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity				0						TTTAAAGAAAGGGTGGATTTT	0.323													19	34					0	0	1	0	0	
C20orf26	26074	broad.mit.edu	37	20	20140041	20140041	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:20140041G>A	uc002wru.2	+	10	1055	c.979G>A	c.(979-981)GAG>AAG	p.E327K	C20orf26_uc010gcw.1_Missense_Mutation_p.E281K|C20orf26_uc010zse.1_Missense_Mutation_p.E327K|C20orf26_uc010zsf.1_Missense_Mutation_p.E327K	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	327										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		AGCTGCATCCGAGGAAGCTTT	0.403													38	83					0	0	1	0	0	
C20orf26	26074	broad.mit.edu	37	20	20322485	20322485	+	Missense_Mutation	SNP	G	A	A	rs147197543		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:20322485G>A	uc002wru.2	+	26	3509	c.3433G>A	c.(3433-3435)GAG>AAG	p.E1145K	C20orf26_uc002wrw.2_RNA	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	1145										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CTACTTCACCGAGCCGTGGTG	0.433													14	34					0	0	1	0	0	
RALGAPA2	57186	broad.mit.edu	37	20	20493273	20493273	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:20493273G>A	uc002wrz.2	-	32	4883	c.4740C>T	c.(4738-4740)TTC>TTT	p.F1580F	RALGAPA2_uc010gcx.2_Silent_p.F1284F|RALGAPA2_uc010zsg.1_Silent_p.F1028F|RALGAPA2_uc002wsa.1_Silent_p.F352F	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1580					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TTGCAGAATCGAAGTTATGAC	0.468													20	34					0	0	1	0	0	
CD93	22918	broad.mit.edu	37	20	23064997	23064997	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:23064997C>T	uc002wsv.2	-	1	1981	c.1833G>A	c.(1831-1833)GCG>GCA	p.A611A		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	611	Cytoplasmic (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CCTCCCTCTTCGCTCTCCGCT	0.572													59	127					0	0	1	0	0	
CST9	128822	broad.mit.edu	37	20	23584228	23584228	+	Silent	SNP	G	A	A	rs141512970	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:23584228G>A	uc002wtl.2	-	2	508	c.399C>T	c.(397-399)GTC>GTT	p.V133V		NM_001008693	NP_001008693	Q5W186	CST9_HUMAN	cystatin 9 precursor	133						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Colorectal(13;0.0993)					CACAGCTGTGGACCTGAGGAA	0.522													46	85					0	0	1	0	0	
CST3	1471	broad.mit.edu	37	20	23614628	23614628	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:23614628G>A	uc002wtm.2	-	3	441	c.366C>T	c.(364-366)TTC>TTT	p.F122F	CST3_uc002wtn.1_Silent_p.F122F	NM_000099	NP_000090	P01034	CYTC_HUMAN	cystatin C precursor	122					defense response|fibril organization|negative regulation of blood vessel remodeling|negative regulation of collagen catabolic process|negative regulation of elastin catabolic process|negative regulation of extracellular matrix disassembly	extracellular space	beta-amyloid binding|cysteine-type endopeptidase inhibitor activity|protease binding			ovary(1)	1	Lung NSC(19;0.0789)|Colorectal(13;0.0993)|all_lung(19;0.169)					GGAAAGAGCAGAATGCTTTCT	0.542													27	38					0	0	1	0	0	
PYGB	5834	broad.mit.edu	37	20	25258996	25258996	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:25258996C>T	uc002wup.2	+	8	1006	c.897C>T	c.(895-897)TTC>TTT	p.F299F		NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	299					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	AGGAGTACTTCGTGGTGGCCG	0.612													19	28					0	0	1	0	0	
HM13	81502	broad.mit.edu	37	20	30137889	30137889	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:30137889T>G	uc002wwe.2	+	7	803	c.689T>G	c.(688-690)GTG>GGG	p.V230G	HM13_uc002wwc.2_Missense_Mutation_p.V230G|HM13_uc002wwd.2_Missense_Mutation_p.V230G|HM13_uc002wwf.2_Missense_Mutation_p.V106G|HM13_uc010gdu.2_Missense_Mutation_p.V106G	NM_030789	NP_110416	Q8TCT9	HM13_HUMAN	minor histocompatibility antigen 13 isoform 1	230	Helical; (Potential).				membrane protein proteolysis	cell surface|endoplasmic reticulum membrane|integral to membrane|plasma membrane	aspartic-type endopeptidase activity|protein binding			breast(1)	1	all_cancers(5;3.44e-05)|Lung NSC(7;4.38e-06)|all_lung(7;7.65e-06)|all_hematologic(12;0.158)|Ovarian(7;0.198)		all cancers(5;0.000479)|Colorectal(19;0.00202)|COAD - Colon adenocarcinoma(19;0.0264)			AATGTGATGGTGACAGTGGCC	0.567													74	159					0	0	1	0	0	
TPX2	22974	broad.mit.edu	37	20	30366672	30366672	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:30366672G>T	uc002wwp.1	+	10	1637	c.939G>T	c.(937-939)AAG>AAT	p.K313N	TPX2_uc010gdv.1_Missense_Mutation_p.K313N	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	313					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			CCCAAGGAAAGAAAAGAACAT	0.418													47	89					1.03325e-14	1.16975e-14	1	1	0	
DUSP15	128853	broad.mit.edu	37	20	30452790	30452790	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:30452790G>A	uc002wwu.1	-	4	222	c.145C>T	c.(145-147)CGC>TGC	p.R49C	DUSP15_uc002wwv.1_5'UTR|DUSP15_uc002www.1_5'UTR|DUSP15_uc002wwx.1_Missense_Mutation_p.R52C			Q9H1R2	DUS15_HUMAN	RecName: Full=Dual specificity protein phosphatase 15;          EC=3.1.3.48;          EC=3.1.3.16; AltName: Full=Vaccinia virus VH1-related dual-specific protein phosphatase Y; AltName: Full=VH1-related member Y;	49						cytoplasm|plasma membrane	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			ACCGGGATGCGAAGGTAGGTG	0.572													30	41					0	0	1	0	0	
TTLL9	164395	broad.mit.edu	37	20	30510818	30510818	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:30510818T>C	uc010gdx.1	+	8	879	c.626T>C	c.(625-627)GTG>GCG	p.V209A	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_RNA|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Missense_Mutation_p.V96A|TTLL9_uc010ztp.1_RNA|TTLL9_uc010ztq.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	209	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GAGAACTATGTGGCTCAGCGT	0.368													42	59					0	0	1	0	0	
TTLL9	164395	broad.mit.edu	37	20	30512815	30512815	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:30512815G>A	uc010gdx.1	+	9	921	c.668G>A	c.(667-669)CGC>CAC	p.R223H	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_RNA|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Missense_Mutation_p.R110H|TTLL9_uc010ztp.1_RNA|TTLL9_uc010ztq.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	223	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CTGACAGGCCGCAAGTTTGAC	0.343													15	24					0	0	1	0	0	
TTLL9	164395	broad.mit.edu	37	20	30522582	30522582	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:30522582G>A	uc010gdx.1	+	12	1148	c.895G>A	c.(895-897)GAC>AAC	p.D299N	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_Intron|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Missense_Mutation_p.D201N|TTLL9_uc010ztp.1_RNA|TTLL9_uc010ztq.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	299	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CAGGGACATCGACAACATCTT	0.587													38	79					0	0	1	0	0	
TTLL9	164395	broad.mit.edu	37	20	30526969	30526969	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:30526969C>T	uc010gdx.1	+	14	1396	c.1143C>T	c.(1141-1143)GTC>GTT	p.V381V	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_Intron|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Silent_p.V283V|TTLL9_uc010ztp.1_Intron|TTLL9_uc010ztq.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	381					protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			AGAAGCGAGTCGGGGGCTTTG	0.577													24	62					0	0	1	0	0	
PDRG1	81572	broad.mit.edu	37	20	30538170	30538170	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:30538170T>G	uc002wxd.2	-	2	227	c.108A>C	c.(106-108)AAA>AAC	p.K36N		NM_030815	NP_110442	Q9NUG6	PDRG1_HUMAN	p53 and DNA damage-regulated protein	36					protein folding	prefoldin complex	unfolded protein binding				0			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			TCTGATTCCTTTTAGTGTCCA	0.527													21	57					0	0	1	0	0	
KIF3B	9371	broad.mit.edu	37	20	30919089	30919089	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:30919089T>G	uc002wxq.2	+	9	2378	c.2211T>G	c.(2209-2211)CTT>CTG	p.L737L	KIF3B_uc010ztw.1_Silent_p.L675L	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	737	Globular.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CATCTCAGCTTTATCCACAGT	0.498													18	61					0	0	1	0	0	
COMMD7	149951	broad.mit.edu	37	20	31292274	31292274	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:31292274C>T	uc002wya.3	-	7	1062	c.445G>A	c.(445-447)GAA>AAA	p.E149K	COMMD7_uc010ged.2_Missense_Mutation_p.E148K|COMMD7_uc002wyb.2_Missense_Mutation_p.E149K	NM_053041	NP_444269	Q86VX2	COMD7_HUMAN	COMM domain containing 7 isoform 1	149	COMM.				negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|tumor necrosis factor-mediated signaling pathway		NF-kappaB binding			breast(1)	1						TTCTCCAATTCGCTGCTCCCA	0.368													5	12					0	0	1	0	0	
C20orf185	359710	broad.mit.edu	37	20	31652621	31652621	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:31652621C>T	uc002wym.1	+	8	894	c.894C>T	c.(892-894)GGC>GGT	p.G298G		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	298					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						AGACCAACGGCGCCCTCGACA	0.617													18	46					0	0	1	0	0	
C20orf185	359710	broad.mit.edu	37	20	31656729	31656729	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:31656729C>T	uc002wym.1	+	10	1099	c.1099C>T	c.(1099-1101)CTG>TTG	p.L367L		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	367					innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						CATCCATGTGCTGTTCTATGT	0.592													22	45					0	0	1	0	0	
C20orf70	140683	broad.mit.edu	37	20	31756955	31756955	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:31756955C>A	uc002wyo.1	+	2	75	c.4C>A	c.(4-6)CTT>ATT	p.L2I		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	2						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						ACAAAAGATGCTTCAGCTTTG	0.473													63	113					2.60599e-31	3.19155e-31	1	1	0	
C20orf70	140683	broad.mit.edu	37	20	31760789	31760789	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:31760789C>T	uc002wyo.1	+	3	280	c.209C>T	c.(208-210)GCT>GTT	p.A70V		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	70						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						AAATCCAGTGCTTGGCAACTG	0.433													17	45					0	0	1	0	0	
PLUNC	51297	broad.mit.edu	37	20	31829266	31829266	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:31829266T>G	uc002wyv.2	+	6	727	c.657T>G	c.(655-657)GTT>GTG	p.V219V	PLUNC_uc002wyt.3_Silent_p.V219V|PLUNC_uc002wyu.3_Silent_p.V219V	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	219					innate immune response	extracellular region	lipid binding				0						CTGAGTTGGTTCAGGGCAACG	0.512													85	127					0	0	1	0	0	
C20orf114	92747	broad.mit.edu	37	20	31879790	31879790	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:31879790A>G	uc002wyw.1	+	6	754	c.593A>G	c.(592-594)AAC>AGC	p.N198S	C20orf114_uc010gej.1_Missense_Mutation_p.N198S	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	198						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						CTAGTGAAAAACCAGGTGAGT	0.562											OREG0025868	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	47					0	0	1	0	0	
C20orf134	170487	broad.mit.edu	37	20	32255772	32255772	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:32255772A>G	uc002wzt.2	+	1	1469	c.469A>G	c.(469-471)ACA>GCA	p.T157A	NECAB3_uc002wzm.3_Intron|NECAB3_uc002wzn.3_Intron|NECAB3_uc002wzo.3_Intron|NECAB3_uc002wzp.3_Intron|NECAB3_uc002wzq.3_Intron|NECAB3_uc002wzr.3_Intron|NECAB3_uc010geo.2_Intron	NM_001024675	NP_001019846	Q5JWF8	CT134_HUMAN	hypothetical protein LOC170487	157										pancreas(1)	1						AACGCTGCGGACACGCCTGGC	0.706													3	6					0	0	1	0	0	
ZNF341	84905	broad.mit.edu	37	20	32371624	32371624	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:32371624C>A	uc002wzy.2	+	12	1826	c.1806C>A	c.(1804-1806)TTC>TTA	p.F602L	ZNF341_uc002wzx.2_Missense_Mutation_p.F595L|ZNF341_uc010geq.2_Missense_Mutation_p.F512L|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	602	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GCAAGAAGTTCTTCCGGCGGG	0.532													35	58					6.53348e-20	7.6944e-20	1	1	0	
RALY	22913	broad.mit.edu	37	20	32660006	32660006	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:32660006C>T	uc002xab.2	+	3	424	c.126C>T	c.(124-126)TTC>TTT	p.F42F	RALY_uc010zui.1_Silent_p.F42F|RALY_uc002xac.2_Silent_p.F42F|RALY_uc002xad.2_RNA|RALY_uc002xae.1_Silent_p.F42F	NM_016732	NP_057951	Q9UKM9	RALY_HUMAN	RNA binding protein (autoantigenic,	42	RRM.					catalytic step 2 spliceosome|heterogeneous nuclear ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(1)	1						AGACCATCTTCTCTAAGTATG	0.512													15	73					0	0	1	0	0	
EIF2S2	8894	broad.mit.edu	37	20	32677684	32677684	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:32677684C>T	uc002xaf.2	-	9	1023	c.854G>A	c.(853-855)CGA>CAA	p.R285Q	EIF2S2_uc002xag.2_Missense_Mutation_p.R282Q|EIF2S2_uc010ges.2_Missense_Mutation_p.R225Q	NM_003908	NP_003899	P20042	IF2B_HUMAN	eukaryotic translation initiation factor 2 beta	285	C4-type (Potential).					cytosol|eukaryotic translation initiation factor 2 complex	metal ion binding|protein binding|translation initiation factor activity			large_intestine(1)	1						GTCCGGTGATCGGCATGTGTG	0.448													36	86					0	0	1	0	0	
GSS	2937	broad.mit.edu	37	20	33516680	33516680	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:33516680C>T	uc002xbg.2	-	13	1456	c.1376G>A	c.(1375-1377)GGT>GAT	p.G459D	GSS_uc010zun.1_Missense_Mutation_p.G331D|GSS_uc010zuo.1_Missense_Mutation_p.G348D|GSS_uc010zup.1_Missense_Mutation_p.G390D|GSS_uc002xbh.2_RNA	NM_000178	NP_000169	P48637	GSHB_HUMAN	glutathione synthetase	459					nervous system development|response to oxidative stress|xenobiotic metabolic process	cytosol	ATP binding|glutathione binding|glutathione synthase activity|magnesium ion binding|protein homodimerization activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(18;0.035)		Glutathione(DB00143)|Glycine(DB00145)|L-Cysteine(DB00151)	TGCCACACCACCATCTGCATG	0.542													30	40					0	0	1	0	0	
EDEM2	55741	broad.mit.edu	37	20	33703611	33703611	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:33703611G>A	uc002xbo.2	-	11	1462	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F	EDEM2_uc010zus.1_Silent_p.F233F|EDEM2_uc002xbq.2_Silent_p.F417F|EDEM2_uc010zut.1_Silent_p.F413F|EDEM2_uc002xbp.2_Silent_p.F302F|EDEM2_uc002xbn.2_Silent_p.F302F|EDEM2_uc002xbr.2_RNA|EDEM2_uc010zuu.1_Silent_p.F178F	NM_018217	NP_060687	Q9BV94	EDEM2_HUMAN	ER degradation enhancer, mannosidase alpha-like	454					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00936)			TCACCGCGTCGAAGGTGGACC	0.577													26	49					0	0	1	0	0	
EIF6	3692	broad.mit.edu	37	20	33868540	33868540	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:33868540G>A	uc002xbv.1	-	3	502	c.286C>T	c.(286-288)CGG>TGG	p.R96W	EDEM2_uc010zuv.1_5'Flank|EIF6_uc002xbx.1_Missense_Mutation_p.R96W|EIF6_uc002xbz.1_Intron|EIF6_uc002xby.1_Intron	NM_181468	NP_852133	P56537	IF6_HUMAN	eukaryotic translation initiation factor 6	96					mature ribosome assembly	cytoplasm|nucleolus	protein binding|ribosome binding|translation initiation factor activity			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(18;0.00252)			TCCTCCACCCGCCTAATCTGC	0.587													15	21					0	0	1	0	0	
CEP250	11190	broad.mit.edu	37	20	34054861	34054861	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:34054861G>A	uc002xcm.2	+	9	1234	c.563G>A	c.(562-564)CGA>CAA	p.R188Q	CEP250_uc010zve.1_5'UTR|CEP250_uc010gfe.1_RNA|CEP250_uc010zvd.1_RNA|CEP250_uc002xco.2_5'UTR	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	188					centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			GTGACATTCCGACGCCACTTC	0.532													36	50					0	0	1	0	0	
CEP250	11190	broad.mit.edu	37	20	34099337	34099337	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:34099337C>T	uc002xcm.2	+	36	7882	c.7211C>T	c.(7210-7212)GCC>GTC	p.A2404V	CEP250_uc010zve.1_Missense_Mutation_p.A1772V	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	2404					centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			GCCCCTGAGGCCACTGTCCTG	0.637													18	43					0	0	1	0	0	
SPAG4	6676	broad.mit.edu	37	20	34206049	34206049	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:34206049G>A	uc002xdb.1	+	5	696	c.579G>A	c.(577-579)GAG>GAA	p.E193E	SPAG4_uc010zvi.1_Silent_p.E116E	NM_003116	NP_003107	Q9NPE6	SPAG4_HUMAN	sperm associated antigen 4	193					spermatogenesis	cilium|flagellar axoneme|integral to membrane	structural molecule activity				0	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			CTCCTTTGGAGAATGTGAGTT	0.582													11	25					0	0	1	0	0	
CPNE1	8904	broad.mit.edu	37	20	34220780	34220780	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:34220780G>A	uc002xdf.2	-	4	429	c.66C>T	c.(64-66)ATC>ATT	p.I22I	CPNE1_uc002xdc.2_5'Flank|CPNE1_uc010zvj.1_Silent_p.I27I|CPNE1_uc002xde.2_Silent_p.I22I|CPNE1_uc002xdg.2_Silent_p.I22I|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Silent_p.I22I|CPNE1_uc002xdi.2_Silent_p.I22I|CPNE1_uc002xdj.2_Silent_p.I22I|CPNE1_uc002xdk.2_Silent_p.I22I|CPNE1_uc002xdl.2_Silent_p.I22I|CPNE1_uc002xdm.2_Silent_p.I22I|CPNE1_uc010gfk.1_Silent_p.I22I|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_RNA	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	22	C2 1.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			ACTTGGAGCCGATGTCCTTGT	0.567													34	64					0	0	1	0	0	
RBM12	10137	broad.mit.edu	37	20	34241148	34241148	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:34241148A>G	uc002xdq.2	-	3	2329	c.2097T>C	c.(2095-2097)AGT>AGC	p.S699S	CPNE1_uc010zvj.1_Intron|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Silent_p.S699S|RBM12_uc002xds.2_Silent_p.S699S	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	699	Gly-rich.|Pro-rich.					nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CACCTCCTGCACTAGGTATTC	0.532													36	89					0	0	1	0	0	
C20orf117	140710	broad.mit.edu	37	20	35437145	35437145	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:35437145A>C	uc002xgd.1	-	8	2198	c.1871T>G	c.(1870-1872)CTG>CGG	p.L624R	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	624											0		Myeloproliferative disorder(115;0.00874)				GTCCTCCTTCAGCTGCCGGGG	0.647											OREG0025909	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	7					0	0	1	0	0	
SAMHD1	25939	broad.mit.edu	37	20	35539642	35539642	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:35539642C>A	uc002xgh.1	-	11	1379	c.1249G>T	c.(1249-1251)GAA>TAA	p.E417*		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	417					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				GTATAGGCTTCCATGTCGTCA	0.383													57	71					3.37043e-27	4.08864e-27	1	1	0	
KIAA0406	9675	broad.mit.edu	37	20	36641180	36641180	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:36641180T>G	uc002xhl.2	-	3	1248	c.1039A>C	c.(1039-1041)ATC>CTC	p.I347L	KIAA0406_uc002xhm.2_Missense_Mutation_p.I347L	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	347							binding				0		Myeloproliferative disorder(115;0.00874)				TGGGCTTGGATTTCAGGACTC	0.463													72	111					0	0	1	0	0	
TGM2	7052	broad.mit.edu	37	20	36758717	36758717	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:36758717C>T	uc002xhr.2	-	13	2068	c.1968G>A	c.(1966-1968)CCG>CCA	p.P656P	TGM2_uc002xhq.2_Silent_p.P257P|TGM2_uc010zvx.1_Silent_p.P575P|TGM2_uc010zvy.1_Silent_p.P596P	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	656					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	CCATGTGGAGCGGCAGCAGGT	0.622													3	10					0	0	1	0	0	
BPI	671	broad.mit.edu	37	20	36932692	36932692	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:36932692G>A	uc002xib.2	+	1	141	c.79G>A	c.(79-81)GCC>ACC	p.A27T		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	27					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				CATAGGCACCGCCGTGACAGC	0.642													33	55					0	0	1	0	0	
RALGAPB	57148	broad.mit.edu	37	20	37174905	37174905	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:37174905G>A	uc002xiw.2	+	19	2991	c.2734G>A	c.(2734-2736)GCA>ACA	p.A912T	RALGAPB_uc002xix.2_Missense_Mutation_p.A908T|RALGAPB_uc002xiy.1_Missense_Mutation_p.A912T|RALGAPB_uc002xiz.2_Missense_Mutation_p.A690T|RALGAPB_uc002xja.1_Missense_Mutation_p.A639T	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	912					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						GTTGCTCGGCGCATTTCCTTC	0.423													44	58					0	0	1	0	0	
ACTR5	79913	broad.mit.edu	37	20	37383680	37383680	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:37383680G>A	uc002xjd.2	+	4	881	c.856G>A	c.(856-858)GGC>AGC	p.G286S		NM_024855	NP_079131	Q9H9F9	ARP5_HUMAN	ARP5 actin-related protein 5 homolog	286					DNA recombination|double-strand break repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent|UV-damage excision repair	cytoplasm|Ino80 complex	ATP binding|protein binding				0		Myeloproliferative disorder(115;0.00878)				CAAGCTCCTGGGCAGCACTCT	0.512													24	45					0	0	1	0	0	
DHX35	60625	broad.mit.edu	37	20	37632517	37632517	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:37632517A>C	uc002xjh.2	+	11	989	c.978A>C	c.(976-978)AAA>AAC	p.K326N	DHX35_uc010zwa.1_Missense_Mutation_p.K171N|DHX35_uc010zwb.1_Missense_Mutation_p.K171N|DHX35_uc010zwc.1_Missense_Mutation_p.K295N	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	326	Helicase C-terminal.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AGCAAATGAAAGTGTTTGAAA	0.498													65	102					0	0	1	0	0	
DHX35	60625	broad.mit.edu	37	20	37647465	37647465	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:37647465G>A	uc002xjh.2	+	15	1432	c.1421G>A	c.(1420-1422)CGC>CAC	p.R474H	DHX35_uc010zwa.1_Missense_Mutation_p.R319H|DHX35_uc010zwb.1_Missense_Mutation_p.R319H|DHX35_uc010zwc.1_Missense_Mutation_p.R443H	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	474						catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AAAGACTGTCGCCTAACTGAA	0.443													74	119					0	0	1	0	0	
DHX35	60625	broad.mit.edu	37	20	37652368	37652368	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:37652368C>T	uc002xjh.2	+	17	1640	c.1629C>T	c.(1627-1629)GGC>GGT	p.G543G	DHX35_uc010zwa.1_Silent_p.G388G|DHX35_uc010zwb.1_Silent_p.G388G|DHX35_uc010zwc.1_Silent_p.G512G	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	543						catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				TGGAGGAGGGCGACCACCTCA	0.388													26	47					0	0	1	0	0	
TOP1	7150	broad.mit.edu	37	20	39709828	39709828	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:39709828T>A	uc002xjl.2	+	7	701	c.455T>A	c.(454-456)ATT>AAT	p.I152N	TOP1_uc010gge.1_RNA	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	152	Lys-rich.				DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	CCTAAGAAAATTAAAACAGAA	0.368			T	NUP98	AML*								22	46					0	0	1	0	0	
PLCG1	5335	broad.mit.edu	37	20	39793708	39793708	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:39793708A>C	uc002xjp.1	+	13	1474	c.1353A>C	c.(1351-1353)TCA>TCC	p.S451S	PLCG1_uc002xjo.1_Silent_p.S451S|PLCG1_uc010zwe.1_Silent_p.S77S|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	451	PI-PLC X-box.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				GGCTCCCCTCACCCAACCAGC	0.592													22	34					0	0	1	0	0	
ZHX3	23051	broad.mit.edu	37	20	39833469	39833469	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:39833469C>T	uc002xjs.1	-	3	466	c.88G>A	c.(88-90)GCT>ACT	p.A30T	ZHX3_uc002xjq.1_Missense_Mutation_p.A30T|ZHX3_uc002xjr.1_Missense_Mutation_p.A30T|ZHX3_uc002xjt.1_Missense_Mutation_p.A30T|ZHX3_uc002xju.1_Missense_Mutation_p.A30T|ZHX3_uc002xjv.1_Missense_Mutation_p.A30T|ZHX3_uc002xjw.1_Missense_Mutation_p.A30T|ZHX3_uc010ggg.1_Missense_Mutation_p.A30T	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	30	Required for nuclear localization.				negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				AAGGTCTCAGCGGGCTGGGCC	0.577													24	48					0	0	1	0	0	
LPIN3	64900	broad.mit.edu	37	20	39978806	39978806	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:39978806G>A	uc002xjx.2	+	7	962	c.871G>A	c.(871-873)GTG>ATG	p.V291M	LPIN3_uc010ggh.2_Missense_Mutation_p.V292M|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	291					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				GGCTGGCGGCGTGGACCCTTT	0.642													12	26					0	0	1	0	0	
LPIN3	64900	broad.mit.edu	37	20	39986541	39986541	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:39986541T>G	uc002xjx.2	+	17	2150	c.2059T>G	c.(2059-2061)TAC>GAC	p.Y687D	LPIN3_uc010ggh.2_Missense_Mutation_p.Y688D|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	687	C-LIP.				fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				CAAGTTCCTGTACTGCTCGGC	0.622													27	51					0	0	1	0	0	
EMILIN3	90187	broad.mit.edu	37	20	39991292	39991292	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:39991292C>T	uc002xjy.1	-	4	1141	c.917G>A	c.(916-918)CGA>CAA	p.R306Q		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	306						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GTGCAGCCGTCGGTCCACGTA	0.677													12	12					0	0	1	0	0	
PTPRT	11122	broad.mit.edu	37	20	40713337	40713337	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:40713337G>A	uc002xkg.2	-	29	4305	c.4121C>T	c.(4120-4122)ACT>ATT	p.T1374I	PTPRT_uc010ggj.2_Missense_Mutation_p.T1393I|PTPRT_uc010ggi.2_Missense_Mutation_p.T577I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1374	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTGGACCACAGTACGTCCCTC	0.607													8	28					0	0	1	0	0	
PTPRT	11122	broad.mit.edu	37	20	40911144	40911144	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:40911144G>A	uc002xkg.2	-	13	2345	c.2161C>T	c.(2161-2163)CGT>TGT	p.R721C	PTPRT_uc010ggj.2_Missense_Mutation_p.R721C	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	721	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTAGCCAGACGAACACAGTTG	0.348													31	79					0	0	1	0	0	
PTPRT	11122	broad.mit.edu	37	20	41306583	41306583	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:41306583C>T	uc002xkg.2	-	7	1260	c.1076G>A	c.(1075-1077)CGA>CAA	p.R359Q	PTPRT_uc010ggj.2_Missense_Mutation_p.R359Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	359	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GAGGAGCACTCGGATCTCATA	0.567													57	90					0	0	1	0	0	
MYBL2	4605	broad.mit.edu	37	20	42331534	42331534	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:42331534G>A	uc002xlb.1	+	8	1571	c.1356G>A	c.(1354-1356)TCG>TCA	p.S452S	MYBL2_uc010zwj.1_Silent_p.S428S|MYBL2_uc002xla.1_Silent_p.S452S	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	452						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TGCCCTTCTCGCCCTCCCAGG	0.428													15	48					0	0	1	0	0	
TOX2	84969	broad.mit.edu	37	20	42680169	42680169	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:42680169C>T	uc002xlf.3	+	4	679	c.662C>T	c.(661-663)TCG>TTG	p.S221L	TOX2_uc010ggo.2_Missense_Mutation_p.S212L|TOX2_uc002xle.3_Missense_Mutation_p.S170L|TOX2_uc010ggp.2_Missense_Mutation_p.S170L|TOX2_uc002xlg.2_Missense_Mutation_p.S170L|TOX2_uc010zwk.1_Missense_Mutation_p.S90L	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	221					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GAAGAGGAGTCGGAAGTGCAT	0.632													14	32					0	0	1	0	0	
HNF4A	3172	broad.mit.edu	37	20	43057088	43057088	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:43057088G>A	uc002xma.2	+	9	1332	c.1243G>A	c.(1243-1245)GGA>AGA	p.G415R	HNF4A_uc002xlu.2_Missense_Mutation_p.G393R|HNF4A_uc002xlv.2_Missense_Mutation_p.G393R|HNF4A_uc002xlz.2_Missense_Mutation_p.G415R|HNF4A_uc010ggq.2_Missense_Mutation_p.G408R	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	415					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CCTCAGCAACGGACAGATGTG	0.582													11	34					0	0	1	0	0	
RBPJL	11317	broad.mit.edu	37	20	43940866	43940866	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:43940866C>T	uc002xns.2	+	6	522	c.450C>T	c.(448-450)TTC>TTT	p.F150F	RBPJL_uc002xnt.2_Silent_p.F150F	NM_014276	NP_055091	Q9UBG7	RBPJL_HUMAN	recombining binding protein L	150					signal transduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CCTAGGAATTCGGCTGCGCCA	0.542											OREG0025979	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	39					0	0	1	0	0	
TP53TG5	27296	broad.mit.edu	37	20	44003970	44003970	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:44003970A>C	uc002xny.2	-	4	558	c.477T>G	c.(475-477)GTT>GTG	p.V159V	SYS1_uc002xnw.1_3'UTR|SYS1-DBNDD2_uc002xnx.2_Intron	NM_014477	NP_055292	Q9Y2B4	T53G5_HUMAN	TP53-target gene 5 protein	159					intracellular signal transduction|negative regulation of cell growth	cytoplasm|nucleus				central_nervous_system(1)	1						ATGTCCTTGGAACCTCAGGCT	0.537													12	182					0	0	1	0	0	
WFDC8	90199	broad.mit.edu	37	20	44180804	44180804	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:44180804A>C	uc002xow.2	-	6	666	c.587T>G	c.(586-588)GTC>GGC	p.V196G	WFDC8_uc002xox.2_Missense_Mutation_p.V196G	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	196	WAP 3.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				ACCTTTTTTGACTTTATGGGG	0.413													28	73					0	0	1	0	0	
WFDC10A	140832	broad.mit.edu	37	20	44259601	44259601	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:44259601G>A	uc002xoz.2	+	2	252	c.184G>A	c.(184-186)GCA>ACA	p.A62T	WFDC9_uc002xoy.2_Intron	NM_080753	NP_542791	Q9H1F0	WF10A_HUMAN	WAP four-disulfide core domain 10A precursor	62	WAP.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				AGATTGTCAAGCAAATAACAT	0.463													16	52					0	0	1	0	0	
ZSWIM1	90204	broad.mit.edu	37	20	44512035	44512035	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:44512035C>A	uc010ghi.2	+	2	917	c.804C>A	c.(802-804)TTC>TTA	p.F268L	ZSWIM1_uc010zxh.1_Missense_Mutation_p.F141L	NM_080603	NP_542170	Q9BR11	ZSWM1_HUMAN	zinc finger, SWIM-type containing 1	268							zinc ion binding			skin(1)	1		Myeloproliferative disorder(115;0.028)				TCAGCCAGTTCTTTGGTACCA	0.557													38	75					4.14481e-20	4.8834e-20	1	1	0	
PCIF1	63935	broad.mit.edu	37	20	44569552	44569552	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:44569552G>A	uc002xqs.2	+	6	806	c.492G>A	c.(490-492)CAG>CAA	p.Q164Q		NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	164						nucleus				skin(1)	1						AAGATAAACAGCAGGCAGCTC	0.597													39	89					0	0	1	0	0	
ZNF334	55713	broad.mit.edu	37	20	45129982	45129982	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:45129982G>A	uc002xsc.2	-	5	2180	c.1996C>T	c.(1996-1998)CGC>TGC	p.R666C	ZNF334_uc002xsa.2_Missense_Mutation_p.R689C|ZNF334_uc002xsb.2_Missense_Mutation_p.R628C|ZNF334_uc002xsd.2_Missense_Mutation_p.R628C|ZNF334_uc010ghl.2_Missense_Mutation_p.R665C	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	666	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				GATTTGTGGCGAAATGTTTTC	0.358													47	87					0	0	1	0	0	
ZNF334	55713	broad.mit.edu	37	20	45131024	45131024	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:45131024C>T	uc002xsc.2	-	5	1138	c.954G>A	c.(952-954)GAG>GAA	p.E318E	ZNF334_uc002xsa.2_Silent_p.E341E|ZNF334_uc002xsb.2_Silent_p.E280E|ZNF334_uc002xsd.2_Silent_p.E280E|ZNF334_uc010ghl.2_Silent_p.E317E	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	318					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				CATAGGATTTCTCCCCTCCAT	0.438													59	123					0	0	1	0	0	
SLC2A10	81031	broad.mit.edu	37	20	45354909	45354909	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:45354909G>A	uc002xsl.2	+	2	1331	c.1234G>A	c.(1234-1236)GCA>ACA	p.A412T		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	412	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GCGCTGGACCGCACTGCTGTG	0.632													23	36					0	0	1	0	0	
ZMYND8	23613	broad.mit.edu	37	20	45912344	45912344	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:45912344T>G	uc002xta.1	-	9	1047	c.793A>C	c.(793-795)AAA>CAA	p.K265Q	ZMYND8_uc010ghr.1_Missense_Mutation_p.K240Q|ZMYND8_uc002xst.1_Missense_Mutation_p.K240Q|ZMYND8_uc002xsu.1_Missense_Mutation_p.K265Q|ZMYND8_uc002xsv.1_Missense_Mutation_p.K240Q|ZMYND8_uc002xsw.1_Missense_Mutation_p.K17Q|ZMYND8_uc002xsx.1_Missense_Mutation_p.K17Q|ZMYND8_uc002xsy.1_Missense_Mutation_p.K240Q|ZMYND8_uc002xsz.1_Missense_Mutation_p.K202Q|ZMYND8_uc010zxy.1_Missense_Mutation_p.K292Q|ZMYND8_uc002xtb.1_Missense_Mutation_p.K285Q|ZMYND8_uc002xss.2_Missense_Mutation_p.K265Q|ZMYND8_uc010zxz.1_Missense_Mutation_p.K260Q|ZMYND8_uc002xtc.1_Missense_Mutation_p.K285Q|ZMYND8_uc002xtd.1_Missense_Mutation_p.K260Q|ZMYND8_uc002xte.1_Missense_Mutation_p.K265Q|ZMYND8_uc010zya.1_Missense_Mutation_p.K265Q|ZMYND8_uc002xtf.1_Missense_Mutation_p.K285Q|ZMYND8_uc002xtg.2_Missense_Mutation_p.K259Q|ZMYND8_uc010ghs.1_Missense_Mutation_p.K259Q	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	265							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			TTATCTCGTTTTTGGCAAGCA	0.398													23	35					0	0	1	0	0	
NCOA3	8202	broad.mit.edu	37	20	46264088	46264088	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:46264088A>G	uc002xtk.2	+	11	1340	c.1135A>G	c.(1135-1137)AAC>GAC	p.N379D	NCOA3_uc010ght.1_Missense_Mutation_p.N389D|NCOA3_uc002xtl.2_Missense_Mutation_p.N379D|NCOA3_uc002xtm.2_Missense_Mutation_p.N379D|NCOA3_uc002xtn.2_Missense_Mutation_p.N379D|NCOA3_uc010zyc.1_Missense_Mutation_p.N174D	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	379					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						ATATAGACCAAACCCAAATCC	0.388													21	57					0	0	1	0	0	
ARFGEF2	10564	broad.mit.edu	37	20	47588912	47588912	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:47588912C>A	uc002xtx.3	+	11	1627	c.1475C>A	c.(1474-1476)TCT>TAT	p.S492Y		NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	492					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			TCAACAAGTTCTTTTGAGCAC	0.403													26	49					6.36457e-07	6.65118e-07	1	1	0	
STAU1	6780	broad.mit.edu	37	20	47734395	47734395	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:47734395G>T	uc002xud.2	-	11	1839	c.1428C>A	c.(1426-1428)ATC>ATA	p.I476I	STAU1_uc002xua.2_Silent_p.I395I|STAU1_uc002xub.2_Silent_p.I401I|STAU1_uc002xuc.2_Silent_p.I395I|STAU1_uc002xue.2_Silent_p.I395I|STAU1_uc002xuf.2_Silent_p.I401I|STAU1_uc002xug.2_Silent_p.I476I	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	476						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			GGCCTGAAGAGATGTTATTCT	0.547													55	80					1.32667e-27	1.61056e-27	1	1	0	
STAU1	6780	broad.mit.edu	37	20	47782660	47782660	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:47782660G>A	uc002xud.2	-	3	490	c.79C>T	c.(79-81)CTT>TTT	p.L27F	STAU1_uc002xua.2_Intron|STAU1_uc002xub.2_Intron|STAU1_uc002xuc.2_Intron|STAU1_uc002xue.2_Intron|STAU1_uc002xuf.2_Intron|STAU1_uc002xug.2_Missense_Mutation_p.L27F	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	27						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			TGTGAGAGAAGAGACTGGTTC	0.448													40	86					0	0	1	0	0	
DDX27	55661	broad.mit.edu	37	20	47851485	47851485	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:47851485G>T	uc002xuh.2	+	12	1441	c.1380G>T	c.(1378-1380)AGG>AGT	p.R460S		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	460	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TGTTGACGAGGACCTTCACTG	0.552													14	42					0.000308642	0.000314477	1	1	0	
ZNFX1	57169	broad.mit.edu	37	20	47886956	47886956	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:47886956G>T	uc002xui.2	-	3	1640	c.1393C>A	c.(1393-1395)CTT>ATT	p.L465I		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	465							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GTGGCAAAAAGAAATGTCTCG	0.473													58	117					1.93748e-29	2.36329e-29	1	1	0	
KCNG1	3755	broad.mit.edu	37	20	49626348	49626348	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:49626348G>A	uc002xwa.3	-	2	823	c.528C>T	c.(526-528)TTC>TTT	p.F176F	KCNG1_uc002xwb.2_Silent_p.F176F	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	176	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						CCATCTCCGCGAACTCCTCAA	0.706													30	56					0	0	1	0	0	
KCNG1	3755	broad.mit.edu	37	20	49626531	49626531	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:49626531G>T	uc002xwa.3	-	2	640	c.345C>A	c.(343-345)TTC>TTA	p.F115L	KCNG1_uc002xwb.2_Missense_Mutation_p.F115L	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	115	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GGTCGAAGAAGAACTCGTTGC	0.642													23	28					1.10513e-12	1.22773e-12	1	1	0	
ZNF217	7764	broad.mit.edu	37	20	52199171	52199171	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:52199171C>T	uc002xwq.3	-	1	466	c.195G>A	c.(193-195)TTG>TTA	p.L65L	ZNF217_uc010gij.1_Silent_p.L57L	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	65	C2H2-type 1.				negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			ACATGCAATCCAAGGGCATAT	0.463													59	112					0	0	1	0	0	
CYP24A1	1591	broad.mit.edu	37	20	52773812	52773812	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:52773812T>C	uc002xwv.2	-	11	1849	c.1451A>G	c.(1450-1452)GAC>GGC	p.D484G	CYP24A1_uc002xwu.1_Missense_Mutation_p.D342G|CYP24A1_uc002xww.2_Missense_Mutation_p.D418G	NM_000782	NP_000773	Q07973	CP24A_HUMAN	cytochrome P450 family 24 subfamily A	484					hormone biosynthetic process|osteoblast differentiation|vitamin D catabolic process|vitamin D receptor signaling pathway|xenobiotic metabolic process	mitochondrial inner membrane	1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity|electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		STAD - Stomach adenocarcinoma(23;0.206)		Calcidiol(DB00146)|Calcitriol(DB00136)|Cholecalciferol(DB00169)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	GGCCTGGATGTCGTATTTGCG	0.507													11	20					0	0	1	0	0	
DOK5	55816	broad.mit.edu	37	20	53171512	53171512	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:53171512G>A	uc002xwy.2	+	2	327	c.107G>A	c.(106-108)AGC>AAC	p.S36N	DOK5_uc010gin.2_5'UTR|DOK5_uc002xwz.2_5'UTR	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	36	PH.						insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			AAAGCTTCAAGCAAAGGTCCA	0.388													21	41					0	0	1	0	0	
CASS4	57091	broad.mit.edu	37	20	55027827	55027827	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:55027827A>G	uc002xxp.2	+	6	1820	c.1595A>G	c.(1594-1596)GAA>GGA	p.E532G	CASS4_uc002xxq.3_Missense_Mutation_p.E532G|CASS4_uc002xxr.2_Missense_Mutation_p.E532G|CASS4_uc010zze.1_Missense_Mutation_p.E478G|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	532					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						ATCCTGCTTGAAACAAAGGAA	0.498													23	51					0	0	1	0	0	
BMP7	655	broad.mit.edu	37	20	55758796	55758796	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:55758796G>A	uc010gip.1	-	4	1469	c.940C>T	c.(940-942)CGG>TGG	p.R314W	BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Missense_Mutation_p.R314W	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	314					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			TTGGCCATCCGCAGGGCTTCC	0.647													33	60					0	0	1	0	0	
BMP7	655	broad.mit.edu	37	20	55840835	55840835	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:55840835C>T	uc010gip.1	-	1	873	c.344G>A	c.(343-345)GGC>GAC	p.G115D	BMP7_uc010giq.1_Missense_Mutation_p.G115D|BMP7_uc002xyc.2_Missense_Mutation_p.G115D|uc010gir.1_5'Flank	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	115					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			CAGAGGGGGGCCCTGGGTACT	0.647													8	11					0	0	1	0	0	
SPO11	23626	broad.mit.edu	37	20	55904928	55904928	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:55904928C>T	uc002xye.2	+	1	98	c.5C>T	c.(4-6)GCC>GTC	p.A2V	SPO11_uc002xyf.2_Missense_Mutation_p.A2V	NM_012444	NP_036576	Q9Y5K1	SPO11_HUMAN	meiotic recombination protein SPO11 isoform a	2					female gamete generation|reciprocal meiotic recombination	chromosome|nucleus	ATP binding|DNA binding|hydrolase activity			breast(2)|skin(1)	3	Lung NSC(12;0.0066)|all_lung(29;0.0188)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.73e-14)|Epithelial(14;9.02e-10)|all cancers(14;9.31e-09)			GCCCTCATGGCCTTTGCACCT	0.672								Editing_and_processing_nucleases					15	23					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	20	56063738	56063738	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:56063738C>T	uc010zzl.1	-	1	346	c.346G>A	c.(346-348)GAA>AAA	p.E116K		NM_001008735	NP_001008735			high-mobility group box 1-like 1																		CCAGGATGTTCTCCTTTGATT	0.493													68	97					0	0	1	0	0	
PCK1	5105	broad.mit.edu	37	20	56139347	56139347	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:56139347G>A	uc002xyn.3	+	7	1247	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	PCK1_uc010zzm.1_Missense_Mutation_p.E45K	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	362					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CAATGTGGCCGAGACCAGCGA	0.522													23	50					0	0	1	0	0	
NPEPL1	79716	broad.mit.edu	37	20	57273784	57273784	+	Silent	SNP	C	T	T	rs113729823		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:57273784C>T	uc010zzs.1	+	4	647	c.552C>T	c.(550-552)ATC>ATT	p.I184I	NPEPL1_uc010zzr.1_Silent_p.I136I|NPEPL1_uc002xzn.2_RNA|NPEPL1_uc010gjo.1_Silent_p.I156I|NPEPL1_uc002xzp.2_Silent_p.I72I	NM_024663	NP_078939	Q8NDH3	PEPL1_HUMAN	aminopeptidase-like 1	184					proteolysis	cytoplasm	aminopeptidase activity|manganese ion binding|metalloexopeptidase activity				0	all_lung(29;0.0175)		BRCA - Breast invasive adenocarcinoma(13;2.88e-09)|Colorectal(105;0.109)			CAGCCCGCATCGTGGACACAC	0.607													20	42					0	0	1	0	0	
GNAS	2778	broad.mit.edu	37	20	57428544	57428544	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:57428544G>T	uc002xzw.2	+	1	509	c.224G>T	c.(223-225)AGA>ATA	p.R75I	GNASAS_uc002xzs.1_5'Flank|GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GAGGTCTCCAGACCCAACTTT	0.617			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			17	23					3.32936e-07	3.48551e-07	1	1	0	
GNAS	2778	broad.mit.edu	37	20	57429085	57429085	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:57429085C>T	uc002xzw.2	+	1	1050	c.765C>T	c.(763-765)TTC>TTT	p.F255F	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GCAGCCAGTTCGCGGCAGTCG	0.662			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			6	9					0	0	1	0	0	
TH1L	51497	broad.mit.edu	37	20	57568761	57568761	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:57568761G>A	uc002yag.2	+	13	1577	c.1550G>A	c.(1549-1551)CGA>CAA	p.R517Q	TH1L_uc002yaf.1_RNA|TH1L_uc002yah.2_Intron	NM_198976	NP_945327	Q8IXH7	NELFD_HUMAN	TH1-like protein	517					negative regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	all_lung(29;0.00711)		Colorectal(105;0.109)			AGTTACATCCGAAAGTGTCTG	0.458													52	79					0	0	1	0	0	
PHACTR3	116154	broad.mit.edu	37	20	58411601	58411601	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:58411601G>T	uc002yau.2	+	9	1837	c.1370G>T	c.(1369-1371)AGA>ATA	p.R457I	PHACTR3_uc002yat.2_Missense_Mutation_p.R454I|PHACTR3_uc010zzw.1_Missense_Mutation_p.R416I|PHACTR3_uc002yav.2_Missense_Mutation_p.R416I|PHACTR3_uc002yaw.2_Missense_Mutation_p.R416I|PHACTR3_uc002yax.2_Missense_Mutation_p.R346I|PHACTR3_uc002yay.2_Missense_Mutation_p.R26I	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	457	RPEL 3.|Required for PP1CA binding and inhibition of PP1 activity.|Potential.					nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			CTGGAGAGAAGAAATATCTTG	0.483													20	43					2.89027e-11	3.162e-11	1	1	0	
SYCP2	10388	broad.mit.edu	37	20	58452530	58452530	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:58452530T>G	uc002yaz.2	-	32	3199	c.3060A>C	c.(3058-3060)AAA>AAC	p.K1020N		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	1020					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			TTTTTTTTGTTTTGGTTGCTT	0.323													25	45					0	0	1	0	0	
SYCP2	10388	broad.mit.edu	37	20	58467111	58467111	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:58467111A>G	uc002yaz.2	-	23	2437	c.2298T>C	c.(2296-2298)AGT>AGC	p.S766S		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	766					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			CTTTTCTATGACTTTGCACAT	0.333													22	55					0	0	1	0	0	
SYCP2	10388	broad.mit.edu	37	20	58476794	58476794	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:58476794C>A	uc002yaz.2	-	15	1244	c.1105G>T	c.(1105-1107)GAA>TAA	p.E369*	SYCP2_uc010gju.1_Nonsense_Mutation_p.E270*	NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	369					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			AAAAGCAATTCTTTCCCTTCT	0.289													19	56					5.3912e-06	5.59047e-06	1	1	0	
CDH26	60437	broad.mit.edu	37	20	58544061	58544061	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:58544061C>A	uc002ybe.2	+	2	409	c.109C>A	c.(109-111)CTT>ATT	p.L37I	CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	37	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			AACAGATGATCTTACTAAGCA	0.318													35	59					4.14481e-20	4.8834e-20	1	1	0	
CDH4	1002	broad.mit.edu	37	20	60503305	60503305	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:60503305A>G	uc002ybn.1	+	12	1843	c.1829A>G	c.(1828-1830)GAC>GGC	p.D610G	CDH4_uc002ybp.1_Missense_Mutation_p.D536G	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	610	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GACATCAACGACAACGCCCCT	0.627													61	150					0	0	1	0	0	
SLCO4A1	28231	broad.mit.edu	37	20	61299452	61299452	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:61299452G>T	uc002ydb.1	+	9	1932	c.1727G>T	c.(1726-1728)AGA>ATA	p.R576I	SLCO4A1_uc002ydc.1_Intron|LOC100127888_uc002ydd.2_5'Flank|SLCO4A1_uc002yde.1_Intron	NM_016354	NP_057438	Q96BD0	SO4A1_HUMAN	solute carrier organic anion transporter family	576	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(1)	1	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;2.33e-06)			ACTTGTCAGAGAAAGCCCCTC	0.493											OREG0026115	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	63					2.24893e-16	2.58354e-16	1	1	0	
TCFL5	10732	broad.mit.edu	37	20	61491643	61491643	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:61491643C>T	uc002ydp.2	-	2	758	c.665G>A	c.(664-666)CGA>CAA	p.R222Q	TCFL5_uc002ydo.2_5'UTR|TCFL5_uc002ydq.2_Missense_Mutation_p.R222Q	NM_006602	NP_006593	Q9UL49	TCFL5_HUMAN	transcription factor-like 5 protein	222					cell differentiation|multicellular organismal development|regulation of cell differentiation|regulation of cell proliferation|spermatogenesis|transcription from RNA polymerase II promoter		DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)	1	Breast(26;5.68e-08)					AGATGGATGTCGAATGAGAGT	0.428													25	52					0	0	1	0	0	
DIDO1	11083	broad.mit.edu	37	20	61513394	61513394	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:61513394G>A	uc002ydr.1	-	16	4178	c.3914C>T	c.(3913-3915)TCG>TTG	p.S1305L	DIDO1_uc002yds.1_Missense_Mutation_p.S1305L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1305					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GGAAGCAGACGAAGCGGTGGA	0.597													67	131					0	0	1	0	0	
COL20A1	57642	broad.mit.edu	37	20	61936897	61936897	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:61936897C>T	uc011aau.1	+	4	422	c.322C>T	c.(322-324)CGG>TGG	p.R108W	COL20A1_uc011aav.1_5'Flank	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	108	Fibronectin type-III 1.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CCTGCTAGCTCGGAGGGAGTT	0.652													8	7					0	0	1	0	0	
CHRNA4	1137	broad.mit.edu	37	20	61981912	61981912	+	Missense_Mutation	SNP	G	A	A	rs28931591		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:61981912G>A	uc002yes.2	-	5	1029	c.851C>T	c.(850-852)TCG>TTG	p.S284L	CHRNA4_uc002yet.1_Missense_Mutation_p.S108L|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Missense_Mutation_p.S213L|CHRNA4_uc002yev.1_Missense_Mutation_p.S108L|CHRNA4_uc010gkf.1_Missense_Mutation_p.S108L	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	284	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	GACGGTGAGCGACAGCAGCAC	0.587													34	54					0	0	1	0	0	
UCKL1	54963	broad.mit.edu	37	20	62572374	62572374	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:62572374C>T	uc010gkn.2	-	10	1088	c.1045G>A	c.(1045-1047)GAG>AAG	p.E349K	UCKL1_uc002yhj.2_5'UTR|UCKL1_uc011abm.1_Missense_Mutation_p.E334K|UCKL1_uc011abn.1_RNA|UCKL1_uc011abo.1_RNA	NM_017859	NP_060329	Q9NWZ5	UCKL1_HUMAN	uridine-cytidine kinase 1-like 1	349					interspecies interaction between organisms	endoplasmic reticulum|nucleus	ATP binding|phosphotransferase activity, alcohol group as acceptor|protein binding|uridine kinase activity				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					AAGATGAACTCGTCGCGACTG	0.652													7	25					0	0	1	0	0	
ZNF512B	57473	broad.mit.edu	37	20	62595509	62595509	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:62595509G>A	uc002yhl.1	-	8	1449	c.1395C>T	c.(1393-1395)GGC>GGT	p.G465G		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	465					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					CGTCCTCAGGGCCTGGCCCCT	0.662													43	92					0	0	1	0	0	
PRPF6	24148	broad.mit.edu	37	20	62624781	62624781	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:62624781A>C	uc002yho.2	+	4	549	c.381A>C	c.(379-381)GAA>GAC	p.E127D	PRPF6_uc002yhp.2_Missense_Mutation_p.E127D	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	127					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					AGAAAGAAGAAATAGAGAAAT	0.423													31	49					0	0	1	0	0	
NCRNA00176	284739	broad.mit.edu	37	20	62669793	62669793	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:62669793C>T	uc002yhq.2	+	3		c.3915C>T			NCRNA00176_uc011abq.1_Intron|NCRNA00176_uc010gko.2_Intron	NR_027686				Homo sapiens cDNA FLJ27267 fis, clone TMS00367.												0						CTGCAGGACGCTGCGCCAGGT	0.582													11	17					0	0	1	0	0	
MYT1	4661	broad.mit.edu	37	20	62831255	62831255	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:62831255G>T	uc002yii.2	+	4	430	c.66G>T	c.(64-66)GAG>GAT	p.E22D	MYT1_uc002yih.2_Missense_Mutation_p.E22D	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	22					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GACCCCCAGAGACCACAGCTG	0.478													73	46					1.7488e-33	2.14946e-33	1	1	0	
MYT1	4661	broad.mit.edu	37	20	62837075	62837075	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr20:62837075G>T	uc002yii.2	+	6	683	c.319G>T	c.(319-321)GAA>TAA	p.E107*	MYT1_uc002yih.2_Nonsense_Mutation_p.E107*|MYT1_uc002yij.2_5'Flank	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	107					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					TGTTTCGGATGAATCGGAAGG	0.592													46	16					5.34276e-22	6.35699e-22	1	1	0	
TPTE	7179	broad.mit.edu	37	21	10951415	10951415	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:10951415A>C	uc002yip.1	-	10	665	c.297T>G	c.(295-297)GTT>GTG	p.V99V	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.V81V|TPTE_uc002yir.1_Silent_p.V61V|TPTE_uc010gkv.1_5'UTR	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	99	Helical; (Potential).				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGACCAGGAAAACTCCAAATA	0.328													24	121					0	0	1	0	0	
TPTE	7179	broad.mit.edu	37	21	10998235	10998235	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:10998235T>G	uc002yis.1	-	11		c.2018A>C						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTTTCTCTTTTTGACACCAT	0.378													25	133					0	0	1	0	0	
TPTE	7179	broad.mit.edu	37	21	11020823	11020823	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:11020823A>G	uc002yis.1	-	5		c.1136T>C						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTTAATACTGACACAGTATGG	0.378													40	203					0	0	1	0	0	
BAGE2	85319	broad.mit.edu	37	21	11049620	11049620	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:11049620C>T	uc002yit.1	-	4	489	c.281G>A	c.(280-282)CGA>CAA	p.R94Q		NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CATCTTCCTTCGCTATAATTA	0.373													18	325					0	0	1	0	0	
C21orf81	391267	broad.mit.edu	37	21	15352252	15352252	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:15352252A>G	uc002yji.2	-	1		c.514T>C			C21orf81_uc002yjj.3_RNA	NR_027270				Homo sapiens C21orf81 protein (C21orf81) mRNA, complete cds.												0						ACTCCCAACCAACTGCTCTTG	0.612													9	6					0	0	1	0	0	
SAMSN1	64092	broad.mit.edu	37	21	15893519	15893519	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:15893519G>A	uc002yju.1	-	2	163	c.81C>T	c.(79-81)TTC>TTT	p.F27F	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Silent_p.F95F	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	27					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		GAAAACGATCGAAATTCCCAA	0.289													15	20					0	0	1	0	0	
NRIP1	8204	broad.mit.edu	37	21	16337265	16337265	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:16337265T>G	uc002yjx.2	-	4	3847	c.3249A>C	c.(3247-3249)GAA>GAC	p.E1083D		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	1083					androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		TGTCTTGTGTTTCTCGACTGG	0.413													79	136					0	0	1	0	0	
TMPRSS15	5651	broad.mit.edu	37	21	19653432	19653432	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:19653432T>G	uc002ykw.2	-	22	2624	c.2593A>C	c.(2593-2595)AAC>CAC	p.N865H		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	865	Extracellular (Potential).|Peptidase S1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						TAATGAGGGTTTATGACAATT	0.383													71	132					0	0	1	0	0	
TMPRSS15	5651	broad.mit.edu	37	21	19670096	19670096	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:19670096A>G	uc002ykw.2	-	19	2247	c.2216T>C	c.(2215-2217)GTC>GCC	p.V739A		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	739	Extracellular (Potential).|SRCR.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GTTTAATTTGACAAATGGTCC	0.393													24	52					0	0	1	0	0	
NCAM2	4685	broad.mit.edu	37	21	22881337	22881337	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:22881337G>A	uc002yld.1	+	16	2492	c.2243G>A	c.(2242-2244)GGC>GAC	p.G748D	NCAM2_uc011acb.1_Missense_Mutation_p.G606D	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	748	Cytoplasmic (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		GGCTCCAGTGGCAAAAGTAAA	0.448													21	57					0	0	1	0	0	
NCAM2	4685	broad.mit.edu	37	21	22910240	22910240	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:22910240G>A	uc002yld.1	+	18	2725	c.2476G>A	c.(2476-2478)GAC>AAC	p.D826N	NCAM2_uc011acb.1_Missense_Mutation_p.D684N	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	826	Cytoplasmic (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		AGTTTCTAACGACATCATTCA	0.343													47	31					0	0	1	0	0	
ADAMTS5	11096	broad.mit.edu	37	21	28296687	28296687	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:28296687C>T	uc002ymg.2	-	8	3207	c.2478G>A	c.(2476-2478)ACG>ACA	p.T826T		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	826	Spacer.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						GAATTTCCTTCGTGGCAGAGT	0.443													55	100					0	0	1	0	0	
ADAMTS5	11096	broad.mit.edu	37	21	28327064	28327064	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:28327064C>T	uc002ymg.2	-	2	1960	c.1231G>A	c.(1231-1233)GAA>AAA	p.E411K		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	411	Peptidase M12B.	By similarity.			proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						ATACCGATTTCGTGAGCCACA	0.488													24	61					0	0	1	0	0	
USP16	10600	broad.mit.edu	37	21	30419571	30419571	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:30419571G>A	uc002ymy.2	+	14	2142	c.1940G>A	c.(1939-1941)CGA>CAA	p.R647Q	USP16_uc002ymx.2_Missense_Mutation_p.R646Q|USP16_uc002ymw.2_Missense_Mutation_p.R647Q|USP16_uc011acm.1_Missense_Mutation_p.R632Q|USP16_uc011acn.1_Missense_Mutation_p.R313Q|USP16_uc011aco.1_Missense_Mutation_p.R337Q	NM_006447	NP_006438	Q9Y5T5	UBP16_HUMAN	ubiquitin specific protease 16 isoform a	647					cell division|histone deubiquitination|mitosis|positive regulation of transcription, DNA-dependent|protein homotetramerization|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|histone binding|transcription coactivator activity|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(2)|breast(1)|pancreas(1)	4						GAGAAACTTCGAGATGCGAAT	0.368													63	86					0	0	1	0	0	
USP16	10600	broad.mit.edu	37	21	30422460	30422460	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:30422460A>C	uc002ymy.2	+	16	2356	c.2154A>C	c.(2152-2154)GAA>GAC	p.E718D	USP16_uc002ymx.2_Missense_Mutation_p.E717D|USP16_uc002ymw.2_Missense_Mutation_p.E718D|USP16_uc011acm.1_Missense_Mutation_p.E703D|USP16_uc011acn.1_Missense_Mutation_p.E384D|USP16_uc011aco.1_Missense_Mutation_p.E408D	NM_006447	NP_006438	Q9Y5T5	UBP16_HUMAN	ubiquitin specific protease 16 isoform a	718					cell division|histone deubiquitination|mitosis|positive regulation of transcription, DNA-dependent|protein homotetramerization|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|histone binding|transcription coactivator activity|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(2)|breast(1)|pancreas(1)	4						AGTTTCCGGAAATCTTAGATT	0.358													26	34					0	0	1	0	0	
GRIK1	2897	broad.mit.edu	37	21	30925894	30925894	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:30925894G>T	uc002yno.1	-	17	3203	c.2739C>A	c.(2737-2739)TCC>TCA	p.S913S	GRIK1_uc002ynn.2_Intron|GRIK1_uc011acs.1_Intron|GRIK1_uc011act.1_Intron	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	913	Cytoplasmic (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TATGAACTGAGGACTGTTTTC	0.348													24	59					2.89027e-11	3.162e-11	1	1	0	
KRTAP24-1	643803	broad.mit.edu	37	21	31654595	31654595	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:31654595C>T	uc002ynv.2	-	1	682	c.656G>A	c.(655-657)CGA>CAA	p.R219Q		NM_001085455	NP_001078924	Q3LI83	KR241_HUMAN	keratin associated protein 24-1	219	3.|6 X 10 AA repeats of Y-[ILR]-[SVPC]- [NRTS]-[SNTG]-X-[QHRP]-[PSY]-[QSL]-[SRK].					keratin filament	structural molecule activity				0						GCTCAGTGGTCGGCAGCTCGT	0.438													41	83					0	0	1	0	0	
KRTAP27-1	643812	broad.mit.edu	37	21	31709589	31709589	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:31709589G>A	uc002ynx.1	-	1	424	c.398C>T	c.(397-399)CCT>CTT	p.P133L		NM_001077711	NP_001071179	Q3LI81	KR271_HUMAN	keratin associated protein 27-1	133						intermediate filament				ovary(2)	2						GAGGCTTGCAGGTTGGCAGCT	0.488													63	171					0	0	1	0	0	
KRTAP13-1	140258	broad.mit.edu	37	21	31768675	31768675	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:31768675C>A	uc002yoa.2	+	1	284	c.271C>A	c.(271-273)CCC>ACC	p.P91T		NM_181599	NP_853630	Q8IUC0	KR131_HUMAN	keratin associated protein 13-1	91	5 X 10 AA approximate repeats.					intermediate filament				ovary(1)	1						GCTCTGCAGTCCCTGCCAGAC	0.617													30	62					1.88708e-17	2.18811e-17	1	1	0	
KRTAP19-5	337972	broad.mit.edu	37	21	31874354	31874354	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:31874354C>T	uc011ada.1	-	1	55	c.55G>A	c.(55-57)GAT>AAT	p.D19N		NM_181611	NP_853642	Q3LI72	KR195_HUMAN	keratin associated protein 19-5	19						intermediate filament	protein binding				0						CCCAGGTCATCGAAGCCTCCG	0.587													65	138					0	0	1	0	0	
TIAM1	7074	broad.mit.edu	37	21	32519234	32519234	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:32519234C>A	uc002yow.1	-	21	3926	c.3454G>T	c.(3454-3456)GTT>TTT	p.V1152F	TIAM1_uc011adk.1_Missense_Mutation_p.V1152F|TIAM1_uc011adl.1_Missense_Mutation_p.V1092F	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1152	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ACCTTGGGAACTTTTGTGTGG	0.537													11	40					3.03607e-14	3.42253e-14	1	1	0	
TIAM1	7074	broad.mit.edu	37	21	32559358	32559358	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:32559358T>C	uc002yow.1	-	15	3093	c.2621A>G	c.(2620-2622)TAC>TGC	p.Y874C	TIAM1_uc011adk.1_Missense_Mutation_p.Y874C|TIAM1_uc011adl.1_Missense_Mutation_p.Y814C	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	874	PDZ.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ACTATTCACGTACAGCCTTCG	0.453													71	125					0	0	1	0	0	
SFRS15	57466	broad.mit.edu	37	21	33068467	33068467	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:33068467G>A	uc002ypd.2	-	9	1453	c.1027C>T	c.(1027-1029)CCA>TCA	p.P343S	SFRS15_uc002ype.2_Missense_Mutation_p.P343S|SFRS15_uc010glu.2_Missense_Mutation_p.P328S|SFRS15_uc002ypf.1_Missense_Mutation_p.P17S	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	343						nucleus	nucleotide binding|RNA binding				0						ATCATTCGTGGCTGAAACTGA	0.403													89	173					0	0	1	0	0	
SYNJ1	8867	broad.mit.edu	37	21	34030180	34030180	+	Silent	SNP	A	C	C	rs145411448		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:34030180A>C	uc002yqh.2	-	19	2424	c.2424T>G	c.(2422-2424)GTT>GTG	p.V808V	SYNJ1_uc011ads.1_Silent_p.V764V|SYNJ1_uc002yqf.2_Silent_p.V769V|SYNJ1_uc002yqg.2_Silent_p.V764V|SYNJ1_uc002yqi.2_Silent_p.V808V	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	769	Catalytic (Potential).						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						ATCCTCTAAAAACCTAAAATA	0.289													8	26					0	0	1	0	0	
SYNJ1	8867	broad.mit.edu	37	21	34058149	34058149	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:34058149T>G	uc002yqh.2	-	9	1144	c.1144A>C	c.(1144-1146)AAG>CAG	p.K382Q	SYNJ1_uc011ads.1_Missense_Mutation_p.K343Q|SYNJ1_uc002yqf.2_Missense_Mutation_p.K343Q|SYNJ1_uc002yqg.2_Missense_Mutation_p.K343Q|SYNJ1_uc002yqi.2_Missense_Mutation_p.K382Q	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	343	SAC.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						TTTTCTGCCTTTCCTCCCTTA	0.338													38	56					0	0	1	0	0	
GCFC1	94104	broad.mit.edu	37	21	34132150	34132150	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:34132150T>G	uc002yqn.2	-	6	1321	c.1131A>C	c.(1129-1131)AAA>AAC	p.K377N	GCFC1_uc002yqo.2_RNA|GCFC1_uc002yqp.2_Missense_Mutation_p.K377N|GCFC1_uc002yqr.2_Missense_Mutation_p.K377N	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	377						cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TACTGGGAGTTTTGAAAGGGA	0.413													61	113					0	0	1	0	0	
IL10RB	3588	broad.mit.edu	37	21	34652088	34652088	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:34652088A>C	uc002yrk.1	+	4	462	c.363A>C	c.(361-363)GAA>GAC	p.E121D	IL10RB_uc002yrh.1_Missense_Mutation_p.E191D|IL10RB_uc002yri.1_Missense_Mutation_p.E74D|IL10RB_uc002yrl.1_Missense_Mutation_p.E123D	NM_000628	NP_000619	Q08334	I10R2_HUMAN	interleukin 10 receptor, beta precursor	121	Fibronectin type-III.|Extracellular (Potential).				immune response|inflammatory response	interleukin-28 receptor complex	protein binding|receptor activity				0						TGCAAGTAGAAGTACTTGCTG	0.328													58	128					0	0	1	0	0	
IFNAR1	3454	broad.mit.edu	37	21	34725189	34725189	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:34725189C>T	uc002yrn.2	+	9	1416	c.1269C>T	c.(1267-1269)GAC>GAT	p.D423D	IFNAR1_uc011adv.1_Silent_p.D354D	NM_000629	NP_000620	P17181	INAR1_HUMAN	interferon-alpha receptor 1 precursor	423	Fibronectin type-III 3.|Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	integral to plasma membrane	type I interferon receptor activity			central_nervous_system(1)|skin(1)	2					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	TTTTTAGTGACGCTGTATGTG	0.323													33	69					0	0	1	0	0	
SON	6651	broad.mit.edu	37	21	34922384	34922384	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:34922384T>A	uc002yse.1	+	3	896	c.847T>A	c.(847-849)TCT>ACT	p.S283T	SON_uc002ysb.1_Missense_Mutation_p.S283T|SON_uc002ysc.2_Missense_Mutation_p.S283T|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	283					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						GGAGAGCACATCTCCAGAGCC	0.463											OREG0003564	type=REGULATORY REGION|Gene=AK074269|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	39	88					0	0	1	0	0	
SON	6651	broad.mit.edu	37	21	34922611	34922611	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:34922611G>A	uc002yse.1	+	3	1123	c.1074G>A	c.(1072-1074)CCG>CCA	p.P358P	SON_uc002ysb.1_Silent_p.P358P|SON_uc002ysc.2_Silent_p.P358P|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	358					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						TGACAAGACCGCAGGAGTTGC	0.567													49	88					0	0	1	0	0	
SON	6651	broad.mit.edu	37	21	34923451	34923451	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:34923451G>A	uc002yse.1	+	3	1963	c.1914G>A	c.(1912-1914)GCG>GCA	p.A638A	SON_uc002ysb.1_Silent_p.A638A|SON_uc002ysc.2_Silent_p.A638A|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	638					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						AGCCTGGGGCGCCAGAGTTGC	0.627													25	45					0	0	1	0	0	
SON	6651	broad.mit.edu	37	21	34931566	34931566	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:34931566G>T	uc002yse.1	+	5	6401	c.6352G>T	c.(6352-6354)GAT>TAT	p.D2118Y	SON_uc002ysc.2_Missense_Mutation_p.D2118Y|SON_uc002ysd.2_Missense_Mutation_p.D1109Y|SON_uc002ysf.1_Missense_Mutation_p.D146Y|SON_uc002ysg.2_Missense_Mutation_p.D1109Y	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	2118					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						GAGTAAAGAAGATGATGATGT	0.313													51	52					2.27781e-18	2.66151e-18	1	1	0	
ITSN1	6453	broad.mit.edu	37	21	35127704	35127704	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:35127704T>C	uc002yta.1	+	8	992	c.724_splice	c.e8+2	p.G242_splice	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_Splice_Site|ITSN1_uc002ysz.2_Splice_Site_p.G242_splice|ITSN1_uc010gmg.2_Splice_Site_p.G205_splice|ITSN1_uc010gmh.2_Splice_Site|ITSN1_uc002ysw.2_Splice_Site_p.G242_splice|ITSN1_uc010gmi.2_Splice_Site_p.G205_splice|ITSN1_uc010gmj.2_Splice_Site_p.G126_splice|ITSN1_uc002ysy.2_Splice_Site_p.G242_splice|ITSN1_uc002ysx.2_Splice_Site_p.G205_splice|ITSN1_uc002ytb.1_Splice_Site_p.G242_splice|ITSN1_uc002ytc.1_Splice_Site_p.G242_splice|ITSN1_uc002ytd.2_Splice_Site|ITSN1_uc010gmk.2_Splice_Site_p.G205_splice|ITSN1_uc010gml.2_Splice_Site|ITSN1_uc002ytj.2_Splice_Site_p.G242_splice|ITSN1_uc010gmm.1_Splice_Site|ITSN1_uc002yte.2_Splice_Site_p.G176_splice	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l						apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						ACTTAACAGGTATTTACAAAT	0.348													12	34					0	0	1	0	0	
ITSN1	6453	broad.mit.edu	37	21	35260458	35260458	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:35260458T>G	uc002yta.1	+	40	5288	c.5020T>G	c.(5020-5022)TTT>GTT	p.F1674V	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Missense_Mutation_p.F1669V|ITSN1_uc002ytj.2_Missense_Mutation_p.F1613V|ITSN1_uc010gmm.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1674	C2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						CTTTTCAGATTTTTTGGGTCG	0.527													41	47					0	0	1	0	0	
SLC5A3	6526	broad.mit.edu	37	21	35467556	35467556	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:35467556T>C	uc002yto.2	+	2	571	c.59T>C	c.(58-60)GTC>GCC	p.V20A	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	20	Helical; (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						TTTATCCTGGTCATGTGCATT	0.468													48	101					0	0	1	0	0	
MIR802	768219	broad.mit.edu	37	21	37093076	37093076	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:37093076C>A	hsa-mir-802|MI0003906	+			c.64C>A			RUNX1_uc002yut.1_Intron																	0						CAAGGAGAATCTTTGTCACTT	0.443													12	52					2.80697e-09	3.01096e-09	1	1	0	
DOPEY2	9980	broad.mit.edu	37	21	37603319	37603319	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:37603319G>A	uc002yvg.2	+	14	2316	c.2237G>A	c.(2236-2238)CGC>CAC	p.R746H	DOPEY2_uc011aeb.1_Missense_Mutation_p.R746H	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	746					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						AGGGAGGAACGCAGGGAGGCC	0.612													34	62					0	0	1	0	0	
DOPEY2	9980	broad.mit.edu	37	21	37664487	37664487	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:37664487C>A	uc002yvg.2	+	36	6680	c.6601C>A	c.(6601-6603)CCC>ACC	p.P2201T	DOPEY2_uc011aeb.1_Missense_Mutation_p.P2150T	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	2201					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						AGAATGCAAACCCCACACTGT	0.353													34	66					3.76114e-14	4.23289e-14	1	1	0	
MORC3	23515	broad.mit.edu	37	21	37741635	37741635	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:37741635G>A	uc002yvi.2	+	15	2045	c.1969G>A	c.(1969-1971)GAC>AAC	p.D657N		NM_015358	NP_056173	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	657					cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			ovary(2)	2						AACTGTTGAAGACGAGATAGA	0.433													31	80					0	0	1	0	0	
TTC3	7267	broad.mit.edu	37	21	38494187	38494187	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:38494187A>C	uc002yvz.2	+	12	1076	c.971A>C	c.(970-972)AAA>ACA	p.K324T	TTC3_uc011aee.1_Missense_Mutation_p.K14T|TTC3_uc002ywa.2_Missense_Mutation_p.K324T|TTC3_uc002ywb.2_Missense_Mutation_p.K324T|TTC3_uc010gnf.2_Missense_Mutation_p.K89T|TTC3_uc002ywc.2_Missense_Mutation_p.K14T|TTC3_uc011aed.1_Missense_Mutation_p.K14T|TTC3_uc010gne.1_Missense_Mutation_p.K324T	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	324					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GCAAACATAAAAGCTCAAAAA	0.358													25	44					0	0	1	0	0	
TTC3	7267	broad.mit.edu	37	21	38501357	38501357	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:38501357A>C	uc002yvz.2	+	16	1457	c.1352A>C	c.(1351-1353)AAG>ACG	p.K451T	TTC3_uc011aee.1_Missense_Mutation_p.K141T|TTC3_uc002ywa.2_Missense_Mutation_p.K451T|TTC3_uc002ywb.2_Missense_Mutation_p.K451T|TTC3_uc010gnf.2_Missense_Mutation_p.K216T|TTC3_uc002ywc.2_Missense_Mutation_p.K141T|TTC3_uc011aed.1_Missense_Mutation_p.K141T|TTC3_uc010gne.1_Missense_Mutation_p.K451T	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	451					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GAATCAGAAAAGTTCAGGTAT	0.299													18	44					0	0	1	0	0	
TTC3	7267	broad.mit.edu	37	21	38559387	38559387	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:38559387T>C	uc002yvz.2	+	38	4969	c.4864T>C	c.(4864-4866)TAT>CAT	p.Y1622H	TTC3_uc002ywa.2_Missense_Mutation_p.Y1622H|TTC3_uc002ywb.2_Missense_Mutation_p.Y1622H|TTC3_uc010gnf.2_Missense_Mutation_p.Y1387H|TTC3_uc002ywc.2_Missense_Mutation_p.Y1312H	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1622					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				AATAGAAGAGTATATAAAGAA	0.358													15	28					0	0	1	0	0	
DYRK1A	1859	broad.mit.edu	37	21	38853084	38853084	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:38853084C>T	uc002ywk.2	+	4	547	c.472C>T	c.(472-474)CGT>TGT	p.R158C	DYRK1A_uc002ywh.1_Missense_Mutation_p.R120C|DYRK1A_uc002ywi.2_Missense_Mutation_p.R158C|DYRK1A_uc002ywj.2_Missense_Mutation_p.R149C|DYRK1A_uc002ywl.2_Missense_Mutation_p.R158C|DYRK1A_uc002ywm.2_Missense_Mutation_p.R158C	NM_001396	NP_001387	Q13627	DYR1A_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	158					nervous system development|peptidyl-tyrosine phosphorylation|protein autophosphorylation	nuclear speck	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein self-association|protein serine/threonine kinase activity			ovary(2)|lung(1)|breast(1)	4						GTGGATGGATCGTTACGAAAT	0.338													26	71					0	0	1	0	0	
DYRK1A	1859	broad.mit.edu	37	21	38862486	38862486	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:38862486A>C	uc002ywk.2	+	6	749	c.674A>C	c.(673-675)AAA>ACA	p.K225T	DYRK1A_uc002ywi.2_Missense_Mutation_p.K225T|DYRK1A_uc002ywj.2_Missense_Mutation_p.K216T|DYRK1A_uc002ywl.2_Missense_Mutation_p.K225T|DYRK1A_uc002ywm.2_Missense_Mutation_p.K225T|DYRK1A_uc011aei.1_5'UTR	NM_001396	NP_001387	Q13627	DYR1A_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	225	Protein kinase.				nervous system development|peptidyl-tyrosine phosphorylation|protein autophosphorylation	nuclear speck	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein self-association|protein serine/threonine kinase activity			ovary(2)|lung(1)|breast(1)	4						GTGCATTTGAAACGCCACTTT	0.343													22	47					0	0	1	0	0	
KCNJ6	3763	broad.mit.edu	37	21	38997769	38997769	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:38997769G>A	uc011aej.1	-	4	1017	c.964C>T	c.(964-966)CGA>TGA	p.R322*	KCNJ6_uc002ywo.2_Nonsense_Mutation_p.R322*	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	322	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TAGGAGCTTCGAGCTTGGCAT	0.527													18	37					0	0	1	0	0	
KCNJ15	3772	broad.mit.edu	37	21	39671201	39671201	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:39671201C>T	uc002ywv.2	+	4	320	c.18C>T	c.(16-18)ATC>ATT	p.I6I	KCNJ15_uc002yww.2_Silent_p.I6I|KCNJ15_uc002ywx.2_Silent_p.I6I	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	6	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						CCATTCACATCGGCATGTCCA	0.517													31	52					0	0	1	0	0	
ERG	2078	broad.mit.edu	37	21	39755649	39755649	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:39755649G>A	uc010gnw.2	-	12	1432	c.1137C>T	c.(1135-1137)TAC>TAT	p.Y379Y	ERG_uc002yxa.2_Silent_p.Y372Y|ERG_uc011aek.1_Silent_p.Y280Y|ERG_uc010gnv.2_Silent_p.Y256Y|ERG_uc010gnx.2_Silent_p.Y355Y|ERG_uc011ael.1_Silent_p.Y379Y|ERG_uc002yxb.2_Silent_p.Y355Y	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	379	ETS.				cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				TCTTGTCATAGTAGTAACGGA	0.602													36	81					0	0	1	0	0	
ERG	2078	broad.mit.edu	37	21	39775557	39775557	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:39775557C>T	uc010gnw.2	-	6	779	c.484G>A	c.(484-486)GTC>ATC	p.V162I	ERG_uc002yxa.2_Missense_Mutation_p.V155I|ERG_uc011aek.1_Missense_Mutation_p.V63I|ERG_uc010gnv.2_Missense_Mutation_p.V63I|ERG_uc010gnx.2_Missense_Mutation_p.V162I|ERG_uc011ael.1_Missense_Mutation_p.V162I|ERG_uc002yxb.2_Missense_Mutation_p.V162I|ERG_uc011aem.1_Intron|ERG_uc002yxc.3_Missense_Mutation_p.V162I|ERG_uc010gny.1_RNA	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	162	PNT.				cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				AAGATGTTGACGTCTGGAAGG	0.527													25	65					0	0	1	0	0	
ETS2	2114	broad.mit.edu	37	21	40189001	40189001	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:40189001A>G	uc002yxg.2	+	6	771	c.575A>G	c.(574-576)AAC>AGC	p.N192S	ETS2_uc002yxf.2_Missense_Mutation_p.N332S	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	192					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				CATTGGATTAACAGCAATACA	0.423													45	90					0	0	1	0	0	
LCA5L	150082	broad.mit.edu	37	21	40783699	40783699	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:40783699G>A	uc002yxu.2	-	7	1318	c.1005C>T	c.(1003-1005)AAC>AAT	p.N335N	LCA5L_uc002yxv.2_Silent_p.N335N	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	335	Potential.										0		Prostate(19;1.2e-06)				GACTATAGATGTTTTTAATTT	0.279													19	41					0	0	1	0	0	
LCA5L	150082	broad.mit.edu	37	21	40800375	40800375	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:40800375G>T	uc002yxu.2	-	4	358	c.45C>A	c.(43-45)TTC>TTA	p.F15L	LCA5L_uc002yxv.2_Missense_Mutation_p.F15L|LCA5L_uc002yxw.1_Missense_Mutation_p.F15L|LCA5L_uc002yxx.1_Intron|LCA5L_uc002yxy.2_RNA	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	15											0		Prostate(19;1.2e-06)				CCACGCCGAAGAAATGCTCAT	0.363													28	61					1.08312e-15	1.23716e-15	1	1	0	
SH3BGR	6450	broad.mit.edu	37	21	40834341	40834341	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:40834341C>T	uc002yya.2	+	2	329	c.275C>T	c.(274-276)GCG>GTG	p.A92V	SH3BGR_uc002yxz.2_5'UTR	NM_007341	NP_031367	P55822	SH3BG_HUMAN	SH3-binding domain and glutamic acid-rich	92					protein complex assembly	cytosol	SH3 domain binding|SH3/SH2 adaptor activity				0		all_cancers(19;1.16e-23)|all_epithelial(19;1.22e-20)|Prostate(19;2.55e-06)|Breast(209;0.0133)		STAD - Stomach adenocarcinoma(101;0.00151)		TTTTTGGAAGCGAATAAAATC	0.358													24	74					0	0	1	0	0	
DSCAM	1826	broad.mit.edu	37	21	41559880	41559880	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:41559880A>C	uc002yyq.1	-	13	3040	c.2588T>G	c.(2587-2589)TTT>TGT	p.F863C	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	863	Ig-like C2-type 9.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATGGCAGGAAAAGAAACCAGA	0.398													25	40					0	0	1	0	0	
DSCAM	1826	broad.mit.edu	37	21	41684041	41684041	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:41684041C>T	uc002yyq.1	-	9	2481	c.2029G>A	c.(2029-2031)GCT>ACT	p.A677T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	677	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TGCTCCACAGCGGCGGCCTCA	0.478													56	106					0	0	1	0	0	
DSCAM	1826	broad.mit.edu	37	21	41684283	41684283	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:41684283G>A	uc002yyq.1	-	9	2239	c.1787C>T	c.(1786-1788)CCG>CTG	p.P596L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	596	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TATGAAAGGCGGAACTGCAAG	0.448													9	18					0	0	1	0	0	
BACE2	25825	broad.mit.edu	37	21	42617914	42617914	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:42617914A>G	uc002yyw.2	+	6	1371	c.908A>G	c.(907-909)GAC>GGC	p.D303G	BACE2_uc002yyx.2_Missense_Mutation_p.D303G|BACE2_uc002yyy.2_Missense_Mutation_p.D303G|BACE2_uc010goo.2_RNA	NM_012105	NP_036237	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2 isoform A	303	Extracellular (Potential).			D->A: Loss of autoproteolytic cleavage.	membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				GCCATCGTGGACAGTGGCACC	0.632													8	16					0	0	1	0	0	
BACE2	25825	broad.mit.edu	37	21	42647372	42647372	+	Missense_Mutation	SNP	G	A	A	rs149345353	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:42647372G>A	uc002yyw.2	+	9	1841	c.1378G>A	c.(1378-1380)GCT>ACT	p.A460T	BACE2_uc002yyx.2_Missense_Mutation_p.A410T|BACE2_uc002yyy.2_3'UTR|BACE2_uc010goo.2_RNA	NM_012105	NP_036237	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2 isoform A	460	Extracellular (Potential).				membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				CTGTGTCCCCGCTCAGTCTTT	0.527													28	64					0	0	1	0	0	
UMODL1	89766	broad.mit.edu	37	21	43533907	43533907	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:43533907G>T	uc002zaf.1	+	13	2329	c.2329G>T	c.(2329-2331)GAA>TAA	p.E777*	UMODL1_uc002zad.1_Nonsense_Mutation_p.E705*|UMODL1_uc002zae.1_Nonsense_Mutation_p.E833*|UMODL1_uc002zag.1_Nonsense_Mutation_p.E905*	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	777	Extracellular (Potential).|Fibronectin type-III 2.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						ATGTGGGAAAGAAGGTGCCAG	0.483													15	40					6.31663e-08	6.6657e-08	1	1	0	
ABCG1	9619	broad.mit.edu	37	21	43702514	43702514	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:43702514T>C	uc002zaq.2	+	6	825	c.719T>C	c.(718-720)TTC>TCC	p.F240S	ABCG1_uc002zan.2_Missense_Mutation_p.F242S|ABCG1_uc002zam.2_Missense_Mutation_p.F218S|ABCG1_uc002zao.2_Missense_Mutation_p.F237S|ABCG1_uc002zap.2_Missense_Mutation_p.F240S|ABCG1_uc002zar.2_Missense_Mutation_p.F251S|ABCG1_uc011aev.1_Missense_Mutation_p.F251S	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	240	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	GTCATGTTCTTCGATGAGCCC	0.607													14	20					0	0	1	0	0	
ABCG1	9619	broad.mit.edu	37	21	43716283	43716283	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:43716283C>T	uc002zaq.2	+	15	1924	c.1818C>T	c.(1816-1818)TTC>TTT	p.F606F	ABCG1_uc002zan.2_Silent_p.F596F|ABCG1_uc002zam.2_Silent_p.F572F|ABCG1_uc002zao.2_Silent_p.F591F|ABCG1_uc002zap.2_Silent_p.F594F|ABCG1_uc002zar.2_Silent_p.F605F|ABCG1_uc011aev.1_Silent_p.F617F|uc002zau.2_5'Flank	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	606	ABC transmembrane type-2.|Extracellular (Potential).				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	GGTATGGGTTCGAAGGGGTCA	0.587													24	55					0	0	1	0	0	
UBASH3A	53347	broad.mit.edu	37	21	43862610	43862610	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:43862610T>G	uc002zbe.2	+	12	1571	c.1535T>G	c.(1534-1536)TTT>TGT	p.F512C	UBASH3A_uc002zbf.2_Missense_Mutation_p.F474C|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Missense_Mutation_p.F474C	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	512	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						CCTGGAATCTTTGAATGGACA	0.418													52	75					0	0	1	0	0	
PKNOX1	5316	broad.mit.edu	37	21	44444988	44444988	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:44444988A>G	uc002zcq.1	+	9	1045	c.857A>G	c.(856-858)TAC>TGC	p.Y286C	PKNOX1_uc002zcp.1_Missense_Mutation_p.Y286C|PKNOX1_uc011aex.1_Missense_Mutation_p.Y169C	NM_004571	NP_004562	P55347	PKNX1_HUMAN	PBX/knotted 1 homeobox 1	286	Homeobox; TALE-type.						sequence-specific DNA binding			large_intestine(2)	2						CAGCATCCCTACCCAACAGAG	0.398													27	49					0	0	1	0	0	
CBS	875	broad.mit.edu	37	21	44488638	44488638	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:44488638G>A	uc002zcu.2	-	4	542	c.297C>T	c.(295-297)TTC>TTT	p.F99F	CBS_uc002zcs.1_5'Flank|CBS_uc002zct.2_Silent_p.F99F|CBS_uc002zcw.3_Silent_p.F99F|CBS_uc002zcv.2_Silent_p.F99F	NM_000071	NP_000062	P35520	CBS_HUMAN	cystathionine-beta-synthase	99					cysteine biosynthetic process from serine|cysteine biosynthetic process via cystathionine|homocysteine catabolic process|hydrogen sulfide biosynthetic process|L-cysteine catabolic process|L-serine catabolic process	cytosol|nucleolus	cystathionine beta-synthase activity|heme binding|protein homodimerization activity|pyridoxal phosphate binding|ubiquitin protein ligase binding				0					L-Cysteine(DB00151)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|S-Adenosylmethionine(DB00118)	ACTTCAGGCCGAACTTCTTCC	0.443													25	46					0	0	1	0	0	
TRAPPC10	7109	broad.mit.edu	37	21	45504019	45504019	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:45504019C>T	uc002zea.2	+	15	2424	c.2255C>T	c.(2254-2256)ACG>ATG	p.T752M	TRAPPC10_uc010gpo.2_Missense_Mutation_p.T463M|TRAPPC10_uc011afa.1_Missense_Mutation_p.T171M	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	752					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						GAACCTGGAACGTATACACTC	0.567													12	28					0	0	1	0	0	
PWP2	5822	broad.mit.edu	37	21	45540313	45540313	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:45540313G>A	uc002zeb.2	+	11	1363	c.1273G>A	c.(1273-1275)GCC>ACC	p.A425T		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	425	WD 9.					cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		GACCTTTACTGCCACCGGCTA	0.587													57	116					0	0	1	0	0	
KRTAP10-4	386672	broad.mit.edu	37	21	45994370	45994370	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:45994370G>T	uc002zfk.1	+	1	765	c.735G>T	c.(733-735)GAG>GAT	p.E245D	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	245	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						TGTGCTCTGAGGATTCCTCTT	0.637													52	134					1.86633e-21	2.21483e-21	1	1	0	
KRTAP10-9	386676	broad.mit.edu	37	21	46047149	46047149	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:46047149G>A	uc002zfp.3	+	1	110	c.61G>A	c.(61-63)GAC>AAC	p.D21N	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	21						keratin filament					0						GCAGGTGGACGACTGCCCAGA	0.672													31	74					0	0	1	0	0	
KRTAP10-9	386676	broad.mit.edu	37	21	46047218	46047218	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:46047218A>G	uc002zfp.3	+	1	179	c.130A>G	c.(130-132)ACC>GCC	p.T44A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198690	NP_941963	P60411	KR109_HUMAN	keratin associated protein 10-9	44	25 X 5 AA repeats of C-C-X(3).					keratin filament					0						CCCCTGCCTGACCCTGGTCTG	0.697													54	79					0	0	1	0	0	
KRTAP12-4	386684	broad.mit.edu	37	21	46074227	46074227	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:46074227C>A	uc002zfs.1	-	1	350	c.305G>T	c.(304-306)AGA>ATA	p.R102I	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198698	NP_941971	P60329	KR124_HUMAN	keratin associated protein 12-4	102						keratin filament				ovary(1)	1						GGTGACAGGTCTATAGACCAG	0.617													21	43					9.57634e-11	1.04293e-10	1	1	0	
KRTAP12-3	386683	broad.mit.edu	37	21	46078099	46078099	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:46078099C>A	uc002zft.2	+	1	251	c.203C>A	c.(202-204)CCC>CAC	p.P68H	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198697	NP_941970	P60328	KR123_HUMAN	keratin associated protein 12-3	68	14 X 5 AA approximate repeats.					intermediate filament				central_nervous_system(1)	1						TATGTGACTCCCTCTTGCCAA	0.647													35	105					3.76114e-14	4.23289e-14	1	1	0	
ITGB2	3689	broad.mit.edu	37	21	46309280	46309280	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:46309280G>A	uc002zgd.2	-	12	1832	c.1788C>T	c.(1786-1788)TGC>TGT	p.C596C	ITGB2_uc002zge.2_Silent_p.C596C|ITGB2_uc002zgf.3_Silent_p.C596C|ITGB2_uc011afl.1_Silent_p.C518C|ITGB2_uc010gpw.2_Silent_p.C539C|ITGB2_uc002zgg.2_Silent_p.C596C	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	596	Extracellular (Potential).|Cysteine-rich tandem repeats.|IV.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	CGTTGCAGCGGCACCGGCCAC	0.657													17	19					0	0	1	0	0	
ITGB2	3689	broad.mit.edu	37	21	46321485	46321485	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:46321485G>A	uc002zgd.2	-	5	707	c.663C>T	c.(661-663)GTC>GTT	p.V221V	ITGB2_uc002zge.2_Silent_p.V221V|ITGB2_uc002zgf.3_Silent_p.V221V|ITGB2_uc011afl.1_Silent_p.V143V|ITGB2_uc010gpw.2_Silent_p.V164V|ITGB2_uc002zgg.2_Silent_p.V221V	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	221	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GCTGCTTCCCGACCTCGGTCT	0.622													36	54					0	0	1	0	0	
ADARB1	104	broad.mit.edu	37	21	46624478	46624478	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:46624478T>C	uc002zgy.2	+	10	2129	c.1694T>C	c.(1693-1695)GTG>GCG	p.V565A	ADARB1_uc002zgr.2_Missense_Mutation_p.V565A|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Missense_Mutation_p.V525A|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Missense_Mutation_p.V525A|ADARB1_uc010gpx.2_RNA|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	565	A to I editase.				adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		AGCTGGAACGTGGTGGGCATC	0.592													28	89					0	0	1	0	0	
COL18A1	80781	broad.mit.edu	37	21	46896386	46896386	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:46896386C>T	uc011afs.1	+	5	2186	c.2165C>T	c.(2164-2166)TCG>TTG	p.S722L	COL18A1_uc002zhg.2_Missense_Mutation_p.S307L|COL18A1_uc002zhi.2_Missense_Mutation_p.S487L	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	722	Nonhelical region 1 (NC1).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		ACGGTGGCTTCGTTAGGAGGT	0.383													3	11					0	0	1	0	0	
PCBP3	54039	broad.mit.edu	37	21	47359992	47359992	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:47359992C>T	uc002zhq.1	+	13	1083	c.958C>T	c.(958-960)CGA>TGA	p.R320*	PCBP3_uc002zhp.1_Nonsense_Mutation_p.R300*|PCBP3_uc002zhs.1_Nonsense_Mutation_p.R294*|PCBP3_uc002zhr.1_Nonsense_Mutation_p.R319*|PCBP3_uc002zht.1_Nonsense_Mutation_p.R310*	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	320	KH 3.				mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		CAATGAAATTCGACAGATGTC	0.537													32	54					0	0	1	0	0	
MCM3AP	8888	broad.mit.edu	37	21	47704119	47704119	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:47704119T>G	uc002zir.1	-	1	1118	c.1082A>C	c.(1081-1083)AAA>ACA	p.K361T	C21orf57_uc002zit.1_5'Flank|C21orf57_uc002ziu.1_5'Flank|C21orf57_uc002ziv.2_5'Flank|C21orf57_uc002ziw.2_5'Flank|C21orf57_uc002zix.2_5'Flank|C21orf57_uc010gqh.2_5'Flank|C21orf57_uc002ziy.2_5'Flank	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	361					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					AGTTTCCTTTTTGGCCTCCTT	0.507													55	136					0	0	1	0	0	
C21orf57	54059	broad.mit.edu	37	21	47706911	47706911	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:47706911G>A	uc002ziv.2	+	2	513	c.84G>A	c.(82-84)AGG>AGA	p.R28R	C21orf57_uc002zit.1_Silent_p.R28R|C21orf57_uc002ziu.1_Silent_p.R28R|C21orf57_uc002ziw.2_Intron|C21orf57_uc002zix.2_Silent_p.R28R|C21orf57_uc010gqh.2_Intron|C21orf57_uc002ziy.2_Silent_p.R28R|MCM3AP_uc002zir.1_5'Flank	NM_058181	NP_478061	P58557	YBEY_HUMAN	hypothetical protein LOC54059 isoform 1	28							metal ion binding|metalloendopeptidase activity				0	Breast(49;0.112)			Colorectal(79;0.236)		TTGTAAGGAGGATTTTAGGAG	0.423													28	40					0	0	1	0	0	
PCNT	5116	broad.mit.edu	37	21	47848442	47848442	+	Missense_Mutation	SNP	G	A	A	rs140173772		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr21:47848442G>A	uc002zji.3	+	35	7735	c.7628G>A	c.(7627-7629)CGC>CAC	p.R2543H	PCNT_uc002zjj.2_Missense_Mutation_p.R2425H	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	2543	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					CAGCACTTGCGCACGGCGCTG	0.697													9	16					0	0	1	0	0	
CCT8L2	150160	broad.mit.edu	37	22	17071789	17071789	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:17071789T>G	uc002zlp.1	-	1	1912	c.1652A>C	c.(1651-1653)AAA>ACA	p.K551T		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	551					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TCCAAGGATTTTTTTTGTTTC	0.408													36	99					0	0	1	0	0	
GAB4	128954	broad.mit.edu	37	22	17447013	17447013	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:17447013C>T	uc002zlw.2	-	6	1373	c.1265G>A	c.(1264-1266)CGC>CAC	p.R422H	GAB4_uc010gqs.1_3'UTR	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	422										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				CTTGAGGCTGCGGTTGACAGG	0.532													34	72					0	0	1	0	0	
GAB4	128954	broad.mit.edu	37	22	17447056	17447056	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:17447056C>A	uc002zlw.2	-	6	1330	c.1222G>T	c.(1222-1224)GAC>TAC	p.D408Y	GAB4_uc010gqs.1_3'UTR	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	408										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				TGGCTGAGGTCTTGGTGCATA	0.542													30	65					1.06801e-11	1.1736e-11	1	1	0	
CECR1	51816	broad.mit.edu	37	22	17662438	17662438	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:17662438T>G	uc002zmk.1	-	9	1683	c.1471A>C	c.(1471-1473)AAT>CAT	p.N491H	CECR1_uc010gqu.1_Missense_Mutation_p.N491H|CECR1_uc011agi.1_Missense_Mutation_p.N449H|CECR1_uc002zmj.1_Missense_Mutation_p.N250H	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	491					adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				ATGAAAGTATTTTTCTCACTC	0.527													76	157					0	0	1	0	0	
CECR1	51816	broad.mit.edu	37	22	17662442	17662442	+	Silent	SNP	C	T	T	rs61738625	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:17662442C>T	uc002zmk.1	-	9	1679	c.1467G>A	c.(1465-1467)GAG>GAA	p.E489E	CECR1_uc010gqu.1_Silent_p.E489E|CECR1_uc011agi.1_Silent_p.E447E|CECR1_uc002zmj.1_Silent_p.E248E	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	489					adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				AAGTATTTTTCTCACTCTCCA	0.527													74	147					0	0	1	0	0	
CECR2	27443	broad.mit.edu	37	22	17976436	17976436	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:17976436C>T	uc010gqw.1	+	2	223	c.97C>T	c.(97-99)CCT>TCT	p.P33S	CECR2_uc010gqv.1_5'UTR|CECR2_uc002zml.2_5'UTR|CECR2_uc002zmm.1_5'Flank	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	75					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CTGGTCTAGGCCTCAGACATT	0.483													14	28					0	0	1	0	0	
CECR2	27443	broad.mit.edu	37	22	18028975	18028975	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:18028975C>T	uc010gqw.1	+	16	4058	c.3932C>T	c.(3931-3933)TCA>TTA	p.S1311L	CECR2_uc010gqv.1_Missense_Mutation_p.S1169L|CECR2_uc002zml.2_Missense_Mutation_p.S1170L|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1353					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		GGATTTGGTTCATCTGCATTT	0.572													40	109					0	0	1	0	0	
MICAL3	57553	broad.mit.edu	37	22	18348745	18348745	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:18348745C>T	uc002zng.3	-	18	2815	c.2462G>A	c.(2461-2463)CGA>CAA	p.R821Q	MICAL3_uc011agl.1_Missense_Mutation_p.R821Q|MICAL3_uc002znh.2_Missense_Mutation_p.R821Q|MICAL3_uc002znj.1_Missense_Mutation_p.R549Q|MICAL3_uc002znk.1_Missense_Mutation_p.R821Q|MICAL3_uc002znl.1_Missense_Mutation_p.R454Q|MICAL3_uc002znm.2_Missense_Mutation_p.R322Q|MICAL3_uc010grf.2_Missense_Mutation_p.R945Q	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	821	LIM zinc-binding.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GCCAGAGAGTCGATAGCAGTA	0.562													10	31					0	0	1	0	0	
DGCR2	9993	broad.mit.edu	37	22	19026632	19026632	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:19026632C>T	uc002zoq.1	-	10	1647	c.1399G>A	c.(1399-1401)GAT>AAT	p.D467N	DGCR2_uc002zor.1_Missense_Mutation_p.D243N|DGCR2_uc011agr.1_Missense_Mutation_p.D423N	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	467	Cytoplasmic (Potential).				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					AAAGCATCATCGTCTGCAGGA	0.627													19	30					0	0	1	0	0	
CLTCL1	8218	broad.mit.edu	37	22	19170998	19170998	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:19170998G>A	uc002zpb.2	-	31	4807	c.4732C>T	c.(4732-4734)CGC>TGC	p.R1578C	CLTCL1_uc011agv.1_Missense_Mutation_p.R1521C|CLTCL1_uc011agw.1_Missense_Mutation_p.R1557C|CLTCL1_uc011agt.1_Missense_Mutation_p.R369C|CLTCL1_uc011agu.1_Missense_Mutation_p.R275C	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1578	Proximal segment.|Trimerization (By similarity).|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					ATGTCTGGGCGAAGCAGGTCA	0.587			T	?	ALCL								21	38					0	0	1	0	0	
CLTCL1	8218	broad.mit.edu	37	22	19203720	19203720	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:19203720G>A	uc002zpb.2	-	19	3041	c.2966C>T	c.(2965-2967)TCG>TTG	p.S989L	CLTCL1_uc011agv.1_Missense_Mutation_p.S989L|CLTCL1_uc011agw.1_Missense_Mutation_p.S989L|CLTCL1_uc002zpe.2_5'Flank|CLTCL1_uc002zpd.1_5'Flank	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	989	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					GACAGTGACCGAAATCTCTTC	0.423			T	?	ALCL								15	42					0	0	1	0	0	
CLTCL1	8218	broad.mit.edu	37	22	19211552	19211552	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:19211552G>A	uc002zpb.2	-	14	2229	c.2154C>T	c.(2152-2154)ATC>ATT	p.I718I	CLTCL1_uc011agv.1_Silent_p.I718I|CLTCL1_uc011agw.1_Silent_p.I718I	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	718	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					TGAAGTTCACGATTGAGCCCA	0.517			T	?	ALCL								19	20					0	0	1	0	0	
CLTCL1	8218	broad.mit.edu	37	22	19221116	19221116	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:19221116C>T	uc002zpb.2	-	8	1272	c.1197G>A	c.(1195-1197)CAG>CAA	p.Q399Q	CLTCL1_uc011agv.1_Silent_p.Q399Q|CLTCL1_uc011agw.1_Silent_p.Q399Q	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	399	Globular terminal domain.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					TCTGGAATTTCTGGACCGTCT	0.463			T	?	ALCL								9	59					0	0	1	0	0	
CLDN5	7122	broad.mit.edu	37	22	19511134	19511134	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:19511134C>A	uc002zpu.2	-	2	1115	c.900G>T	c.(898-900)AAG>AAT	p.K300N	CLDN5_uc010grr.2_Missense_Mutation_p.K300N	NM_003277	NP_003268	O00501	CLD5_HUMAN	claudin 5	215	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0	Colorectal(54;0.0993)					AGACGTAGTTCTTCTTGTCGT	0.721													4	38					0.184627	0.184943	1	1	0	
RIMBP3	85376	broad.mit.edu	37	22	20458539	20458539	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:20458539C>T	uc002zsd.3	-	1	3248	c.2763G>A	c.(2761-2763)GGG>GGA	p.G921G		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			CTTCATCCTGCCCCGCTGGGA	0.597													14	30					0	0	1	0	0	
ZNF74	7625	broad.mit.edu	37	22	20761251	20761251	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:20761251G>A	uc010gsm.2	+	6	2140	c.1928G>A	c.(1927-1929)CGA>CAA	p.R643Q	ZNF74_uc002zsg.2_Missense_Mutation_p.R572Q|ZNF74_uc002zsh.2_Missense_Mutation_p.R643Q|ZNF74_uc002zsi.2_Missense_Mutation_p.R572Q|ZNF74_uc010gsn.2_Missense_Mutation_p.R572Q	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	643					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			AGCAAACCTCGAAACTAACAT	0.547													14	20					0	0	1	0	0	
PI4KA	5297	broad.mit.edu	37	22	21075682	21075682	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:21075682G>A	uc002zsz.3	-	43	5077	c.4846C>T	c.(4846-4848)CTG>TTG	p.L1616L	PI4KA_uc010gsp.2_Silent_p.L9L|PI4KA_uc002zsy.3_Silent_p.L426L	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1616					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			GCTGCCCACAGAATATACTCC	0.542													45	84					0	0	1	0	0	
SERPIND1	3053	broad.mit.edu	37	22	21133888	21133888	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:21133888C>T	uc002ztb.1	+	2	355	c.288C>T	c.(286-288)GTC>GTT	p.V96V	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Silent_p.V124V	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	96	2 X 11 AA approximate repeats, Asp/Glu- rich (acidic) (hirudin-like).|2.				blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	TCGACATCGTCGACAGTCTGT	0.527													42	41					0	0	1	0	0	
CRKL	1399	broad.mit.edu	37	22	21288167	21288167	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:21288167G>T	uc002ztf.2	+	2	921	c.412G>T	c.(412-414)GAT>TAT	p.D138Y	CRKL_uc002ztg.1_RNA	NM_005207	NP_005198	P46109	CRKL_HUMAN	v-crk sarcoma virus CT10 oncogene homolog	138	SH3 1.				JNK cascade|Ras protein signal transduction	cytosol	protein tyrosine kinase activity|SH3/SH2 adaptor activity|signal transducer activity				0	all_cancers(11;1.16e-25)|all_epithelial(7;3.37e-24)|Lung NSC(8;7.25e-16)|all_lung(8;1.37e-14)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.176)			TCCTGGGAATGATGCCGAAGA	0.502													60	89					3.84483e-29	4.68494e-29	1	1	0	
AIFM3	150209	broad.mit.edu	37	22	21327599	21327599	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:21327599A>C	uc002ztj.2	+	3	253	c.35A>C	c.(34-36)GAG>GCG	p.E12A	AIFM3_uc002ztk.2_Missense_Mutation_p.E12A|AIFM3_uc002ztl.2_Missense_Mutation_p.E18A|AIFM3_uc011ahx.1_Missense_Mutation_p.S37R|AIFM3_uc002ztm.1_5'Flank	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,	12					activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			CCCACAGTGGAGCTCAAGATC	0.672													5	12					0	0	1	0	0	
P2RX6	9127	broad.mit.edu	37	22	21372283	21372283	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:21372283G>T	uc010gsu.1	+	3	321	c.321G>T	c.(319-321)GAG>GAT	p.E107D	P2RX6_uc002ztz.2_Missense_Mutation_p.E81D|P2RX6_uc010gst.1_3'UTR|P2RX6_uc002zua.2_Intron|P2RX6_uc002zuc.1_RNA	NM_005446	NP_005437	O15547	P2RX6_HUMAN	purinergic receptor P2X6 isoform 1	107	Extracellular (Potential).				muscle contraction|protein homooligomerization	cell junction|cytoplasm|integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0						CCTAGGGAGAGAACGTGTTCT	0.587													5	11					3.59834e-05	3.69903e-05	1	1	0	
CCDC116	164592	broad.mit.edu	37	22	21989197	21989197	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:21989197A>C	uc002zve.2	+	4	938	c.845A>C	c.(844-846)CAG>CCG	p.Q282P	CCDC116_uc011aih.1_Missense_Mutation_p.Q282P	NM_152612	NP_689825	Q8IYX3	CC116_HUMAN	coiled-coil domain containing 116	282										ovary(1)|skin(1)	2	Colorectal(54;0.105)					TTACTGAGCCAGCTGGAGTCC	0.597													52	84					0	0	1	0	0	
LOC96610	96610	broad.mit.edu	37	22	22749745	22749745	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:22749745G>A	uc011aim.1	+	49		c.5742G>A								Parts of antibodies, mostly variable regions.												0						CTCCTTGGGGGCAAAGCTGCC	0.552													25	63					0	0	1	0	0	
LOC96610	96610	broad.mit.edu	37	22	22786594	22786594	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:22786594C>T	uc011aim.1	+	67		c.6777C>T								Parts of antibodies, mostly variable regions.												0						GCTCCAACATCGGAAATAATG	0.562											OREG0026362	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	61	101					0	0	1	0	0	
ZNF280B	140883	broad.mit.edu	37	22	22842885	22842885	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:22842885T>C	uc002zwc.1	-	4	1615	c.839A>G	c.(838-840)AAT>AGT	p.N280S	LOC96610_uc011aim.1_Intron	NM_080764	NP_542942	Q86YH2	Z280B_HUMAN	zinc finger protein 280B	280					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		CACAATGGGATTTTCTTTCTT	0.393													36	64					0	0	1	0	0	
PRAME	23532	broad.mit.edu	37	22	22892500	22892500	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:22892500G>A	uc002zwf.2	-	4	757	c.601C>T	c.(601-603)CGA>TGA	p.R201*	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Nonsense_Mutation_p.R185*|PRAME_uc010gtr.2_Nonsense_Mutation_p.R201*|PRAME_uc002zwg.2_Nonsense_Mutation_p.R201*|PRAME_uc002zwh.2_Nonsense_Mutation_p.R201*|PRAME_uc002zwi.2_Nonsense_Mutation_p.R201*|PRAME_uc002zwj.2_Nonsense_Mutation_p.R201*|PRAME_uc002zwk.2_Nonsense_Mutation_p.R201*	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	201					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		TTTTTCTTTCGCTTCACTTTC	0.468													47	109					0	0	1	0	0	
LOC96610	96610	broad.mit.edu	37	22	23029638	23029638	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:23029638C>T	uc011aim.1	+	128		c.8277C>T								Parts of antibodies, mostly variable regions.												0						CTGAGCGATTCTCTGGCTCCA	0.522													27	60					0	0	1	0	0	
LOC96610	96610	broad.mit.edu	37	22	23055532	23055532	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:23055532C>T	uc011aim.1	+	153		c.9247C>T								Parts of antibodies, mostly variable regions.												0						CTGTGCTGGTCGTCTATGATG	0.597													29	29					0	0	1	0	0	
LOC96610	96610	broad.mit.edu	37	22	23154619	23154619	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:23154619T>C	uc011aim.1	+	271		c.12511T>C								Parts of antibodies, mostly variable regions.												0						CAGGCCCCTGTGCTGGTCATC	0.552													41	61					0	0	1	0	0	
BCR	613	broad.mit.edu	37	22	23613760	23613760	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:23613760G>A	uc002zww.2	+	6	2498	c.1902G>A	c.(1900-1902)ACG>ACA	p.T634T	BCR_uc002zwx.2_Silent_p.T634T|BCR_uc011aiy.1_Silent_p.T223T|BCR_uc010gtx.1_Silent_p.T101T	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	634	DH.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						AGGATCCAACGACCAAGAACT	0.527			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								20	36					0	0	1	0	0	
CABIN1	23523	broad.mit.edu	37	22	24456571	24456571	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:24456571G>A	uc002zzi.1	+	12	1711	c.1584G>A	c.(1582-1584)CCG>CCA	p.P528P	CABIN1_uc002zzj.1_Silent_p.P478P|CABIN1_uc002zzl.1_Silent_p.P528P	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	528					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TGCCCAACCCGCTGCTGAGGG	0.607													25	47					0	0	1	0	0	
CABIN1	23523	broad.mit.edu	37	22	24468452	24468452	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:24468452C>T	uc002zzi.1	+	18	2751	c.2624C>T	c.(2623-2625)GCG>GTG	p.A875V	CABIN1_uc002zzj.1_Missense_Mutation_p.A825V|CABIN1_uc002zzl.1_Missense_Mutation_p.A875V	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	875					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CAAAACCCAGCGGAGGAAGGT	0.582													14	53					0	0	1	0	0	
CABIN1	23523	broad.mit.edu	37	22	24472128	24472128	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:24472128G>A	uc002zzi.1	+	19	2770	c.2643G>A	c.(2641-2643)GAG>GAA	p.E881E	CABIN1_uc002zzj.1_Silent_p.E831E|CABIN1_uc002zzl.1_Silent_p.E881E	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	881					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GGATGTCAGAGACGCCCATGC	0.597													16	30					0	0	1	0	0	
GGT5	2687	broad.mit.edu	37	22	24616052	24616052	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:24616052C>A	uc002zzo.3	-	12	2064	c.1647G>T	c.(1645-1647)CAG>CAT	p.Q549H	GGT5_uc002zzp.3_Missense_Mutation_p.Q550H|GGT5_uc002zzr.3_Missense_Mutation_p.Q517H|GGT5_uc002zzq.3_3'UTR|GGT5_uc011ajm.1_Missense_Mutation_p.Q473H	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	549	Extracellular (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						GGGTCTGGTTCTGGCCACGGT	0.642													18	28					5.3912e-06	5.59047e-06	1	1	0	
ADORA2A	135	broad.mit.edu	37	22	24837105	24837105	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:24837105G>A	uc002zzx.2	+	5	1650	c.887G>A	c.(886-888)CGC>CAC	p.R296H	ADORA2A_uc002zzy.3_Missense_Mutation_p.R296H|ADORA2A_uc011ajs.1_Missense_Mutation_p.R157H|ADORA2A_uc010gup.2_Missense_Mutation_p.R296H|ADORA2A_uc010guq.2_Missense_Mutation_p.R296H|ADORA2A_uc003aab.2_Missense_Mutation_p.R296H|ADORA2A_uc003aac.2_Missense_Mutation_p.R157H|C22orf45_uc003aad.1_Intron	NM_000675	NP_000666	P29274	AA2AR_HUMAN	adenosine A2a receptor	296	Cytoplasmic.				apoptosis|blood coagulation|cAMP biosynthetic process|cellular defense response|inflammatory response|nerve growth factor receptor signaling pathway|phagocytosis|sensory perception	integral to plasma membrane|membrane fraction	enzyme binding				0	Colorectal(2;0.196)				Caffeine(DB00201)|Defibrotide(DB04932)|Pegademase bovine(DB00061)|Theophylline(DB00277)	CGCGAGTTCCGCCAGACCTTC	0.592													27	43					0	0	1	0	0	
SGSM1	129049	broad.mit.edu	37	22	25240909	25240909	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:25240909G>A	uc003abg.2	+	3	266	c.109G>A	c.(109-111)GAA>AAA	p.E37K	SGSM1_uc003abh.2_Missense_Mutation_p.E37K|SGSM1_uc010guu.1_Missense_Mutation_p.E37K|SGSM1_uc003abj.2_Missense_Mutation_p.E37K|SGSM1_uc003abi.1_Missense_Mutation_p.E12K|SGSM1_uc003abf.2_Missense_Mutation_p.E37K	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	37	RUN.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GTTTGTCCACGAAGACAGCAG	0.567													23	37					0	0	1	0	0	
SGSM1	129049	broad.mit.edu	37	22	25282634	25282634	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:25282634C>T	uc003abg.2	+	17	2031	c.1874C>T	c.(1873-1875)GCC>GTC	p.A625V	SGSM1_uc003abh.2_Missense_Mutation_p.A625V|SGSM1_uc010guu.1_Missense_Mutation_p.A570V|SGSM1_uc003abj.2_Missense_Mutation_p.A570V|SGSM1_uc003abi.1_Missense_Mutation_p.A545V	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	625	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						ATCCGCAAGGCCGTGTGGCCC	0.582													4	4					0	0	1	0	0	
MYO18B	84700	broad.mit.edu	37	22	26159197	26159197	+	Splice_Site	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:26159197G>T	uc003abz.1	+	3	290	c.40_splice	c.e3-1	p.I14_splice	MYO18B_uc003aca.1_5'Flank|MYO18B_uc010guy.1_5'Flank|MYO18B_uc010guz.1_5'Flank|MYO18B_uc011aka.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB							nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CTGCAAAACAGATTCGGGAAG	0.562													9	19					0.000274275	0.000279565	1	1	0	
SEZ6L	23544	broad.mit.edu	37	22	26747069	26747069	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:26747069C>T	uc003acb.2	+	12	2615	c.2459C>T	c.(2458-2460)TCG>TTG	p.S820L	SEZ6L_uc003acc.2_Missense_Mutation_p.S820L|SEZ6L_uc011akc.1_Missense_Mutation_p.S820L|SEZ6L_uc003acd.2_Intron|SEZ6L_uc011akd.1_Missense_Mutation_p.S820L|SEZ6L_uc003ace.2_Missense_Mutation_p.S820L|SEZ6L_uc003acf.1_Missense_Mutation_p.S593L|SEZ6L_uc010gvc.1_Missense_Mutation_p.S593L|SEZ6L_uc011ake.1_RNA	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	820	Sushi 4.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CGCTTAATTTCGGATCCTGTG	0.547													38	69					0	0	1	0	0	
SEZ6L	23544	broad.mit.edu	37	22	26747191	26747191	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:26747191C>T	uc003acb.2	+	12	2737	c.2581C>T	c.(2581-2583)CGC>TGC	p.R861C	SEZ6L_uc003acc.2_Missense_Mutation_p.R861C|SEZ6L_uc011akc.1_Missense_Mutation_p.R861C|SEZ6L_uc003acd.2_Intron|SEZ6L_uc011akd.1_Missense_Mutation_p.R861C|SEZ6L_uc003ace.2_Missense_Mutation_p.R861C|SEZ6L_uc003acf.1_Missense_Mutation_p.R634C|SEZ6L_uc010gvc.1_Missense_Mutation_p.R634C|SEZ6L_uc011ake.1_RNA	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	861	Sushi 4.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CTGGACGTCTCGCCTGCCCCA	0.532													30	61					0	0	1	0	0	
CCDC117	150275	broad.mit.edu	37	22	29177000	29177000	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:29177000C>A	uc003aeb.2	+	3	480	c.304C>A	c.(304-306)CTT>ATT	p.L102I	CCDC117_uc011aki.1_Missense_Mutation_p.L84I|CCDC117_uc011akj.1_Intron|CCDC117_uc011akk.1_5'UTR	NM_173510	NP_775781	Q8IWD4	CC117_HUMAN	coiled-coil domain containing 117	102				L -> P (in Ref. 2; BAC03592).						breast(1)	1						TGACTGGATTCTTTGTGCACA	0.388													16	37					4.75885e-15	5.40475e-15	1	1	0	
AP1B1	162	broad.mit.edu	37	22	29754901	29754901	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:29754901G>A	uc003afj.2	-	5	523	c.339C>T	c.(337-339)ATC>ATT	p.I113I	AP1B1_uc003afi.2_Silent_p.I113I|AP1B1_uc003afk.2_Silent_p.I113I|AP1B1_uc003afl.2_Silent_p.I113I	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	113					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						TGTCAACGCGGATGCAGCCCA	0.632													7	14					0	0	1	0	0	
THOC5	8563	broad.mit.edu	37	22	29908111	29908111	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:29908111C>T	uc003afr.2	-	19	2031	c.1696G>A	c.(1696-1698)GCT>ACT	p.A566T	THOC5_uc003afq.2_Missense_Mutation_p.A227T|THOC5_uc003afs.2_Missense_Mutation_p.A566T|THOC5_uc003aft.2_Missense_Mutation_p.A566T|THOC5_uc003afu.2_Missense_Mutation_p.A566T|THOC5_uc010gvo.2_Missense_Mutation_p.A310T	NM_001002878	NP_001002878	Q13769	THOC5_HUMAN	THO complex 5	566					intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			breast(3)	3						AACACCACAGCGGCCTGCAGT	0.557													16	36					0	0	1	0	0	
MTMR3	8897	broad.mit.edu	37	22	30374969	30374969	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:30374969C>T	uc003agv.3	+	5	466	c.138C>T	c.(136-138)GGC>GGT	p.G46G	MTMR3_uc003agu.3_Silent_p.G46G|MTMR3_uc003agw.3_Silent_p.G46G	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	46					phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			AGTTTGTGGGCCGTGCCGAGG	0.423													30	56					0	0	1	0	0	
SEC14L4	284904	broad.mit.edu	37	22	30891949	30891949	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:30891949A>C	uc003aid.2	-	3	240	c.140T>G	c.(139-141)TTT>TGT	p.F47C	SEC14L4_uc011akz.1_Missense_Mutation_p.F47C|SEC14L4_uc003aie.2_Missense_Mutation_p.L16V|SEC14L4_uc003aif.2_5'UTR	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	47						integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	CTGCAGGTCAAAGTTTCGAGC	0.498													13	27					0	0	1	0	0	
SMTN	6525	broad.mit.edu	37	22	31484584	31484584	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:31484584A>G	uc003ajl.1	+	4	504	c.286A>G	c.(286-288)ACT>GCT	p.T96A	SMTN_uc003ajk.1_Missense_Mutation_p.T96A|SMTN_uc003ajm.1_Missense_Mutation_p.T96A|SMTN_uc011ale.1_Missense_Mutation_p.T150A|SMTN_uc011alf.1_Missense_Mutation_p.T152A|SMTN_uc003ajn.1_Missense_Mutation_p.T88A|SMTN_uc011alg.1_5'Flank	NM_006932	NP_008863	P53814	SMTN_HUMAN	smoothelin isoform c	96					muscle organ development|smooth muscle contraction	actin cytoskeleton|cytoplasm	actin binding|structural constituent of muscle			large_intestine(2)|pancreas(1)	3						GGAGGAATTGACTGCACTGGT	0.642													23	49					0	0	1	0	0	
INPP5J	27124	broad.mit.edu	37	22	31521798	31521798	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:31521798G>A	uc003aju.3	+	2	1165	c.1073G>A	c.(1072-1074)CGC>CAC	p.R358H	INPP5J_uc010gwf.2_Missense_Mutation_p.R358H|INPP5J_uc003ajv.3_Intron|INPP5J_uc003ajs.3_Intron|INPP5J_uc011alk.1_Missense_Mutation_p.R291H|INPP5J_uc010gwg.2_Intron|INPP5J_uc003ajw.2_Intron|INPP5J_uc003ajt.3_Intron|INPP5J_uc003ajx.2_5'Flank|INPP5J_uc003ajy.2_5'Flank|INPP5J_uc003ajz.2_5'Flank	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	358	Pro-rich.					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						TCCCCGAATCGCTCTCCCTGT	0.682													4	11					0	0	1	0	0	
PIK3IP1	113791	broad.mit.edu	37	22	31685536	31685536	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:31685536T>G	uc003akm.2	-	4	647	c.457A>C	c.(457-459)AGC>CGC	p.S153R	PIK3IP1_uc003akl.2_RNA|PIK3IP1_uc011alo.1_Missense_Mutation_p.S153R|PIK3IP1_uc003akn.2_Missense_Mutation_p.S133R|PIK3IP1_uc003ako.2_Missense_Mutation_p.S153R	NM_052880	NP_443112	Q96FE7	P3IP1_HUMAN	HGFL protein isoform 1	153	Extracellular (Potential).					integral to membrane				ovary(1)	1						ACCCGCTGGCTGATCCCAATC	0.612													3	2					0	0	1	0	0	
EIF4ENIF1	56478	broad.mit.edu	37	22	31884627	31884627	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:31884627G>A	uc003akz.1	-	2	242	c.78C>T	c.(76-78)TGC>TGT	p.C26C	EIF4ENIF1_uc003ala.1_Silent_p.C26C|EIF4ENIF1_uc003alb.1_Silent_p.C26C|EIF4ENIF1_uc003alc.1_Silent_p.C26C	NM_019843	NP_062817	Q9NRA8	4ET_HUMAN	eukaryotic translation initiation factor 4E	26						nucleus	protein binding|protein transporter activity			ovary(1)	1						AGCGATGGGGGCATTTGGAGG	0.408													29	47					0	0	1	0	0	
SFI1	9814	broad.mit.edu	37	22	31998258	31998258	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:31998258A>C	uc003ale.2	+	16	1998	c.1605A>C	c.(1603-1605)GAA>GAC	p.E535D	SFI1_uc003ald.1_Missense_Mutation_p.E511D|SFI1_uc003alf.2_Missense_Mutation_p.E504D|SFI1_uc003alg.2_Missense_Mutation_p.E453D|SFI1_uc011alp.1_Missense_Mutation_p.E453D|SFI1_uc011alq.1_Missense_Mutation_p.E480D|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	535					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						AGCATCGAGAAAACCGCCTGG	0.468													22	70					0	0	1	0	0	
YWHAH	7533	broad.mit.edu	37	22	32352264	32352264	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:32352264G>A	uc003alz.2	+	2	467	c.226G>A	c.(226-228)GAA>AAA	p.E76K	YWHAH_uc010gwl.2_Missense_Mutation_p.E6K|YWHAH_uc003ama.2_Missense_Mutation_p.E6K|YWHAH_uc010gwm.2_Missense_Mutation_p.E63K	NM_003405	NP_003396	Q04917	1433F_HUMAN	tyrosine 3-monooxygenase/tryptophan	76					glucocorticoid catabolic process|glucocorticoid receptor signaling pathway|intracellular protein transport|negative regulation of dendrite morphogenesis|positive regulation of transcription, DNA-dependent|regulation of synaptic plasticity	cytoplasm	enzyme binding|glucocorticoid receptor binding|insulin-like growth factor receptor binding|protein domain specific binding			central_nervous_system(1)	1						TGATGGAAACGAAAAGAAATT	0.463													21	39					0	0	1	0	0	
RFPL3	10738	broad.mit.edu	37	22	32754255	32754255	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:32754255C>T	uc003amj.2	+	1	402	c.197C>T	c.(196-198)TCG>TTG	p.S66L	RFPL3_uc010gwn.2_Missense_Mutation_p.S37L	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	66	RING-type.						zinc ion binding			ovary(1)	1						TGCATCAATTCGCTGCAGAAG	0.537													27	74					0	0	1	0	0	
SYN3	8224	broad.mit.edu	37	22	32937665	32937665	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:32937665A>G	uc003amx.2	-	7	968	c.809T>C	c.(808-810)ATC>ACC	p.I270T	SYN3_uc003amy.2_Missense_Mutation_p.I270T|SYN3_uc003amz.2_Missense_Mutation_p.I269T	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	270	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						CACGCTGGTGATGTCCTGGAA	0.557													14	30					0	0	1	0	0	
SYN3	8224	broad.mit.edu	37	22	33376685	33376685	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:33376685G>A	uc003amx.2	-	2	473	c.314C>T	c.(313-315)TCG>TTG	p.S105L	SYN3_uc003amy.2_Missense_Mutation_p.S105L|SYN3_uc003amz.2_Missense_Mutation_p.S105L	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	105	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						GAAATACTTCGACCTGTAAAG	0.478													75	144					0	0	1	0	0	
TOM1	10043	broad.mit.edu	37	22	35719555	35719555	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:35719555C>T	uc003ann.2	+	5	558	c.433C>T	c.(433-435)CGG>TGG	p.R145W	TOM1_uc011ami.1_Missense_Mutation_p.R112W|TOM1_uc011amj.1_5'UTR|TOM1_uc003ans.2_5'UTR|TOM1_uc011amk.1_Missense_Mutation_p.R107W|TOM1_uc003anp.2_Missense_Mutation_p.R145W|TOM1_uc011aml.1_Intron|TOM1_uc003ano.2_RNA|TOM1_uc003anq.2_Missense_Mutation_p.R139W|TOM1_uc003anr.2_5'UTR	NM_005488	NP_005479	O60784	TOM1_HUMAN	target of myb1 isoform 1	145	VHS.				endocytosis|endosome transport|intracellular protein transport	cytosol|early endosome|membrane	protein binding			ovary(1)	1						TGAGGACCTGCGGAGGAAAGG	0.612													35	71					0	0	1	0	0	
MCM5	4174	broad.mit.edu	37	22	35808654	35808654	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:35808654C>A	uc003anu.3	+	8	1165	c.1071C>A	c.(1069-1071)CTC>CTA	p.L357L	MCM5_uc010gwr.2_Silent_p.L166L|MCM5_uc003anv.3_Silent_p.L314L|MCM5_uc010gws.1_RNA|MCM5_uc003anw.1_Silent_p.L141L	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	357	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						CCTGCCTGCTCTTTGGGGGCT	0.562													27	39					2.41591e-17	2.79654e-17	1	1	0	
MYH9	4627	broad.mit.edu	37	22	36745002	36745002	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:36745002C>T	uc003apg.2	-	2	511	c.280G>A	c.(280-282)GAA>AAA	p.E94K	MYH9_uc003api.1_Missense_Mutation_p.E94K	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	94	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						ACCGAGGCTTCGTTGAGGCAC	0.577			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				21	38					0	0	1	0	0	
CACNG2	10369	broad.mit.edu	37	22	36983540	36983540	+	Silent	SNP	G	A	A	rs148787239	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:36983540G>A	uc003aps.1	-	2	549	c.267C>T	c.(265-267)TAC>TAT	p.Y89Y		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	89					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						TGTCAGCTTCGTAATCTGCAT	0.473													52	67					0	0	1	0	0	
CSF2RB	1439	broad.mit.edu	37	22	37318260	37318260	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:37318260C>T	uc003aqa.3	+	2	228	c.11C>T	c.(10-12)GCC>GTC	p.A4V	CSF2RB_uc003aqc.3_Missense_Mutation_p.A4V	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	4					respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	ATGGTGCTGGCCCAGGGGCTG	0.667													5	8					0	0	1	0	0	
TMPRSS6	164656	broad.mit.edu	37	22	37499365	37499365	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:37499365A>G	uc003aqs.1	-	2	234	c.120T>C	c.(118-120)TGT>TGC	p.C40C	TMPRSS6_uc003aqt.1_Silent_p.C31C|TMPRSS6_uc003aqu.2_Silent_p.C31C	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	40	Cytoplasmic (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						TGGAGTCCTCACAGGCCTTGA	0.692													38	90					0	0	1	0	0	
IL2RB	3560	broad.mit.edu	37	22	37533707	37533707	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:37533707C>T	uc003aqv.1	-	6	588	c.457G>A	c.(457-459)GAA>AAA	p.E153K		NM_000878	NP_000869	P14784	IL2RB_HUMAN	interleukin 2 receptor beta precursor	153	Extracellular (Potential).|Fibronectin type-III.				interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity				0					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	TGGGAGATTTCCCAGCTTATG	0.572													31	48					0	0	1	0	0	
ELFN2	114794	broad.mit.edu	37	22	37769204	37769204	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:37769204C>T	uc003asq.3	-	3	3157	c.2371G>A	c.(2371-2373)GCC>ACC	p.A791T		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	791	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TTGCGCAGGGCGTGACCGGCG	0.627													18	60					0	0	1	0	0	
ELFN2	114794	broad.mit.edu	37	22	37769767	37769767	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:37769767G>A	uc003asq.3	-	3	2594	c.1808C>T	c.(1807-1809)TCG>TTG	p.S603L		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	603	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					GTAGGGAGGCGAAAGGAAGCT	0.706													7	6					0	0	1	0	0	
TRIOBP	11078	broad.mit.edu	37	22	38097437	38097437	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:38097437G>A	uc003atr.2	+	3	336	c.65G>A	c.(64-66)CGC>CAC	p.R22H	TRIOBP_uc003atu.2_5'UTR|TRIOBP_uc003atq.1_Missense_Mutation_p.R22H|TRIOBP_uc003ats.1_5'UTR	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	22					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					ACCCAGAACCGCTGTCAAAAC	0.567													5	22					0	0	1	0	0	
ANKRD54	129138	broad.mit.edu	37	22	38228656	38228656	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:38228656A>G	uc003auc.2	-	7	874	c.816T>C	c.(814-816)AGT>AGC	p.S272S	ANKRD54_uc003aud.2_Silent_p.S149S	NM_138797	NP_620152	Q6NXT1	ANR54_HUMAN	ankyrin repeat domain 54	272											0	Melanoma(58;0.045)					GCTCTTTGGTACTGGTCATCT	0.612													22	52					0	0	1	0	0	
CSNK1E	1454	broad.mit.edu	37	22	38696819	38696819	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:38696819C>T	uc003avj.2	-	5	736	c.475G>A	c.(475-477)GCC>ACC	p.A159T	CSNK1E_uc003avk.2_Missense_Mutation_p.A159T|CSNK1E_uc003avl.1_RNA|CSNK1E_uc003avm.1_Missense_Mutation_p.A159T|CSNK1E_uc003avo.2_Missense_Mutation_p.A159T|CSNK1E_uc003avp.1_Missense_Mutation_p.A159T|CSNK1E_uc003avq.1_Missense_Mutation_p.A159T	NM_152221	NP_689407	P49674	KC1E_HUMAN	casein kinase 1 epsilon	159	Protein kinase.				DNA repair|G2/M transition of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|signal transduction	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Melanoma(58;0.045)					TGGGTGCGGGCGTCCCGGTAC	0.622													54	63					0	0	1	0	0	
DDX17	10521	broad.mit.edu	37	22	38882012	38882012	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:38882012C>A	uc003avy.3	-	13	2227	c.2124G>T	c.(2122-2124)ATG>ATT	p.M708I	DDX17_uc003avw.3_Missense_Mutation_p.M160I|DDX17_uc010gxp.2_Missense_Mutation_p.M158I|DDX17_uc003avx.3_Missense_Mutation_p.M706I	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	627					RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					TGTAACCTATCATATTGGTAG	0.453													50	109					6.3008e-33	7.7374e-33	1	1	0	
SMCR7L	54471	broad.mit.edu	37	22	39908025	39908025	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:39908025G>A	uc003axx.2	+	4	814	c.316G>A	c.(316-318)GAC>AAC	p.D106N	SMCR7L_uc003axw.2_Missense_Mutation_p.D106N|SMCR7L_uc010gxz.1_5'UTR|SMCR7L_uc003axy.2_5'UTR	NM_019008	NP_061881	Q9NQG6	SMC7L_HUMAN	hypothetical protein LOC54471	106						integral to membrane|mitochondrion				central_nervous_system(1)	1	Melanoma(58;0.04)					CTCCACCTTCGACACAGGTGA	0.473													28	73					0	0	1	0	0	
CACNA1I	8911	broad.mit.edu	37	22	40055521	40055521	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:40055521A>G	uc003ayc.2	+	13	2414	c.2414A>G	c.(2413-2415)GAC>GGC	p.D805G	CACNA1I_uc003ayd.2_Missense_Mutation_p.D770G|CACNA1I_uc003aye.2_Missense_Mutation_p.D720G|CACNA1I_uc003ayf.2_Missense_Mutation_p.D685G	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	805	Extracellular (Potential).|II.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	AAGAACTTCGACTCCCTGCTG	0.592													5	19					0	0	1	0	0	
GRAP2	9402	broad.mit.edu	37	22	40365499	40365499	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:40365499C>T	uc003ayh.1	+	7	1038	c.775C>T	c.(775-777)CGG>TGG	p.R259W	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Missense_Mutation_p.R233W|GRAP2_uc011aon.1_Missense_Mutation_p.R193W|GRAP2_uc010gya.1_Missense_Mutation_p.R259W|GRAP2_uc011aoo.1_Missense_Mutation_p.R187W|GRAP2_uc011aop.1_Missense_Mutation_p.R219W|GRAP2_uc011aoq.1_Missense_Mutation_p.R146W|GRAP2_uc003ayj.1_Missense_Mutation_p.R259W	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	259					cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						CCTCATGCATCGGAGACACAC	0.567													29	47					0	0	1	0	0	
TNRC6B	23112	broad.mit.edu	37	22	40661898	40661898	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:40661898C>T	uc011aor.1	+	5	1875	c.1664C>T	c.(1663-1665)GCT>GTT	p.A555V	TNRC6B_uc003aym.2_Intron|TNRC6B_uc003ayn.3_Missense_Mutation_p.A555V|TNRC6B_uc003ayo.2_Missense_Mutation_p.A359V	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	555					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						AATGCCCAGGCTCCCTGTTGG	0.507													9	87					0	0	1	0	0	
TNRC6B	23112	broad.mit.edu	37	22	40662421	40662421	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:40662421T>G	uc011aor.1	+	5	2398	c.2187T>G	c.(2185-2187)GAT>GAG	p.D729E	TNRC6B_uc003aym.2_Intron|TNRC6B_uc003ayn.3_Missense_Mutation_p.D729E|TNRC6B_uc003ayo.2_Missense_Mutation_p.D533E	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	729					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CCAGCAAGGATCAGGGGTGGG	0.507													9	30					0	0	1	0	0	
SGSM3	27352	broad.mit.edu	37	22	40802123	40802123	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:40802123G>A	uc003ayu.1	+	9	1065	c.856G>A	c.(856-858)GCC>ACC	p.A286T	SGSM3_uc010gyc.1_Missense_Mutation_p.A286T|SGSM3_uc011aos.1_Missense_Mutation_p.A219T|SGSM3_uc011aot.1_Missense_Mutation_p.A223T|SGSM3_uc010gyd.1_Missense_Mutation_p.A286T	NM_015705	NP_056520	Q96HU1	SGSM3_HUMAN	small G protein signaling modulator 3	286	Rab-GAP TBC.				cell cycle arrest|Rap protein signal transduction	cytoplasm	Rab GTPase activator activity|Rab GTPase binding			ovary(2)	2						CACGGCCTTCGCCAGCGTGGT	0.617													44	61					0	0	1	0	0	
SGSM3	27352	broad.mit.edu	37	22	40805350	40805350	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:40805350C>T	uc003ayu.1	+	20	2294	c.2085C>T	c.(2083-2085)GGC>GGT	p.G695G	SGSM3_uc011aot.1_Silent_p.G606G|SGSM3_uc010gyd.1_Silent_p.G766G	NM_015705	NP_056520	Q96HU1	SGSM3_HUMAN	small G protein signaling modulator 3	695	RUN.				cell cycle arrest|Rap protein signal transduction	cytoplasm	Rab GTPase activator activity|Rab GTPase binding			ovary(2)	2						GCAGCCCGGGCTGGGTCCAGA	0.647													42	74					0	0	1	0	0	
MKL1	57591	broad.mit.edu	37	22	40814412	40814412	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:40814412T>C	uc003ayv.1	-	9	2237	c.2030A>G	c.(2029-2031)GAC>GGC	p.D677G	MKL1_uc003ayw.1_Missense_Mutation_p.D677G|MKL1_uc010gye.1_Missense_Mutation_p.D677G|MKL1_uc010gyf.1_Missense_Mutation_p.D627G	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	677	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GCCAGGGCTGTCTGCATTCTT	0.647			T	RBM15	acute megakaryocytic leukemia								27	69					0	0	1	0	0	
MKL1	57591	broad.mit.edu	37	22	40819672	40819672	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:40819672C>T	uc003ayv.1	-	6	702	c.495G>A	c.(493-495)CCG>CCA	p.P165P	MKL1_uc003ayw.1_Silent_p.P165P|MKL1_uc010gye.1_Silent_p.P165P|MKL1_uc010gyf.1_Intron	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	165	Mediates interaction with SCAI and ACTB (By similarity).				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CCCGGCCCATCGGAAGTTGAG	0.597			T	RBM15	acute megakaryocytic leukemia								12	35					0	0	1	0	0	
EP300	2033	broad.mit.edu	37	22	41574128	41574128	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:41574128C>T	uc003azl.3	+	31	6808	c.6413C>T	c.(6412-6414)GCG>GTG	p.A2138V		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	2138	Interaction with HTLV-1 Tax.|Interaction with NCOA2.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						CCAATGCAGGCGGGCGTTCAG	0.632			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				43	57					0	0	1	0	0	
RANGAP1	5905	broad.mit.edu	37	22	41660674	41660674	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:41660674G>A	uc003azs.2	-	4	1944	c.474C>T	c.(472-474)GGC>GGT	p.G158G	RANGAP1_uc003azt.2_Silent_p.G158G|RANGAP1_uc003azu.2_Silent_p.G158G|RANGAP1_uc011aoz.1_Silent_p.G148G	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	158					mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						CCACCTTGCCGCCGCCAATGC	0.637													11	33					0	0	1	0	0	
MEI1	150365	broad.mit.edu	37	22	42095614	42095614	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:42095614C>T	uc003baz.1	+	1	97	c.72C>T	c.(70-72)TTC>TTT	p.F24F	MEI1_uc003bay.3_Silent_p.F24F|MEI1_uc011apd.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	24							binding			central_nervous_system(1)|skin(1)	2						CGCTTCTATTCGAGAGGGCCC	0.726													11	20					0	0	1	0	0	
SEPT3	55964	broad.mit.edu	37	22	42377818	42377818	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:42377818C>T	uc003bbr.3	+	2	318	c.180C>T	c.(178-180)TTC>TTT	p.F60F	WBP2NL_uc011ape.1_Intron|SEPT3_uc003bbs.3_Silent_p.F60F|SEPT3_uc010gyr.2_Intron|SEPT3_uc011apj.1_Intron|SEPT3_uc010gys.2_5'UTR	NM_145733	NP_663786	Q9UH03	SEPT3_HUMAN	septin 3 isoform A	60					cell cycle|cytokinesis	cell junction|septin complex	GTP binding				0						AGACCGGTTTCGACTTCAACA	0.567													19	22					0	0	1	0	0	
TCF20	6942	broad.mit.edu	37	22	42609814	42609814	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:42609814T>G	uc003bcj.1	-	1	1632	c.1498A>C	c.(1498-1500)AAT>CAT	p.N500H	TCF20_uc003bck.1_Missense_Mutation_p.N500H|TCF20_uc003bnt.2_Missense_Mutation_p.N500H	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	500					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						CCTTCAGAATTTGTGCAGCTA	0.502													91	208					0	0	1	0	0	
PACSIN2	11252	broad.mit.edu	37	22	43289591	43289591	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:43289591C>T	uc010gzg.2	-	3	311	c.89G>A	c.(88-90)CGG>CAG	p.R30Q	PACSIN2_uc003bdg.3_Missense_Mutation_p.R30Q|PACSIN2_uc003bde.3_Missense_Mutation_p.R30Q|PACSIN2_uc003bdf.3_Missense_Mutation_p.R30Q	NM_007229	NP_009160	Q9UNF0	PACN2_HUMAN	protein kinase C and casein kinase substrate in	30	FCH.				actin cytoskeleton organization|endocytosis	cytoplasmic membrane-bounded vesicle	transporter activity				0		Glioma(61;0.222)				ATCGTCGATCCGCTTCACAGT	0.637													26	40					0	0	1	0	0	
SCUBE1	80274	broad.mit.edu	37	22	43616481	43616481	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:43616481G>A	uc003bdt.1	-	14	1750	c.1662C>T	c.(1660-1662)ATC>ATT	p.I554I		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	554					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				TCTTTGTCTCGATCTCAAACT	0.607													30	75					0	0	1	0	0	
SCUBE1	80274	broad.mit.edu	37	22	43619155	43619155	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:43619155G>A	uc003bdt.1	-	11	1363	c.1275C>T	c.(1273-1275)GGC>GGT	p.G425G		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	425					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				TCTCCACACCGCCTGCCTTGC	0.627													51	69					0	0	1	0	0	
EFCAB6	64800	broad.mit.edu	37	22	44067870	44067870	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:44067870C>T	uc003bdy.1	-	15	1838	c.1623G>A	c.(1621-1623)ACG>ACA	p.T541T	EFCAB6_uc003bdz.1_Silent_p.T389T|EFCAB6_uc010gzi.1_Silent_p.T389T|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	541					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AATGTGCATTCGTTAAAAATG	0.348													19	35					0	0	1	0	0	
SAMM50	25813	broad.mit.edu	37	22	44364687	44364687	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:44364687A>G	uc003bej.2	+	4	508	c.311A>G	c.(310-312)GAC>GGC	p.D104G	SAMM50_uc011aqd.1_5'UTR	NM_015380	NP_056195	Q9Y512	SAM50_HUMAN	sorting and assembly machinery component 50	104					protein import into mitochondrial outer membrane	integral to membrane|integral to membrane of membrane fraction|mitochondrial sorting and assembly machinery complex	protein binding			skin(1)	1		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				GTTTTGATTGACACATGTCAA	0.393													28	53					0	0	1	0	0	
WNT7B	7477	broad.mit.edu	37	22	46327148	46327148	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:46327148C>T	uc003bgo.2	-	3	774	c.400G>A	c.(400-402)GAC>AAC	p.D134N	WNT7B_uc010haa.2_Missense_Mutation_p.D138N	NM_058238	NP_478679	P56706	WNT7B_HUMAN	wingless-type MMTV integration site family,	134					activation of JUN kinase activity|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|central nervous system vasculogenesis|chorio-allantoic fusion|developmental growth involved in morphogenesis|embryonic placenta morphogenesis|establishment or maintenance of polarity of embryonic epithelium|fibroblast proliferation|forebrain regionalization|inner medullary collecting duct development|lens fiber cell development|lobar bronchus development|lung epithelium development|lung morphogenesis|lung-associated mesenchyme development|mammary gland epithelium development|metanephric collecting duct development|metanephric loop of Henle development|metanephros morphogenesis|negative regulation of smoothened signaling pathway|outer medullary collecting duct development|oxygen homeostasis|positive regulation of JNK cascade|positive regulation of osteoblast differentiation|renal inner medulla development|renal outer medulla development|stem cell proliferation|synapse organization|trachea cartilage morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled binding|signal transducer activity			lung(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|LUAD - Lung adenocarcinoma(64;0.247)		TTCTCGCGGTCGCAGCCGCAG	0.682													15	43					0	0	1	0	0	
PKDREJ	10343	broad.mit.edu	37	22	46653760	46653760	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:46653760T>G	uc003bhh.2	-	1	5460	c.5460A>C	c.(5458-5460)GAA>GAC	p.E1820D		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1820	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GACAATGAATTTCTCTTCTGA	0.398													104	208					0	0	1	0	0	
PKDREJ	10343	broad.mit.edu	37	22	46653808	46653808	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:46653808T>G	uc003bhh.2	-	1	5412	c.5412A>C	c.(5410-5412)AAA>AAC	p.K1804N		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1804	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GTAGACACATTTTTTCACTAG	0.393													108	199					0	0	1	0	0	
PKDREJ	10343	broad.mit.edu	37	22	46656446	46656446	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:46656446G>A	uc003bhh.2	-	1	2774	c.2774C>T	c.(2773-2775)TCG>TTG	p.S925L		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	925	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CACCTCCACCGAAGTGTTTTC	0.438													83	154					0	0	1	0	0	
CELSR1	9620	broad.mit.edu	37	22	46760630	46760630	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:46760630T>C	uc003bhw.1	-	33	8558	c.8558A>G	c.(8557-8559)GAC>GGC	p.D2853G		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2853	Cytoplasmic (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GGCCACAGCGTCCCCTGAGGC	0.687													6	15					0	0	1	0	0	
CELSR1	9620	broad.mit.edu	37	22	46794454	46794454	+	Silent	SNP	G	T	T	rs144288536		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:46794454G>T	uc003bhw.1	-	11	5493	c.5493C>A	c.(5491-5493)GTC>GTA	p.V1831V	CELSR1_uc011arc.1_Silent_p.V152V	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1831	Extracellular (Potential).|Laminin G-like 2.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GGCGCACGGAGACCTTGTCTT	0.687													28	44					4.74835e-14	5.33807e-14	1	1	0	
GRAMD4	23151	broad.mit.edu	37	22	47022799	47022799	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:47022799G>A	uc003bhx.2	+	1	142	c.103G>A	c.(103-105)GAA>AAA	p.E35K		NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	35					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		ATGCAGCGACGAAATCCCCCT	0.602													42	66					0	0	1	0	0	
PLXNB2	23654	broad.mit.edu	37	22	50718432	50718432	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:50718432A>G	uc003bkv.3	-	26	4348	c.4242_splice	c.e26+1	p.K1414_splice	PLXNB2_uc003bkt.1_Splice_Site_p.K206_splice|PLXNB2_uc003bku.1_Splice_Site_p.K399_splice	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor						regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GGTGGAACCCACCTTGAGGTA	0.617													19	43					0	0	1	0	0	
SBF1	6305	broad.mit.edu	37	22	50900836	50900836	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:50900836G>A	uc003blh.2	-	19	2389	c.2194C>T	c.(2194-2196)CGC>TGC	p.R732C	SBF1_uc011arx.1_Missense_Mutation_p.R396C|SBF1_uc003bli.2_Missense_Mutation_p.R733C	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	732					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GGCCACAAGCGCCGCTGCTCA	0.642													51	72					0	0	1	0	0	
MIOX	55586	broad.mit.edu	37	22	50927709	50927709	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr22:50927709T>C	uc003bll.1	+	7	685	c.571T>C	c.(571-573)TCC>CCC	p.S191P	MIOX_uc003blm.1_Missense_Mutation_p.S191P|MIOX_uc003bln.1_Silent_p.C201C	NM_017584	NP_060054	Q9UGB7	MIOX_HUMAN	myo-inositol oxygenase	191					inositol catabolic process	cytoplasm|inclusion body	aldo-keto reductase (NADP) activity|ferric iron binding|inositol oxygenase activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GGTCCTCATGTCCTGGGGCCA	0.507													3	10					0	0	1	0	0	
CNTN6	27255	broad.mit.edu	37	3	1425079	1425079	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:1425079T>G	uc003boz.2	+	19	2771	c.2504T>G	c.(2503-2505)GTG>GGG	p.V835G	CNTN6_uc011asj.1_Missense_Mutation_p.V763G|CNTN6_uc003bpa.2_Missense_Mutation_p.V835G	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	835	Fibronectin type-III 3.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		ACTGGAAGAGTGCTGGGCTAT	0.443													57	48					0	0	1	0	0	
IL5RA	3568	broad.mit.edu	37	3	3137010	3137010	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:3137010T>C	uc011ask.1	-	9	1472	c.828A>G	c.(826-828)ATA>ATG	p.I276M	IL5RA_uc010hbq.2_Intron|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Missense_Mutation_p.I276M|IL5RA_uc011asl.1_Missense_Mutation_p.I276M|IL5RA_uc011asm.1_Missense_Mutation_p.I276M|IL5RA_uc010hbt.2_Missense_Mutation_p.I276M|IL5RA_uc011asn.1_Missense_Mutation_p.I276M|IL5RA_uc010hbu.2_Missense_Mutation_p.I276M|IL5RA_uc010hbp.2_5'Flank	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	276	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		TTGTATTGTGTATTTTTACTT	0.323													16	17					0	0	1	0	0	
EDEM1	9695	broad.mit.edu	37	3	5241340	5241340	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:5241340G>A	uc003bqi.2	+	3	778	c.646G>A	c.(646-648)GAC>AAC	p.D216N	EDEM1_uc011asz.1_Intron|EDEM1_uc003bqh.2_Missense_Mutation_p.D216N	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like	216	Lumenal (Potential).				ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		AGTTTCATTTGACAAAGATTC	0.348													16	15					0	0	1	0	0	
GRM7	2917	broad.mit.edu	37	3	6903450	6903450	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:6903450G>A	uc003bqm.2	+	1	649	c.375G>A	c.(373-375)GCG>GCA	p.A125A	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.A125A|GRM7_uc003bql.2_Silent_p.A125A	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	125	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TCGTCCAGGCGCTCATCCAGA	0.602													28	21					0	0	1	0	0	
GRM7	2917	broad.mit.edu	37	3	7721736	7721736	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:7721736C>A	uc003bqm.2	+	9	2726	c.2452C>A	c.(2452-2454)CTC>ATC	p.L818I	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.L818I|GRM7_uc003bql.2_Missense_Mutation_p.L818I|GRM7_uc003bqn.1_Missense_Mutation_p.L401I	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	818	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TGTCTCCTAGCTCTACATACA	0.433													17	28					4.7546e-09	5.08881e-09	1	1	0	
RAD18	56852	broad.mit.edu	37	3	8983301	8983301	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:8983301C>A	uc003brd.2	-	5	531	c.454G>T	c.(454-456)GAA>TAA	p.E152*	RAD18_uc003bre.2_RNA	NM_020165	NP_064550	Q9NS91	RAD18_HUMAN	postreplication repair protein hRAD18p	152					DNA repair	nucleus|replication fork	damaged DNA binding|ligase activity|ubiquitin protein ligase binding|Y-form DNA binding|zinc ion binding			skin(3)|ovary(2)	5				OV - Ovarian serous cystadenocarcinoma(96;0.0552)		CTTTTATTTTCTTTTATCAAC	0.443								Rad6_pathway					41	79					3.77016e-25	4.54193e-25	1	1	0	
RAD18	56852	broad.mit.edu	37	3	8990233	8990233	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:8990233T>G	uc003brd.2	-	3	232	c.155A>C	c.(154-156)AAA>ACA	p.K52T	RAD18_uc003bre.2_RNA	NM_020165	NP_064550	Q9NS91	RAD18_HUMAN	postreplication repair protein hRAD18p	52	RING-type.				DNA repair	nucleus|replication fork	damaged DNA binding|ligase activity|ubiquitin protein ligase binding|Y-form DNA binding|zinc ion binding			skin(3)|ovary(2)	5				OV - Ovarian serous cystadenocarcinoma(96;0.0552)		GGACAGAAATTTTCTTATACA	0.313								Rad6_pathway					49	86					0	0	1	0	0	
SETD5	55209	broad.mit.edu	37	3	9482139	9482139	+	Splice_Site	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:9482139G>T	uc003brt.2	+	8	1003	c.568_splice	c.e8-1	p.N190_splice	SETD5_uc003brs.1_Splice_Site_p.N171_splice|SETD5_uc003bru.2_Splice_Site_p.N92_splice|SETD5_uc003brv.2_Splice_Site_p.N79_splice|SETD5_uc010hck.2_5'Flank|SETD5_uc003brw.1_5'Flank|SETD5_uc003brx.2_5'Flank	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5											ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		GTTTTCTACAGAATTCTCCCT	0.423													11	17					3.86212e-05	3.96572e-05	1	1	0	
CPNE9	151835	broad.mit.edu	37	3	9760228	9760228	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:9760228C>T	uc003bsd.2	+	16	1354	c.1183C>T	c.(1183-1185)CGC>TGC	p.R395C		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	395	VWFA.							p.R395C(1)		ovary(2)	2	Medulloblastoma(99;0.227)					CCAGAGCCTGCGCACAGTGCA	0.567													39	73					0	0	1	0	0	
TADA3	10474	broad.mit.edu	37	3	9831496	9831496	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:9831496C>T	uc003bsx.1	-	3	907	c.359G>A	c.(358-360)CGG>CAG	p.R120Q	TADA3_uc010hcn.1_Missense_Mutation_p.R120Q|TADA3_uc003bsy.2_Missense_Mutation_p.R120Q|ARPC4_uc003bsz.1_5'Flank|ARPC4_uc003bta.1_5'Flank|ARPC4_uc003btb.1_5'Flank|ARPC4_uc003btc.1_5'Flank	NM_006354	NP_006345	O75528	TADA3_HUMAN	transcriptional adaptor 3 isoform a	120					estrogen receptor signaling pathway|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	ligand-dependent nuclear receptor binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity				0						GGATTTGGGCCGTCCTGGGCC	0.562													37	88					0	0	1	0	0	
CIDEC	63924	broad.mit.edu	37	3	9911628	9911628	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:9911628A>C	uc003btq.2	-	5	632	c.492T>G	c.(490-492)ACT>ACG	p.T164T	CIDEC_uc003bto.2_Intron|CIDEC_uc010hcp.2_Intron|CIDEC_uc003btp.2_Silent_p.T174T|CIDEC_uc003btr.2_Silent_p.T90T|CIDEC_uc003bts.2_Silent_p.T90T	NM_022094	NP_071377	Q96AQ7	CIDEC_HUMAN	cell death-inducing DFFA-like effector c	164					apoptosis|induction of apoptosis	cytosol|focal adhesion|nucleus				central_nervous_system(1)	1	Medulloblastoma(99;0.227)					TATCATAAAAAGTCGCCTTCA	0.502													33	68					0	0	1	0	0	
IL17RE	132014	broad.mit.edu	37	3	9950918	9950918	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:9950918G>A	uc003btu.2	+	9	870	c.753G>A	c.(751-753)GAG>GAA	p.E251E	CIDEC_uc003bto.2_Intron|IL17RE_uc003btv.2_Silent_p.E251E|IL17RE_uc011atn.1_Intron|IL17RE_uc003btw.2_Silent_p.E251E|IL17RE_uc003btx.2_Silent_p.E135E|IL17RE_uc010hcq.2_Silent_p.E251E|IL17RE_uc003bty.2_RNA	NM_153483	NP_705616	Q8NFR9	I17RE_HUMAN	interleukin 17 receptor E isoform 1	251	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane	receptor activity			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(96;5.34e-64)		ACCTGCAAGAGGACACTGTGA	0.532													13	24					0	0	1	0	0	
IL17RC	84818	broad.mit.edu	37	3	9959714	9959714	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:9959714G>A	uc003bua.2	+	3	684	c.448G>A	c.(448-450)GAC>AAC	p.D150N	CIDEC_uc003bto.2_Intron|IL17RC_uc010hcr.2_RNA|IL17RC_uc011ato.1_RNA|IL17RC_uc010hcs.2_Missense_Mutation_p.D79N|IL17RC_uc003btz.2_Missense_Mutation_p.D79N|IL17RC_uc011atp.1_5'UTR|IL17RC_uc003bud.2_5'UTR|IL17RC_uc003bub.2_Missense_Mutation_p.D79N|IL17RC_uc010hct.2_Missense_Mutation_p.D79N|IL17RC_uc010hcu.2_Missense_Mutation_p.D79N|IL17RC_uc010hcv.2_Missense_Mutation_p.D79N|IL17RC_uc011atq.1_Missense_Mutation_p.D79N|IL17RC_uc003buc.2_5'UTR	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	150	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						GAAGGAGACCGACTGTGACCT	0.622													10	12					0	0	1	0	0	
C3orf24	115795	broad.mit.edu	37	3	10146117	10146117	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:10146117C>T	uc003buz.2	-	2	567	c.342G>A	c.(340-342)TGG>TGA	p.W114*	C3orf24_uc003bva.1_Nonsense_Mutation_p.W114*	NM_173472	NP_775743	Q96PS1	CC024_HUMAN	hypothetical protein LOC115795	114											0				OV - Ovarian serous cystadenocarcinoma(96;0.196)		AAGTCCCGGTCCACTTTGGTG	0.517													37	91					0	0	1	0	0	
SEC13	6396	broad.mit.edu	37	3	10354352	10354352	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:10354352G>A	uc003bvn.2	-	4	346	c.227C>T	c.(226-228)TCG>TTG	p.S76L	SEC13_uc003bvl.2_Missense_Mutation_p.S8L|SEC13_uc003bvm.2_Missense_Mutation_p.S62L|SEC13_uc003bvp.2_Missense_Mutation_p.S79L|SEC13_uc003bvo.2_Missense_Mutation_p.S122L|SEC13_uc003bvq.1_Missense_Mutation_p.S62L|SEC13_uc003bvr.1_Missense_Mutation_p.S62L|SEC13_uc011aul.1_Missense_Mutation_p.S76L	NM_183352	NP_899195	P55735	SEC13_HUMAN	SEC13 protein isoform 1	76	WD 2.				COPII vesicle coating|intracellular protein transport|mitotic prometaphase|mRNA transport|post-translational protein modification|protein N-linked glycosylation via asparagine|transmembrane transport	cytosol|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Nup107-160 complex	protein binding			ovary(1)	1						ATAGGAGCACGATGCCAGGAT	0.572													44	78					0	0	1	0	0	
HRH1	3269	broad.mit.edu	37	3	11301359	11301359	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:11301359G>T	uc010hdr.2	+	2	978	c.636G>T	c.(634-636)AAG>AAT	p.K212N	HRH1_uc010hds.2_Missense_Mutation_p.K212N|HRH1_uc010hdt.2_Missense_Mutation_p.K212N|HRH1_uc003bwb.3_Missense_Mutation_p.K212N	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	212	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	TCTATGCCAAGATCTACAAGG	0.512													42	103					2.56662e-36	3.17178e-36	1	1	0	
MKRN2	23609	broad.mit.edu	37	3	12613843	12613843	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:12613843G>A	uc003bxd.2	+	4	669	c.613G>A	c.(613-615)GAC>AAC	p.D205N	MKRN2_uc003bxe.2_Missense_Mutation_p.D203N|MKRN2_uc011aus.1_Missense_Mutation_p.D162N	NM_014160	NP_054879	Q9H000	MKRN2_HUMAN	makorin ring finger protein 2	205	Makorin-type Cys-His.					intracellular	ligase activity|nucleic acid binding|zinc ion binding				0						GCACCCATTCGACCCAGAGCA	0.522													20	27					0	0	1	0	0	
CAND2	23066	broad.mit.edu	37	3	12858123	12858123	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:12858123G>A	uc003bxk.2	+	10	1741	c.1692G>A	c.(1690-1692)GAG>GAA	p.E564E	CAND2_uc003bxj.2_Silent_p.E471E	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	564					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						TGGATCCTGAGCCATATGTTG	0.627													35	45					0	0	1	0	0	
CAND2	23066	broad.mit.edu	37	3	12858461	12858461	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:12858461A>G	uc003bxk.2	+	10	2079	c.2030A>G	c.(2029-2031)GAC>GGC	p.D677G	CAND2_uc003bxj.2_Missense_Mutation_p.D584G	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	677	HEAT 14.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						GCAGCCCTGGACGCCCTGGCC	0.662													22	39					0	0	1	0	0	
CAND2	23066	broad.mit.edu	37	3	12858543	12858543	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:12858543C>T	uc003bxk.2	+	10	2161	c.2112C>T	c.(2110-2112)AAC>AAT	p.N704N	CAND2_uc003bxj.2_Silent_p.N611N	NM_001162499	NP_001155971	O75155	CAND2_HUMAN	TBP-interacting protein isoform 1	704	HEAT 15.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			skin(3)|pancreas(1)	4						CCCTGGTCAACGAGAGCGACA	0.677													14	43					0	0	1	0	0	
IQSEC1	9922	broad.mit.edu	37	3	12955032	12955032	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:12955032G>A	uc003bxt.2	-	9	2263	c.2254C>T	c.(2254-2256)CGG>TGG	p.R752W	IQSEC1_uc003bxu.3_Missense_Mutation_p.R630W|IQSEC1_uc011auw.1_Missense_Mutation_p.R738W	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	752					regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						CAGACCAACCGACGGTGGGGC	0.607													10	21					0	0	1	0	0	
NUP210	23225	broad.mit.edu	37	3	13372091	13372091	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:13372091C>T	uc003bxv.1	-	30	4062	c.3979G>A	c.(3979-3981)GAA>AAA	p.E1327K		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1327	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GGAACCTTTTCGGGTCCATCC	0.517													38	65					0	0	1	0	0	
NUP210	23225	broad.mit.edu	37	3	13417924	13417924	+	Missense_Mutation	SNP	C	T	T	rs141201901		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:13417924C>T	uc003bxv.1	-	10	1243	c.1160G>A	c.(1159-1161)CGA>CAA	p.R387Q	NUP210_uc003bxx.2_Missense_Mutation_p.R59Q	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	387	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					AGTTTCAATTCGGATGTTCTG	0.542													27	44					0	0	1	0	0	
FBLN2	2199	broad.mit.edu	37	3	13655629	13655629	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:13655629G>A	uc011avb.1	+	5	1819	c.1694G>A	c.(1693-1695)CGC>CAC	p.R565H	FBLN2_uc011auz.1_Missense_Mutation_p.R591H|FBLN2_uc011ava.1_Missense_Mutation_p.R565H|FBLN2_uc011avc.1_Missense_Mutation_p.R565H|uc003byc.1_5'Flank	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	565						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CCTGAGGTTCGCCGACCTCCA	0.592													18	33					0	0	1	0	0	
TMEM43	79188	broad.mit.edu	37	3	14176277	14176277	+	Silent	SNP	C	T	T	rs145024252		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:14176277C>T	uc003byk.2	+	8	845	c.591C>T	c.(589-591)ATC>ATT	p.I197I	TMEM43_uc003byl.1_Silent_p.I77I	NM_024334	NP_077310	Q9BTV4	TMM43_HUMAN	transmembrane protein 43	197	Lumenal (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|nuclear inner membrane				ovary(1)	1						CAGGCCTCATCGACAAAGTCG	0.453													22	61					0	0	1	0	0	
LSM3	27258	broad.mit.edu	37	3	14223069	14223069	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:14223069A>G	uc003byn.2	+	2	60	c.31A>G	c.(31-33)ACC>GCC	p.T11A	XPC_uc011ave.1_5'Flank|XPC_uc011avf.1_5'Flank|XPC_uc011avg.1_5'Flank	NM_014463	NP_055278	P62310	LSM3_HUMAN	Lsm3 protein	11					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	catalytic step 2 spliceosome|cytosol	protein binding|RNA binding			ovary(1)	1						gcaacaaactaccAACACTGT	0.224													39	114					0	0	1	0	0	
GRIP2	80852	broad.mit.edu	37	3	14535218	14535218	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:14535218G>T	uc011avi.1	-	25	3381	c.3381C>A	c.(3379-3381)AGC>AGA	p.S1127R	GRIP2_uc010heh.2_RNA|GRIP2_uc011avh.1_Missense_Mutation_p.S658R	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	1029					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GGGGGGCCCGGCTGCTGTGTG	0.677													7	7					6.5536e-12	7.22086e-12	1	1	0	
METTL6	131965	broad.mit.edu	37	3	15457386	15457386	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:15457386G>A	uc003bzs.1	-	4	682	c.424C>T	c.(424-426)CTT>TTT	p.L142F	METTL6_uc011avp.1_Missense_Mutation_p.L97F|METTL6_uc003bzt.1_Missense_Mutation_p.L142F|METTL6_uc010hen.1_5'Flank	NM_152396	NP_689609	Q8TCB7	METL6_HUMAN	methyltransferase like 6	142							methyltransferase activity				0						TGATCCAGAAGATCATCTTTA	0.373													33	68					0	0	1	0	0	
BTD	686	broad.mit.edu	37	3	15686453	15686453	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:15686453A>T	uc003cah.2	+	4	1193	c.1090A>T	c.(1090-1092)ATT>TTT	p.I364F	BTD_uc011avv.1_Missense_Mutation_p.I366F|BTD_uc011avw.1_Missense_Mutation_p.I366F|BTD_uc011avx.1_Missense_Mutation_p.I344F	NM_000060	NP_000051	P43251	BTD_HUMAN	biotinidase precursor	364					central nervous system development|epidermis development|nitrogen compound metabolic process	extracellular space	biotin carboxylase activity|biotinidase activity				0						GTTTTTAAAAATTTTGTCAGG	0.473													46	83					0	0	1	0	0	
BTD	686	broad.mit.edu	37	3	15686848	15686848	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:15686848C>T	uc003cah.2	+	4	1588	c.1485C>T	c.(1483-1485)ATC>ATT	p.I495I	BTD_uc011avv.1_Silent_p.I497I|BTD_uc011avw.1_Silent_p.I497I|BTD_uc011avx.1_Silent_p.I475I	NM_000060	NP_000051	P43251	BTD_HUMAN	biotinidase precursor	495					central nervous system development|epidermis development|nitrogen compound metabolic process	extracellular space	biotin carboxylase activity|biotinidase activity				0						CTTCCTATATCTTTCCTTTGT	0.512													9	97					0	0	1	0	0	
GALNTL2	117248	broad.mit.edu	37	3	16237352	16237352	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:16237352C>T	uc003car.3	+	2	1100	c.625C>T	c.(625-627)CGG>TGG	p.R209W	GALNTL2_uc003caq.3_5'UTR	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	209	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CACTCTCCTGCGGACTGTACA	0.607													22	43					0	0	1	0	0	
GALNTL2	117248	broad.mit.edu	37	3	16242239	16242239	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:16242239G>A	uc003car.3	+	3	1295	c.820G>A	c.(820-822)GCC>ACC	p.A274T	GALNTL2_uc003caq.3_Missense_Mutation_p.A7T	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	274	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						GGCCACCAGAGCCACCGGGGA	0.612													27	36					0	0	1	0	0	
RFTN1	23180	broad.mit.edu	37	3	16475491	16475491	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:16475491C>T	uc003cay.2	-	3	481	c.199G>A	c.(199-201)GCC>ACC	p.A67T	RFTN1_uc010hes.2_Missense_Mutation_p.A31T	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	67						plasma membrane				ovary(3)|central_nervous_system(1)	4						AGGAGCTGGGCGGGCAGGTCA	0.667													24	48					0	0	1	0	0	
SATB1	6304	broad.mit.edu	37	3	18427971	18427971	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:18427971C>T	uc003cbh.2	-	8	3074	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K	SATB1_uc003cbi.2_Missense_Mutation_p.E447K|SATB1_uc003cbj.2_Missense_Mutation_p.E447K	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	447	CUT 1.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						CTTTCCCTTTCGTCCTGGTAT	0.567													38	101					0	0	1	0	0	
EFHB	151651	broad.mit.edu	37	3	19924060	19924060	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:19924060C>A	uc003cbl.3	-	12	2506	c.2310G>T	c.(2308-2310)AAG>AAT	p.K770N	EFHB_uc003cbm.2_Missense_Mutation_p.K640N	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	770					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						TTGATCTGGTCTTGAAGAAGT	0.318													5	17					0.00116845	0.00118508	1	1	0	
NR1D2	9975	broad.mit.edu	37	3	24003483	24003483	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:24003483G>A	uc003ccs.2	+	5	852	c.533G>A	c.(532-534)CGT>CAT	p.R178H	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Missense_Mutation_p.R103H	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	178					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						CGGTTTGGTCGTATTCCTAAG	0.343													16	31					0	0	1	0	0	
LOC152024	152024	broad.mit.edu	37	3	24138650	24138650	+	RNA	SNP	G	A	A	rs60523116	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:24138650G>A	uc003ccu.3	-	4		c.2098C>T								Homo sapiens hypothetical protein LOC152024, mRNA (cDNA clone IMAGE:4829078).												0						CAATAGGACTGCCTTCATAAT	0.423													3	21					0	0	1	0	0	
THRB	7068	broad.mit.edu	37	3	24169075	24169075	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:24169075G>T	uc003ccx.3	-	10	1408	c.1059C>A	c.(1057-1059)ATC>ATA	p.I353I	THRB_uc010hfe.2_Silent_p.I353I|THRB_uc003ccy.3_Silent_p.I353I|THRB_uc003ccz.3_Silent_p.I348I	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	353	Ligand-binding.|Interaction with NR2F6.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	CCAGGTCAAAGATGGCGTCTG	0.527													21	145					2.32416e-17	2.69338e-17	1	1	0	
THRB	7068	broad.mit.edu	37	3	24188225	24188225	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:24188225C>T	uc003ccx.3	-	7	822	c.473G>A	c.(472-474)CGA>CAA	p.R158Q	THRB_uc010hfe.2_Missense_Mutation_p.R158Q|THRB_uc003ccy.3_Missense_Mutation_p.R158Q|THRB_uc003ccz.3_Missense_Mutation_p.R153Q	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	158	NR C4-type.|Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	GCACTGATTTCGCGTGACTTT	0.363													40	61					0	0	1	0	0	
RARB	5915	broad.mit.edu	37	3	25542770	25542770	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:25542770A>C	uc011awl.1	+	3	491	c.425A>C	c.(424-426)TAC>TCC	p.Y142S	RARB_uc003cdi.1_Missense_Mutation_p.Y23S|RARB_uc003cdh.2_Missense_Mutation_p.Y135S	NM_016152	NP_057236	P10826	RARB_HUMAN	retinoic acid receptor, beta isoform 2	142	Nuclear receptor.|NR C4-type.				embryonic digestive tract development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	protein binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|large_intestine(1)|pancreas(1)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tamibarotene(DB04942)|Tazarotene(DB00799)	CGATGCCAATACTGTCGACTC	0.393													31	58					0	0	1	0	0	
LRRC3B	116135	broad.mit.edu	37	3	26751587	26751587	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:26751587A>C	uc003cdp.2	+	2	1013	c.424A>C	c.(424-426)ATT>CTT	p.I142L	LRRC3B_uc003cdq.2_Missense_Mutation_p.I142L	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	142						integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						CAGGGCCAGAATTGCCAACAA	0.498													10	31					0	0	1	0	0	
SLC4A7	9497	broad.mit.edu	37	3	27439829	27439829	+	Missense_Mutation	SNP	G	A	A	rs142923476	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:27439829G>A	uc003cdv.2	-	17	2487	c.2416C>T	c.(2416-2418)CGT>TGT	p.R806C	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.R687C|SLC4A7_uc011aww.1_Missense_Mutation_p.R815C|SLC4A7_uc011awx.1_Missense_Mutation_p.R802C|SLC4A7_uc011awy.1_Missense_Mutation_p.R798C|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.R687C|SLC4A7_uc011axb.1_Missense_Mutation_p.R802C|SLC4A7_uc010hfl.2_Missense_Mutation_p.R356C|SLC4A7_uc003cdw.2_Missense_Mutation_p.R682C	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	806	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						AATACACCACGAAGTTTTTTA	0.333													41	67					0	0	1	0	0	
SLC4A7	9497	broad.mit.edu	37	3	27446338	27446338	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:27446338A>C	uc003cdv.2	-	14	2102	c.2031T>G	c.(2029-2031)ATT>ATG	p.I677M	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.I558M|SLC4A7_uc011aww.1_Missense_Mutation_p.I686M|SLC4A7_uc011awx.1_Missense_Mutation_p.I673M|SLC4A7_uc011awy.1_Missense_Mutation_p.I669M|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.I558M|SLC4A7_uc011axb.1_Missense_Mutation_p.I673M|SLC4A7_uc010hfl.2_Missense_Mutation_p.I227M|SLC4A7_uc003cdw.2_Missense_Mutation_p.I553M	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	677	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						ATTTATATAAAATTTTTTCAA	0.328													17	35					0	0	1	0	0	
SLC4A7	9497	broad.mit.edu	37	3	27465554	27465554	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:27465554C>A	uc003cdv.2	-	8	1284	c.1213G>T	c.(1213-1215)GAA>TAA	p.E405*	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Nonsense_Mutation_p.E286*|SLC4A7_uc011aww.1_Nonsense_Mutation_p.E414*|SLC4A7_uc011awx.1_Nonsense_Mutation_p.E401*|SLC4A7_uc011awy.1_Nonsense_Mutation_p.E397*|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Nonsense_Mutation_p.E286*|SLC4A7_uc011axb.1_Nonsense_Mutation_p.E401*|SLC4A7_uc010hfm.2_Nonsense_Mutation_p.E286*|SLC4A7_uc010hfl.2_Missense_Mutation_p.E7D|SLC4A7_uc003cdw.2_Nonsense_Mutation_p.E281*	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	405	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						GTACTATTTTCTCTGCTTCCA	0.343													27	46					7.26314e-15	8.22614e-15	1	1	0	
ZCWPW2	152098	broad.mit.edu	37	3	28454570	28454570	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:28454570A>C	uc003ceh.2	+	3	179	c.11A>C	c.(10-12)GAA>GCA	p.E4A	ZCWPW2_uc003cei.2_Missense_Mutation_p.E4A	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	4							zinc ion binding			ovary(2)	2						ATGGATAAAGAAAAATTGGAT	0.303													23	51					0	0	1	0	0	
ZCWPW2	152098	broad.mit.edu	37	3	28562602	28562602	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:28562602G>A	uc003ceh.2	+	9	1072	c.904G>A	c.(904-906)GAA>AAA	p.E302K	ZCWPW2_uc003cei.2_Missense_Mutation_p.E302K|ZCWPW2_uc010hfo.2_Missense_Mutation_p.E107K	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	302							zinc ion binding			ovary(2)	2						AAATATGGGAGAAAAGGTAAT	0.338													10	16					0	0	1	0	0	
RBMS3	27303	broad.mit.edu	37	3	29529985	29529985	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:29529985G>A	uc003cel.2	+	3	532	c.302G>A	c.(301-303)TGC>TAC	p.C101Y	RBMS3_uc003cek.2_Missense_Mutation_p.C101Y|RBMS3_uc010hfq.2_Missense_Mutation_p.C101Y|RBMS3_uc003cem.2_Missense_Mutation_p.C100Y|RBMS3_uc010hfr.2_Missense_Mutation_p.C101Y	NM_001003793	NP_001003793	Q6XE24	RBMS3_HUMAN	RNA binding motif, single stranded interacting	101	RRM 1.					cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)	1		Ovarian(412;0.0956)				ACAAATCAGTGCAAAGGTATG	0.398													34	48					0	0	1	0	0	
RBMS3	27303	broad.mit.edu	37	3	29628640	29628640	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:29628640G>A	uc003cel.2	+	4	573	c.343G>A	c.(343-345)GCA>ACA	p.A115T	RBMS3_uc003cek.2_Missense_Mutation_p.A115T|RBMS3_uc010hfq.2_Missense_Mutation_p.A115T|RBMS3_uc003cem.2_Missense_Mutation_p.A114T|RBMS3_uc010hfr.2_Missense_Mutation_p.A115T	NM_001003793	NP_001003793	Q6XE24	RBMS3_HUMAN	RNA binding motif, single stranded interacting	115	RRM 1.					cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)	1		Ovarian(412;0.0956)				TCCTGCAGCCGCACAGAAAGC	0.383													15	45					0	0	1	0	0	
GADL1	339896	broad.mit.edu	37	3	30842400	30842400	+	Missense_Mutation	SNP	G	A	A	rs138172857		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:30842400G>A	uc003cep.2	-	12	1278	c.1231C>T	c.(1231-1233)CGT>TGT	p.R411C	GADL1_uc003ceq.1_Missense_Mutation_p.R411C	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	411					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	GCAAGAGCACGATTAACTCTT	0.294													21	50					0	0	1	0	0	
ZNF860	344787	broad.mit.edu	37	3	32031257	32031257	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:32031257C>A	uc011axg.1	+	2	1235	c.686C>A	c.(685-687)TCT>TAT	p.S229Y		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	229					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGAGAAAAATCTTTCCAATGT	0.313													76	32					1.25089e-41	1.55097e-41	1	1	0	
ZNF860	344787	broad.mit.edu	37	3	32032333	32032333	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:32032333C>A	uc011axg.1	+	2	2311	c.1762C>A	c.(1762-1764)CAT>AAT	p.H588N		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	588	C2H2-type 13; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGGAGAATTCATATGGGAGA	0.388													4	19					0.184627	0.184943	1	1	0	
DYNC1LI1	51143	broad.mit.edu	37	3	32568352	32568352	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:32568352C>T	uc003cfb.3	-	13	1599	c.1511G>A	c.(1510-1512)CGA>CAA	p.R504Q	DYNC1LI1_uc011axh.1_Missense_Mutation_p.R388Q	NM_016141	NP_057225	Q9Y6G9	DC1L1_HUMAN	dynein, cytoplasmic 1, light intermediate chain	504					cell division|interspecies interaction between organisms|mitosis|positive regulation of mitotic cell cycle spindle assembly checkpoint|transport	centrosome|condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|plasma membrane|spindle pole	ATP binding|motor activity			ovary(1)	1						AACTGGTTTTCGTGTAATTCT	0.363													26	75					0	0	1	0	0	
TRIM71	131405	broad.mit.edu	37	3	32932065	32932065	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:32932065G>A	uc003cff.2	+	4	1432	c.1369G>A	c.(1369-1371)GAC>AAC	p.D457N		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	457					multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						CCAGGAAGACGACCGAGTCAT	0.617													35	86					0	0	1	0	0	
SUSD5	26032	broad.mit.edu	37	3	33194681	33194681	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:33194681A>C	uc003cfo.1	-	5	1861	c.1443T>G	c.(1441-1443)TCT>TCG	p.S481S		NM_015551	NP_056366	O60279	SUSD5_HUMAN	sushi domain containing 5 precursor	481	Extracellular (Potential).				cell adhesion	integral to membrane	hyaluronic acid binding			ovary(1)|central_nervous_system(1)	2						TGGCCATGGGAGATTCCTCTG	0.527													19	31					0	0	1	0	0	
ARPP21	10777	broad.mit.edu	37	3	35748466	35748466	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:35748466A>G	uc003cgb.2	+	10	951	c.687A>G	c.(685-687)ATA>ATG	p.I229M	ARPP21_uc003cga.2_Missense_Mutation_p.I229M|ARPP21_uc011axy.1_Missense_Mutation_p.I229M|ARPP21_uc003cgf.2_Missense_Mutation_p.I65M	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	229						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TTGCTGGCAGACCAGAGCAAA	0.333													24	52					0	0	1	0	0	
ARPP21	10777	broad.mit.edu	37	3	35748563	35748563	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:35748563G>T	uc003cgb.2	+	10	1048	c.784G>T	c.(784-786)GAA>TAA	p.E262*	ARPP21_uc003cga.2_Nonsense_Mutation_p.E262*|ARPP21_uc011axy.1_Nonsense_Mutation_p.E262*|ARPP21_uc003cgf.2_Nonsense_Mutation_p.E98*	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	262						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TATTGATAAAGAAGACAATCA	0.418													19	53					0.000132079	0.000135131	1	1	0	
ARPP21	10777	broad.mit.edu	37	3	35770832	35770832	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:35770832G>A	uc003cgb.2	+	15	1527	c.1263G>A	c.(1261-1263)TCG>TCA	p.S421S	ARPP21_uc003cga.2_Silent_p.S367S|ARPP21_uc011axy.1_Silent_p.S387S|ARPP21_uc003cgf.2_Silent_p.S222S|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	421	Ser-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						CCTCAGGATCGCTGTCCCGCA	0.542													39	74					0	0	1	0	0	
STAC	6769	broad.mit.edu	37	3	36570207	36570207	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:36570207C>A	uc003cgh.1	+	9	979	c.940C>A	c.(940-942)CTT>ATT	p.L314I	STAC_uc011aya.1_Missense_Mutation_p.L253I	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	314	SH3.				intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						CATAATTACTCTTTTAGAGGA	0.294													15	14					7.07596e-05	7.25576e-05	1	1	0	
DCLK3	85443	broad.mit.edu	37	3	36779482	36779482	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:36779482C>A	uc003cgi.2	-	2	1160	c.669G>T	c.(667-669)AAG>AAT	p.K223N		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	223						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TGTCCTCTTTCTTGTCCATGC	0.577													48	83					5.73435e-26	6.92654e-26	1	1	0	
TRANK1	9881	broad.mit.edu	37	3	36874329	36874329	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:36874329C>A	uc003cgj.2	-	12	5265	c.4963G>T	c.(4963-4965)GAA>TAA	p.E1655*		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2205					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TCTTTAAGTTCTTCTGCTAAG	0.373													17	34					4.7546e-09	5.08881e-09	1	1	0	
TRANK1	9881	broad.mit.edu	37	3	36875232	36875232	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:36875232G>A	uc003cgj.2	-	12	4362	c.4060C>T	c.(4060-4062)CGC>TGC	p.R1354C		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1904					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TCTGCTAAGCGTTTCCGAGAC	0.512													30	78					0	0	1	0	0	
GOLGA4	2803	broad.mit.edu	37	3	37366074	37366074	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:37366074G>T	uc003cgv.2	+	14	3001	c.2697G>T	c.(2695-2697)CAG>CAT	p.Q899H	GOLGA4_uc010hgr.1_Missense_Mutation_p.Q460H|GOLGA4_uc003cgw.2_Missense_Mutation_p.Q921H|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Missense_Mutation_p.Q780H	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	899	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						ACAAAGAACAGGAACAGACAA	0.333													7	61					0.00198382	0.00200883	1	1	0	
VILL	50853	broad.mit.edu	37	3	38039783	38039783	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:38039783C>T	uc003chj.2	+	9	1156	c.870C>T	c.(868-870)GGC>GGT	p.G290G	VILL_uc003chl.2_Silent_p.G290G|VILL_uc010hgu.2_Silent_p.G120G	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	290	Gelsolin-like 3.				actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		ACCAGGGTGGCTTCAAGATCT	0.602													21	49					0	0	1	0	0	
PLCD1	5333	broad.mit.edu	37	3	38051969	38051969	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:38051969C>T	uc003chn.2	-	6	999	c.875G>A	c.(874-876)CGC>CAC	p.R292H	PLCD1_uc003chm.2_Missense_Mutation_p.R313H	NM_006225	NP_006216	P51178	PLCD1_HUMAN	phospholipase C, delta 1 isoform 2	292					intracellular signal transduction|lipid catabolic process|phospholipid metabolic process	cytoplasm	calcium ion binding|GTPase activating protein binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		GTAGACACGGCGGTGTGCCAG	0.637													4	47					0	0	1	0	0	
SCN5A	6331	broad.mit.edu	37	3	38593041	38593041	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:38593041G>T	uc003cio.2	-	28	5016	c.4822C>A	c.(4822-4824)CTC>ATC	p.L1608I	SCN5A_uc003cin.2_Missense_Mutation_p.L1607I|SCN5A_uc003cil.3_Missense_Mutation_p.L1608I|SCN5A_uc010hhi.2_Missense_Mutation_p.L1590I|SCN5A_uc010hhk.2_Missense_Mutation_p.L1575I|SCN5A_uc011ayr.1_Missense_Mutation_p.L1554I	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1608	Helical; Name=S3 of repeat IV; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ATGTCCGAGAGCACAGTGCCT	0.607													31	60					4.74835e-14	5.33807e-14	1	1	0	
SCN5A	6331	broad.mit.edu	37	3	38628975	38628975	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:38628975G>A	uc003cio.2	-	15	2546	c.2352C>T	c.(2350-2352)TTC>TTT	p.F784F	SCN5A_uc003cin.2_Silent_p.F784F|SCN5A_uc003cil.3_Silent_p.F784F|SCN5A_uc010hhi.2_Silent_p.F784F|SCN5A_uc010hhk.2_Silent_p.F784F|SCN5A_uc011ayr.1_Silent_p.F784F|SCN5A_uc010hhj.1_Silent_p.F395F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	784	Helical; Name=S3 of repeat II; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGATGCTGTCGAAGATGTTCC	0.562													24	27					0	0	1	0	0	
SCN10A	6336	broad.mit.edu	37	3	38793713	38793713	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:38793713G>A	uc003ciq.2	-	11	1752	c.1752C>T	c.(1750-1752)GTC>GTT	p.V584V		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	584					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AACTCACCGAGACATCGACAG	0.483													25	65					0	0	1	0	0	
SCN11A	11280	broad.mit.edu	37	3	38961476	38961476	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:38961476C>A	uc011ays.1	-	7	1108	c.909G>T	c.(907-909)AAG>AAT	p.K303N		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	303	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AATTTTCTTTCTTTTCAAAGC	0.338													24	51					7.92952e-12	8.72397e-12	1	1	0	
XIRP1	165904	broad.mit.edu	37	3	39229433	39229433	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:39229433C>T	uc003cjk.1	-	2	1725	c.1504G>A	c.(1504-1506)GAG>AAG	p.E502K	XIRP1_uc003cji.2_Missense_Mutation_p.E502K|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	502							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		ACTATCTGCTCTCTGCTAACA	0.607													49	99					0	0	1	0	0	
CCR8	1237	broad.mit.edu	37	3	39373970	39373970	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:39373970C>A	uc010hhr.2	+	2	286	c.148C>A	c.(148-150)CTT>ATT	p.L50I	CCR8_uc003cjm.2_Intron	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	50	Helical; Name=1; (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		TGTATTCAGTCTTCTGGGAAA	0.488													24	179					3.01185e-09	3.22946e-09	1	1	0	
CTNNB1	1499	broad.mit.edu	37	3	41266826	41266826	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:41266826T>G	uc010hia.1	+	6	653	c.497T>G	c.(496-498)GTG>GGG	p.V166G	CTNNB1_uc003ckp.2_Missense_Mutation_p.V166G|CTNNB1_uc003ckq.2_Missense_Mutation_p.V166G|CTNNB1_uc003ckr.2_Missense_Mutation_p.V166G|CTNNB1_uc011azf.1_Missense_Mutation_p.V159G|CTNNB1_uc011azg.1_Missense_Mutation_p.V94G|uc010hib.1_5'Flank	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	166	ARM 1.				adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding	p.M1_V173del(1)|p.I35_K170del(1)	CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	GTATTACAGGTGGTGGTTAAT	0.418		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				15	32					0	0	1	0	0	
CTNNB1	1499	broad.mit.edu	37	3	41277291	41277291	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:41277291G>A	uc010hia.1	+	12	1916	c.1760G>A	c.(1759-1761)CGA>CAA	p.R587Q	CTNNB1_uc003ckp.2_Missense_Mutation_p.R587Q|CTNNB1_uc003ckq.2_Missense_Mutation_p.R587Q|CTNNB1_uc003ckr.2_Missense_Mutation_p.R587Q|CTNNB1_uc011azf.1_Missense_Mutation_p.R580Q|CTNNB1_uc011azg.1_Missense_Mutation_p.R515Q|CTNNB1_uc003cks.2_3'UTR|CTNNB1_uc003ckt.1_Missense_Mutation_p.R22Q	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	587					adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding		CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	GTTCACAACCGAATTGTTATC	0.408		15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				58	144					0	0	1	0	0	
ULK4	54986	broad.mit.edu	37	3	41756778	41756778	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:41756778C>T	uc003ckv.3	-	25	2786	c.2585G>A	c.(2584-2586)CGA>CAA	p.R862Q		NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	862	HEAT 1.						ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		AACTTGAGGTCGAAATACCTG	0.338													23	60					0	0	1	0	0	
ULK4	54986	broad.mit.edu	37	3	41957545	41957545	+	Splice_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:41957545C>A	uc003ckv.3	-	8	929	c.728_splice	c.e8-1	p.D243_splice	ULK4_uc003ckw.2_Splice_Site_p.D243_splice|ULK4_uc003ckx.1_Splice_Site_p.D243_splice	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4								ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CGAGAAGAATCTATAAATGAA	0.269													18	39					8.00594e-06	8.28612e-06	1	1	0	
CCK	885	broad.mit.edu	37	3	42305056	42305056	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:42305056C>T	uc003clc.1	-	2	276	c.67G>A	c.(67-69)GTG>ATG	p.V23M	CCK_uc003cld.1_Missense_Mutation_p.V23M|CCK_uc011azk.1_Missense_Mutation_p.V23M	NM_000729	NP_000720	P06307	CCKN_HUMAN	cholecystokinin preproprotein	23					axonogenesis|eating behavior|neuron migration		neuropeptide hormone activity			central_nervous_system(1)	1		Ovarian(412;0.0728)		KIRC - Kidney renal clear cell carcinoma(284;0.219)		GCGGGAGGCACCGGCTGCGTC	0.697													8	20					0	0	1	0	0	
NKTR	4820	broad.mit.edu	37	3	42680746	42680746	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:42680746G>A	uc003clo.2	+	13	3697	c.3550G>A	c.(3550-3552)GAA>AAA	p.E1184K	NKTR_uc003clm.1_Missense_Mutation_p.E931K|NKTR_uc003clp.2_Missense_Mutation_p.E931K|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Missense_Mutation_p.E1074K|NKTR_uc003clr.1_Missense_Mutation_p.E931K|NKTR_uc003cls.2_Missense_Mutation_p.E884K	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	1184					protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		CAGCATGTCCGAAAGTAAAGT	0.488													27	55					0	0	1	0	0	
NKTR	4820	broad.mit.edu	37	3	42684043	42684043	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:42684043G>A	uc003clo.2	+	14	4244	c.4097G>A	c.(4096-4098)CGA>CAA	p.R1366Q	NKTR_uc003clp.2_Missense_Mutation_p.R1113Q|NKTR_uc011azp.1_Missense_Mutation_p.R165Q|NKTR_uc003cls.2_Missense_Mutation_p.R1066Q	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	1366					protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		AGCAGAGGCCGAACCAGAAGC	0.433													33	62					0	0	1	0	0	
KBTBD5	131377	broad.mit.edu	37	3	42730438	42730438	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:42730438G>A	uc003clv.1	+	4	1599	c.1499G>A	c.(1498-1500)CGC>CAC	p.R500H		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	500	Kelch 3.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CAGACCGCCCGCTCACTCTTT	0.587													15	49					0	0	1	0	0	
CYP8B1	1582	broad.mit.edu	37	3	42916094	42916094	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:42916094G>A	uc003cmh.2	-	1	1540	c.1215C>T	c.(1213-1215)TAC>TAT	p.Y405Y	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Silent_p.Y405Y	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	405					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		GGAAGCGATCGTACTTGAAGA	0.557													56	140					0	0	1	0	0	
ZNF662	389114	broad.mit.edu	37	3	42956704	42956704	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:42956704G>A	uc003cmi.2	+	5	1491	c.1139G>A	c.(1138-1140)AGA>AAA	p.R380K	ZNF662_uc003cmk.2_Missense_Mutation_p.R406K|ZNF662_uc003cmj.2_Missense_Mutation_p.R272K	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	380	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		CGACATCAAAGAATCCATACT	0.463													33	66					0	0	1	0	0	
C3orf39	84892	broad.mit.edu	37	3	43121449	43121449	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:43121449G>A	uc003cmq.1	-	2	1616	c.1475C>T	c.(1474-1476)GCG>GTG	p.A492V	C3orf39_uc003cmr.1_Missense_Mutation_p.A492V	NM_032806	NP_116195	Q8NAT1	AGO61_HUMAN	glycosyltransferase precursor	492						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0571)|Kidney(284;0.0718)		ATGCACTGACGCCTGGCACCG	0.622													31	65					0	0	1	0	0	
ZNF445	353274	broad.mit.edu	37	3	44490137	44490137	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44490137C>T	uc003cnf.2	-	8	1374	c.1026G>A	c.(1024-1026)GCG>GCA	p.A342A	ZNF445_uc011azv.1_Silent_p.A330A|ZNF445_uc011azw.1_Silent_p.A342A	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	342					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		AAACACTTGTCGCAGGACATC	0.413													33	71					0	0	1	0	0	
ZNF445	353274	broad.mit.edu	37	3	44490186	44490186	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44490186T>C	uc003cnf.2	-	8	1325	c.977A>G	c.(976-978)GAA>GGA	p.E326G	ZNF445_uc011azv.1_Missense_Mutation_p.E314G|ZNF445_uc011azw.1_Missense_Mutation_p.E326G	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	326					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		TTCCAAAGGTTCCTGATTTAA	0.403													15	40					0	0	1	0	0	
ZNF167	55888	broad.mit.edu	37	3	44612641	44612641	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44612641T>C	uc010hin.2	+	6	2427	c.2039T>C	c.(2038-2040)GTA>GCA	p.V680A	ZNF167_uc003cni.2_Intron|ZNF167_uc010hio.2_Intron|ZNF167_uc003cnj.2_Missense_Mutation_p.V680A|ZNF167_uc003cnk.2_Intron	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	680	C2H2-type 11; degenerate.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		AGCCTTATGGTACATCAGAGA	0.418													49	102					0	0	1	0	0	
ZNF167	55888	broad.mit.edu	37	3	44612818	44612818	+	Missense_Mutation	SNP	G	A	A	rs151170690		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44612818G>A	uc010hin.2	+	6	2604	c.2216G>A	c.(2215-2217)CGA>CAA	p.R739Q	ZNF167_uc003cni.2_Intron|ZNF167_uc010hio.2_Intron|ZNF167_uc003cnj.2_Missense_Mutation_p.R739Q|ZNF167_uc003cnk.2_Intron	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	739	C2H2-type 13.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		CACCACCAGCGAACTCACACT	0.458													33	79					0	0	1	0	0	
ZNF35	7584	broad.mit.edu	37	3	44700935	44700935	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44700935G>A	uc003cnq.2	+	4	1301	c.1080G>A	c.(1078-1080)AAG>AAA	p.K360K	ZNF35_uc003cnr.2_Silent_p.K200K	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	360					cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		CTGGGGAGAAGCCCTTTGCCT	0.443													21	44					0	0	1	0	0	
ZNF35	7584	broad.mit.edu	37	3	44700985	44700985	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44700985T>G	uc003cnq.2	+	4	1351	c.1130T>G	c.(1129-1131)CTT>CGT	p.L377R	ZNF35_uc003cnr.2_Missense_Mutation_p.L217R	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	377	C2H2-type 6.				cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		AGTGCAAATCTTATTGTACAT	0.468													28	42					0	0	1	0	0	
ZNF35	7584	broad.mit.edu	37	3	44701252	44701252	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44701252G>T	uc003cnq.2	+	4	1618	c.1397G>T	c.(1396-1398)AGA>ATA	p.R466I	ZNF35_uc003cnr.2_Missense_Mutation_p.R306I	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	466	C2H2-type 9.				cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		ATTCATCAGAGAATTCATAAT	0.463													28	69					2.49675e-24	2.99771e-24	1	1	0	
ZNF502	91392	broad.mit.edu	37	3	44763241	44763241	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44763241C>T	uc011baa.1	+	4	1187	c.932C>T	c.(931-933)ACG>ATG	p.T311M	ZNF502_uc003cns.2_Missense_Mutation_p.T311M|ZNF502_uc011bab.1_Missense_Mutation_p.T311M|ZNF502_uc003cnt.2_Missense_Mutation_p.T311M	NM_001134440	NP_001127912	Q8TBZ5	ZN502_HUMAN	zinc finger protein 502	311	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00855)|KIRC - Kidney renal clear cell carcinoma(197;0.0471)|Kidney(197;0.0589)		TCAAATCTTACGCAACATCAG	0.403													79	132					0	0	1	0	0	
KIF15	56992	broad.mit.edu	37	3	44816777	44816777	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44816777C>T	uc003cnx.3	+	3	243	c.94C>T	c.(94-96)CGA>TGA	p.R32*	KIF15_uc010hiq.2_5'UTR	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	32	Kinesin-motor.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		AGTTTTTGTGCGAATTCGTCC	0.428													30	97					0	0	1	0	0	
KIF15	56992	broad.mit.edu	37	3	44816783	44816783	+	Missense_Mutation	SNP	C	T	T	rs144425306	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:44816783C>T	uc003cnx.3	+	3	249	c.100C>T	c.(100-102)CGT>TGT	p.R34C	KIF15_uc010hiq.2_5'UTR	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	34	Kinesin-motor.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		TGTGCGAATTCGTCCTCCTGC	0.438													33	102					0	0	1	0	0	
EXOSC7	23016	broad.mit.edu	37	3	45038655	45038655	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:45038655C>T	uc003coi.2	+	4	360	c.331C>T	c.(331-333)CGG>TGG	p.R111W	EXOSC7_uc003coh.1_Missense_Mutation_p.R46W|EXOSC7_uc011bae.1_Missense_Mutation_p.R111W|EXOSC7_uc010his.1_Missense_Mutation_p.R30W|EXOSC7_uc003coj.2_Missense_Mutation_p.R111W	NM_015004	NP_055819	Q15024	EXOS7_HUMAN	exosome component 7	111					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00911)|KIRC - Kidney renal clear cell carcinoma(197;0.0509)|Kidney(197;0.064)		CACCCTCTATCGGATATTTAA	0.448													38	88					0	0	1	0	0	
CCR9	10803	broad.mit.edu	37	3	45943167	45943167	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:45943167A>C	uc003coz.1	+	3	1044	c.887A>C	c.(886-888)GAC>GCC	p.D296A	LZTFL1_uc003coy.1_Intron|LZTFL1_uc011bak.1_Intron|CCR9_uc010hiv.1_Missense_Mutation_p.D284A|CCR9_uc003cpa.1_Missense_Mutation_p.D284A	NM_031200	NP_112477	P51686	CCR9_HUMAN	chemokine (C-C motif) receptor 9 isoform A	296	Extracellular (Potential).				cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane				ovary(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00118)|KIRC - Kidney renal clear cell carcinoma(197;0.0182)|Kidney(197;0.0214)		ACCAACATTGACATCTGCTTC	0.498													31	58					0	0	1	0	0	
CXCR6	10663	broad.mit.edu	37	3	45988319	45988319	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:45988319T>C	uc003cpc.1	+	2	427	c.346T>C	c.(346-348)TCC>CCC	p.S116P	FYCO1_uc003cpb.3_Intron|FYCO1_uc011bal.1_Intron|CXCR6_uc010hix.1_Missense_Mutation_p.S116P	NM_006564	NP_006555	O00574	CXCR6_HUMAN	G protein-coupled receptor TYMSTR	116	Helical; Name=3; (Potential).				viral genome replication	integral to plasma membrane	coreceptor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00113)|KIRC - Kidney renal clear cell carcinoma(197;0.0172)|Kidney(197;0.0203)		CTTCTACACGTCCATGCTCAT	0.522													83	242					0	0	1	0	0	
PRSS50	29122	broad.mit.edu	37	3	46754462	46754462	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:46754462G>A	uc003cqe.1	-	5	909	c.850C>T	c.(850-852)CCC>TCC	p.P284S	PRSS50_uc003cqf.1_Missense_Mutation_p.P198S	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50 precursor	284	Peptidase S1.				proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						ACCAGAGTGGGGATTTTGGTG	0.517													56	154					0	0	1	0	0	
SETD2	29072	broad.mit.edu	37	3	47125869	47125869	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:47125869T>C	uc003cqs.2	-	12	5454	c.5401A>G	c.(5401-5403)ATA>GTA	p.I1801V	SETD2_uc003cqv.2_Missense_Mutation_p.I1868V|SETD2_uc003cqt.1_RNA	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1801					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		AAAGTCTTTATAATCTGATTA	0.249			N|F|S|Mis		clear cell renal carcinoma								9	30					0	0	1	0	0	
SETD2	29072	broad.mit.edu	37	3	47164507	47164507	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:47164507C>T	uc003cqs.2	-	3	1672	c.1619G>A	c.(1618-1620)CGA>CAA	p.R540Q	SETD2_uc003cqv.2_Missense_Mutation_p.R529Q	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	540					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		TGACCCTCGTCGGAATCCCAG	0.358			N|F|S|Mis		clear cell renal carcinoma								52	98					0	0	1	0	0	
KIF9	64147	broad.mit.edu	37	3	47278109	47278109	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:47278109C>T	uc010hjp.2	-	19	2529	c.1925G>A	c.(1924-1926)GGC>GAC	p.G642D	KIF9_uc003cqx.2_Missense_Mutation_p.G642D|KIF9_uc003cqy.2_Missense_Mutation_p.G577D|KIF9_uc011bat.1_RNA|uc003cqw.1_Intron	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	642					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TTCGTACTTGCCTGCAAGGTG	0.507													16	21					0	0	1	0	0	
SMARCC1	6599	broad.mit.edu	37	3	47651782	47651782	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:47651782G>A	uc003crq.2	-	26	2935	c.2817C>T	c.(2815-2817)CGC>CGT	p.R939R	SMARCC1_uc011bbc.1_RNA|SMARCC1_uc011bbd.1_Silent_p.R830R	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	939	Potential.				chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		GGAAGTTTTGGCGTTCAGTAA	0.478													74	137					0	0	1	0	0	
SMARCC1	6599	broad.mit.edu	37	3	47730897	47730897	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:47730897T>C	uc003crq.2	-	13	1361	c.1243A>G	c.(1243-1245)ACA>GCA	p.T415A	SMARCC1_uc011bbd.1_Missense_Mutation_p.T306A	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	415					chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		GCTGTGACTGTTTCTTCATCC	0.398													7	34					0	0	1	0	0	
SMARCC1	6599	broad.mit.edu	37	3	47734780	47734780	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:47734780C>A	uc003crq.2	-	12	1294	c.1176G>T	c.(1174-1176)AAG>AAT	p.K392N	SMARCC1_uc011bbd.1_Missense_Mutation_p.K283N	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	392					chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		CACTATCTTTCTTTAGGTTCA	0.333													23	70					3.6726e-16	4.20841e-16	1	1	0	
DHX30	22907	broad.mit.edu	37	3	47891144	47891144	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:47891144A>G	uc003cru.2	+	21	3642	c.3216A>G	c.(3214-3216)CGA>CGG	p.R1072R	DHX30_uc003crt.2_Silent_p.R1033R	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	1072						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TACGGAGCCGATGGCTGACGT	0.632													36	42					0	0	1	0	0	
CAMP	820	broad.mit.edu	37	3	48266793	48266793	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:48266793G>T	uc003csj.1	+	4	532	c.392G>T	c.(391-393)AGA>ATA	p.R131I		NM_004345	NP_004336	P49913	CAMP_HUMAN	cathelicidin antimicrobial peptide	131					killing by host of symbiont cells|negative regulation of growth of symbiont on or near host surface	extracellular region				upper_aerodigestive_tract(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000614)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GATAACAAGAGATTTGCCCTG	0.468													72	152					1.52378e-38	1.88676e-38	1	1	0	
FBXW12	285231	broad.mit.edu	37	3	48420978	48420978	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:48420978T>C	uc003csr.2	+	7	890	c.704T>C	c.(703-705)GTA>GCA	p.V235A	FBXW12_uc010hjv.2_Missense_Mutation_p.V216A|FBXW12_uc003css.2_Missense_Mutation_p.V165A|FBXW12_uc010hjw.2_Missense_Mutation_p.V134A	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	235											0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TATGGTATTGTACTTCTACAC	0.423													82	152					0	0	1	0	0	
PLXNB1	5364	broad.mit.edu	37	3	48465339	48465339	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:48465339C>T	uc003csw.2	-	3	952	c.682G>A	c.(682-684)GCC>ACC	p.A228T	PLXNB1_uc003csu.2_Missense_Mutation_p.A228T|PLXNB1_uc003csx.2_Missense_Mutation_p.A228T|PLXNB1_uc010hjx.1_RNA	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	228	Extracellular (Potential).|Sema.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AGGAAGTAGGCGCTGGCCCCA	0.597													6	30					0	0	1	0	0	
COL7A1	1294	broad.mit.edu	37	3	48626118	48626118	+	Silent	SNP	G	A	A	rs139545952	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:48626118G>A	uc003ctz.2	-	19	2545	c.2544C>T	c.(2542-2544)GTC>GTT	p.V848V		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	848	Nonhelical region (NC1).|Fibronectin type-III 7.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CGCGGTCCCCGACAAGTGCAG	0.592													32	59					0	0	1	0	0	
CELSR3	1951	broad.mit.edu	37	3	48694593	48694593	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:48694593A>C	uc003cul.2	-	2	4218	c.3937T>G	c.(3937-3939)TTC>GTC	p.F1313V	CELSR3_uc003cuf.1_Missense_Mutation_p.F1383V	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1313	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGGATGTTGAAGATGAAGACG	0.657													16	28					0	0	1	0	0	
ARIH2	10425	broad.mit.edu	37	3	49006041	49006041	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:49006041G>T	uc003cvb.2	+	7	925	c.613G>T	c.(613-615)GAA>TAA	p.E205*	ARIH2_uc003cvc.2_Nonsense_Mutation_p.E205*|ARIH2_uc003cvf.2_Nonsense_Mutation_p.E123*|ARIH2_uc010hkl.2_Nonsense_Mutation_p.E205*	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	205					developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		TCCCAATGAAGAATTGAGAGA	0.478													61	128					8.50881e-52	1.05917e-51	1	1	0	
LAMB2	3913	broad.mit.edu	37	3	49162014	49162014	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:49162014C>T	uc003cwe.2	-	22	3440	c.3141G>A	c.(3139-3141)CCG>CCA	p.P1047P	LAMB2_uc003cwf.1_Silent_p.P1047P	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	1047	Laminin EGF-like 11.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GGCACTGCTGCGGATTTGTGC	0.597													10	16					0	0	1	0	0	
USP4	7375	broad.mit.edu	37	3	49321563	49321563	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:49321563A>G	uc003cwq.2	-	19	2476	c.2397T>C	c.(2395-2397)TGT>TGC	p.C799C	USP4_uc003cwo.2_Silent_p.C511C|USP4_uc003cwp.2_Silent_p.C529C|USP4_uc003cwr.2_Silent_p.C752C	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	799					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		TACAGTTGGGACAGTACCTAA	0.522													26	77					0	0	1	0	0	
USP4	7375	broad.mit.edu	37	3	49321951	49321951	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:49321951C>A	uc003cwq.2	-	18	2417	c.2338G>T	c.(2338-2340)GAC>TAC	p.D780Y	USP4_uc003cwo.2_Missense_Mutation_p.D492Y|USP4_uc003cwp.2_Missense_Mutation_p.D510Y|USP4_uc003cwr.2_Missense_Mutation_p.D733Y	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	780					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		TCGATGCAGTCTCTCAGGGCC	0.572													54	80					1.81118e-26	2.19096e-26	1	1	0	
DAG1	1605	broad.mit.edu	37	3	49548223	49548223	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:49548223T>G	uc003cxc.3	+	2	674	c.256T>G	c.(256-258)TTG>GTG	p.L86V		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	86	Required for laminin recognition.				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		TCCAACAGATTTGATTGCCTC	0.473													17	25					0	0	1	0	0	
BSN	8927	broad.mit.edu	37	3	49690676	49690676	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:49690676T>G	uc003cxe.3	+	5	3801	c.3687T>G	c.(3685-3687)TAT>TAG	p.Y1229*		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1229					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCTTCGAATATCAAGACACTA	0.667													12	25					0	0	1	0	0	
BSN	8927	broad.mit.edu	37	3	49693126	49693126	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:49693126G>A	uc003cxe.3	+	5	6251	c.6137G>A	c.(6136-6138)CGT>CAT	p.R2046H		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2046					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		ACGGACCTGCGTCATCCTACA	0.587													45	95					0	0	1	0	0	
AMIGO3	386724	broad.mit.edu	37	3	49755971	49755971	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:49755971C>T	uc003cxj.2	-	1	1268	c.928G>A	c.(928-930)GCC>ACC	p.A310T	RNF123_uc003cxh.2_Intron|RNF123_uc003cxi.2_Intron	NM_198722	NP_942015	Q86WK7	AMGO3_HUMAN	adhesion molecule with Ig-like domain 3	310	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion	integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GAAACCCAGGCAATGCGCATG	0.662													30	37					0	0	1	0	0	
TRAIP	10293	broad.mit.edu	37	3	49879261	49879261	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:49879261C>A	uc003cxs.1	-	7	721	c.615G>T	c.(613-615)AAG>AAT	p.K205N	TRAIP_uc010hla.1_Intron	NM_005879	NP_005870	Q9BWF2	TRAIP_HUMAN	TRAF interacting protein	205	Potential.				cell proliferation|induction of apoptosis	perinuclear region of cytoplasm	protein binding|zinc ion binding			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GTACGCACTTCTTGAGAGACA	0.527													16	38					2.23348e-06	2.32221e-06	1	1	0	
RBM6	10180	broad.mit.edu	37	3	50102503	50102503	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:50102503G>A	uc003cyc.2	+	16	2759	c.2626G>A	c.(2626-2628)GAC>AAC	p.D876N	RBM6_uc010hlc.1_Missense_Mutation_p.D395N|RBM6_uc003cyd.2_Missense_Mutation_p.D354N|RBM6_uc003cye.2_Missense_Mutation_p.D354N|RBM6_uc011bdi.1_Missense_Mutation_p.D218N|RBM6_uc010hld.1_RNA|RBM6_uc010hle.1_RNA|RBM6_uc010hlf.1_RNA	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	876					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		CCCTGCAGAAGACGTCTTTAA	0.498													64	151					0	0	1	0	0	
RBM6	10180	broad.mit.edu	37	3	50103758	50103758	+	Missense_Mutation	SNP	G	T	T	rs147895205	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:50103758G>T	uc003cyc.2	+	17	2899	c.2766G>T	c.(2764-2766)CAG>CAT	p.Q922H	RBM6_uc010hlc.1_3'UTR|RBM6_uc003cyd.2_Missense_Mutation_p.Q400H|RBM6_uc003cye.2_Missense_Mutation_p.Q400H|RBM6_uc011bdi.1_Missense_Mutation_p.Q264H|RBM6_uc010hld.1_RNA|RBM6_uc010hle.1_RNA|RBM6_uc010hlf.1_RNA	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	922					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		AGGAGGAACAGACCCCTCCCC	0.532													22	50					1.96292e-10	2.12899e-10	1	1	0	
SLC38A3	10991	broad.mit.edu	37	3	50254684	50254684	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:50254684A>G	uc003cyn.3	+	8	704	c.563A>G	c.(562-564)AAC>AGC	p.N188S	SLC38A3_uc011bdl.1_Missense_Mutation_p.N163S|SLC38A3_uc011bdm.1_Missense_Mutation_p.N119S	NM_006841	NP_006832	Q99624	S38A3_HUMAN	solute carrier family 38, member 3	188	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to plasma membrane	antiporter activity|L-alanine transmembrane transporter activity|L-asparagine transmembrane transporter activity|L-glutamine transmembrane transporter activity|L-histidine transmembrane transporter activity|symporter activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000275)|KIRC - Kidney renal clear cell carcinoma(197;0.00548)|Kidney(197;0.00615)	L-Asparagine(DB00174)|L-Glutamine(DB00130)|L-Histidine(DB00117)	TGGTACATGAACGGGAACTAC	0.363													3	18					0	0	1	0	0	
C3orf18	51161	broad.mit.edu	37	3	50597097	50597097	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:50597097G>T	uc003das.2	-	5	931	c.480C>A	c.(478-480)ATC>ATA	p.I160I	C3orf18_uc003dar.2_Silent_p.I160I|C3orf18_uc011bdr.1_RNA|C3orf18_uc010hlo.2_Silent_p.I140I|C3orf18_uc010hlp.2_5'UTR|C3orf18_uc003dat.2_Silent_p.I160I	NM_016210	NP_057294	Q9UK00	CC018_HUMAN	hypothetical protein LOC51161	160						integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.0175)|Kidney(197;0.0207)		CTCACGCATGGATGGCATTGG	0.592													4	5					2.56e-06	2.66102e-06	1	1	0	
HEMK1	51409	broad.mit.edu	37	3	50608616	50608616	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:50608616C>T	uc003dau.2	+	2	377	c.81C>T	c.(79-81)AGC>AGT	p.S27S	C3orf18_uc003dat.2_5'Flank|HEMK1_uc003dav.2_Silent_p.S27S|HEMK1_uc003daw.2_Silent_p.S27S	NM_016173	NP_057257	Q9Y5R4	HEMK1_HUMAN	HemK methyltransferase family member 1	27					DNA methylation		DNA binding|N-methyltransferase activity|protein methyltransferase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000283)|KIRC - Kidney renal clear cell carcinoma(197;0.0179)|Kidney(197;0.0212)		GGGCCTTCAGCTCATGGCAAC	0.617													25	36					0	0	1	0	0	
MAPKAPK3	7867	broad.mit.edu	37	3	50655008	50655008	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:50655008A>C	uc003day.1	+	4	608	c.12A>C	c.(10-12)GAA>GAC	p.E4D	MAPKAPK3_uc003daz.1_Missense_Mutation_p.E4D|MAPKAPK3_uc003dba.1_Missense_Mutation_p.E4D|MAPKAPK3_uc010hlr.1_Missense_Mutation_p.E4D	NM_004635	NP_004626	Q16644	MAPK3_HUMAN	mitogen-activated protein kinase-activated	4					activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.0188)|Kidney(197;0.0223)		TGGATGGTGAAACAGCAGAGG	0.721													17	32					0	0	1	0	0	
MAPKAPK3	7867	broad.mit.edu	37	3	50683628	50683628	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:50683628G>T	uc003day.1	+	10	1358	c.762G>T	c.(760-762)ATG>ATT	p.M254I	MAPKAPK3_uc003daz.1_Missense_Mutation_p.M254I|MAPKAPK3_uc003dba.1_Missense_Mutation_p.M254I|MAPKAPK3_uc010hlr.1_Missense_Mutation_p.M254I	NM_004635	NP_004626	Q16644	MAPK3_HUMAN	mitogen-activated protein kinase-activated	254	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.0188)|Kidney(197;0.0223)		CCCCGGGGATGAAGAGGAGGA	0.592													77	142					4.8811e-34	6.00931e-34	1	1	0	
DOCK3	1795	broad.mit.edu	37	3	51417640	51417640	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:51417640T>C	uc011bds.1	+	52	5606	c.5583_splice	c.e52+2	p.K1861_splice		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3							cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CTGCGCAAGGTAATGTACTGA	0.597													8	17					0	0	1	0	0	
RBM15B	29890	broad.mit.edu	37	3	51430882	51430882	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:51430882C>T	uc003dbd.2	+	1	2152	c.2052C>T	c.(2050-2052)AGC>AGT	p.S684S		NM_013286	NP_037418	Q8NDT2	RB15B_HUMAN	RNA binding motif protein 15B	684					interspecies interaction between organisms|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleoplasm	nucleotide binding|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000224)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CAAGAGACAGCGAGCGCAATC	0.582													32	55					0	0	1	0	0	
VPRBP	9730	broad.mit.edu	37	3	51497201	51497201	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:51497201T>G	uc003dbe.1	-	6	472	c.304A>C	c.(304-306)AAC>CAC	p.N102H	VPRBP_uc003dbg.1_Missense_Mutation_p.N102H	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	102					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		GCTGCAGTGTTTAAAGGGGGC	0.388													11	19					0	0	1	0	0	
GRM2	2912	broad.mit.edu	37	3	51743099	51743099	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:51743099C>T	uc010hlv.2	+	2	339	c.100C>T	c.(100-102)CTG>TTG	p.L34L	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	34	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	AGACTTGGTGCTGGGTGGGCT	0.642													22	32					0	0	1	0	0	
GRM2	2912	broad.mit.edu	37	3	51743227	51743227	+	Silent	SNP	G	A	A	rs140328919		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:51743227G>A	uc010hlv.2	+	2	467	c.228G>A	c.(226-228)CCG>CCA	p.P76P	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	76	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	ACCGTGACCCGCACCTGCTGC	0.632													70	102					0	0	1	0	0	
IQCF2	389123	broad.mit.edu	37	3	51897136	51897136	+	Missense_Mutation	SNP	C	T	T	rs147180778		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:51897136C>T	uc003dbt.1	+	3	283	c.245C>T	c.(244-246)TCG>TTG	p.S82L	IQCF1_uc003dbq.3_Intron|IQCF2_uc003dbu.1_RNA	NM_203424	NP_982248	Q8IXL9	IQCF2_HUMAN	IQ motif containing F2	82											0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		ATGACGCTGTCGAGGGTGCTG	0.612													31	58					0	0	1	0	0	
RPL29	6159	broad.mit.edu	37	3	52027960	52027960	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52027960T>G	uc003dcs.2	-	4	379	c.285A>C	c.(283-285)CGA>CGC	p.R95R		NM_000992	NP_000983	P47914	RL29_HUMAN	ribosomal protein L29	95					embryo implantation|endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	heparin binding|protein binding|RNA binding|structural constituent of ribosome				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TGTAGGCAAGTCGATCGAGCT	0.522													40	82					0	0	1	0	0	
DNAH1	25981	broad.mit.edu	37	3	52381902	52381902	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52381902G>T	uc011bef.1	+	12	2279	c.2018G>T	c.(2017-2019)AGC>ATC	p.S673I	DNAH1_uc003ddt.1_Missense_Mutation_p.S673I	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	673	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GTGCACTATAGCACCCCACTG	0.607													8	7					1.12685e-05	1.16379e-05	1	1	0	
DNAH1	25981	broad.mit.edu	37	3	52423500	52423500	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52423500C>T	uc011bef.1	+	60	9780	c.9519C>T	c.(9517-9519)TAC>TAT	p.Y3173Y	DNAH1_uc003ddv.2_Silent_p.Y31Y	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	3238					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CGGTGCTCTACGACAGCTGGG	0.592													8	9					0	0	1	0	0	
DNAH1	25981	broad.mit.edu	37	3	52433758	52433758	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52433758T>G	uc011bef.1	+	77	12900	c.12639T>G	c.(12637-12639)TTT>TTG	p.F4213L	DNAH1_uc003ddv.2_Missense_Mutation_p.F1046C	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	4278					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ACCAGGACTTTTACCTGTGCC	0.597													56	79					0	0	1	0	0	
BAP1	8314	broad.mit.edu	37	3	52441282	52441282	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52441282C>T	uc003ddx.2	-	7	603	c.488G>A	c.(487-489)CGG>CAG	p.R163Q	BAP1_uc010hmh.2_5'Flank	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	163					monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		CTCCATGGTCCGCACTGCACT	0.572			N|Mis|F|S|O		uveal melanoma|breast|NSCLC								22	47					0	0	1	0	0	
SEMA3G	56920	broad.mit.edu	37	3	52475391	52475391	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52475391C>A	uc003dea.1	-	7	702	c.702G>T	c.(700-702)GAG>GAT	p.E234D		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	234	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		GGTCAGAGTTCTCAGGGATCC	0.627													26	41					1.12875e-08	1.20353e-08	1	1	0	
NISCH	11188	broad.mit.edu	37	3	52505858	52505858	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52505858C>A	uc011beg.1	+	6	510	c.438C>A	c.(436-438)GTC>GTA	p.V146V	NISCH_uc003ded.3_Silent_p.V146V|NISCH_uc003dec.1_Silent_p.V146V	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	146	Necessary for homooligomerization and targeting to endosomes.				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CCGGCGAGGTCTTTGCCATTG	0.647											OREG0015615	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	36					6.33239e-15	7.18091e-15	1	1	0	
STAB1	23166	broad.mit.edu	37	3	52543302	52543302	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52543302C>T	uc003dej.2	+	22	2386	c.2312C>T	c.(2311-2313)TCG>TTG	p.S771L		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	771	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CACATCTGCTCGAACCCAAAC	0.577													9	35					0	0	1	0	0	
NT5DC2	64943	broad.mit.edu	37	3	52558592	52558592	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52558592T>C	uc003deo.2	-	14	1881	c.1457A>G	c.(1456-1458)TAC>TGC	p.Y486C	NT5DC2_uc003dem.2_Missense_Mutation_p.Y356C|NT5DC2_uc003den.2_Missense_Mutation_p.Y523C|NT5DC2_uc010hmi.2_Missense_Mutation_p.Y498C|NT5DC2_uc010hmj.2_Missense_Mutation_p.Y302C	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	486							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		ACGGCGTGGGTAGAAGGTGAA	0.622													27	55					0	0	1	0	0	
ITIH1	3697	broad.mit.edu	37	3	52824806	52824806	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52824806C>T	uc003dfs.2	+	20	2387	c.2363C>T	c.(2362-2364)TCT>TTT	p.S788F	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Missense_Mutation_p.S389F|ITIH1_uc010hmo.1_Missense_Mutation_p.S342F|ITIH1_uc003dfu.2_Missense_Mutation_p.S154F	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	788	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		CTGGTGGTGTCTGTGGACGAC	0.592													57	99					0	0	1	0	0	
ITIH3	3699	broad.mit.edu	37	3	52831835	52831835	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52831835C>T	uc003dfv.2	+	6	588	c.552C>T	c.(550-552)ATC>ATT	p.I184I	ITIH3_uc011bek.1_Silent_p.I184I	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	184					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		CATTTCAGATCGAGGTAGACA	0.532													4	9					0	0	1	0	0	
ITIH3	3699	broad.mit.edu	37	3	52836763	52836763	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52836763C>T	uc003dfv.2	+	13	1686	c.1650C>T	c.(1648-1650)TTC>TTT	p.F550F	ITIH3_uc011bek.1_Intron	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	550					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		ACTACATCTTCGGGAATTACA	0.602													21	30					0	0	1	0	0	
ITIH4	3700	broad.mit.edu	37	3	52859950	52859950	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52859950G>T	uc003dfz.2	-	6	747	c.711C>A	c.(709-711)CTC>CTA	p.L237L	ITIH4_uc011bel.1_5'UTR|ITIH4_uc003dfy.2_Silent_p.L101L|ITIH4_uc011bem.1_Silent_p.L237L|ITIH4_uc011ben.1_Silent_p.L237L	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	237					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		AGCGGATAATGAGGTTGCCGT	0.572													17	45					5.35267e-07	5.59727e-07	1	1	0	
ITIH4	3700	broad.mit.edu	37	3	52860836	52860836	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52860836G>A	uc003dfz.2	-	4	526	c.490C>T	c.(490-492)CGG>TGG	p.R164W	ITIH4_uc011bel.1_5'Flank|ITIH4_uc003dfy.2_Missense_Mutation_p.R40W|ITIH4_uc011bem.1_Missense_Mutation_p.R164W|ITIH4_uc011ben.1_Missense_Mutation_p.R164W	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	164					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		TGCTGGGGCCGCACTTTCAGC	0.617													25	39					0	0	1	0	0	
SFMBT1	51460	broad.mit.edu	37	3	52941623	52941623	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:52941623T>C	uc003dgf.2	-	19	2602	c.2033A>G	c.(2032-2034)AAG>AGG	p.K678R	SFMBT1_uc010hmr.2_Missense_Mutation_p.K625R|SFMBT1_uc003dgg.2_Missense_Mutation_p.K678R|SFMBT1_uc003dgh.2_Missense_Mutation_p.K678R	NM_001005159	NP_001005159	Q9UHJ3	SMBT1_HUMAN	Scm-like with four mbt domains 1	678					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.91e-05)|Kidney(197;0.000644)|KIRC - Kidney renal clear cell carcinoma(197;0.000792)|OV - Ovarian serous cystadenocarcinoma(275;0.113)		GCGTTTCTTCTTATGAACAAA	0.468													30	53					0	0	1	0	0	
PRKCD	5580	broad.mit.edu	37	3	53212512	53212512	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:53212512A>C	uc003dgl.2	+	3	427	c.74A>C	c.(73-75)CAG>CCG	p.Q25P	PRKCD_uc003dgm.2_Missense_Mutation_p.Q25P|PRKCD_uc003dgn.2_Missense_Mutation_p.Q25P	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	25	C2.				activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		GAGGCGAACCAGCCCTTCTGT	0.662													15	36					0	0	1	0	0	
CACNA1D	776	broad.mit.edu	37	3	53752369	53752369	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:53752369A>C	uc003dgv.3	+	10	1595	c.1432A>C	c.(1432-1434)AAC>CAC	p.N478H	CACNA1D_uc003dgu.3_Missense_Mutation_p.N478H|CACNA1D_uc003dgy.3_Missense_Mutation_p.N478H|CACNA1D_uc003dgw.3_Missense_Mutation_p.N125H	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	478	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GAACACAGAGAACGTCAGCGG	0.602													25	63					0	0	1	0	0	
CACNA1D	776	broad.mit.edu	37	3	53845206	53845206	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:53845206G>A	uc003dgv.3	+	48	6422	c.6259G>A	c.(6259-6261)GAA>AAA	p.E2087K	CACNA1D_uc003dgu.3_Missense_Mutation_p.E2107K|CACNA1D_uc003dgy.3_Missense_Mutation_p.E2063K|CACNA1D_uc003dgw.3_Missense_Mutation_p.E1754K|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	2087	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	AACAAAACACGAAATCGCTGA	0.552													26	66					0	0	1	0	0	
ACTR8	93973	broad.mit.edu	37	3	53914039	53914039	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:53914039A>C	uc003dhd.2	-	2	280	c.221T>G	c.(220-222)GTC>GGC	p.V74G	ACTR8_uc003dhb.2_5'Flank|ACTR8_uc003dhc.2_5'UTR	NM_022899	NP_075050	Q9H981	ARP8_HUMAN	actin-related protein 8	74					cell division|DNA recombination|DNA repair|mitosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex	protein binding			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000143)|KIRC - Kidney renal clear cell carcinoma(284;0.00544)|Kidney(284;0.00607)|OV - Ovarian serous cystadenocarcinoma(275;0.111)		TCGGGCAATGACGTGAGGAAT	0.473													60	123					0	0	1	0	0	
CACNA2D3	55799	broad.mit.edu	37	3	54157603	54157603	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:54157603T>C	uc003dhf.2	+	2	234	c.186T>C	c.(184-186)GGT>GGC	p.G62G	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_5'UTR|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	62	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGTACTCCGGTTCCCAGCTTC	0.488													36	56					0	0	1	0	0	
LRTM1	57408	broad.mit.edu	37	3	54952817	54952817	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:54952817G>A	uc003dhl.2	-	3	841	c.707C>T	c.(706-708)GCT>GTT	p.A236V	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	236	Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		TGGATCAGGAGCAGGAAGAGG	0.602													15	32					0	0	1	0	0	
CACNA2D3	55799	broad.mit.edu	37	3	55018657	55018657	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:55018657A>G	uc003dhf.2	+	30	2627	c.2579A>G	c.(2578-2580)GAC>GGC	p.D860G	CACNA2D3_uc003dhg.1_Missense_Mutation_p.D766G|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	860	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TACCTCATAGACAATAATGGA	0.368													2	1					0	0	1	0	0	
ERC2	26059	broad.mit.edu	37	3	56114904	56114904	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:56114904G>A	uc003dhr.1	-	7	1838	c.1582C>T	c.(1582-1584)CGT>TGT	p.R528C	ERC2_uc003dht.1_5'UTR	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	528	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TTCATGTCACGAATTTCACCG	0.398													15	22					0	0	1	0	0	
C3orf63	23272	broad.mit.edu	37	3	56657215	56657215	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:56657215C>T	uc003did.3	-	23	4781	c.4680G>A	c.(4678-4680)GGG>GGA	p.G1560G	C3orf63_uc003dib.3_Silent_p.G679G|C3orf63_uc003dic.3_Silent_p.G1184G|C3orf63_uc003die.3_3'UTR	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b	1621										ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		CATATGGTGTCCCCAAAAATG	0.343													22	85					0	0	1	0	0	
C3orf63	23272	broad.mit.edu	37	3	56661678	56661678	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:56661678T>G	uc003did.3	-	19	3880	c.3779A>C	c.(3778-3780)GAA>GCA	p.E1260A	C3orf63_uc003dib.3_Missense_Mutation_p.E379A|C3orf63_uc003dic.3_Missense_Mutation_p.E884A|C3orf63_uc003die.3_Missense_Mutation_p.E1321A	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b	1321										ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		TACAAATAATTCATTGTATGT	0.373													25	58					0	0	1	0	0	
C3orf63	23272	broad.mit.edu	37	3	56674012	56674012	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:56674012A>G	uc003did.3	-	16	2865	c.2764_splice	c.e16+1	p.D922_splice	C3orf63_uc003dic.3_Splice_Site_p.G526_splice|C3orf63_uc003die.3_Splice_Site_p.G922_splice	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b											ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		TACTTTTCTTACCTGTAATTG	0.378													12	17					0	0	1	0	0	
ARHGEF3	50650	broad.mit.edu	37	3	56763357	56763357	+	Missense_Mutation	SNP	G	A	A	rs115250058	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:56763357G>A	uc003dig.2	-	10	1691	c.1522C>T	c.(1522-1524)CGC>TGC	p.R508C	ARHGEF3_uc011bew.1_Missense_Mutation_p.R508C|ARHGEF3_uc003dih.2_Missense_Mutation_p.R540C|ARHGEF3_uc011bev.1_Missense_Mutation_p.R479C|ARHGEF3_uc003dif.2_Missense_Mutation_p.R514C|ARHGEF3_uc010hmy.1_Missense_Mutation_p.R306C	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	508					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		TGTTCCATGCGCTCACAGTCG	0.522													25	65					0	0	1	0	0	
HESX1	8820	broad.mit.edu	37	3	57232259	57232259	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:57232259G>A	uc003din.3	-	4	858	c.524C>T	c.(523-525)GCG>GTG	p.A175V		NM_003865	NP_003856	Q9UBX0	HESX1_HUMAN	HESX homeobox 1	175						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0109)|Kidney(284;0.0126)		ATTTTTTTTCGCCATTAGAAA	0.318													15	40					0	0	1	0	0	
APPL1	26060	broad.mit.edu	37	3	57269638	57269638	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:57269638T>G	uc003dio.2	+	2	246	c.99T>G	c.(97-99)ATT>ATG	p.I33M	APPL1_uc010hnb.2_Missense_Mutation_p.I33M|APPL1_uc011bey.1_Missense_Mutation_p.I16M	NM_012096	NP_036228	Q9UKG1	DP13A_HUMAN	adaptor protein, phosphotyrosine interaction, PH	33	Required for RAB5A binding.				apoptosis|cell cycle|cell proliferation|insulin receptor signaling pathway|regulation of apoptosis|regulation of establishment of protein localization in plasma membrane|regulation of glucose import	cytosol|early endosome membrane|microsome|nucleus|vesicle membrane	protein kinase B binding			breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0124)|Kidney(284;0.0144)		CCACAGCTATTTCCAACTATA	0.323													47	82					0	0	1	0	0	
APPL1	26060	broad.mit.edu	37	3	57283540	57283540	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:57283540G>A	uc003dio.2	+	11	1163	c.1016G>A	c.(1015-1017)CGA>CAA	p.R339Q	APPL1_uc010hnb.2_Missense_Mutation_p.R339Q|APPL1_uc011bey.1_Missense_Mutation_p.R322Q	NM_012096	NP_036228	Q9UKG1	DP13A_HUMAN	adaptor protein, phosphotyrosine interaction, PH	339	Required for RAB5A binding.|PH.				apoptosis|cell cycle|cell proliferation|insulin receptor signaling pathway|regulation of apoptosis|regulation of establishment of protein localization in plasma membrane|regulation of glucose import	cytosol|early endosome membrane|microsome|nucleus|vesicle membrane	protein kinase B binding			breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0124)|Kidney(284;0.0144)		GAAGACAGACGATATTGTTTT	0.393													38	74					0	0	1	0	0	
FAM116A	201627	broad.mit.edu	37	3	57616162	57616162	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:57616162C>T	uc003dja.2	-	18	1677	c.1606G>A	c.(1606-1608)GCT>ACT	p.A536T		NM_152678	NP_689891	Q8IWF6	F116A_HUMAN	hypothetical protein LOC201627	536										pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000621)|KIRC - Kidney renal clear cell carcinoma(284;0.0485)|Kidney(284;0.0607)		TCACAAAGAGCTTCTAGATGG	0.358													15	27					0	0	1	0	0	
FAM116A	201627	broad.mit.edu	37	3	57649398	57649398	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:57649398G>A	uc003dja.2	-	5	549	c.478C>T	c.(478-480)CGA>TGA	p.R160*		NM_152678	NP_689891	Q8IWF6	F116A_HUMAN	hypothetical protein LOC201627	160										pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000621)|KIRC - Kidney renal clear cell carcinoma(284;0.0485)|Kidney(284;0.0607)		GTTTTATCTCGAACTTGTCGG	0.294													27	68					0	0	1	0	0	
FAM116A	201627	broad.mit.edu	37	3	57651870	57651870	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:57651870C>A	uc003dja.2	-	4	483	c.412G>T	c.(412-414)GAT>TAT	p.D138Y		NM_152678	NP_689891	Q8IWF6	F116A_HUMAN	hypothetical protein LOC201627	138										pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000621)|KIRC - Kidney renal clear cell carcinoma(284;0.0485)|Kidney(284;0.0607)		ACTGGTAAATCTTTGTCAAAT	0.393													30	105					7.16923e-06	7.42482e-06	1	1	0	
SLMAP	7871	broad.mit.edu	37	3	57875781	57875781	+	Silent	SNP	C	T	T	rs139832644		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:57875781C>T	uc003dje.1	+	13	1468	c.1263C>T	c.(1261-1263)GTC>GTT	p.V421V	SLMAP_uc003djc.1_Silent_p.V417V|SLMAP_uc003djd.1_Silent_p.V404V|SLMAP_uc003djf.1_Silent_p.V383V|SLMAP_uc003djg.1_Intron|SLMAP_uc011bez.1_5'UTR|SLMAP_uc011bfa.1_5'UTR|SLMAP_uc003djh.2_5'UTR|SLMAP_uc003dji.1_5'UTR	NM_007159	NP_009090	Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	421	Cytoplasmic (Potential).				muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		AGCTGATCGTCGAAGGGCATC	0.408													38	53					0	0	1	0	0	
FLNB	2317	broad.mit.edu	37	3	58131773	58131773	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:58131773G>T	uc003djj.2	+	33	5716	c.5551G>T	c.(5551-5553)GAA>TAA	p.E1851*	FLNB_uc010hne.2_Nonsense_Mutation_p.E1882*|FLNB_uc003djk.2_Nonsense_Mutation_p.E1840*|FLNB_uc010hnf.2_Nonsense_Mutation_p.E1827*|FLNB_uc003djl.2_Nonsense_Mutation_p.E1671*|FLNB_uc003djm.2_Nonsense_Mutation_p.E1658*	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1851	Filamin 17.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGATGCAGGAGAAGGTACTGT	0.512													22	39					1.50039e-11	1.64695e-11	1	1	0	
FLNB	2317	broad.mit.edu	37	3	58134405	58134405	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:58134405G>A	uc003djj.2	+	36	6082	c.5917G>A	c.(5917-5919)GAA>AAA	p.E1973K	FLNB_uc010hne.2_Missense_Mutation_p.E2004K|FLNB_uc003djk.2_Missense_Mutation_p.E1962K|FLNB_uc010hnf.2_Missense_Mutation_p.E1949K|FLNB_uc003djl.2_Missense_Mutation_p.E1793K|FLNB_uc003djm.2_Missense_Mutation_p.E1780K|FLNB_uc010hng.1_5'Flank	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1973	Filamin 18.|Interaction with the cytoplasmic tail of GP1BA.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGAAGTGGGCGAACATCTGGT	0.572													22	49					0	0	1	0	0	
RPP14	11102	broad.mit.edu	37	3	58296086	58296086	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:58296086A>C	uc010hnh.2	+	2	458	c.30A>C	c.(28-30)AGA>AGC	p.R10S	RPP14_uc010hni.2_Intron|RPP14_uc003dju.3_Missense_Mutation_p.R10S|RPP14_uc003djv.3_Intron|RPP14_uc003djw.3_Intron	NM_001098783	NP_001092253	O95059	RPP14_HUMAN	ribonuclease P 14kDa subunit	10					tRNA processing	nucleus	identical protein binding|ribonuclease P activity|RNA binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000187)|KIRC - Kidney renal clear cell carcinoma(10;0.0102)|Kidney(10;0.0118)|OV - Ovarian serous cystadenocarcinoma(275;0.191)		CATATGAAAGAGTAGTTTACA	0.398													33	66					0	0	1	0	0	
PDHB	5162	broad.mit.edu	37	3	58417336	58417336	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:58417336G>A	uc003dkf.3	-	5	316	c.287C>T	c.(286-288)GCT>GTT	p.A96V	PDHB_uc003dke.3_Missense_Mutation_p.A54V|PDHB_uc003dkg.3_Missense_Mutation_p.A78V|PDHB_uc010hnl.2_Missense_Mutation_p.A78V|PDHB_uc011bff.1_Missense_Mutation_p.A96V	NM_000925	NP_000916	P11177	ODPB_HUMAN	pyruvate dehydrogenase (lipoamide) beta	96					glycolysis|regulation of acetyl-CoA biosynthetic process from pyruvate|tricarboxylic acid cycle	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(55;0.000179)|Kidney(10;0.00231)|KIRC - Kidney renal clear cell carcinoma(10;0.00258)|OV - Ovarian serous cystadenocarcinoma(275;0.187)	NADH(DB00157)|Pyruvic acid(DB00119)	TGCACCTACAGCAATTCCAGC	0.274													45	89					0	0	1	0	0	
C3orf67	200844	broad.mit.edu	37	3	58870367	58870367	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:58870367T>C	uc003dkt.1	-	7	653	c.244A>G	c.(244-246)ACA>GCA	p.T82A	uc003dku.1_Intron|C3orf67_uc003dkv.1_5'UTR|C3orf67_uc003dkw.2_5'UTR	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	82											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		GGAACATCTGTCATTAGTTGA	0.393													56	100					0	0	1	0	0	
PTPRG	5793	broad.mit.edu	37	3	62118333	62118333	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:62118333G>A	uc003dlb.2	+	6	1392	c.673G>A	c.(673-675)GTA>ATA	p.V225I	PTPRG_uc003dlc.2_Missense_Mutation_p.V225I	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	225	Extracellular (Potential).|Alpha-carbonic anhydrase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		GAAGGGTGTCGTACATCATGG	0.438													45	142					0	0	1	0	0	
CADPS	8618	broad.mit.edu	37	3	62522188	62522188	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:62522188C>T	uc003dll.2	-	12	2395	c.2035G>A	c.(2035-2037)GCT>ACT	p.A679T	CADPS_uc003dlk.1_Missense_Mutation_p.A183T|CADPS_uc003dlm.2_Missense_Mutation_p.A679T|CADPS_uc003dln.2_Missense_Mutation_p.A679T	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	679					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		AAGAGGGAAGCGTGGTCAAAG	0.398													55	115					0	0	1	0	0	
CADPS	8618	broad.mit.edu	37	3	62636621	62636621	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:62636621C>A	uc003dll.2	-	5	1464	c.1104G>T	c.(1102-1104)CAG>CAT	p.Q368H	CADPS_uc003dlm.2_Missense_Mutation_p.Q368H|CADPS_uc003dln.2_Missense_Mutation_p.Q368H	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	368					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		GTTTGAGTTTCTGGAGCTTGA	0.512													41	85					6.5261e-18	7.59833e-18	1	1	0	
PRICKLE2	166336	broad.mit.edu	37	3	64085446	64085446	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:64085446G>A	uc003dmf.2	-	8	2402	c.1816C>T	c.(1816-1818)CGC>TGC	p.R606C		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	606						cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		AGCAGGCTGCGAACTGACTCT	0.562													39	115					0	0	1	0	0	
ADAMTS9	56999	broad.mit.edu	37	3	64608121	64608121	+	Missense_Mutation	SNP	C	T	T	rs148570059		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:64608121C>T	uc003dmg.2	-	17	2563	c.2531G>A	c.(2530-2532)CGC>CAC	p.R844H	ADAMTS9_uc011bfo.1_Missense_Mutation_p.R816H|ADAMTS9_uc003dmh.1_Missense_Mutation_p.R673H|ADAMTS9_uc003dmk.1_Missense_Mutation_p.R844H	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	844	Spacer.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TTGCTCAATGCGATCTGTTGA	0.453													20	66					0	0	1	0	0	
ADAMTS9	56999	broad.mit.edu	37	3	64617528	64617528	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:64617528G>T	uc003dmg.2	-	15	2281	c.2249C>A	c.(2248-2250)TCT>TAT	p.S750Y	ADAMTS9_uc011bfo.1_Missense_Mutation_p.S722Y|ADAMTS9_uc003dmh.1_Missense_Mutation_p.S579Y|ADAMTS9_uc003dmk.1_Missense_Mutation_p.S750Y	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	750	Cys-rich.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TTTGCATGAAGAATTATCGCC	0.358													32	67					2.09667e-21	2.48674e-21	1	1	0	
SLC25A26	115286	broad.mit.edu	37	3	66293694	66293694	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:66293694G>T	uc011bfq.1	+	4	986	c.258G>T	c.(256-258)TTG>TTT	p.L86F	SLC25A26_uc011bfs.1_5'UTR|SLC25A26_uc011bft.1_RNA|SLC25A26_uc011bfr.1_Missense_Mutation_p.L86F|SLC25A26_uc003dmt.2_5'UTR	NM_173471	NP_775742	Q70HW3	SAMC_HUMAN	solute carrier family 25, member 26 isoform a	86	Solcar 2.|Helical; Name=3; (Potential).					integral to membrane|mitochondrial inner membrane|nucleus	S-adenosylmethionine transmembrane transporter activity			pancreas(1)	1		Lung NSC(201;0.00774)		BRCA - Breast invasive adenocarcinoma(55;0.00046)|KIRC - Kidney renal clear cell carcinoma(15;0.0515)|Kidney(15;0.0648)		CTTCATATTTGACACCTATGA	0.343													55	79					9.79885e-19	1.14675e-18	1	1	0	
LRIG1	26018	broad.mit.edu	37	3	66448589	66448589	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:66448589C>T	uc003dmx.2	-	11	1265	c.1251G>A	c.(1249-1251)GCG>GCA	p.A417A	LRIG1_uc011bfu.1_Silent_p.A37A|LRIG1_uc003dmw.2_Silent_p.A83A|LRIG1_uc010hnz.2_Silent_p.A133A|LRIG1_uc010hoa.2_Silent_p.A441A	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	417	Extracellular (Potential).|LRR 15.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		CAGATCTGATCGCATTCCCTC	0.428													38	61					0	0	1	0	0	
SUCLG2	8801	broad.mit.edu	37	3	67559310	67559310	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:67559310C>T	uc003dna.3	-	7	706	c.678G>A	c.(676-678)ACG>ACA	p.T226T	SUCLG2_uc010hob.2_Intron	NM_003848	NP_003839	Q96I99	SUCB2_HUMAN	succinate-CoA ligase, GDP-forming beta subunit	226	ATP-grasp.				succinyl-CoA metabolic process|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|GTP binding|succinate-CoA ligase (GDP-forming) activity			central_nervous_system(1)|skin(1)	2		Renal(2;0.00294)|Lung NSC(201;0.012)|Hepatocellular(537;0.121)		BRCA - Breast invasive adenocarcinoma(55;3.53e-05)|Epithelial(33;0.000153)	Succinic acid(DB00139)	TATACAGCTTCGTAATTTGAT	0.323													12	46					0	0	1	0	0	
LMOD3	56203	broad.mit.edu	37	3	69168243	69168243	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:69168243C>A	uc003dns.2	-	2	1472	c.1263G>T	c.(1261-1263)GAG>GAT	p.E421D	LMOD3_uc003dnt.2_Missense_Mutation_p.E421D	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	421	Potential.					cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		CCAACCCATTCTCTAACATGG	0.532													20	59					1.96292e-10	2.12899e-10	1	1	0	
LMOD3	56203	broad.mit.edu	37	3	69168701	69168701	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:69168701C>A	uc003dns.2	-	2	1014	c.805G>T	c.(805-807)GAA>TAA	p.E269*	LMOD3_uc003dnt.2_Nonsense_Mutation_p.E269*	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	269						cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		AGTAACATTTCTTTGGGGATG	0.408													68	120					2.05175e-36	2.5359e-36	1	1	0	
SHQ1	55164	broad.mit.edu	37	3	72881596	72881596	+	Missense_Mutation	SNP	C	A	A	rs143636968	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:72881596C>A	uc003dpf.2	-	5	630	c.523G>T	c.(523-525)GAT>TAT	p.D175Y	SHQ1_uc010hod.2_Missense_Mutation_p.D86Y	NM_018130	NP_060600	Q6PI26	SHQ1_HUMAN	SHQ1 homolog	175					ribonucleoprotein complex assembly	cytosol|nucleoplasm	protein binding			ovary(2)|large_intestine(1)	3		Prostate(10;0.00482)|Lung NSC(201;0.0339)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;9.68e-05)|Epithelial(33;0.000563)|LUSC - Lung squamous cell carcinoma(21;0.00229)|Lung(16;0.00688)|KIRC - Kidney renal clear cell carcinoma(39;0.018)|Kidney(39;0.0213)		GGGGTGAAATCTGGATCCTTA	0.403													34	84					2.42023e-17	2.79957e-17	1	1	0	
CNTN3	5067	broad.mit.edu	37	3	74411169	74411169	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:74411169C>A	uc003dpm.1	-	10	1316	c.1236G>T	c.(1234-1236)AAG>AAT	p.K412N		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	412	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TCATTGGATTCTTTGAAAAAT	0.458													21	59					3.51602e-12	3.88498e-12	1	1	0	
ROBO2	6092	broad.mit.edu	37	3	77526693	77526693	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:77526693C>T	uc003dpy.3	+	3	1160	c.517C>T	c.(517-519)CGA>TGA	p.R173*	ROBO2_uc003dpz.2_Nonsense_Mutation_p.R173*|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Nonsense_Mutation_p.R173*	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	173	Ig-like C2-type 2.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		AGACAAAGTTCGAATTGATGA	0.423													28	79					0	0	1	0	0	
ROBO2	6092	broad.mit.edu	37	3	77684173	77684173	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:77684173C>T	uc003dpy.3	+	24	4556	c.3913C>T	c.(3913-3915)CGA>TGA	p.R1305*	ROBO2_uc003dpz.2_Nonsense_Mutation_p.R1370*|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Nonsense_Mutation_p.R1309*	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1305	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		ATTGCCTCATCGAAGGGAAGG	0.483													25	48					0	0	1	0	0	
ROBO1	6091	broad.mit.edu	37	3	78649283	78649283	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:78649283C>A	uc003dqe.2	-	30	5129	c.4921G>T	c.(4921-4923)GAT>TAT	p.D1641Y	ROBO1_uc003dqb.2_Missense_Mutation_p.D1602Y|ROBO1_uc003dqc.2_Missense_Mutation_p.D1541Y|ROBO1_uc003dqd.2_Missense_Mutation_p.D1596Y|ROBO1_uc010hoh.2_Missense_Mutation_p.D833Y	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1641	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TCATTATTATCTTCTCCTCTT	0.368													17	19					5.3912e-06	5.59047e-06	1	1	0	
GBE1	2632	broad.mit.edu	37	3	81698040	81698040	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:81698040T>C	uc003dqg.2	-	6	941	c.658A>G	c.(658-660)ACA>GCA	p.T220A	GBE1_uc011bgm.1_Missense_Mutation_p.T179A	NM_000158	NP_000149	Q04446	GLGB_HUMAN	glucan (1,4-alpha-), branching enzyme 1	220					glucose metabolic process|glycogen biosynthetic process	cytosol	1,4-alpha-glucan branching enzyme activity|cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(3)	3		Lung NSC(201;0.0117)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0654)|Epithelial(33;0.00305)|LUSC - Lung squamous cell carcinoma(29;0.00646)|BRCA - Breast invasive adenocarcinoma(55;0.00813)|Lung(72;0.0129)|KIRC - Kidney renal clear cell carcinoma(39;0.212)|Kidney(39;0.247)		ACATTGCATGTAAAATGTTTA	0.328									Glycogen_Storage_Disease_type_IV				4	9					0	0	1	0	0	
EPHA3	2042	broad.mit.edu	37	3	89259419	89259419	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:89259419C>T	uc003dqy.2	+	3	788	c.563C>T	c.(562-564)GCT>GTT	p.A188V	EPHA3_uc003dqx.1_Missense_Mutation_p.A188V|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	188	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GATGTTGGTGCTTGTGTTGCC	0.443										TSP Lung(6;0.00050)			61	116					0	0	1	0	0	
STX19	415117	broad.mit.edu	37	3	93734063	93734063	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:93734063G>T	uc003drh.1	-	2	308	c.51C>A	c.(49-51)CTC>CTA	p.L17L	ARL13B_uc003drc.2_Intron|ARL13B_uc010hop.2_Intron|ARL13B_uc003drd.2_Intron|ARL13B_uc003dre.2_Intron|ARL13B_uc003drf.2_Intron|ARL13B_uc003drg.2_Intron	NM_001001850	NP_001001850	Q8N4C7	STX19_HUMAN	syntaxin 19	17					intracellular protein transport|vesicle-mediated transport	membrane	SNAP receptor activity				0						TGTCTCTAGAGAGTTCAATTT	0.393													34	69					3.67414e-24	4.4094e-24	1	1	0	
DHFRL1	200895	broad.mit.edu	37	3	93780181	93780181	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:93780181A>G	uc003dri.2	-	2	341	c.175T>C	c.(175-177)TTC>CTC	p.F59L	DHFRL1_uc003drj.2_Missense_Mutation_p.F59L|NSUN3_uc003drk.2_5'Flank|NSUN3_uc003drl.1_5'Flank	NM_176815	NP_789785	Q86XF0	DYRL1_HUMAN	dihydrofolate reductase-like 1	59	DHFR.				glycine biosynthetic process|nucleotide biosynthetic process|one-carbon metabolic process		dihydrofolate reductase activity|NADP binding				0						GGAATGGAGAACCAGGTCTTC	0.438													56	134					0	0	1	0	0	
EPHA6	285220	broad.mit.edu	37	3	96706417	96706417	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:96706417A>C	uc010how.1	+	3	737	c.694A>C	c.(694-696)ATT>CTT	p.I232L	EPHA6_uc003drp.1_Missense_Mutation_p.I232L	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	137	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GTCCCACGGAATTAAATTCAA	0.408													76	131					0	0	1	0	0	
EPHA6	285220	broad.mit.edu	37	3	97467501	97467501	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:97467501C>T	uc010how.1	+	18	3392	c.3349C>T	c.(3349-3351)CGT>TGT	p.R1117C		NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	1022	SAM.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						ACAGACTTTACGTTTACACAT	0.358													11	23					0	0	1	0	0	
CRYBG3	131544	broad.mit.edu	37	3	97598582	97598582	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:97598582G>T	uc003drx.2	+	2	1098	c.1034G>T	c.(1033-1035)AGA>ATA	p.R345I		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						TGTAACCCAAGACCTGGGAAG	0.313													15	28					0.000422831	0.000430665	1	1	0	
GABRR3	200959	broad.mit.edu	37	3	97744433	97744433	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:97744433G>A	uc011bgr.1	-	2	216	c.216C>T	c.(214-216)TTC>TTT	p.F72F		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	72	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						GTCTCATTGCGAAATCGTTGT	0.403													20	20					0	0	1	0	0	
OR5H15	403274	broad.mit.edu	37	3	97888229	97888229	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:97888229A>C	uc011bgu.1	+	1	686	c.686A>C	c.(685-687)AAA>ACA	p.K229T		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTAGAAAAGAAATCTGATAAG	0.383													25	47					0	0	1	0	0	
OR5K2	402135	broad.mit.edu	37	3	98217437	98217437	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:98217437C>A	uc011bgx.1	+	1	913	c.913C>A	c.(913-915)CTG>ATG	p.L305M		NM_001004737	NP_001004737	Q8NHB8	OR5K2_HUMAN	olfactory receptor, family 5, subfamily K,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						AAGAAAAATTCTGCTGAAAAT	0.294													15	21					3.27435e-08	3.46512e-08	1	1	0	
GPR15	2838	broad.mit.edu	37	3	98251081	98251082	+	Missense_Mutation	DNP	CG	TA	TA			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:98251081_98251082CG>TA	uc011bgy.1	+	1	204_205	c.204_205CG>TA	c.(202-207)ATCGAC>ATTAAC	p.D69N		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	69	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)		Lung(72;0.246)		GAAGACTGATCGACATCTTTAT	0.495													28	46					0	0	1	0	0	
ST3GAL6	10402	broad.mit.edu	37	3	98487301	98487301	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:98487301T>C	uc003dsz.2	+	2	253	c.17T>C	c.(16-18)GTG>GCG	p.V6A	ST3GAL6_uc003dsy.2_5'UTR|ST3GAL6_uc003dta.2_5'UTR|ST3GAL6_uc003dtb.2_Intron|ST3GAL6_uc003dtc.2_Missense_Mutation_p.V6A|ST3GAL6_uc010hpd.2_Missense_Mutation_p.V59A	NM_006100	NP_006091	Q9Y274	SIA10_HUMAN	alpha2,3-sialyltransferase VI	6	Helical; Signal-anchor for type II membrane protein; (Potential).				amino sugar metabolic process|glycolipid metabolic process|protein glycosylation|protein lipoylation	integral to Golgi membrane	sialyltransferase activity			ovary(1)	1						GGGTATCTTGTGGCCATATTC	0.383													59	84					0	0	1	0	0	
DCBLD2	131566	broad.mit.edu	37	3	98536721	98536721	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:98536721T>C	uc003dtd.2	-	9	1467	c.1104A>G	c.(1102-1104)GGA>GGG	p.G368G	DCBLD2_uc003dte.2_Silent_p.G368G	NM_080927	NP_563615	Q96PD2	DCBD2_HUMAN	discoidin, CUB and LCCL domain containing 2	368	Extracellular (Potential).|F5/8 type C.				cell adhesion|intracellular receptor mediated signaling pathway|negative regulation of cell growth|wound healing	cell surface|integral to plasma membrane				ovary(2)|central_nervous_system(1)	3						CCATGGTGGATCCAGTGGTTA	0.438													14	23					0	0	1	0	0	
FILIP1L	11259	broad.mit.edu	37	3	99568649	99568649	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:99568649T>G	uc003dtm.2	-	5	2334	c.1871A>C	c.(1870-1872)AAG>ACG	p.K624T	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.K624T|FILIP1L_uc010hpf.2_Missense_Mutation_p.K200T|FILIP1L_uc010hpg.2_Missense_Mutation_p.K384T|FILIP1L_uc003dtn.2_Missense_Mutation_p.K384T|FILIP1L_uc003dtp.1_Missense_Mutation_p.K384T	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	624	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						CTCCTTAATCTTATTGTTTTC	0.363													63	88					0	0	1	0	0	
FILIP1L	11259	broad.mit.edu	37	3	99648715	99648715	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:99648715C>A	uc003dtm.2	-	3	874	c.411G>T	c.(409-411)GAG>GAT	p.E137D	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.E137D	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	137						cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						TCATTGGTTTCTCATAGATGT	0.473													7	82					0.0293803	0.0295462	1	1	0	
C3orf26	84319	broad.mit.edu	37	3	99890693	99890693	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:99890693G>A	uc003dtl.2	+	7	672	c.529G>A	c.(529-531)GCA>ACA	p.A177T		NM_032359	NP_115735	Q9BQ75	CC026_HUMAN	hypothetical protein LOC84319	177							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(1)	1						GTCGATGACAGCATTCAGAGG	0.408													25	32					0	0	1	0	0	
LNP1	348801	broad.mit.edu	37	3	100170651	100170651	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:100170651T>C	uc003dtx.3	+	3	1525	c.245T>C	c.(244-246)GTA>GCA	p.V82A	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	82											0						CGTAGCCACGTACGGGATTAC	0.443													27	60					0	0	1	0	0	
LNP1	348801	broad.mit.edu	37	3	100174638	100174638	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:100174638G>T	uc003dtx.3	+	4	1685	c.405G>T	c.(403-405)AAG>AAT	p.K135N	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	135											0						AAAGCAGAAAGGAGAGAAATG	0.423													26	62					7.92952e-12	8.72397e-12	1	1	0	
ABI3BP	25890	broad.mit.edu	37	3	100511604	100511604	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:100511604C>A	uc003dun.2	-	23	1982	c.1897G>T	c.(1897-1899)GAC>TAC	p.D633Y	ABI3BP_uc003duj.2_Missense_Mutation_p.D188Y|ABI3BP_uc003duk.2_Missense_Mutation_p.D317Y|ABI3BP_uc003dul.2_Missense_Mutation_p.D438Y|ABI3BP_uc011bhd.1_Missense_Mutation_p.D587Y|ABI3BP_uc003dum.2_Missense_Mutation_p.D19Y	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	633	Pro-rich.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						GTGGATTGGTCTGTTTCTTCT	0.373													22	34					1.9806e-07	2.07987e-07	1	1	0	
ABI3BP	25890	broad.mit.edu	37	3	100605153	100605153	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:100605153C>T	uc003dun.2	-	5	582	c.497G>A	c.(496-498)CGC>CAC	p.R166H	ABI3BP_uc003duo.2_Missense_Mutation_p.R159H|ABI3BP_uc003dup.3_Missense_Mutation_p.R159H	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	166	Fibronectin type-III 1.					extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						TTCTCGATAGCGAATTGTATA	0.313													9	21					0	0	1	0	0	
ZBTB11	27107	broad.mit.edu	37	3	101395663	101395663	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:101395663T>G	uc003dve.3	-	1	326	c.96A>C	c.(94-96)AAA>AAC	p.K32N	ZBTB11_uc003dvf.2_Missense_Mutation_p.K32N|LOC100009676_uc003dvg.2_Missense_Mutation_p.F59V	NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	32					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTTTTCGGATTTTACGCTTGA	0.647													12	30					0	0	1	0	0	
FAM55C	91775	broad.mit.edu	37	3	101520806	101520806	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:101520806C>T	uc003dvn.2	+	5	1458	c.821C>T	c.(820-822)ACC>ATC	p.T274I	FAM55C_uc010hpn.2_Missense_Mutation_p.T274I	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	274						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						GGTCTCCTAACCGCTGCAGAG	0.468													25	166					0	0	1	0	0	
HHLA2	11148	broad.mit.edu	37	3	108072323	108072323	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:108072323C>T	uc003dwy.3	+	4	281	c.114C>T	c.(112-114)ATC>ATT	p.I38I	HHLA2_uc011bhl.1_Intron|HHLA2_uc010hpu.2_Silent_p.I38I|HHLA2_uc003dwz.2_Silent_p.I38I	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	38						integral to membrane				ovary(1)	1						ATGAACAAATCGTCATTGGAA	0.373													3	15					0	0	1	0	0	
HHLA2	11148	broad.mit.edu	37	3	108072555	108072555	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:108072555G>A	uc003dwy.3	+	4	513	c.346G>A	c.(346-348)GAA>AAA	p.E116K	HHLA2_uc011bhl.1_Missense_Mutation_p.E52K|HHLA2_uc010hpu.2_Missense_Mutation_p.E116K|HHLA2_uc003dwz.2_Missense_Mutation_p.E116K	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	116	Ig-like V-type 1.					integral to membrane				ovary(1)	1						CCTTCTGGACGAAGGAATTTA	0.398													15	37					0	0	1	0	0	
GUCA1C	9626	broad.mit.edu	37	3	108627035	108627035	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:108627035A>C	uc003dxj.2	-	4	532	c.464T>G	c.(463-465)TTT>TGT	p.F155C	GUCA1C_uc003dxk.2_Missense_Mutation_p.I168M	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	155	EF-hand 4.				signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						GCCATTGATAAATTCTTCTAA	0.388													19	37					0	0	1	0	0	
MORC1	27136	broad.mit.edu	37	3	108751664	108751664	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:108751664G>T	uc003dxl.2	-	16	1555	c.1468C>A	c.(1468-1470)CTT>ATT	p.L490I	MORC1_uc011bhn.1_Missense_Mutation_p.L490I	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	490	CW-type.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CTCCATTTAAGACAAAGATCT	0.333													24	42					1.10923e-09	1.19438e-09	1	1	0	
ZBED2	79413	broad.mit.edu	37	3	111312952	111312952	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:111312952C>A	uc003dxy.2	-	2	982	c.97G>T	c.(97-99)GAA>TAA	p.E33*	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	33							DNA binding|metal ion binding			skin(1)	1						CCAACCAGTTCTCCTGTCTCA	0.522													47	68					7.88023e-25	9.47942e-25	1	1	0	
CD96	10225	broad.mit.edu	37	3	111325554	111325554	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:111325554A>C	uc003dxw.2	+	9	1313	c.1143A>C	c.(1141-1143)GAA>GAC	p.E381D	CD96_uc003dxv.2_Missense_Mutation_p.E365D|CD96_uc003dxx.2_Missense_Mutation_p.E365D|CD96_uc010hpy.1_Missense_Mutation_p.E365D	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	381	Extracellular (Potential).|Pro/Ser/Thr-rich.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						AAGGTTCTGAAATTTCCTCAA	0.343									Opitz_Trigonocephaly_syndrome				21	55					0	0	1	0	0	
PHLDB2	90102	broad.mit.edu	37	3	111671489	111671489	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:111671489G>A	uc010hqa.2	+	11	3113	c.2702G>A	c.(2701-2703)CGA>CAA	p.R901Q	PHLDB2_uc003dyc.2_Missense_Mutation_p.R885Q|PHLDB2_uc003dyd.2_Missense_Mutation_p.R858Q|PHLDB2_uc003dyg.2_Missense_Mutation_p.R901Q|PHLDB2_uc003dyh.2_Missense_Mutation_p.R858Q|PHLDB2_uc003dyi.2_Intron	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	901						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						ACTTTGCCTCGAAAGAAAACC	0.448													40	51					0	0	1	0	0	
ABHD10	55347	broad.mit.edu	37	3	111700772	111700772	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:111700772C>T	uc003dyk.3	+	2	365	c.284C>T	c.(283-285)GCG>GTG	p.A95V	ABHD10_uc011bhq.1_Intron	NM_018394	NP_060864	Q9NUJ1	ABHDA_HUMAN	abhydrolase domain containing 10 precursor	95						mitochondrion	serine-type peptidase activity				0						AAAGCGTTGGCGATTGAGGAG	0.398													23	44					0	0	1	0	0	
SLC9A10	285335	broad.mit.edu	37	3	111898376	111898376	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:111898376A>G	uc003dyu.2	-	23	3141	c.2919_splice	c.e23+1	p.E973_splice	SLC9A10_uc011bhu.1_Splice_Site_p.E236_splice|SLC9A10_uc010hqc.2_Splice_Site_p.E925_splice	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger						cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						AGTTTTTCTGACCTCCACTAC	0.323													32	49					0	0	1	0	0	
SLC9A10	285335	broad.mit.edu	37	3	111921223	111921223	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:111921223T>G	uc003dyu.2	-	18	2418	c.2196A>C	c.(2194-2196)CAA>CAC	p.Q732H	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Missense_Mutation_p.Q684H	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	732					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						TATCTATTATTTGCAGCAACT	0.313													43	74					0	0	1	0	0	
CCDC80	151887	broad.mit.edu	37	3	112326098	112326098	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:112326098G>A	uc003dzf.2	-	7	2649	c.2431C>T	c.(2431-2433)CGC>TGC	p.R811C	CCDC80_uc011bhv.1_Intron|CCDC80_uc003dzg.2_Missense_Mutation_p.R811C|CCDC80_uc003dzh.1_Missense_Mutation_p.R811C	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	811										ovary(2)	2						GTTATGTGGCGCAGACCTGAG	0.373													23	54					0	0	1	0	0	
CCDC80	151887	broad.mit.edu	37	3	112358445	112358445	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:112358445C>A	uc003dzf.2	-	2	526	c.308G>T	c.(307-309)AGA>ATA	p.R103I	CCDC80_uc011bhv.1_Missense_Mutation_p.R103I|CCDC80_uc003dzg.2_Missense_Mutation_p.R103I|CCDC80_uc003dzh.1_Missense_Mutation_p.R103I	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	103										ovary(2)	2						TTGCTCAGGTCTCACGGCGGC	0.612													37	86					2.48696e-23	2.97679e-23	1	1	0	
CD200R1L	344807	broad.mit.edu	37	3	112546460	112546460	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:112546460A>C	uc003dzi.1	-	3	410	c.184T>G	c.(184-186)TTG>GTG	p.L62V	CD200R1L_uc011bhw.1_Missense_Mutation_p.L41V|CD200R1L_uc010hqf.1_Missense_Mutation_p.L41V	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	62	Ig-like V-type.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)	1						ATTATGATCAAATTTCTTAAT	0.398													41	100					0	0	1	0	0	
C3orf17	25871	broad.mit.edu	37	3	112730203	112730203	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:112730203A>T	uc003dzr.2	-	6	663	c.602T>A	c.(601-603)TTG>TAG	p.L201*	GTPBP8_uc011bhy.1_Intron|C3orf17_uc003dzq.2_5'Flank|C3orf17_uc011bhz.1_Intron|C3orf17_uc010hqh.2_Intron|C3orf17_uc003dzt.2_Nonsense_Mutation_p.L104*|C3orf17_uc003dzs.2_Nonsense_Mutation_p.L65*|C3orf17_uc010hqg.2_Nonsense_Mutation_p.L26*|C3orf17_uc011bia.1_Intron|C3orf17_uc003dzu.2_Nonsense_Mutation_p.L130*|C3orf17_uc011bib.1_Nonsense_Mutation_p.L90*|C3orf17_uc011bic.1_Nonsense_Mutation_p.L34*|C3orf17_uc011bid.1_RNA	NM_015412	NP_056227	Q6NW34	CC017_HUMAN	hypothetical protein LOC25871	201						integral to membrane					0						CAATCCAAACAAAGGCTCATA	0.348													47	98					0	0	1	0	0	
BOC	91653	broad.mit.edu	37	3	112999414	112999414	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:112999414G>A	uc003dzx.2	+	14	2833	c.2212G>A	c.(2212-2214)GCA>ACA	p.A738T	BOC_uc003dzy.2_Missense_Mutation_p.A738T|BOC_uc003dzz.2_Missense_Mutation_p.A739T|BOC_uc003eab.2_Missense_Mutation_p.A439T|BOC_uc003eac.2_Missense_Mutation_p.A53T	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	738	Fibronectin type-III 3.|Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			GTACATCCCAGCAAGTAACAA	0.423													34	71					0	0	1	0	0	
BOC	91653	broad.mit.edu	37	3	113005647	113005647	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:113005647A>G	uc003dzx.2	+	20	3904	c.3283A>G	c.(3283-3285)ATG>GTG	p.M1095V	BOC_uc003dzy.2_Missense_Mutation_p.M1095V|BOC_uc003dzz.2_Missense_Mutation_p.M1096V|BOC_uc003eab.2_Missense_Mutation_p.M796V|BOC_uc003eac.2_Intron	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	1095	Cytoplasmic (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			GGAACCTGGAATGCAGCTCTC	0.532													53	137					0	0	1	0	0	
SIDT1	54847	broad.mit.edu	37	3	113321949	113321949	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:113321949C>T	uc003eak.2	+	12	1866	c.1215C>T	c.(1213-1215)TTC>TTT	p.F405F	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Silent_p.F405F|SIDT1_uc011big.1_Silent_p.F158F|SIDT1_uc011bih.1_RNA|SIDT1_uc011bii.1_5'Flank	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	405	Cytoplasmic (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						AGAGCGACTTCGACACCATGC	0.557													22	61					0	0	1	0	0	
SIDT1	54847	broad.mit.edu	37	3	113322822	113322822	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:113322822T>C	uc003eak.2	+	13	1930	c.1279T>C	c.(1279-1281)TCA>CCA	p.S427P	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.S427P|SIDT1_uc011big.1_Missense_Mutation_p.S180P|SIDT1_uc011bih.1_RNA|SIDT1_uc011bii.1_5'Flank	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	427	Cytoplasmic (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						CCTTTACCTGTCAGATTTGTC	0.358													12	19					0	0	1	0	0	
KIAA2018	205717	broad.mit.edu	37	3	113377699	113377699	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:113377699A>C	uc003eam.2	-	7	3241	c.2830T>G	c.(2830-2832)TTG>GTG	p.L944V	KIAA2018_uc003eal.2_Missense_Mutation_p.L888V	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	944					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GATGGAATCAATACATTGGCT	0.423													68	136					0	0	1	0	0	
KIAA2018	205717	broad.mit.edu	37	3	113378349	113378349	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:113378349A>G	uc003eam.2	-	7	2591	c.2180T>C	c.(2179-2181)GTA>GCA	p.V727A	KIAA2018_uc003eal.2_Missense_Mutation_p.V671A	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	727					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						AGACAATTGTACACAGCTTTG	0.448													18	44					0	0	1	0	0	
ATP6V1A	523	broad.mit.edu	37	3	113497631	113497631	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:113497631G>A	uc003eao.2	+	2	97	c.31G>A	c.(31-33)GAT>AAT	p.D11N	ATP6V1A_uc011bik.1_5'UTR	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	11					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						CAAAATACTCGATGAAGATAA	0.294													15	26					0	0	1	0	0	
ATP6V1A	523	broad.mit.edu	37	3	113503563	113503563	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:113503563C>T	uc003eao.2	+	5	513	c.447C>T	c.(445-447)GGC>GGT	p.G149G	ATP6V1A_uc011bik.1_Silent_p.G116G	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	149					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						ATATCACTGGCGGAGACATTT	0.378													33	59					0	0	1	0	0	
IGSF11	152404	broad.mit.edu	37	3	118621425	118621425	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:118621425C>T	uc003ebw.2	-	7	1485	c.1238G>A	c.(1237-1239)CGA>CAA	p.R413Q	IGSF11_uc011biv.1_Missense_Mutation_p.R385Q|IGSF11_uc003ebx.2_Missense_Mutation_p.R389Q|IGSF11_uc003eby.2_Missense_Mutation_p.R412Q|IGSF11_uc003ebz.2_Missense_Mutation_p.R388Q|IGSF11_uc010hqs.2_Missense_Mutation_p.R412Q	NM_001015887	NP_001015887	Q5DX21	IGS11_HUMAN	immunoglobulin superfamily, member 11 isoform b	413	Cytoplasmic (Potential).				cell adhesion|regulation of growth	integral to membrane|plasma membrane	receptor activity				0						TGCACCAATTCGTTCCAGTGT	0.512													21	145					0	0	1	0	0	
IGSF11	152404	broad.mit.edu	37	3	118624560	118624560	+	Missense_Mutation	SNP	C	T	T	rs140836568	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:118624560C>T	uc003ebw.2	-	5	833	c.586G>A	c.(586-588)GTC>ATC	p.V196I	IGSF11_uc011biv.1_Missense_Mutation_p.V196I|IGSF11_uc003ebx.2_Missense_Mutation_p.V196I|IGSF11_uc003eby.2_Missense_Mutation_p.V195I|IGSF11_uc003ebz.2_Missense_Mutation_p.V195I|IGSF11_uc010hqs.2_Missense_Mutation_p.V195I	NM_001015887	NP_001015887	Q5DX21	IGS11_HUMAN	immunoglobulin superfamily, member 11 isoform b	196	Ig-like C2-type.|Extracellular (Potential).				cell adhesion|regulation of growth	integral to membrane|plasma membrane	receptor activity				0						GTTCCCTGGACCTGGTCTGTC	0.473													25	40					0	0	1	0	0	
ARHGAP31	57514	broad.mit.edu	37	3	119087355	119087355	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:119087355A>G	uc003ecj.3	+	3	872	c.340A>G	c.(340-342)AAA>GAA	p.K114E		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	114	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GCTCTATGAGAAATTCACGGT	0.468													22	38					0	0	1	0	0	
KTELC1	56983	broad.mit.edu	37	3	119211258	119211258	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:119211258T>C	uc003ecm.2	+	11	1236	c.1152T>C	c.(1150-1152)ATT>ATC	p.I384I	KTELC1_uc011bja.1_Silent_p.I225I	NM_152305	NP_689518	Q8NBL1	PGLT1_HUMAN	KTEL (Lys-Tyr-Glu-Leu) containing 1 precursor	384						endoplasmic reticulum lumen	UDP-glucosyltransferase activity				0				GBM - Glioblastoma multiforme(114;0.233)		ATCAAATTATTCCCAAAATGT	0.378													26	47					0	0	1	0	0	
C3orf1	51300	broad.mit.edu	37	3	119219697	119219697	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:119219697T>G	uc003ecn.2	+	2	563	c.350T>G	c.(349-351)TTT>TGT	p.F117C	C3orf1_uc003eco.2_RNA|C3orf1_uc003ecp.2_RNA	NM_016589	NP_057673	Q9NPL8	TIDC1_HUMAN	hypothetical protein LOC51300	117						integral to membrane|mitochondrial inner membrane	protein transporter activity				0				GBM - Glioblastoma multiforme(114;0.186)		CATAACCGGTTTGATGCTGTG	0.413													45	94					0	0	1	0	0	
C3orf15	89876	broad.mit.edu	37	3	119459596	119459596	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:119459596T>G	uc010hqy.1	+	13	1811	c.1734T>G	c.(1732-1734)ATT>ATG	p.I578M	C3orf15_uc003ede.3_Intron|C3orf15_uc010hqz.2_Intron|C3orf15_uc011bjd.1_Intron|C3orf15_uc011bje.1_Intron|C3orf15_uc010hra.1_Missense_Mutation_p.I339M	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	Error:Variant_position_missing_in_Q7Z4T9_after_alignment						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		CTCCCTTGATTTTATCATCAC	0.343													4	12					0	0	1	0	0	
GSK3B	2932	broad.mit.edu	37	3	119631622	119631622	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:119631622G>A	uc003edo.2	-	6	1627	c.644C>T	c.(643-645)TCG>TTG	p.S215L	GSK3B_uc003edn.2_Missense_Mutation_p.S215L	NM_001146156	NP_001139628	P49841	GSK3B_HUMAN	glycogen synthase kinase 3 beta isoform 2	215	Protein kinase.				axon guidance|epithelial to mesenchymal transition|ER overload response|glycogen metabolic process|hippocampus development|negative regulation of apoptosis|negative regulation of protein binding|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|positive regulation of cell-matrix adhesion|positive regulation of protein complex assembly|positive regulation of protein export from nucleus|positive regulation of Rac GTPase activity|regulation of microtubule-based process|superior temporal gyrus development	Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|nucleus|plasma membrane	ATP binding|beta-catenin binding|NF-kappaB binding|p53 binding|protein kinase A catalytic subunit binding|protein serine/threonine kinase activity|RNA polymerase II transcription factor binding|tau-protein kinase activity|ubiquitin protein ligase binding			lung(2)	2				GBM - Glioblastoma multiforme(114;0.24)	Lithium(DB01356)	ACAGATATACGAAACATTGGG	0.348													20	42					0	0	1	0	0	
GSK3B	2932	broad.mit.edu	37	3	119720900	119720900	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:119720900C>A	uc003edo.2	-	2	1258	c.275G>T	c.(274-276)AGA>ATA	p.R92I	GSK3B_uc003edn.2_Missense_Mutation_p.R92I	NM_001146156	NP_001139628	P49841	GSK3B_HUMAN	glycogen synthase kinase 3 beta isoform 2	92	Protein kinase.				axon guidance|epithelial to mesenchymal transition|ER overload response|glycogen metabolic process|hippocampus development|negative regulation of apoptosis|negative regulation of protein binding|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|positive regulation of cell-matrix adhesion|positive regulation of protein complex assembly|positive regulation of protein export from nucleus|positive regulation of Rac GTPase activity|regulation of microtubule-based process|superior temporal gyrus development	Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|nucleus|plasma membrane	ATP binding|beta-catenin binding|NF-kappaB binding|p53 binding|protein kinase A catalytic subunit binding|protein serine/threonine kinase activity|RNA polymerase II transcription factor binding|tau-protein kinase activity|ubiquitin protein ligase binding			lung(2)	2				GBM - Glioblastoma multiforme(114;0.24)	Lithium(DB01356)	TACCTTAAATCTCTTGTCCTG	0.323													52	100					2.01872e-29	2.46164e-29	1	1	0	
GPR156	165829	broad.mit.edu	37	3	119962867	119962867	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:119962867G>T	uc011bjf.1	-	1	79	c.79C>A	c.(79-81)CTC>ATC	p.L27I	GPR156_uc011bjg.1_Missense_Mutation_p.L27I	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	27	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		GTCTTGCAGAGATCATGAAGG	0.463													40	22					4.67007e-22	5.55902e-22	1	1	0	
LRRC58	116064	broad.mit.edu	37	3	120067729	120067729	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:120067729C>T	uc003edr.2	-	1	458	c.362G>A	c.(361-363)AGC>AAC	p.S121N		NM_001099678	NP_001093148	Q96CX6	LRC58_HUMAN	leucine rich repeat containing 58	121	LRR 4.										0				GBM - Glioblastoma multiforme(114;0.147)		CACCTGGAGGCTGCGGCAGAG	0.701													4	11					0	0	1	0	0	
HGD	3081	broad.mit.edu	37	3	120389326	120389326	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:120389326T>C	uc003edw.2	-	4	600	c.230A>G	c.(229-231)GAC>GGC	p.D77G		NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	77					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		TTGGCCTTCGTCAATGGATTC	0.423													27	62					0	0	1	0	0	
GTF2E1	2960	broad.mit.edu	37	3	120469443	120469443	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:120469443A>C	uc003edz.3	+	2	158	c.44A>C	c.(43-45)AAG>ACG	p.K15T	GTF2E1_uc003edy.2_Missense_Mutation_p.K15T	NM_005513	NP_005504	P29083	T2EA_HUMAN	general transcription factor IIE, polypeptide 1,	15	HTH TFE/IIEalpha-type.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.159)		GCAGCATTGAAGCGGTTAGCC	0.423													45	94					0	0	1	0	0	
STXBP5L	9515	broad.mit.edu	37	3	120760555	120760555	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:120760555G>T	uc003eec.3	+	4	436	c.296G>T	c.(295-297)AGA>ATA	p.R99I	STXBP5L_uc011bji.1_Missense_Mutation_p.R99I	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	99	WD 1.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGACTCGGGAGACCTGGTGTT	0.338													12	35					7.93312e-07	8.28085e-07	1	1	0	
POLQ	10721	broad.mit.edu	37	3	121215700	121215700	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121215700G>A	uc003eee.3	-	14	2362	c.2233C>T	c.(2233-2235)CGT>TGT	p.R745C		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	745					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		ATCTGCCCACGATTGCATCCA	0.363								DNA_polymerases_(catalytic_subunits)					49	68					0	0	1	0	0	
POLQ	10721	broad.mit.edu	37	3	121238807	121238807	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121238807C>T	uc003eee.3	-	9	1508	c.1379G>A	c.(1378-1380)CGA>CAA	p.R460Q		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	460	Helicase C-terminal.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		AATAGGGGTTCGAATAATCAC	0.468								DNA_polymerases_(catalytic_subunits)					81	152					0	0	1	0	0	
POLQ	10721	broad.mit.edu	37	3	121258410	121258410	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121258410T>C	uc003eee.3	-	4	630	c.501A>G	c.(499-501)AAA>AAG	p.K167K		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	167	Helicase ATP-binding.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		AACCGTCTACTTTTATTCCTA	0.398								DNA_polymerases_(catalytic_subunits)					30	47					0	0	1	0	0	
FBXO40	51725	broad.mit.edu	37	3	121340587	121340587	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121340587A>G	uc003eeg.2	+	3	521	c.311A>G	c.(310-312)AAT>AGT	p.N104S		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	104	TRAF-type.				muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		CGCTGGCCAAATGTGGACTCT	0.592													29	45					0	0	1	0	0	
FBXO40	51725	broad.mit.edu	37	3	121341621	121341621	+	Missense_Mutation	SNP	G	A	A	rs143267823		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121341621G>A	uc003eeg.2	+	3	1555	c.1345G>A	c.(1345-1347)GCT>ACT	p.A449T		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	449					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		TGACCTAACCGCTGCCACCCC	0.507													29	52					0	0	1	0	0	
HCLS1	3059	broad.mit.edu	37	3	121351279	121351279	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121351279G>A	uc003eeh.3	-	12	1265	c.1140C>T	c.(1138-1140)GAC>GAT	p.D380D	HCLS1_uc011bjj.1_Silent_p.D343D|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	380					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		TCTCCTCAACGTCCTCATAGT	0.433													77	170					0	0	1	0	0	
HCLS1	3059	broad.mit.edu	37	3	121354598	121354598	+	Silent	SNP	C	T	T	rs149333073	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121354598C>T	uc003eeh.3	-	9	800	c.675G>A	c.(673-675)ACG>ACA	p.T225T	HCLS1_uc011bjj.1_Silent_p.T188T|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	225					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		CTATGGGCGTCGTCTTCTTAT	0.537													43	87					0	0	1	0	0	
GOLGB1	2804	broad.mit.edu	37	3	121416180	121416180	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121416180C>A	uc003eei.3	-	13	3301	c.3175G>T	c.(3175-3177)GAA>TAA	p.E1059*	GOLGB1_uc010hrc.2_Nonsense_Mutation_p.E1064*|GOLGB1_uc003eej.3_Nonsense_Mutation_p.E1025*|GOLGB1_uc011bjm.1_Nonsense_Mutation_p.E945*|GOLGB1_uc010hrd.1_Nonsense_Mutation_p.E1023*	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1059	Cytoplasmic (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		AAATAAATTTCTATTTCTTGG	0.378													33	82					8.88839e-20	1.04617e-19	1	1	0	
GOLGB1	2804	broad.mit.edu	37	3	121417443	121417443	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121417443C>A	uc003eei.3	-	13	2038	c.1912G>T	c.(1912-1914)GAA>TAA	p.E638*	GOLGB1_uc010hrc.2_Nonsense_Mutation_p.E643*|GOLGB1_uc003eej.3_Nonsense_Mutation_p.E604*|GOLGB1_uc011bjm.1_Nonsense_Mutation_p.E524*|GOLGB1_uc010hrd.1_Nonsense_Mutation_p.E602*	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	638	Cytoplasmic (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		CTCGCCTGTTCTTTTTCAACT	0.373													47	88					1.0096e-33	1.24184e-33	1	1	0	
GOLGB1	2804	broad.mit.edu	37	3	121417683	121417683	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121417683C>T	uc003eei.3	-	13	1798	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	GOLGB1_uc010hrc.2_Missense_Mutation_p.E563K|GOLGB1_uc003eej.3_Missense_Mutation_p.E524K|GOLGB1_uc011bjm.1_Missense_Mutation_p.E444K|GOLGB1_uc010hrd.1_Missense_Mutation_p.E522K	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	558	Potential.|Cytoplasmic (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		ACTGATAATTCTTTATGTTTC	0.363													41	87					0	0	1	0	0	
CASR	846	broad.mit.edu	37	3	121980561	121980561	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:121980561C>T	uc003eev.3	+	4	1051	c.679C>T	c.(679-681)CGA>TGA	p.R227*	CASR_uc003eew.3_Nonsense_Mutation_p.R227*	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	227	Extracellular (Potential).		R -> Q (in FHH; impaired in their MAPK response to increasing extracellular calcium concentrations; less markedly impaired relative to wild-type then Leu- 227; when cotransfected with wild-type the curve is right-shifted intermediate to the curve for wild-type).		anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGAGAAATTCCGAGAGGAAGC	0.522													67	145					0	0	1	0	0	
PARP15	165631	broad.mit.edu	37	3	122335919	122335919	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:122335919C>T	uc003efm.2	+	6	974	c.908C>T	c.(907-909)GCA>GTA	p.A303V	PARP15_uc003efn.2_Intron|PARP15_uc003efo.1_Missense_Mutation_p.A50V|PARP15_uc003efp.1_Missense_Mutation_p.A69V|PARP15_uc011bjt.1_Missense_Mutation_p.A69V	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	281	Macro 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		AAAATCGGTGCAATTACTTTT	0.398													43	80					0	0	1	0	0	
PARP15	165631	broad.mit.edu	37	3	122340311	122340311	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:122340311T>G	uc003efm.2	+	8	1150	c.1084T>G	c.(1084-1086)TTT>GTT	p.F362V	PARP15_uc003efn.2_Missense_Mutation_p.F236V|PARP15_uc003efo.1_Missense_Mutation_p.F109V|PARP15_uc003efp.1_Missense_Mutation_p.F128V|PARP15_uc011bjt.1_Missense_Mutation_p.F128V	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	340	Macro 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		TCACAGAGATTTTATAATTAC	0.378													33	57					0	0	1	0	0	
PARP15	165631	broad.mit.edu	37	3	122345735	122345735	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:122345735C>A	uc003efm.2	+	9	1359	c.1293C>A	c.(1291-1293)TTC>TTA	p.F431L	PARP15_uc003efn.2_Intron|PARP15_uc003efo.1_Missense_Mutation_p.F178L|PARP15_uc003efp.1_Missense_Mutation_p.F197L|PARP15_uc011bjt.1_Intron	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	409	Macro 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		TTGTAGACTTCTCATCACAAC	0.353													24	45					5.35356e-11	5.83973e-11	1	1	0	
PARP14	54625	broad.mit.edu	37	3	122418266	122418266	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:122418266G>A	uc003efq.3	+	6	924	c.865G>A	c.(865-867)GAC>AAC	p.D289N	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.D6N|PARP14_uc003efs.1_Missense_Mutation_p.D6N	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	289					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		CACAAAACTCGACTTCAATAA	0.383													20	39					0	0	1	0	0	
DIRC2	84925	broad.mit.edu	37	3	122564623	122564623	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:122564623T>G	uc003efw.3	+	5	986	c.847T>G	c.(847-849)TTG>GTG	p.L283V	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Missense_Mutation_p.L121V	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	283	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		TTTTCGATTTTTGATGATTGC	0.343													10	25					0	0	1	0	0	
SEMA5B	54437	broad.mit.edu	37	3	122630371	122630371	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:122630371C>T	uc003efz.1	-	21	3362	c.3058G>A	c.(3058-3060)GCC>ACC	p.A1020T	SEMA5B_uc011bju.1_Missense_Mutation_p.A926T|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.A1020T|SEMA5B_uc003efy.1_5'UTR	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	1020	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		ATGCTGGAGGCTGGCAGGATG	0.637													5	12					0	0	1	0	0	
SEMA5B	54437	broad.mit.edu	37	3	122632771	122632771	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:122632771C>T	uc003efz.1	-	15	2370	c.2066G>A	c.(2065-2067)CGA>CAA	p.R689Q	SEMA5B_uc011bju.1_Missense_Mutation_p.R631Q|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.R689Q|SEMA5B_uc010hro.1_Missense_Mutation_p.R631Q|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	689	Extracellular (Potential).|TSP type-1 1.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GCTGCAACTTCGCTGGCGGAC	0.682													33	49					0	0	1	0	0	
PTPLB	201562	broad.mit.edu	37	3	123219414	123219414	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:123219414G>T	uc003egj.2	-	6	680	c.630C>A	c.(628-630)TTC>TTA	p.F210L		NM_198402	NP_940684	Q6Y1H2	HACD2_HUMAN	protein tyrosine phosphatase-like (proline	210	Lumenal (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	lyase activity|protein binding			kidney(1)	1				GBM - Glioblastoma multiforme(114;0.1)		AGTCAAAAGAGAAATTGTATT	0.358													16	32					4.7546e-09	5.08881e-09	1	1	0	
MYLK	4638	broad.mit.edu	37	3	123385191	123385191	+	Missense_Mutation	SNP	T	G	G	rs113124819	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:123385191T>G	uc003ego.2	-	22	3988	c.3706A>C	c.(3706-3708)ATG>CTG	p.M1236L	MYLK_uc010hrr.2_5'Flank|MYLK_uc011bjv.1_Missense_Mutation_p.M36L|MYLK_uc011bjw.1_Missense_Mutation_p.M1236L|MYLK_uc003egp.2_Missense_Mutation_p.M1167L|MYLK_uc003egq.2_Missense_Mutation_p.M1236L|MYLK_uc003egr.2_Missense_Mutation_p.M1167L|MYLK_uc003egs.2_Missense_Mutation_p.M1060L	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1236	Actin-binding (calcium/calmodulin- insensitive) (By similarity).				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TGAGGGGGCATTGCTGAGGGA	0.562													18	31					0	0	1	0	0	
MYLK	4638	broad.mit.edu	37	3	123419348	123419348	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:123419348C>A	uc003ego.2	-	18	3249	c.2967G>T	c.(2965-2967)AAG>AAT	p.K989N	MYLK_uc011bjw.1_Missense_Mutation_p.K989N|MYLK_uc003egp.2_Missense_Mutation_p.K920N|MYLK_uc003egq.2_Missense_Mutation_p.K989N|MYLK_uc003egr.2_Missense_Mutation_p.K920N|MYLK_uc003egs.2_Missense_Mutation_p.K813N|MYLK_uc003egt.2_Missense_Mutation_p.K180N	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	989	1-5; truncated.|5 X 28 AA approximate tandem repeats.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CTGGTAATTTCTTCTTGCCAC	0.592													27	57					3.73988e-18	4.36426e-18	1	1	0	
MYLK	4638	broad.mit.edu	37	3	123427629	123427629	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:123427629A>G	uc003ego.2	-	15	2338	c.2056T>C	c.(2056-2058)TTC>CTC	p.F686L	MYLK_uc011bjw.1_Missense_Mutation_p.F686L|MYLK_uc003egp.2_Missense_Mutation_p.F617L|MYLK_uc003egq.2_Missense_Mutation_p.F686L|MYLK_uc003egr.2_Missense_Mutation_p.F617L|MYLK_uc003egs.2_Missense_Mutation_p.F510L	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	686	Ig-like C2-type 5.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCCTCCGGGAACACTTCCTGG	0.572													44	89					0	0	1	0	0	
KALRN	8997	broad.mit.edu	37	3	124420922	124420922	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:124420922A>C	uc003ehg.2	+	57	8161	c.8034A>C	c.(8032-8034)GAA>GAC	p.E2678D	KALRN_uc003ehk.2_Missense_Mutation_p.E981D	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2677					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CTTGGAAGGAAAATTTTGACT	0.363													41	79					0	0	1	0	0	
UMPS	7372	broad.mit.edu	37	3	124462839	124462839	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:124462839C>T	uc003ehl.3	+	6	1457	c.1351C>T	c.(1351-1353)CGT>TGT	p.R451C	UMPS_uc003ehm.3_RNA|UMPS_uc011bka.1_Missense_Mutation_p.R273C|UMPS_uc011bkb.1_Missense_Mutation_p.R359C|UMPS_uc011bkc.1_Missense_Mutation_p.R273C|UMPS_uc003ehn.3_Missense_Mutation_p.R273C|UMPS_uc011bkd.1_Missense_Mutation_p.R176C	NM_000373	NP_000364	P11172	UMPS_HUMAN	uridine monophosphate synthase	451	OMPdecase.				'de novo' pyrimidine base biosynthetic process|'de novo' UMP biosynthetic process|pyrimidine nucleoside biosynthetic process	cytosol|nucleus	orotate phosphoribosyltransferase activity|orotidine-5'-phosphate decarboxylase activity			kidney(1)	1				GBM - Glioblastoma multiforme(114;0.146)		CATTGTAGGTCGTGGCATAAT	0.433													23	59					0	0	1	0	0	
HEG1	57493	broad.mit.edu	37	3	124739858	124739858	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:124739858G>A	uc003ehs.3	-	4	1098	c.1030C>T	c.(1030-1032)CGA>TGA	p.R344*	HEG1_uc011bke.1_Nonsense_Mutation_p.R344*	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	344	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GTCAAAGATCGCAGCGTTCTC	0.532													11	27					0	0	1	0	0	
ZXDC	79364	broad.mit.edu	37	3	126189737	126189737	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:126189737C>T	uc003eiv.2	-	4	1324	c.1270_splice	c.e4+1	p.G424_splice	ZXDC_uc010hsh.2_Splice_Site|ZXDC_uc003eix.2_Splice_Site_p.G424_splice	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1						positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		TTAAAATCTACCTTCCACAGG	0.438													28	58					0	0	1	0	0	
PLXNA1	5361	broad.mit.edu	37	3	126751319	126751319	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:126751319C>T	uc003ejg.2	+	29	5256	c.5252C>T	c.(5251-5253)TCG>TTG	p.S1751L	PLXNA1_uc003ejh.2_Missense_Mutation_p.S419L	NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1774	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		GCCTGCTTGTCGGTGGTGGCC	0.587													37	74					0	0	1	0	0	
PODXL2	50512	broad.mit.edu	37	3	127379708	127379708	+	Silent	SNP	C	T	T	rs114235935	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:127379708C>T	uc003ejq.2	+	3	861	c.837C>T	c.(835-837)TTC>TTT	p.F279F		NM_015720	NP_056535	Q9NZ53	PDXL2_HUMAN	podocalyxin-like 2 precursor	279	Extracellular (Potential).				leukocyte tethering or rolling	integral to plasma membrane	glycosaminoglycan binding|protein binding			ovary(1)|central_nervous_system(1)	2						GGGTAGAGTTCGAGGCTCCTC	0.617													14	41					0	0	1	0	0	
MGLL	11343	broad.mit.edu	37	3	127500727	127500727	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:127500727A>T	uc003ejx.2	-	3	282	c.137T>A	c.(136-138)TTT>TAT	p.F46Y	MGLL_uc003ejw.2_Missense_Mutation_p.F56Y|MGLL_uc011bko.1_Missense_Mutation_p.F56Y|MGLL_uc010hsp.1_Missense_Mutation_p.F46Y	NM_001003794	NP_001003794	Q99685	MGLL_HUMAN	monoglyceride lipase isoform 2	46					arachidonic acid metabolic process|fatty acid biosynthetic process|inflammatory response|platelet activation|regulation of endocannabinoid signaling pathway|regulation of inflammatory response|regulation of sensory perception of pain|triglyceride catabolic process	plasma membrane	acylglycerol lipase activity|carboxylesterase activity|lysophospholipase activity|protein homodimerization activity				0						ATGGGACACAAAGATGAGGGC	0.473													17	28					0	0	1	0	0	
RUVBL1	8607	broad.mit.edu	37	3	127823693	127823693	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:127823693G>A	uc003ekh.2	-	4	540	c.436C>T	c.(436-438)CCC>TCC	p.P146S	RUVBL1_uc003ekf.2_Missense_Mutation_p.P86S|RUVBL1_uc010hss.2_Missense_Mutation_p.P146S	NM_003707	NP_003698	Q9Y265	RUVB1_HUMAN	RuvB-like 1	146					cell division|CenH3-containing nucleosome assembly at centromere|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|mitosis|regulation of growth|regulation of transcription from RNA polymerase II promoter|spermatogenesis|transcription, DNA-dependent	Golgi apparatus|Ino80 complex|membrane|microtubule organizing center|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|DNA helicase activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.181)		CCTCCCATGGGATTCTCTGTC	0.348													32	51					0	0	1	0	0	
RPN1	6184	broad.mit.edu	37	3	128339383	128339383	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:128339383C>T	uc003ekr.1	-	10	1771	c.1695G>A	c.(1693-1695)TCG>TCA	p.S565S	RPN1_uc011bkq.1_Silent_p.S393S	NM_002950	NP_002941	P04843	RPN1_HUMAN	ribophorin I precursor	565	Cytoplasmic (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|melanosome|oligosaccharyltransferase complex|rough microsome	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(114;0.189)		CCTCCACCGCCGACTTCAGCA	0.587			T	EVI1	AML								35	92					0	0	1	0	0	
RAB7A	7879	broad.mit.edu	37	3	128525422	128525422	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:128525422G>A	uc003eks.1	+	4	620	c.388G>A	c.(388-390)GAA>AAA	p.E130K	RAB7A_uc010hsv.1_Intron|RAB7A_uc003ekt.2_Missense_Mutation_p.E106K	NM_004637	NP_004628	P51149	RAB7A_HUMAN	RAB7, member RAS oncogene family	130					endocytosis|endosome to lysosome transport|epidermal growth factor catabolic process|protein transport|small GTPase mediated signal transduction	Golgi apparatus|late endosome|lysosome|melanosome|phagocytic vesicle	GDP binding|GTP binding|GTPase activity|protein binding				0				GBM - Glioblastoma multiforme(114;0.231)		GATTGACCTCGAAAACAGACA	0.473													18	32					0	0	1	0	0	
KIAA1257	57501	broad.mit.edu	37	3	128706483	128706483	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:128706483C>T	uc003elj.3	-	4	839	c.643G>A	c.(643-645)GAC>AAC	p.D215N	KIAA1257_uc003elg.1_Missense_Mutation_p.D215N|KIAA1257_uc003eli.3_Missense_Mutation_p.D103N	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	215											0						GCTCCCACGTCGTCTGTGAAG	0.423													36	68					0	0	1	0	0	
C3orf37	56941	broad.mit.edu	37	3	129009603	129009603	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:129009603A>G	uc003elt.2	+	4	497	c.409A>G	c.(409-411)AGG>GGG	p.R137G	C3orf37_uc003elu.2_Intron|C3orf37_uc003elv.2_Missense_Mutation_p.R137G|C3orf37_uc003elw.2_Missense_Mutation_p.R137G	NM_020187	NP_064572	Q96FZ2	CC037_HUMAN	hypothetical protein LOC56941	137										ovary(1)	1						AACAAACCAGAGGCAGCCATA	0.428													35	76					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	3	129137112	129137112	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:129137112G>A	uc003emg.2	-	3	829	c.666C>T	c.(664-666)ATC>ATT	p.I222I		NM_207307	NP_997190			hypothetical protein LOC90288																		TTACAGCCGCGATGAACTCCT	0.557													12	18					0	0	1	0	0	
MBD4	8930	broad.mit.edu	37	3	129155520	129155520	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:129155520A>C	uc003emh.1	-	3	1143	c.967T>G	c.(967-969)TTT>GTT	p.F323V	MBD4_uc003emi.1_Missense_Mutation_p.F323V|MBD4_uc003emj.1_Missense_Mutation_p.F323V|MBD4_uc003emk.1_Intron|MBD4_uc011bkw.1_Missense_Mutation_p.F323V	NM_003925	NP_003916	O95243	MBD4_HUMAN	methyl-CpG binding domain protein 4	323					depyrimidination	nucleoplasm	DNA N-glycosylase activity|endodeoxyribonuclease activity|protein binding|satellite DNA binding			ovary(1)|lung(1)	2						TCAGAACAAAAATTTGATCCT	0.368								BER_DNA_glycosylases					53	79					0	0	1	0	0	
RHO	6010	broad.mit.edu	37	3	129247781	129247781	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:129247781C>T	uc003emt.2	+	1	300	c.205C>T	c.(205-207)CGC>TGC	p.R69C		NM_000539	NP_000530	P08100	OPSD_HUMAN	rhodopsin	69	Cytoplasmic.		Missing (in RP4).		protein-chromophore linkage|rhodopsin mediated signaling pathway	Golgi apparatus|integral to plasma membrane|photoreceptor inner segment membrane|photoreceptor outer segment membrane	G-protein coupled receptor activity|metal ion binding|photoreceptor activity|protein binding				0		all_neural(597;0.0227)|Myeloproliferative disorder(1037;0.0255)|Prostate(884;0.183)		GBM - Glioblastoma multiforme(114;2.58e-05)|Lung(219;0.0234)	Halothane(DB01159)	CAAGAAGCTGCGCACGCCTCT	0.567													45	72					0	0	1	0	0	
PLXND1	23129	broad.mit.edu	37	3	129277299	129277299	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:129277299C>A	uc003emx.2	-	33	5517	c.5417G>T	c.(5416-5418)TGC>TTC	p.C1806F	PLXND1_uc003emw.2_5'UTR|PLXND1_uc011blb.1_Missense_Mutation_p.C475F	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1806	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						AGAGATGGAGCAGGCGTCGAT	0.602													24	46					4.4004e-07	4.60384e-07	1	1	0	
PLXND1	23129	broad.mit.edu	37	3	129277343	129277343	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:129277343G>A	uc003emx.2	-	33	5473	c.5373C>T	c.(5371-5373)ATC>ATT	p.I1791I	PLXND1_uc003emw.2_5'UTR|PLXND1_uc011blb.1_Silent_p.I460I	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1791	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						GGCAGGCGTCGATGTGGTCTG	0.582													23	55					0	0	1	0	0	
PLXND1	23129	broad.mit.edu	37	3	129302495	129302495	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:129302495G>A	uc003emx.2	-	8	2256	c.2156C>T	c.(2155-2157)TCG>TTG	p.S719L		NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	719	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						CCACTGTGCCGACAGGCAGCT	0.582													18	19					0	0	1	0	0	
COL29A1	256076	broad.mit.edu	37	3	130095473	130095473	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130095473C>T	uc010htj.1	+	3	955	c.461C>T	c.(460-462)TCG>TTG	p.S154L	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	154	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen					0						GAAGAGGCTTCGAAAGCCCTG	0.502													6	20					0	0	1	0	0	
COL29A1	256076	broad.mit.edu	37	3	130095664	130095664	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130095664G>A	uc010htj.1	+	3	1146	c.652G>A	c.(652-654)GAT>AAT	p.D218N	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	218	Nonhelical region.				axon guidance|cell adhesion	collagen					0						GGGAGCCGTCGATGCTGATAT	0.473													7	26					0	0	1	0	0	
COL29A1	256076	broad.mit.edu	37	3	130159198	130159198	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130159198G>T	uc010htj.1	+	35	6510	c.6016G>T	c.(6016-6018)GAT>TAT	p.D2006Y	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.D45Y	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2006	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						AGACTCTGGTGATAGGATTGC	0.403													16	30					1.15088e-07	1.20949e-07	1	1	0	
COL6A6	131873	broad.mit.edu	37	3	130284283	130284283	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130284283C>T	uc010htl.2	+	3	1138	c.1107C>T	c.(1105-1107)GGC>GGT	p.G369G		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	369	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GCATAGAGGGCGCCAGCGACA	0.557													39	84					0	0	1	0	0	
COL6A6	131873	broad.mit.edu	37	3	130290173	130290173	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130290173T>G	uc010htl.2	+	6	2944	c.2913T>G	c.(2911-2913)ACT>ACG	p.T971T		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	971	VWFA 5.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TCGTGGAGACTTTTGGAGGTC	0.448													34	42					0	0	1	0	0	
COL6A6	131873	broad.mit.edu	37	3	130305384	130305384	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130305384A>G	uc010htl.2	+	10	4036	c.4005A>G	c.(4003-4005)GGA>GGG	p.G1335G	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1335	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CTCTGGATGGACCTGCTGATT	0.433													54	130					0	0	1	0	0	
COL6A6	131873	broad.mit.edu	37	3	130361855	130361855	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130361855C>T	uc010htl.2	+	30	5246	c.5215C>T	c.(5215-5217)CGA>TGA	p.R1739*	COL6A6_uc003eni.3_Silent_p.C2C	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1739	Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TCAGTATGTGCGAGACCGCAG	0.383													12	21					0	0	1	0	0	
COL6A6	131873	broad.mit.edu	37	3	130368016	130368016	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130368016T>G	uc010htl.2	+	32	5374	c.5343T>G	c.(5341-5343)GCT>GCG	p.A1781A	COL6A6_uc003eni.3_Intron	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1781	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AGATGATGGCTTTCCTGGTGA	0.582													4	9					0	0	1	0	0	
PIK3R4	30849	broad.mit.edu	37	3	130442276	130442276	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130442276C>T	uc003enj.2	-	7	2544	c.1963G>A	c.(1963-1965)GAA>AAA	p.E655K		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	655					fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						CTGGCAAATTCGTAAACATGG	0.338													27	67					0	0	1	0	0	
PIK3R4	30849	broad.mit.edu	37	3	130463973	130463973	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130463973T>G	uc003enj.2	-	2	671	c.90A>C	c.(88-90)AAA>AAC	p.K30N		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	30	Protein kinase.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						TCCCCAGGCTTTTATCATATT	0.443													22	40					0	0	1	0	0	
ASTE1	28990	broad.mit.edu	37	3	130743446	130743446	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:130743446G>T	uc003env.1	-	3	1147	c.705C>A	c.(703-705)TTC>TTA	p.F235L	NEK11_uc003enx.2_5'Flank|NEK11_uc003eny.2_5'Flank|NEK11_uc003eoa.2_5'Flank|NEK11_uc003enz.2_5'Flank|NEK11_uc010htn.2_5'Flank|NEK11_uc011blk.1_5'Flank|NEK11_uc011bll.1_5'Flank|NEK11_uc003enw.1_5'Flank|NEK11_uc011blm.1_5'Flank|ASTE1_uc010htm.1_Missense_Mutation_p.F235L|ASTE1_uc011blj.1_RNA	NM_014065	NP_054784	Q2TB18	ASTE1_HUMAN	asteroid homolog 1	235					DNA repair		nuclease activity				0						CTTTACTTAAGAATGTCTCCA	0.448													33	76					3.57733e-08	3.78477e-08	1	1	0	
DNAJC13	23317	broad.mit.edu	37	3	132172174	132172174	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:132172174T>C	uc003eor.2	+	7	635	c.570T>C	c.(568-570)ATT>ATC	p.I190I	DNAJC13_uc010htq.1_Silent_p.I190I|DNAJC13_uc003eos.1_5'Flank	NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	190							heat shock protein binding			ovary(1)|breast(1)	2						GAGAAGAGATTATTAAAAGTG	0.348													17	44					0	0	1	0	0	
DNAJC13	23317	broad.mit.edu	37	3	132241676	132241676	+	Missense_Mutation	SNP	G	A	A	rs139626514		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:132241676G>A	uc003eor.2	+	49	5743	c.5678G>A	c.(5677-5679)CGA>CAA	p.R1893Q		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1893							heat shock protein binding			ovary(1)|breast(1)	2						GTATAGGTTCGAATTACGTTA	0.323													13	25					0	0	1	0	0	
CCRL1	51554	broad.mit.edu	37	3	132320115	132320115	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:132320115G>A	uc003eow.2	+	2	957	c.874G>A	c.(874-876)GCA>ACA	p.A292T	ACAD11_uc003eov.3_Intron|ACAD11_uc011blr.1_Intron|CCRL1_uc003eox.2_Missense_Mutation_p.A292T	NM_016557	NP_057641	Q9NPB9	CCRL1_HUMAN	chemokine (C-C motif) receptor-like 1	292	Helical; Name=7; (Potential).				chemotaxis|immune response	integral to plasma membrane	C-C chemokine receptor activity				0						AGAAAGCATCGCACTCTTTCA	0.463													68	275					0	0	1	0	0	
NPHP3	27031	broad.mit.edu	37	3	132401613	132401613	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:132401613T>C	uc003epe.1	-	26	3823	c.3746A>G	c.(3745-3747)TAT>TGT	p.Y1249C	NPHP3_uc003eoz.1_Missense_Mutation_p.Y128C|NPHP3_uc003epd.1_Missense_Mutation_p.Y491C	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	1249	TPR 10.				maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						GCTATCTTCATAAATCTTTAA	0.343													41	75					0	0	1	0	0	
NPHP3	27031	broad.mit.edu	37	3	132403524	132403524	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:132403524C>T	uc003epe.1	-	24	3521	c.3444G>A	c.(3442-3444)AAG>AAA	p.K1148K	NPHP3_uc003eoz.1_Silent_p.K27K|NPHP3_uc003epd.1_Silent_p.K390K	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	1148	TPR 8.				maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						CATACTGTTTCTTTTCATTGC	0.428													29	51					0	0	1	0	0	
NPHP3	27031	broad.mit.edu	37	3	132415633	132415633	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:132415633G>A	uc003epe.1	-	15	2190	c.2113C>T	c.(2113-2115)CGT>TGT	p.R705C	NPHP3_uc003epd.1_Intron	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	705					maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						GTAGCAGAACGACAGTGTCGT	0.433													47	88					0	0	1	0	0	
NPHP3	27031	broad.mit.edu	37	3	132437924	132437924	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:132437924C>A	uc003epe.1	-	3	661	c.584G>T	c.(583-585)AGC>ATC	p.S195I	NPHP3_uc003epf.1_5'UTR	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	195	Potential.				maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						CTGAAGTTTGCTCTCCAACTC	0.393													37	83					1.59932e-28	1.94589e-28	1	1	0	
BFSP2	8419	broad.mit.edu	37	3	133185754	133185754	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:133185754C>T	uc003epn.1	+	5	1112	c.974C>T	c.(973-975)TCG>TTG	p.S325L		NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	325	Rod.|Potential.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						CACAACACTTCGTGCCAAGTC	0.562													33	63					0	0	1	0	0	
KY	339855	broad.mit.edu	37	3	134327586	134327586	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:134327586G>T	uc010hty.2	-	10	1057	c.995C>A	c.(994-996)TCT>TAT	p.S332Y	KY_uc011blw.1_Intron|KY_uc011blx.1_Missense_Mutation_p.S311Y|KY_uc003eqr.1_Missense_Mutation_p.S98Y	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	332						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						CTGCCTCAGAGATTGAGGAGG	0.483													38	57					4.00102e-26	4.83427e-26	1	1	0	
PPP2R3A	5523	broad.mit.edu	37	3	135863921	135863921	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:135863921C>A	uc003eqv.1	+	14	3931	c.3366C>A	c.(3364-3366)CCC>CCA	p.P1122P	PPP2R3A_uc011blz.1_Silent_p.P386P|PPP2R3A_uc003eqw.1_Silent_p.P501P	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	1122					protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						CTGCCTCTCCCTCTGAATTTG	0.353													15	33					2.61681e-11	2.86667e-11	1	1	0	
MSL2	55167	broad.mit.edu	37	3	135871511	135871511	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:135871511T>G	uc003eqx.1	-	2	945	c.212A>C	c.(211-213)AAA>ACA	p.K71T	MSL2_uc011bmb.1_5'UTR	NM_018133	NP_060603	Q9HCI7	MSL2_HUMAN	ring finger protein 184 isoform 1	71	RING-type.				histone H4-K16 acetylation	MSL complex	zinc ion binding			central_nervous_system(1)	1						TTTCTTGCCTTTACAAGTTTT	0.423													62	107					0	0	1	0	0	
PCCB	5096	broad.mit.edu	37	3	135974701	135974701	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:135974701A>G	uc003eqy.1	+	2	238	c.187A>G	c.(187-189)AAG>GAG	p.K63E	PCCB_uc003eqz.1_Missense_Mutation_p.K63E|PCCB_uc011bmc.1_Missense_Mutation_p.K63E|PCCB_uc011bmd.1_5'UTR	NM_000532	NP_000523	P05166	PCCB_HUMAN	propionyl Coenzyme A carboxylase, beta	63	Carboxyltransferase.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|propionyl-CoA carboxylase activity				0					Biotin(DB00121)|L-Valine(DB00161)	ATTGTAGGGAAAGCTAACAGC	0.483													26	73					0	0	1	0	0	
PCCB	5096	broad.mit.edu	37	3	136046553	136046553	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:136046553G>T	uc003eqy.1	+	13	1428	c.1377G>T	c.(1375-1377)GAG>GAT	p.E459D	PCCB_uc003eqz.1_Missense_Mutation_p.E459D|PCCB_uc011bmc.1_Missense_Mutation_p.E479D	NM_000532	NP_000523	P05166	PCCB_HUMAN	propionyl Coenzyme A carboxylase, beta	459	Carboxyltransferase.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|propionyl-CoA carboxylase activity				0					Biotin(DB00121)|L-Valine(DB00161)	CCACCGCAGAGATTGCAGTCA	0.517													18	29					4.35082e-09	4.66334e-09	1	1	0	
STAG1	10274	broad.mit.edu	37	3	136240172	136240172	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:136240172G>A	uc003era.1	-	7	851	c.559C>T	c.(559-561)CGA>TGA	p.R187*	STAG1_uc003erb.1_Nonsense_Mutation_p.R187*|STAG1_uc003erc.1_5'UTR|STAG1_uc010hua.1_Nonsense_Mutation_p.R50*|STAG1_uc003erd.2_Nonsense_Mutation_p.R90*|STAG1_uc003ere.2_Nonsense_Mutation_p.R187*	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	187					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						TGACACTGTCGAATCAGGACT	0.398													37	85					0	0	1	0	0	
NCK1	4690	broad.mit.edu	37	3	136646968	136646968	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:136646968G>A	uc003erh.2	+	2	232	c.125G>A	c.(124-126)CGA>CAA	p.R42Q	NCK1_uc011bme.1_5'Flank	NM_006153	NP_006144	P16333	NCK1_HUMAN	NCK adaptor protein 1	42	SH3 1.				axon guidance|positive regulation of actin filament polymerization|positive regulation of T cell proliferation|regulation of translation|signal complex assembly|T cell activation|T cell receptor signaling pathway	cytosol|endoplasmic reticulum|nucleus	cytoskeletal adaptor activity|receptor binding|receptor signaling complex scaffold activity			pancreas(1)	1						TGGCGAGTTCGAAATTCCATG	0.393													46	62					0	0	1	0	0	
DZIP1L	199221	broad.mit.edu	37	3	137811252	137811252	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:137811252G>A	uc003erq.2	-	5	1206	c.843C>T	c.(841-843)GTC>GTT	p.V281V	DZIP1L_uc003err.1_Silent_p.V281V	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	281	Potential.					intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						TCTGCTTGGCGACATTTTTAA	0.308													37	64					0	0	1	0	0	
ESYT3	83850	broad.mit.edu	37	3	138183346	138183346	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:138183346G>A	uc003esk.2	+	9	1301	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	359	C2 1.					integral to membrane|plasma membrane					0						CACCTGGAACGAAGTGTTTGA	0.582													24	45					0	0	1	0	0	
PIK3CB	5291	broad.mit.edu	37	3	138453486	138453486	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:138453486C>T	uc011bmq.1	-	5	962	c.962G>A	c.(961-963)CGA>CAA	p.R321Q		NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	321					activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						AGAAATAATTCGTGTTTTCTT	0.333													34	62					0	0	1	0	0	
COPB2	9276	broad.mit.edu	37	3	139085471	139085471	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:139085471T>G	uc003etf.3	-	15	1953	c.1823A>C	c.(1822-1824)AAG>ACG	p.K608T	COPB2_uc011bmv.1_Missense_Mutation_p.K579T|COPB2_uc010hui.2_Missense_Mutation_p.K579T	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	608					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						AGGAAGGACCTTATCAGCCAT	0.413													20	53					0	0	1	0	0	
TRIM42	287015	broad.mit.edu	37	3	140397213	140397213	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:140397213C>T	uc003eto.1	+	1	333	c.142C>T	c.(142-144)CGG>TGG	p.R48W		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	48	Cys-rich.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						CAAAGATGAGCGGAACTGCCA	0.542													64	116					0	0	1	0	0	
SLC25A36	55186	broad.mit.edu	37	3	140675425	140675425	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:140675425G>A	uc003etr.2	+	2	333	c.98G>A	c.(97-99)CGA>CAA	p.R33Q	SLC25A36_uc003etp.2_Missense_Mutation_p.R33Q|SLC25A36_uc003ets.2_Missense_Mutation_p.R33Q|SLC25A36_uc003etq.2_5'UTR|SLC25A36_uc011bmz.1_Missense_Mutation_p.R33Q	NM_001104647	NP_001098117	Q96CQ1	S2536_HUMAN	solute carrier family 25, member 36 isoform a	33	Solcar 1.				response to estradiol stimulus|transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						GTAAAAACACGACTGCAGTCA	0.418													23	56					0	0	1	0	0	
SLC25A36	55186	broad.mit.edu	37	3	140675523	140675523	+	Missense_Mutation	SNP	C	A	A	rs77926656		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:140675523C>A	uc003etr.2	+	2	431	c.196C>A	c.(196-198)CAT>AAT	p.H66N	SLC25A36_uc003etp.2_Missense_Mutation_p.H66N|SLC25A36_uc003ets.2_Missense_Mutation_p.H66N|SLC25A36_uc003etq.2_5'UTR|SLC25A36_uc011bmz.1_Missense_Mutation_p.H66N	NM_001104647	NP_001098117	Q96CQ1	S2536_HUMAN	solute carrier family 25, member 36 isoform a	66	Solcar 1.				response to estradiol stimulus|transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						CGGACCTCTTCATTGCCTAAA	0.423													38	92					1.61572e-30	1.9767e-30	1	1	0	
TFDP2	7029	broad.mit.edu	37	3	141682680	141682680	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:141682680G>T	uc003eun.3	-	10	1237	c.858C>A	c.(856-858)GTC>GTA	p.V286V	TFDP2_uc003euk.3_Silent_p.V199V|TFDP2_uc010hur.2_Silent_p.V226V|TFDP2_uc003eul.3_Silent_p.V226V|TFDP2_uc011bnf.1_Silent_p.V189V|TFDP2_uc011bng.1_Silent_p.V150V|TFDP2_uc003eum.3_Silent_p.V226V	NM_006286	NP_006277	Q14188	TFDP2_HUMAN	transcription factor Dp-2 (E2F dimerization	286	Dimerization (Potential).|DCB2.				cell cycle	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|transcription factor binding			kidney(1)	1						TGCAATCTATGACTGTTTTTC	0.448													49	93					1.3203e-36	1.6321e-36	1	1	0	
ATR	545	broad.mit.edu	37	3	142186856	142186856	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:142186856G>T	uc003eux.3	-	39	6729	c.6607C>A	c.(6607-6609)CAT>AAT	p.H2203N	ATR_uc003euy.1_Missense_Mutation_p.H89N	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2203					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TTTTTCATATGAATAGCTTTA	0.343								Other_conserved_DNA_damage_response_genes					37	91					1.36161e-19	1.60149e-19	1	1	0	
ATR	545	broad.mit.edu	37	3	142231276	142231276	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:142231276C>T	uc003eux.3	-	27	4800	c.4678G>A	c.(4678-4680)GAT>AAT	p.D1560N		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1560					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						GTATGCTGATCGTCATGCTTT	0.338								Other_conserved_DNA_damage_response_genes					37	73					0	0	1	0	0	
ATR	545	broad.mit.edu	37	3	142281952	142281952	+	Splice_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:142281952C>A	uc003eux.3	-	4	415	c.293_splice	c.e4-1	p.E98_splice		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein						cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TTACTGAATTCTTTGAAATAA	0.318								Other_conserved_DNA_damage_response_genes					40	78					4.92203e-23	5.88717e-23	1	1	0	
TRPC1	7220	broad.mit.edu	37	3	142525010	142525010	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:142525010G>A	uc003evc.2	+	13	2451	c.2315G>A	c.(2314-2316)CGA>CAA	p.R772Q	TRPC1_uc003evb.2_Missense_Mutation_p.R738Q	NM_003304	NP_003295	P48995	TRPC1_HUMAN	transient receptor potential cation channel,	772					axon guidance|cytosolic calcium ion homeostasis|positive regulation of release of sequestered calcium ion into cytosol|response to calcium ion	cytosol|integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TCAAAATTCCGAAATGAAATA	0.363													28	51					0	0	1	0	0	
SR140	23350	broad.mit.edu	37	3	142775251	142775251	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:142775251C>T	uc003evh.1	+	28	3148	c.3049C>T	c.(3049-3051)CCA>TCA	p.P1017S	SR140_uc003evi.1_Missense_Mutation_p.P608S|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Missense_Mutation_p.P1016S	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	1017					RNA processing	nucleus	nucleotide binding|RNA binding				0						GTCCAGATCTCCACACAGGTC	0.408													11	21					0	0	1	0	0	
SLC9A9	285195	broad.mit.edu	37	3	143271229	143271229	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:143271229G>A	uc003evn.2	-	9	1246	c.1064C>T	c.(1063-1065)TCG>TTG	p.S355L		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	355					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						TTTGGAATCCGAAGACAGATT	0.343													17	27					0	0	1	0	0	
SLC9A9	285195	broad.mit.edu	37	3	143550871	143550871	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:143550871A>G	uc003evn.2	-	2	550	c.368T>C	c.(367-369)ATA>ACA	p.I123T	SLC9A9_uc011bnk.1_Intron	NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	123					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						CTTTTCAAGTATAGCATTTCC	0.294													15	22					0	0	1	0	0	
C3orf58	205428	broad.mit.edu	37	3	143708552	143708552	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:143708552G>T	uc003evo.2	+	3	1697	c.1162G>T	c.(1162-1164)GAA>TAA	p.E388*	C3orf58_uc011bnl.1_Nonsense_Mutation_p.E179*	NM_173552	NP_775823	Q8NDZ4	CC058_HUMAN	hypothetical protein LOC205428 isoform a	388						COPI vesicle coat|extracellular region				ovary(1)	1						TCCACCAAGTGAAATTGCCAA	0.512													45	72					2.24893e-16	2.58354e-16	1	1	0	
PLSCR4	57088	broad.mit.edu	37	3	145917772	145917772	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:145917772T>G	uc010huy.2	-	6	781	c.452A>C	c.(451-453)CAG>CCG	p.Q151P	PLSCR4_uc010huz.2_Missense_Mutation_p.Q151P|PLSCR4_uc003evt.3_Missense_Mutation_p.Q151P|PLSCR4_uc010hva.2_Intron|PLSCR4_uc003evu.3_Intron	NM_001128305	NP_001121777	Q9NRQ2	PLS4_HUMAN	phospholipid scramblase 4 isoform a	151	Cytoplasmic (By similarity).				blood coagulation|phospholipid scrambling	integral to membrane	calcium ion binding|phospholipid scramblase activity|SH3 domain binding				0						GTAAACCATCTGGTCTGAGTT	0.363													13	35					0	0	1	0	0	
GYG1	2992	broad.mit.edu	37	3	148714244	148714244	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:148714244T>G	uc003ewn.2	+	3	352	c.299T>G	c.(298-300)TTC>TGC	p.F100C	GYG1_uc011bnp.1_Missense_Mutation_p.F100C|GYG1_uc003ewo.2_Missense_Mutation_p.F100C|GYG1_uc003ewp.2_Missense_Mutation_p.F100C	NM_004130	NP_004121	P46976	GLYG_HUMAN	glycogenin 1	100					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	glycogenin glucosyltransferase activity|metal ion binding|protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			AAATGTGTATTCATGGATGCA	0.443													32	67					0	0	1	0	0	
HLTF	6596	broad.mit.edu	37	3	148789221	148789221	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:148789221T>G	uc003ewq.1	-	7	930	c.712A>C	c.(712-714)ACA>CCA	p.T238P	HLTF_uc003ewr.1_Missense_Mutation_p.T238P|HLTF_uc003ews.1_Missense_Mutation_p.T238P|HLTF_uc010hve.1_Missense_Mutation_p.T238P	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	238					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			AGCAGTGGTGTTTCAATAGCC	0.363													21	33					0	0	1	0	0	
HPS3	84343	broad.mit.edu	37	3	148868424	148868424	+	Missense_Mutation	SNP	C	T	T	rs142082044		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:148868424C>T	uc003ewu.1	+	6	1342	c.1202C>T	c.(1201-1203)GCG>GTG	p.A401V	HPS3_uc003ewt.1_Missense_Mutation_p.A401V|HPS3_uc011bnq.1_Missense_Mutation_p.A236V	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	401						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			TGCAGTGCGGCGGCAGCTCGT	0.522									Hermansky-Pudlak_syndrome				21	45					0	0	1	0	0	
CP	1356	broad.mit.edu	37	3	148927157	148927157	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:148927157C>A	uc003ewy.3	-	4	875	c.622G>T	c.(622-624)GAA>TAA	p.E208*	CP_uc011bnr.1_RNA|CP_uc003ewx.3_5'UTR|CP_uc003ewz.2_Nonsense_Mutation_p.E208*|CP_uc010hvf.1_5'Flank	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	208	F5/8 type A 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	TTTTCTTTTTCTTTATCTAGA	0.303													25	41					1.64293e-13	1.8379e-13	1	1	0	
CP	1356	broad.mit.edu	37	3	148928079	148928079	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:148928079G>A	uc003ewy.3	-	3	735	c.482C>T	c.(481-483)GCC>GTC	p.A161V	CP_uc011bnr.1_RNA|CP_uc003ewx.3_5'Flank|CP_uc003ewz.2_Missense_Mutation_p.A161V|CP_uc010hvf.1_5'Flank	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	161	F5/8 type A 1.|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	TTCTTCAGTGGCAAGCAACAT	0.443													37	80					0	0	1	0	0	
WWTR1	25937	broad.mit.edu	37	3	149238736	149238736	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:149238736T>C	uc003exe.2	-	6	1075	c.1059A>G	c.(1057-1059)CAA>CAG	p.Q353Q	WWTR1_uc003exf.2_Silent_p.Q353Q|WWTR1_uc011bns.1_Silent_p.Q353Q|WWTR1_uc003exh.2_Silent_p.Q353Q	NM_015472	NP_056287	Q9GZV5	WWTR1_HUMAN	WW domain containing transcription regulator 1	353					hippo signaling cascade|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of protein kinase activity|negative regulation of protein phosphorylation|positive regulation of cell proliferation|positive regulation of epithelial to mesenchymal transition|regulation of SMAD protein import into nucleus|stem cell division|transcription, DNA-dependent	cytoplasm	transcription coactivator activity	p.Q353*(1)		breast(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			AACGGGTCTGTTGGGGATTGA	0.418													62	134					0	0	1	0	0	
TSC22D2	9819	broad.mit.edu	37	3	150176284	150176284	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:150176284C>A	uc003exv.2	+	4	2554	c.2204C>A	c.(2203-2205)TCT>TAT	p.S735Y	TSC22D2_uc003exw.2_RNA|TSC22D2_uc003exx.2_Missense_Mutation_p.S711Y	NM_014779	NP_055594	O75157	T22D2_HUMAN	TSC22 domain family, member 2	735							sequence-specific DNA binding transcription factor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			CTGTTAAAATCTCTTTCAAGC	0.398													49	119					1.67211e-32	2.05151e-32	1	1	0	
SIAH2	6478	broad.mit.edu	37	3	150460058	150460058	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:150460058G>A	uc003eyi.2	-	2	1472	c.845C>T	c.(844-846)TCG>TTG	p.S282L		NM_005067	NP_005058	O43255	SIAH2_HUMAN	seven in absentia homolog 2	282	SBD.				apoptosis|axon guidance|cell cycle|negative regulation of canonical Wnt receptor signaling pathway|small GTPase mediated signal transduction|ubiquitin-dependent protein catabolic process	cytosol|nucleus	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			GTCATGAATCGAACGGGGCGT	0.547													31	47					0	0	1	0	0	
CLRN1	7401	broad.mit.edu	37	3	150659437	150659437	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:150659437T>G	uc003eyk.1	-	2	656	c.365A>C	c.(364-366)AAT>ACT	p.N122T	CLRN1OS_uc011bny.1_Intron|CLRN1_uc003eyj.2_Missense_Mutation_p.N46T|CLRN1_uc010hvj.1_RNA	NM_174878	NP_777367	P58418	CLRN1_HUMAN	clarin 1 isoform a	122					equilibrioception|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			TCCAAAAGCATTGTACATGAA	0.428													24	42					0	0	1	0	0	
P2RY14	9934	broad.mit.edu	37	3	150931482	150931482	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:150931482G>A	uc003eyr.1	-	3	1101	c.623C>T	c.(622-624)GCT>GTT	p.A208V	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Missense_Mutation_p.A208V	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	208	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTTTGTGATAGCAGTATAGAA	0.403													40	96					0	0	1	0	0	
P2RY13	53829	broad.mit.edu	37	3	151045839	151045839	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:151045839C>T	uc003eyv.2	-	2	1026	c.1005G>A	c.(1003-1005)AAG>AAA	p.K335K	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_176894	NP_795713	Q9BPV8	P2Y13_HUMAN	purinergic receptor P2Y, G-protein coupled, 13	335						integral to membrane|plasma membrane				ovary(3)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0189)|Lung(72;0.0278)			ATGCTGTGGTCTTTCTCCCTT	0.363													51	112					0	0	1	0	0	
MED12L	116931	broad.mit.edu	37	3	151127057	151127057	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:151127057C>A	uc003eyp.2	+	38	5780	c.5742C>A	c.(5740-5742)CTC>CTA	p.L1914L	MED12L_uc011bnz.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1914	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGGCTGCTCTCTTTGCTGCGC	0.522													47	77					2.9001e-28	3.52487e-28	1	1	0	
IGSF10	285313	broad.mit.edu	37	3	151162770	151162770	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:151162770A>C	uc011bod.1	-	4	4999	c.4999T>G	c.(4999-5001)TTT>GTT	p.F1667V		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1667	Ig-like C2-type 3.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CAGGGAAGAAAGGCATCTGAG	0.413													36	78					0	0	1	0	0	
IGSF10	285313	broad.mit.edu	37	3	151166641	151166641	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:151166641T>G	uc011bod.1	-	4	1128	c.1128A>C	c.(1126-1128)CAA>CAC	p.Q376H		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	376					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AAGCCAAAATTTGCCACACTG	0.393													33	53					0	0	1	0	0	
AADAC	13	broad.mit.edu	37	3	151542473	151542473	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:151542473C>A	uc003eze.2	+	4	544	c.454C>A	c.(454-456)CAT>AAT	p.H152N		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	152	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			ACCTAAGTATCATTTCCCAAT	0.308													10	19					3.86212e-05	3.96572e-05	1	1	0	
TMEM14E	645843	broad.mit.edu	37	3	152058590	152058590	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:152058590G>A	uc010hvo.2	-	1	190	c.104C>T	c.(103-105)TCT>TTT	p.S35F	MBNL1_uc003ezh.2_Intron|MBNL1_uc003ezi.2_Intron|MBNL1_uc003ezj.2_Intron|MBNL1_uc003ezm.2_Intron|MBNL1_uc003ezl.2_Intron|MBNL1_uc003ezp.2_Intron|MBNL1_uc003ezn.2_Intron|MBNL1_uc003ezo.2_Intron	NM_001123228	NP_001116700	Q6UXP3	TM14E_HUMAN	transmembrane protein 14E	35						integral to membrane					0						GGACTGGACAGAACCTACTTT	0.507													34	60					0	0	1	0	0	
DHX36	170506	broad.mit.edu	37	3	154002448	154002448	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:154002448T>G	uc003ezy.3	-	19	2297	c.2216A>C	c.(2215-2217)AAG>ACG	p.K739T	DHX36_uc010hvq.2_Missense_Mutation_p.K725T|DHX36_uc003ezz.3_Intron	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	739						cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			ATCTGCAATCTTTTCTTTTCC	0.313													11	18					0	0	1	0	0	
DHX36	170506	broad.mit.edu	37	3	154002693	154002693	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:154002693C>A	uc003ezy.3	-	18	2196	c.2115G>T	c.(2113-2115)ATG>ATT	p.M705I	DHX36_uc010hvq.2_Missense_Mutation_p.M691I|DHX36_uc003ezz.3_Missense_Mutation_p.M705I	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	705						cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CAAAAAGAATCATTTTTCCAA	0.413													34	52					8.53417e-09	9.10905e-09	1	1	0	
DHX36	170506	broad.mit.edu	37	3	154042185	154042185	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:154042185C>A	uc003ezy.3	-	1	102	c.21G>T	c.(19-21)CAG>CAT	p.Q7H	DHX36_uc010hvq.2_Missense_Mutation_p.Q7H|DHX36_uc003ezz.3_Missense_Mutation_p.Q7H	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	7						cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			GGCCCCAGTTCTGATGGTAGT	0.657													5	11					0.0215528	0.0216931	1	1	0	
PLCH1	23007	broad.mit.edu	37	3	155282900	155282900	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:155282900C>T	uc011bok.1	-	7	1114	c.837G>A	c.(835-837)ACG>ACA	p.T279T	PLCH1_uc011boj.1_Silent_p.T279T|PLCH1_uc011bol.1_Silent_p.T261T	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	279					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GCATGAAGTTCGTGAAGCCTT	0.423													17	32					0	0	1	0	0	
PLCH1	23007	broad.mit.edu	37	3	155311814	155311814	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:155311814C>T	uc011bok.1	-	3	627	c.350G>A	c.(349-351)CGC>CAC	p.R117H	PLCH1_uc011boj.1_Missense_Mutation_p.R117H|PLCH1_uc011bol.1_Missense_Mutation_p.R99H	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	117	PH.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GATCCAGGTGCGGGCCTCCTC	0.562													16	42					0	0	1	0	0	
VEPH1	79674	broad.mit.edu	37	3	156983335	156983335	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:156983335G>T	uc003fbj.1	-	13	2562	c.2245C>A	c.(2245-2247)CTG>ATG	p.L749M	VEPH1_uc003fbk.1_Missense_Mutation_p.L749M|VEPH1_uc010hvu.1_Missense_Mutation_p.L704M	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	749	PH.					plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			TTTTGAAACAGAAGTTGATTT	0.378													24	67					9.57634e-11	1.04293e-10	1	1	0	
VEPH1	79674	broad.mit.edu	37	3	157081321	157081321	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:157081321C>A	uc003fbj.1	-	9	1884	c.1567G>T	c.(1567-1569)GAA>TAA	p.E523*	VEPH1_uc003fbk.1_Nonsense_Mutation_p.E523*|VEPH1_uc010hvu.1_Nonsense_Mutation_p.E523*	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	523						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			TTAACAGTTTCTGACAAATTC	0.393													15	126					1.3612e-06	1.41942e-06	1	1	0	
PTX3	5806	broad.mit.edu	37	3	157154792	157154792	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:157154792G>T	uc003fbl.3	+	1	213	c.70G>T	c.(70-72)GAT>TAT	p.D24Y	VEPH1_uc003fbj.1_Intron|VEPH1_uc003fbk.1_Intron|VEPH1_uc010hvu.1_Intron	NM_002852	NP_002843	P26022	PTX3_HUMAN	pentraxin 3 precursor	24					inflammatory response	extracellular region				central_nervous_system(1)	1			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			GGATGATTATGATCTCATGTA	0.458													45	94					2.37825e-27	2.88589e-27	1	1	0	
VEPH1	79674	broad.mit.edu	37	3	157188277	157188277	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:157188277G>T	uc003fbj.1	-	3	497	c.180C>A	c.(178-180)ATC>ATA	p.I60I	VEPH1_uc003fbk.1_Silent_p.I60I|VEPH1_uc010hvu.1_Silent_p.I60I|VEPH1_uc003fbm.2_Silent_p.I60I|VEPH1_uc003fbn.2_Silent_p.I60I	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	60						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			TTGTGATACAGATTTCAACTA	0.413													67	110					5.61366e-43	6.96669e-43	1	1	0	
MLF1	4291	broad.mit.edu	37	3	158314734	158314734	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:158314734C>T	uc003fcb.2	+	3	416	c.279C>T	c.(277-279)TTC>TTT	p.F93F	MLF1_uc003fbz.2_Silent_p.F68F|MLF1_uc003fca.2_Silent_p.F68F|MLF1_uc003fbx.2_Silent_p.F83F|MLF1_uc003fcc.2_Silent_p.F124F|MLF1_uc003fby.2_Silent_p.F19F|MLF1_uc010hvx.2_Silent_p.F68F	NM_022443	NP_071888	P58340	MLF1_HUMAN	myeloid leukemia factor 1 isoform 1	93	Interaction with COPS3.				cell cycle arrest|myeloid progenitor cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein domain specific binding				0		Melanoma(1037;0.000458)|Prostate(884;0.0235)|all_neural(597;0.0299)	Lung(72;0.00199)|LUSC - Lung squamous cell carcinoma(72;0.00256)			AAAGAAACTTCGTAAGTACTA	0.254			T	NPM1	AML								5	17					0	0	1	0	0	
MFSD1	64747	broad.mit.edu	37	3	158525240	158525240	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:158525240G>T	uc003fcl.1	+	5	458	c.428G>T	c.(427-429)AGA>ATA	p.R143I	MFSD1_uc003fcm.1_RNA|MFSD1_uc003fcn.1_Missense_Mutation_p.R46I|MFSD1_uc011bow.1_Missense_Mutation_p.R104I|MFSD1_uc011box.1_Missense_Mutation_p.R70I	NM_022736	NP_073573	Q9H3U5	MFSD1_HUMAN	major facilitator superfamily domain containing	143	Helical; (Potential).				transmembrane transport	integral to membrane					0			Lung(72;0.00372)|LUSC - Lung squamous cell carcinoma(72;0.00523)			GAATTTGGAAGATTTGTATTT	0.284													33	88					7.04047e-22	8.37091e-22	1	1	0	
SMC4	10051	broad.mit.edu	37	3	160122287	160122287	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:160122287T>G	uc003fdh.2	+	5	795	c.682T>G	c.(682-684)TTA>GTA	p.L228V	IFT80_uc003fda.2_Intron|SMC4_uc003fdf.1_RNA|SMC4_uc003fdg.1_Missense_Mutation_p.L228V|SMC4_uc010hwc.1_Intron|SMC4_uc003fdi.2_Missense_Mutation_p.L203V|SMC4_uc003fdj.2_Missense_Mutation_p.L228V|SMC4_uc010hwd.2_Missense_Mutation_p.L228V|uc011boz.1_5'Flank|MIR15B_hsa-mir-15b|MI0000438_5'Flank|uc003fdk.2_5'Flank|MIR16-2_hsa-mir-16-2|MI0000115_5'Flank	NM_001002800	NP_001002800	Q9NTJ3	SMC4_HUMAN	SMC4 structural maintenance of chromosomes	228					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	ATP binding|protein heterodimerization activity			ovary(1)|breast(1)	2			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			ATTTTTAATTTTACAGGTAAG	0.303													27	39					0	0	1	0	0	
SI	6476	broad.mit.edu	37	3	164758812	164758812	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:164758812C>T	uc003fei.2	-	18	2137	c.2075G>A	c.(2074-2076)CGC>CAC	p.R692H		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	692	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TAAGGTGTAGCGAATAGTTAA	0.373										HNSCC(35;0.089)			44	100					0	0	1	0	0	
SI	6476	broad.mit.edu	37	3	164758856	164758856	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:164758856C>T	uc003fei.2	-	18	2093	c.2031G>A	c.(2029-2031)CAG>CAA	p.Q677Q		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	677	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AAAGTGAATTCTGCCCAAAAA	0.338										HNSCC(35;0.089)			47	110					0	0	1	0	0	
ZBBX	79740	broad.mit.edu	37	3	167086357	167086357	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:167086357G>A	uc003fep.2	-	5	397	c.74C>T	c.(73-75)GCT>GTT	p.A25V	ZBBX_uc011bpc.1_Missense_Mutation_p.A25V|ZBBX_uc003feq.2_5'UTR	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	25	Potential.					intracellular	zinc ion binding			ovary(2)	2						CAGTTCTTGAGCATTTCTGAA	0.328													24	46					0	0	1	0	0	
ZBBX	79740	broad.mit.edu	37	3	167090699	167090699	+	Translation_Start_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:167090699C>A	uc003fep.2	-	4	314	c.-9G>T	c.(-11--7)AAGGT>AATGT		ZBBX_uc011bpc.1_Translation_Start_Site|ZBBX_uc003feq.2_Translation_Start_Site	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing							intracellular	zinc ion binding			ovary(2)	2						TGATTACCACCTTAATATTGT	0.294													12	51					9.31168e-06	9.63026e-06	1	1	0	
SERPINI2	5276	broad.mit.edu	37	3	167185069	167185069	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:167185069T>G	uc003fer.1	-	2	310	c.252A>C	c.(250-252)GAA>GAC	p.E84D	SERPINI2_uc003fes.1_Missense_Mutation_p.E94D|SERPINI2_uc003fet.1_Missense_Mutation_p.E84D	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	84					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						CAAAAAATTCTTCCCCTAGAA	0.323													18	28					0	0	1	0	0	
WDR49	151790	broad.mit.edu	37	3	167246875	167246875	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:167246875C>T	uc003fev.1	-	10	1621	c.1315G>A	c.(1315-1317)GAT>AAT	p.D439N	WDR49_uc003feu.1_Missense_Mutation_p.D264N|WDR49_uc011bpd.1_Missense_Mutation_p.D503N|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	439	WD 7.									large_intestine(1)|ovary(1)|skin(1)	3						CCATCAAGATCTCCTGTGGTA	0.343													13	48					0	0	1	0	0	
WDR49	151790	broad.mit.edu	37	3	167293770	167293770	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:167293770C>A	uc003fev.1	-	4	728	c.422G>T	c.(421-423)AGC>ATC	p.S141I	WDR49_uc003feu.1_5'Flank|WDR49_uc011bpd.1_Missense_Mutation_p.S194I|WDR49_uc003few.1_Missense_Mutation_p.S482I	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	141										large_intestine(1)|ovary(1)|skin(1)	3						CACCCTCTTGCTGGCTTCACT	0.408													60	102					2.89935e-36	3.58189e-36	1	1	0	
GOLIM4	27333	broad.mit.edu	37	3	167750634	167750634	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:167750634G>A	uc003ffe.2	-	9	1194	c.850C>T	c.(850-852)CGA>TGA	p.R284*	GOLIM4_uc011bpe.1_Nonsense_Mutation_p.R284*|GOLIM4_uc011bpf.1_Nonsense_Mutation_p.R256*|GOLIM4_uc011bpg.1_Nonsense_Mutation_p.R256*	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	284	Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						TCATTATTTCGAGACACCTAG	0.453													36	72					0	0	1	0	0	
MECOM	2122	broad.mit.edu	37	3	168802737	168802737	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:168802737G>A	uc003ffi.3	-	16	3385	c.3116C>T	c.(3115-3117)GCG>GTG	p.A1039V	MECOM_uc010hwk.1_3'UTR|MECOM_uc003ffj.3_Missense_Mutation_p.A1104V|MECOM_uc011bpi.1_Missense_Mutation_p.A1031V|MECOM_uc003ffn.3_Missense_Mutation_p.A1039V|MECOM_uc003ffk.2_Missense_Mutation_p.A1030V|MECOM_uc003ffl.2_Missense_Mutation_p.A1190V|MECOM_uc011bpj.1_Missense_Mutation_p.A1227V|MECOM_uc011bpk.1_Missense_Mutation_p.A1029V	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	1039					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GGATTCCGCCGCAGCCCTGGC	0.517													48	105					0	0	1	0	0	
ARPM1	84517	broad.mit.edu	37	3	169485577	169485577	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:169485577A>G	uc003ffs.1	-	2	1137	c.762T>C	c.(760-762)TGT>TGC	p.C254C	TERC_uc003ffr.1_5'Flank	NM_032487	NP_115876	Q9BYD9	ARPM1_HUMAN	actin related protein M1	254						cytoplasm|cytoskeleton					0	all_cancers(22;9.55e-22)|all_epithelial(15;2.04e-26)|all_lung(20;5.05e-16)|Lung NSC(18;2.19e-15)|Ovarian(172;0.000223)|Breast(254;0.197)		Epithelial(2;4.03e-64)|all cancers(2;5.01e-59)|Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			GGGCCTCTGGACAAGAAAAGA	0.473													41	83					0	0	1	0	0	
MYNN	55892	broad.mit.edu	37	3	169496751	169496751	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:169496751G>T	uc003fft.2	+	3	891	c.462G>T	c.(460-462)GAG>GAT	p.E154D	MYNN_uc011bpm.1_Missense_Mutation_p.E40D|MYNN_uc003ffu.2_Missense_Mutation_p.E154D|MYNN_uc003ffv.2_5'UTR|MYNN_uc010hwo.2_Missense_Mutation_p.E154D|MYNN_uc003ffw.1_RNA	NM_018657	NP_061127	Q9NPC7	MYNN_HUMAN	myoneurin	154						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1	all_cancers(22;9.55e-22)|all_epithelial(15;2.04e-26)|all_lung(20;5.05e-16)|Lung NSC(18;2.19e-15)|Ovarian(172;0.000223)|Breast(254;0.197)		Epithelial(2;4.03e-64)|all cancers(2;2.19e-58)|Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			ATAATCGAGAGAAATCAGAAG	0.353													12	46					2.80697e-09	3.01096e-09	1	1	0	
LRRC34	151827	broad.mit.edu	37	3	169513321	169513321	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:169513321G>T	uc003ffx.2	-	9	1023	c.1008C>A	c.(1006-1008)TTC>TTA	p.F336L	LRRC34_uc003ffy.2_Missense_Mutation_p.F368L|LRRC34_uc011bpn.1_3'UTR|LRRC34_uc003ffz.2_Missense_Mutation_p.F320L|LRRC34_uc003fga.3_3'UTR	NM_153353	NP_699184	Q8IZ02	LRC34_HUMAN	leucine rich repeat containing 34	336											0	all_cancers(22;4.12e-22)|all_epithelial(15;7.54e-27)|all_lung(20;1.63e-16)|Lung NSC(18;6.92e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			AGATATGAGAGAAAGTGAGAT	0.373													17	39					1.5739e-10	1.71181e-10	1	1	0	
LRRC34	151827	broad.mit.edu	37	3	169525227	169525227	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:169525227G>A	uc003ffx.2	-	4	407	c.392C>T	c.(391-393)GCG>GTG	p.A131V	LRRC34_uc003ffy.2_Missense_Mutation_p.A131V|LRRC34_uc011bpn.1_Missense_Mutation_p.A131V|LRRC34_uc003ffz.2_Missense_Mutation_p.A83V|LRRC34_uc003fga.3_Missense_Mutation_p.A83V	NM_153353	NP_699184	Q8IZ02	LRC34_HUMAN	leucine rich repeat containing 34	131											0	all_cancers(22;4.12e-22)|all_epithelial(15;7.54e-27)|all_lung(20;1.63e-16)|Lung NSC(18;6.92e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			AAGCAGTTTCGCAGCATAGTA	0.328													37	52					0	0	1	0	0	
LRRC34	151827	broad.mit.edu	37	3	169525456	169525456	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:169525456C>T	uc003ffx.2	-	3	275	c.260G>A	c.(259-261)CGC>CAC	p.R87H	LRRC34_uc003ffy.2_Missense_Mutation_p.R87H|LRRC34_uc011bpn.1_Missense_Mutation_p.R87H|LRRC34_uc003ffz.2_Missense_Mutation_p.R39H|LRRC34_uc003fga.3_Missense_Mutation_p.R39H	NM_153353	NP_699184	Q8IZ02	LRC34_HUMAN	leucine rich repeat containing 34	87											0	all_cancers(22;4.12e-22)|all_epithelial(15;7.54e-27)|all_lung(20;1.63e-16)|Lung NSC(18;6.92e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			TGGCACTAAGCGATTGTTACC	0.289													23	37					0	0	1	0	0	
LRRIQ4	344657	broad.mit.edu	37	3	169539922	169539922	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:169539922G>T	uc003fgb.2	+	1	213	c.213G>T	c.(211-213)AAG>AAT	p.K71N		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	71											0						AGCGTTTAAAGAACATCAGGG	0.502													40	91					7.04047e-22	8.37091e-22	1	1	0	
GPR160	26996	broad.mit.edu	37	3	169801785	169801785	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:169801785T>C	uc003fgi.2	+	4	615	c.25T>C	c.(25-27)TGC>CGC	p.C9R	GPR160_uc010hwq.2_Missense_Mutation_p.C9R	NM_014373	NP_055188	Q9UJ42	GP160_HUMAN	G protein-coupled receptor 160	9	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_cancers(22;3.26e-22)|all_epithelial(15;5.71e-27)|all_lung(20;8.41e-17)|Lung NSC(18;3.49e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			TTCAGAGAACTGCTCTTTTCA	0.348													29	86					0	0	1	0	0	
RPL22L1	200916	broad.mit.edu	37	3	170584266	170584266	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:170584266C>T	uc003fhc.3	-	4	361	c.272G>A	c.(271-273)CGT>CAT	p.R91H	RPL22L1_uc003fhb.3_RNA	NM_001099645	NP_001093115	Q6P5R6	RL22L_HUMAN	ribosomal protein L22-like 1	91					translation	ribosome	structural constituent of ribosome				0	all_cancers(22;1.96e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.137)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			AAGCCAATCACGAAGATTGTT	0.348													4	4					0	0	1	0	0	
TNIK	23043	broad.mit.edu	37	3	170797352	170797352	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:170797352A>G	uc003fhh.2	-	28	3748	c.3403T>C	c.(3403-3405)TGG>CGG	p.W1135R	TNIK_uc003fhi.2_Missense_Mutation_p.W1080R|TNIK_uc003fhj.2_Missense_Mutation_p.W1106R|TNIK_uc003fhk.2_Missense_Mutation_p.W1127R|TNIK_uc003fhl.2_Missense_Mutation_p.W1051R|TNIK_uc003fhm.2_Missense_Mutation_p.W1072R|TNIK_uc003fhn.2_Missense_Mutation_p.W1098R|TNIK_uc003fho.2_Missense_Mutation_p.W1043R|TNIK_uc003fhg.2_Missense_Mutation_p.W313R|TNIK_uc003fhp.2_Missense_Mutation_p.W67R	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	1135	CNH.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			ACAGTGATCCAGCCTTGTTTC	0.353													6	36					0	0	1	0	0	
TNIK	23043	broad.mit.edu	37	3	170805225	170805225	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:170805225T>C	uc003fhh.2	-	24	3137	c.2792A>G	c.(2791-2793)GAC>GGC	p.D931G	TNIK_uc003fhi.2_Missense_Mutation_p.D876G|TNIK_uc003fhj.2_Missense_Mutation_p.D902G|TNIK_uc003fhk.2_Missense_Mutation_p.D923G|TNIK_uc003fhl.2_Missense_Mutation_p.D847G|TNIK_uc003fhm.2_Missense_Mutation_p.D868G|TNIK_uc003fhn.2_Missense_Mutation_p.D894G|TNIK_uc003fho.2_Missense_Mutation_p.D839G|TNIK_uc003fhg.2_Missense_Mutation_p.D109G	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	931	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CTGCACCAGGTCAGGGAGGTT	0.587													34	89					0	0	1	0	0	
TNIK	23043	broad.mit.edu	37	3	171087468	171087468	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:171087468C>T	uc003fhh.2	-	2	409	c.64G>A	c.(64-66)GCA>ACA	p.A22T	TNIK_uc003fhi.2_Missense_Mutation_p.A22T|TNIK_uc003fhj.2_Missense_Mutation_p.A22T|TNIK_uc003fhk.2_Missense_Mutation_p.A22T|TNIK_uc003fhl.2_Missense_Mutation_p.A22T|TNIK_uc003fhm.2_Missense_Mutation_p.A22T|TNIK_uc003fhn.2_Missense_Mutation_p.A22T|TNIK_uc003fho.2_Missense_Mutation_p.A22T|TNIK_uc003fhq.2_RNA	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	22					actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			AAGATCCCTGCGGGGTCCTGA	0.338													4	5					0	0	1	0	0	
PLD1	5337	broad.mit.edu	37	3	171427395	171427395	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:171427395C>T	uc003fhs.2	-	10	1132	c.1016G>A	c.(1015-1017)CGA>CAA	p.R339Q	PLD1_uc003fht.2_Missense_Mutation_p.R339Q	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	339					cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	TGACCCAAATCGATGATCTTT	0.393													37	104					0	0	1	0	0	
PLD1	5337	broad.mit.edu	37	3	171453312	171453312	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:171453312G>A	uc003fhs.2	-	4	520	c.404C>T	c.(403-405)GCC>GTC	p.A135V	PLD1_uc003fht.2_Missense_Mutation_p.A135V	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	135	PX.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	GCGGATAAAGGCTTTGTACTT	0.333													26	79					0	0	1	0	0	
ECT2	1894	broad.mit.edu	37	3	172491704	172491704	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:172491704A>C	uc003fii.2	+	13	1485	c.1347A>C	c.(1345-1347)GTA>GTC	p.V449V	ECT2_uc010hwv.1_Silent_p.V480V|ECT2_uc003fih.2_Silent_p.V448V|ECT2_uc003fij.1_Silent_p.V449V|ECT2_uc003fik.1_Silent_p.V449V|ECT2_uc003fil.1_Silent_p.V480V	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	449	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			TATTTCAAGTACCATTGGAAG	0.363													17	46					0	0	1	0	0	
ECT2	1894	broad.mit.edu	37	3	172520655	172520655	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:172520655A>C	uc003fii.2	+	19	2036	c.1898A>C	c.(1897-1899)AAT>ACT	p.N633T	ECT2_uc010hwv.1_Missense_Mutation_p.N664T|ECT2_uc003fih.2_Missense_Mutation_p.N632T|ECT2_uc003fij.1_Missense_Mutation_p.N633T|ECT2_uc003fik.1_Missense_Mutation_p.N633T|ECT2_uc003fil.1_Missense_Mutation_p.N664T|ECT2_uc003fim.1_5'UTR	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	633					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			ATACAGGCTAATCTTTTATCT	0.353													14	49					0	0	1	0	0	
NLGN1	22871	broad.mit.edu	37	3	173996827	173996827	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:173996827G>T	uc003fio.1	+	6	1459	c.1036G>T	c.(1036-1038)GAT>TAT	p.D346Y	NLGN1_uc010hww.1_Missense_Mutation_p.D386Y|NLGN1_uc003fip.1_Missense_Mutation_p.D346Y	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	363	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			TGTTGACCAAGATATTCAACC	0.428													83	166					1.32764e-51	1.65214e-51	1	1	0	
PIK3CA	5290	broad.mit.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	A	A	rs121913284		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:178921553T>A	uc003fjk.2	+	5	1192	c.1035T>A	c.(1033-1035)AAT>AAA	p.N345K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	345					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.N345K(29)|p.N345I(2)|p.N345S(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			CCTACGTGAATGTAAATATTC	0.308		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			28	70					0	0	1	0	0	
ZNF639	51193	broad.mit.edu	37	3	179047499	179047499	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:179047499A>C	uc003fjq.1	+	4	495	c.152A>C	c.(151-153)AAA>ACA	p.K51T	ZNF639_uc003fjr.1_Missense_Mutation_p.K51T	NM_016331	NP_057415	Q9UID6	ZN639_HUMAN	zinc finger protein 639	51					initiation of viral infection|negative regulation by host of viral transcription|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of cell growth|positive regulation of transcription, DNA-dependent	nucleus	protein self-association|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0	all_cancers(143;7.9e-17)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			CCAGATTTAAAATATTTTGAC	0.299													10	145					0	0	1	0	0	
ZNF639	51193	broad.mit.edu	37	3	179051273	179051273	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:179051273A>C	uc003fjq.1	+	6	864	c.521A>C	c.(520-522)AAA>ACA	p.K174T	ZNF639_uc003fjr.1_Missense_Mutation_p.K174T	NM_016331	NP_057415	Q9UID6	ZN639_HUMAN	zinc finger protein 639	174					initiation of viral infection|negative regulation by host of viral transcription|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of cell growth|positive regulation of transcription, DNA-dependent	nucleus	protein self-association|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0	all_cancers(143;7.9e-17)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			CCGCCAGCTAAACTTTGTAAA	0.418													38	56					0	0	1	0	0	
MFN1	55669	broad.mit.edu	37	3	179066690	179066690	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:179066690G>A	uc003fjs.2	+	2	177	c.51G>A	c.(49-51)GCG>GCA	p.A17A	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Silent_p.A45A	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	17	Cytoplasmic (Potential).			A -> G (in Ref. 1; AAK06840).	mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			CTAAGAAGGCGATTACTGCAA	0.378													72	140					0	0	1	0	0	
MFN1	55669	broad.mit.edu	37	3	179082099	179082099	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:179082099T>G	uc003fjs.2	+	6	677	c.551T>G	c.(550-552)GTC>GGC	p.V184G	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Missense_Mutation_p.V212G|MFN1_uc010hxc.2_Missense_Mutation_p.V37G	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	184	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			GGCACAGATGTCACTACAGAG	0.323													17	39					0	0	1	0	0	
MFN1	55669	broad.mit.edu	37	3	179096507	179096507	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:179096507C>T	uc003fjs.2	+	14	1693	c.1567C>T	c.(1567-1569)CGT>TGT	p.R523C	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Missense_Mutation_p.P551S|MFN1_uc010hxc.2_Intron	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	523	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			TATTGTATTTCCTTTTTCCCT	0.388													24	34					0	0	1	0	0	
GNB4	59345	broad.mit.edu	37	3	179132743	179132743	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:179132743G>A	uc003fjv.3	-	6	640	c.360C>T	c.(358-360)ATC>ATT	p.I120I	GNB4_uc003fju.3_Silent_p.I31I	NM_021629	NP_067642	Q9HAV0	GBB4_HUMAN	guanine nucleotide-binding protein, beta-4	120	WD 2.				cellular response to glucagon stimulus|energy reserve metabolic process	plasma membrane	signal transducer activity			skin(2)	2	all_cancers(143;2.01e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.237)			ATATAGAGCAGATGTTGTCCA	0.473													84	166					0	0	1	0	0	
MRPL47	57129	broad.mit.edu	37	3	179306726	179306726	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:179306726C>A	uc003fjz.2	-	7	709	c.687G>T	c.(685-687)AAG>AAT	p.K229N	MRPL47_uc003fka.2_Missense_Mutation_p.K119N|MRPL47_uc003fkb.2_Missense_Mutation_p.K209N	NM_020409	NP_065142	Q9HD33	RM47_HUMAN	mitochondrial ribosomal protein L47 isoform a	229					translation	mitochondrial ribosome	structural constituent of ribosome				0	all_cancers(143;9.62e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.98e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.18)			TTTTTGCTTTCTTTCTCTCTA	0.323													38	53					2.75727e-19	3.2379e-19	1	1	0	
NDUFB5	4711	broad.mit.edu	37	3	179341795	179341795	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:179341795T>G	uc003fkc.2	+	6	566	c.537T>G	c.(535-537)ATT>ATG	p.I179M	NDUFB5_uc003fkd.2_RNA|NDUFB5_uc003fke.2_Missense_Mutation_p.I127M	NM_002492	NP_002483	O43674	NDUB5_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	179					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			skin(1)	1	all_cancers(143;9.62e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.98e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.18)		NADH(DB00157)	AGGAACTTATTGATCATTCTC	0.338													36	74					0	0	1	0	0	
CCDC39	339829	broad.mit.edu	37	3	180366038	180366038	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:180366038G>A	uc010hxe.2	-	10	1392	c.1277C>T	c.(1276-1278)ACT>ATT	p.T426I	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	426	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			AGAGGAACGAGTTCCTTCAAT	0.368													40	53					0	0	1	0	0	
ATP11B	23200	broad.mit.edu	37	3	182635851	182635851	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:182635851A>G	uc003flb.2	+	30	3750	c.3493A>G	c.(3493-3495)AGC>GGC	p.S1165G	ATP11B_uc010hxg.2_RNA	NM_014616	NP_055431	Q9Y2G3	AT11B_HUMAN	ATPase, class VI, type 11B	1165	Cytoplasmic (Potential).				aminophospholipid transport|ATP biosynthetic process	integral to membrane|nuclear inner membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;1.2e-42)|Epithelial(37;2.77e-36)|LUSC - Lung squamous cell carcinoma(7;7.58e-24)|Lung(8;4.66e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.35e-20)			CAACGACAGGAGCATCTTGAC	0.413													41	78					0	0	1	0	0	
DCUN1D1	54165	broad.mit.edu	37	3	182679035	182679035	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:182679035T>C	uc003fld.1	-	4	548	c.499A>G	c.(499-501)AAT>GAT	p.N167D	DCUN1D1_uc011bqn.1_Missense_Mutation_p.N24D	NM_020640	NP_065691	Q96GG9	DCNL1_HUMAN	RP42 homolog	167	DCUN1.					ubiquitin ligase complex	protein binding			ovary(1)	1	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;2.54e-44)|Epithelial(37;4.71e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			TGTCCTGGATTCTTTGCAAAA	0.299													99	182					0	0	1	0	0	
DCUN1D1	54165	broad.mit.edu	37	3	182681709	182681709	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:182681709A>G	uc003fld.1	-	3	398	c.349T>C	c.(349-351)TTC>CTC	p.F117L	DCUN1D1_uc011bqn.1_Intron	NM_020640	NP_065691	Q96GG9	DCNL1_HUMAN	RP42 homolog	117	DCUN1.					ubiquitin ligase complex	protein binding			ovary(1)	1	all_cancers(143;9.04e-15)|Ovarian(172;0.0355)		all cancers(12;2.54e-44)|Epithelial(37;4.71e-38)|LUSC - Lung squamous cell carcinoma(7;5.04e-25)|Lung(8;5.03e-23)|OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			TGTTTGGAGAACTCGCACTGT	0.423													27	71					0	0	1	0	0	
MCF2L2	23101	broad.mit.edu	37	3	182946141	182946141	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:182946141C>A	uc003fli.1	-	18	2149	c.2059G>T	c.(2059-2061)GAG>TAG	p.E687*	MCF2L2_uc003flj.1_Nonsense_Mutation_p.E687*	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	687	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			TTTTCCAACTCTTTTAGAAAA	0.323													23	46					2.48779e-11	2.72679e-11	1	1	0	
B3GNT5	84002	broad.mit.edu	37	3	182988416	182988416	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:182988416C>A	uc003flk.2	+	2	1360	c.830C>A	c.(829-831)TCA>TAA	p.S277*	MCF2L2_uc003fli.1_Intron|MCF2L2_uc003flj.1_Intron|MCF2L2_uc011bqr.1_Intron|B3GNT5_uc003fll.2_Nonsense_Mutation_p.S277*|B3GNT5_uc003flm.2_Nonsense_Mutation_p.S277*	NM_032047	NP_114436	Q9BYG0	B3GN5_HUMAN	UDP-GlcNAc:betaGal	277	Lumenal (Potential).				central nervous system development|glycolipid biosynthetic process|protein glycosylation	Golgi membrane|integral to membrane	beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity|galactosyltransferase activity			ovary(1)	1	all_cancers(143;8.52e-13)|Ovarian(172;0.0355)		all cancers(12;4.52e-44)|Epithelial(37;8.82e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			ACACTAAATTCAAGTCTTTAC	0.468													28	64					9.80776e-20	1.15405e-19	1	1	0	
KLHL6	89857	broad.mit.edu	37	3	183273245	183273245	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:183273245C>T	uc003flr.2	-	1	255	c.197G>A	c.(196-198)CGA>CAA	p.R66Q	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Missense_Mutation_p.R64Q	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	66										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GTTTTCCATTCGCAGGGTTTC	0.493													69	123					0	0	1	0	0	
YEATS2	55689	broad.mit.edu	37	3	183528314	183528314	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:183528314T>C	uc003fly.2	+	31	4407	c.4212T>C	c.(4210-4212)ATT>ATC	p.I1404I		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	1404					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TTTGCAACATTCCTTTTCTGG	0.448													15	41					0	0	1	0	0	
EIF2B5	8893	broad.mit.edu	37	3	183854515	183854515	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:183854515A>C	uc003fmp.2	+	2	675	c.311A>C	c.(310-312)GAA>GCA	p.E104A	EIF2B5_uc010hxs.2_Missense_Mutation_p.E104A|EIF2B5_uc003fmq.2_5'UTR	NM_003907	NP_003898	Q13144	EI2BE_HUMAN	eukaryotic translation initiation factor 2B,	104					astrocyte development|myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|positive regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus|RNA metabolic process	cytosol|eukaryotic translation initiation factor 2B complex|nucleus	guanyl-nucleotide exchange factor activity|transferase activity|translation initiation factor activity|translation initiation factor binding			ovary(5)	5	all_cancers(143;7.59e-11)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CAAATCAAAGAACATTTACTG	0.413													78	183					0	0	1	0	0	
EIF2B5	8893	broad.mit.edu	37	3	183856022	183856022	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:183856022C>A	uc003fmp.2	+	5	1117	c.753C>A	c.(751-753)ATC>ATA	p.I251I	EIF2B5_uc003fmq.2_Translation_Start_Site	NM_003907	NP_003898	Q13144	EI2BE_HUMAN	eukaryotic translation initiation factor 2B,	251					astrocyte development|myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|positive regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus|RNA metabolic process	cytosol|eukaryotic translation initiation factor 2B complex|nucleus	guanyl-nucleotide exchange factor activity|transferase activity|translation initiation factor activity|translation initiation factor binding			ovary(5)	5	all_cancers(143;7.59e-11)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			ATATCAGCATCTGTTCTCCTC	0.473													26	48					5.45727e-16	6.24559e-16	1	1	0	
DVL3	1857	broad.mit.edu	37	3	183884050	183884050	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:183884050A>G	uc003fms.2	+	8	1040	c.900A>G	c.(898-900)TTA>TTG	p.L300L	DVL3_uc011bqw.1_Silent_p.L300L|DVL3_uc003fmt.2_5'UTR|DVL3_uc003fmu.2_Silent_p.L132L	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	300	PDZ.				canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			ATATGTTGTTACAGGTATCAG	0.577													34	76					0	0	1	0	0	
EIF4G1	1981	broad.mit.edu	37	3	184041688	184041688	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:184041688G>T	uc003fnp.2	+	16	2593	c.2395G>T	c.(2395-2397)GAC>TAC	p.D799Y	EIF4G1_uc003fno.1_Missense_Mutation_p.D740Y|EIF4G1_uc010hxw.1_Missense_Mutation_p.D635Y|EIF4G1_uc003fnt.2_Missense_Mutation_p.D510Y|EIF4G1_uc003fnq.2_Missense_Mutation_p.D712Y|EIF4G1_uc003fnr.2_Missense_Mutation_p.D635Y|EIF4G1_uc010hxx.2_Missense_Mutation_p.D806Y|EIF4G1_uc003fns.2_Missense_Mutation_p.D759Y|EIF4G1_uc010hxy.2_Missense_Mutation_p.D806Y|EIF4G1_uc003fnv.3_Missense_Mutation_p.D800Y|EIF4G1_uc003fnu.3_Missense_Mutation_p.D799Y|EIF4G1_uc003fnw.2_Missense_Mutation_p.D806Y|EIF4G1_uc003fnx.2_Missense_Mutation_p.D604Y|EIF4G1_uc003fny.3_Missense_Mutation_p.D603Y|SNORD66_uc003fnz.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	799	eIF3/EIF4A-binding.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGGGGTCATTGACCTCATTTT	0.522													42	75					3.68427e-32	4.51887e-32	1	1	0	
THPO	7066	broad.mit.edu	37	3	184090679	184090679	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:184090679C>A	uc003fol.1	-	6	899	c.684G>T	c.(682-684)AAG>AAT	p.K228N	THPO_uc003fom.1_Missense_Mutation_p.K224N|THPO_uc003fon.2_Missense_Mutation_p.D190Y|THPO_uc011bro.1_Missense_Mutation_p.D186Y|THPO_uc003fop.2_Missense_Mutation_p.D186Y|THPO_uc011brp.1_Intron|THPO_uc011brq.1_Intron|THPO_uc003for.1_RNA|THPO_uc003fos.1_RNA	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	228					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GACCAGGAATCTTGGCTCTGA	0.517													18	49					2.48551e-13	2.7759e-13	1	1	0	
CHRD	8646	broad.mit.edu	37	3	184102385	184102385	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:184102385C>T	uc003fov.2	+	13	1747	c.1501C>T	c.(1501-1503)CTC>TTC	p.L501F	CHRD_uc003fow.2_Missense_Mutation_p.L131F|CHRD_uc003fox.2_Missense_Mutation_p.L501F|CHRD_uc003foy.2_Missense_Mutation_p.L131F|CHRD_uc010hyc.2_Missense_Mutation_p.L91F|CHRD_uc011brr.1_Missense_Mutation_p.L131F	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	501	CHRD 3.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCAGAATGAGCTCTTCCTGAA	0.647													60	76					0	0	1	0	0	
EPHB3	2049	broad.mit.edu	37	3	184298943	184298943	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:184298943G>A	uc003foz.2	+	14	3159	c.2722G>A	c.(2722-2724)GCT>ACT	p.A908T		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	908	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			CATTGCCAGCGCTCAGTCTGG	0.572													37	65					0	0	1	0	0	
EHHADH	1962	broad.mit.edu	37	3	184953175	184953175	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:184953175C>A	uc003fpf.2	-	3	281	c.254G>T	c.(253-255)AGA>ATA	p.R85I	EHHADH_uc011brs.1_5'UTR	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	85	Enoyl-CoA hydratase / isomerase.					peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	CTTCTCATTTCTCTGTATTTC	0.517													27	29					2.79863e-10	3.03339e-10	1	1	0	
MAP3K13	9175	broad.mit.edu	37	3	185161334	185161334	+	Missense_Mutation	SNP	G	A	A	rs141609876		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:185161334G>A	uc010hyf.2	+	5	1027	c.761G>A	c.(760-762)CGA>CAA	p.R254Q	MAP3K13_uc011brt.1_Missense_Mutation_p.R47Q|MAP3K13_uc003fph.3_Missense_Mutation_p.R22Q|MAP3K13_uc011bru.1_Missense_Mutation_p.R110Q|MAP3K13_uc003fpi.2_Missense_Mutation_p.R254Q|MAP3K13_uc010hyg.2_Intron	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	254	Protein kinase.				activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			ATCACACCTCGATTGCTAGTA	0.433													50	93					0	0	1	0	0	
IGF2BP2	10644	broad.mit.edu	37	3	185416116	185416116	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:185416116G>A	uc003fpo.2	-	3	338	c.259C>T	c.(259-261)CGA>TGA	p.R87*	IGF2BP2_uc010hyi.2_Nonsense_Mutation_p.R24*|IGF2BP2_uc010hyj.2_Nonsense_Mutation_p.R24*|IGF2BP2_uc010hyk.2_5'UTR|IGF2BP2_uc010hyl.2_Nonsense_Mutation_p.R24*|IGF2BP2_uc003fpp.2_Nonsense_Mutation_p.R87*|IGF2BP2_uc003fpq.2_Nonsense_Mutation_p.R86*	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	87	RRM 2.				anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			GGGATGTTTCGAATCTGAATT	0.398													12	40					0	0	1	0	0	
ETV5	2119	broad.mit.edu	37	3	185797681	185797681	+	Missense_Mutation	SNP	G	A	A	rs141531791		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:185797681G>A	uc003fpz.2	-	7	822	c.575C>T	c.(574-576)GCG>GTG	p.A192V	ETV5_uc003fpy.2_Missense_Mutation_p.A234V	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	192					cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			TCGGGGGACCGCAAATGTTTG	0.607			T	TMPRSS2|SCL45A3	Prostate 								41	80					0	0	1	0	0	
CRYGS	1427	broad.mit.edu	37	3	186257252	186257252	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:186257252C>T	uc003fqe.2	-	2	208	c.156G>A	c.(154-156)AGG>AGA	p.R52R	CRYGS_uc003fqf.2_Silent_p.R52R	NM_017541	NP_060011	P22914	CRBS_HUMAN	crystallin, gamma S	52	Beta/gamma crystallin 'Greek key' 2.			R -> T (in Ref. 2; AA sequence).			structural constituent of eye lens				0	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.5e-22)	GBM - Glioblastoma multiforme(93;0.0906)		CAAAGTTGGGCCTTTCATAAA	0.522													29	46					0	0	1	0	0	
KNG1	3827	broad.mit.edu	37	3	186445091	186445091	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:186445091T>G	uc011bsa.1	+	5	842	c.630T>G	c.(628-630)AAT>AAG	p.N210K	KNG1_uc003fqr.2_Missense_Mutation_p.N210K	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	210	Cystatin 2.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	CCAAAGAGAATTTTCTGTTCT	0.348													37	73					0	0	1	0	0	
KNG1	3827	broad.mit.edu	37	3	186459654	186459654	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:186459654T>C	uc011bsa.1	+	10	1681	c.1469T>C	c.(1468-1470)GTC>GCC	p.V490A	KNG1_uc003fqr.2_Intron	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	490	|His-rich.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	GGGGGCCATGTCCTTGACCAT	0.443													19	30					0	0	1	0	0	
RTP4	64108	broad.mit.edu	37	3	187088673	187088673	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:187088673C>T	uc003frm.2	+	2	315	c.253C>T	c.(253-255)CGT>TGT	p.R85C		NM_022147	NP_071430	Q96DX8	RTP4_HUMAN	28kD interferon responsive protein	85	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding				0	all_cancers(143;4.66e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		GGGTCAGGTGCGTATGAGGCT	0.567													8	36					0	0	1	0	0	
RTP4	64108	broad.mit.edu	37	3	187088944	187088944	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:187088944A>C	uc003frm.2	+	2	586	c.524A>C	c.(523-525)AAA>ACA	p.K175T		NM_022147	NP_071430	Q96DX8	RTP4_HUMAN	28kD interferon responsive protein	175	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding				0	all_cancers(143;4.66e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		AAGCCGTCCAAATCCCTACTC	0.517													9	48					0	0	1	0	0	
RTP2	344892	broad.mit.edu	37	3	187416459	187416459	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:187416459C>T	uc003fro.1	-	2	934	c.505G>A	c.(505-507)GAG>AAG	p.E169K		NM_001004312	NP_001004312	Q5QGT7	RTP2_HUMAN	receptor transporting protein 2	169	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding				0	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0515)		AGCAGCTTCTCGCTGGGCTTC	0.647													22	50					0	0	1	0	0	
TP63	8626	broad.mit.edu	37	3	189349237	189349237	+	Translation_Start_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:189349237A>G	uc003fry.2	+	1	22	c.-67A>G	c.(-69--65)ATACA>ATGCA		TP63_uc003frx.2_Translation_Start_Site|TP63_uc003frz.2_Translation_Start_Site|TP63_uc010hzc.1_Translation_Start_Site	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1						anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ATCTATATATACACAGGTATA	0.358									Hay-Wells_syndrome	HNSCC(45;0.13)			20	40					0	0	1	0	0	
TP63	8626	broad.mit.edu	37	3	189526302	189526302	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:189526302C>T	uc003fry.2	+	4	655	c.566C>T	c.(565-567)TCG>TTG	p.S189L	TP63_uc003frx.2_Missense_Mutation_p.S189L|TP63_uc003frz.2_Missense_Mutation_p.S189L|TP63_uc010hzc.1_Missense_Mutation_p.S189L|TP63_uc003fsa.2_Missense_Mutation_p.S95L|TP63_uc003fsb.2_Missense_Mutation_p.S95L|TP63_uc003fsc.2_Missense_Mutation_p.S95L|TP63_uc003fsd.2_Missense_Mutation_p.S95L|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Missense_Mutation_p.S70L	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	189					anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACCGCCAAGTCGGCCACCTGG	0.622									Hay-Wells_syndrome	HNSCC(45;0.13)			42	53					0	0	1	0	0	
LEPREL1	55214	broad.mit.edu	37	3	189691761	189691761	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:189691761T>C	uc011bsk.1	-	10	1873	c.1485A>G	c.(1483-1485)GGA>GGG	p.G495G	LEPREL1_uc003fsg.2_Silent_p.G314G	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	495					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GTGAAGTTTTTCCTCTGTATC	0.323													28	221					0	0	1	0	0	
LEPREL1	55214	broad.mit.edu	37	3	189700850	189700850	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:189700850G>A	uc011bsk.1	-	8	1697	c.1309C>T	c.(1309-1311)CGA>TGA	p.R437*	LEPREL1_uc003fsg.2_Nonsense_Mutation_p.R256*	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	437					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTTAGGTCTCGATCTATCTTG	0.448													46	91					0	0	1	0	0	
LEPREL1	55214	broad.mit.edu	37	3	189702354	189702354	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:189702354C>T	uc011bsk.1	-	7	1602	c.1214G>A	c.(1213-1215)CGA>CAA	p.R405Q	LEPREL1_uc003fsg.2_Missense_Mutation_p.R224Q	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	405					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTCATCCTGTCGTCCTCCATA	0.318													33	96					0	0	1	0	0	
LEPREL1	55214	broad.mit.edu	37	3	189838069	189838069	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:189838069T>G	uc011bsk.1	-	1	840	c.452A>C	c.(451-453)TAC>TCC	p.Y151S	LEPREL1_uc003fsg.2_Intron	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	151	TPR 2.				collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CAGGTAGTTGTAGGGCACTCT	0.662													6	10					0	0	1	0	0	
IL1RAP	3556	broad.mit.edu	37	3	190326850	190326850	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:190326850T>C	uc003fsm.1	+	5	623	c.417T>C	c.(415-417)AAT>AAC	p.N139N	IL1RAP_uc003fsk.2_Silent_p.N139N|IL1RAP_uc003fsl.2_Silent_p.N139N|IL1RAP_uc010hzf.2_5'UTR|IL1RAP_uc010hzg.1_Silent_p.N139N|IL1RAP_uc003fsn.1_RNA|IL1RAP_uc003fso.1_Silent_p.N139N|IL1RAP_uc003fsp.1_RNA|IL1RAP_uc003fsq.2_Silent_p.N139N	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	139	Extracellular (Potential).				inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		GCTGTTTCAATTCCCCCATGA	0.368													41	94					0	0	1	0	0	
UTS2D	257313	broad.mit.edu	37	3	190993102	190993102	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:190993102C>T	uc003fsu.2	-	8	1060	c.273G>A	c.(271-273)GAG>GAA	p.E91E		NM_198152	NP_937795	Q765I0	UTS2B_HUMAN	urotensin 2 domain containing precursor	91						extracellular region	hormone activity				0	all_cancers(143;1.77e-09)|Ovarian(172;0.103)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000214)		CAGAATCCTTCTCCTCCACTA	0.333													60	110					0	0	1	0	0	
C3orf59	151963	broad.mit.edu	37	3	192517304	192517304	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:192517304A>G	uc011bsp.1	-	2	668	c.347T>C	c.(346-348)ATG>ACG	p.M116T		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	116											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		GGTAAAGTCCATATCATAGTC	0.542													23	52					0	0	1	0	0	
ATP13A4	84239	broad.mit.edu	37	3	193182749	193182749	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:193182749T>G	uc003ftd.2	-	12	1549	c.1441A>C	c.(1441-1443)AAC>CAC	p.N481H	ATP13A4_uc003fte.1_Missense_Mutation_p.N481H|ATP13A4_uc011bsr.1_5'UTR|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Missense_Mutation_p.N187H	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	481	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CAGACAAGGTTTAACTGTCCA	0.433													44	93					0	0	1	0	0	
ATP13A4	84239	broad.mit.edu	37	3	193232644	193232644	+	Missense_Mutation	SNP	C	A	A	rs141456857		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:193232644C>A	uc003ftd.2	-	2	185	c.77G>T	c.(76-78)CGG>CTG	p.R26L	ATP13A4_uc003fte.1_Missense_Mutation_p.R26L|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	26	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GCCTTGAGTCCGATAGCCAAA	0.418													17	46					0.000422831	0.000430665	1	1	0	
LOC100128023	100128023	broad.mit.edu	37	3	193711103	193711103	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:193711103G>T	uc011bss.1	-	1		c.925C>A				NR_027764				Homo sapiens developmental pluripotency associated 2 pseudogene (LOC100128023), non-coding RNA.												0						TGTATTCAAAGAGGTTGCTGC	0.383													3	7					0.00909568	0.00917068	1	1	0	
ATP13A3	79572	broad.mit.edu	37	3	194140694	194140694	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:194140694A>C	uc003fty.3	-	30	3718	c.3316T>G	c.(3316-3318)TTT>GTT	p.F1106V	ATP13A3_uc003ftx.3_Translation_Start_Site	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	1106	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		AAAACAAAAAAATCTGGAAAA	0.294													12	13					0	0	1	0	0	
ATP13A3	79572	broad.mit.edu	37	3	194169269	194169269	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:194169269C>T	uc003fty.3	-	11	1469	c.1067G>A	c.(1066-1068)CGA>CAA	p.R356Q	ATP13A3_uc003ftz.1_Missense_Mutation_p.R62Q	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	356					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		CAAAGTATGTCGTTTATGTGT	0.368													28	50					0	0	1	0	0	
TMEM44	93109	broad.mit.edu	37	3	194349195	194349195	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:194349195A>C	uc010hzn.2	-	2	350	c.181T>G	c.(181-183)TCG>GCG	p.S61A	TMEM44_uc003fue.2_Missense_Mutation_p.S61A|TMEM44_uc003fud.2_Missense_Mutation_p.S61A|TMEM44_uc003fuf.2_Missense_Mutation_p.S61A|TMEM44_uc011bsv.1_Missense_Mutation_p.S61A|TMEM44_uc003fuh.1_RNA	NM_001011655	NP_001011655	Q2T9K0	TMM44_HUMAN	transmembrane protein 44 isoform b	61	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;9.06e-06)		CACAGTGCCGACTGGTCCTGT	0.577													8	15					0	0	1	0	0	
TNK2	10188	broad.mit.edu	37	3	195613863	195613863	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:195613863C>A	uc003fvu.1	-	3	762	c.219G>T	c.(217-219)AAG>AAT	p.K73N	TNK2_uc003fvs.1_Missense_Mutation_p.K105N|TNK2_uc003fvt.1_Missense_Mutation_p.K136N|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_5'Flank|TNK2_uc010hzx.1_Missense_Mutation_p.K87N	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	73	SAM-like domain.				positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	TCATCCACGACTTGCGTTTGC	0.567													28	86					8.16721e-17	9.41672e-17	1	1	0	
TFRC	7037	broad.mit.edu	37	3	195787075	195787075	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:195787075C>T	uc003fvz.3	-	14	1795	c.1512G>A	c.(1510-1512)ACG>ACA	p.T504T	TFRC_uc003fwa.3_Silent_p.T504T|TFRC_uc010hzy.2_Silent_p.T423T|TFRC_uc011btr.1_Silent_p.T222T	NM_003234	NP_003225	P02786	TFR1_HUMAN	transferrin receptor	504	Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|interspecies interaction between organisms|proteolysis|transferrin transport|transmembrane transport	coated pit|endosome|integral to plasma membrane|melanosome	peptidase activity|transferrin receptor activity			ovary(3)	3	all_cancers(143;1.94e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.36e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.17e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00233)		TCTCAATAAGCGTATACAACA	0.343			T	BCL6	NHL								12	22					0	0	1	0	0	
OSTalpha	200931	broad.mit.edu	37	3	195955063	195955063	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:195955063C>T	uc003fwd.2	+	5	641	c.440C>T	c.(439-441)ACG>ATG	p.T147M	OSTalpha_uc010iac.1_Missense_Mutation_p.T31M|OSTalpha_uc003fwe.2_Missense_Mutation_p.T14M	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha	147						integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		GTGCTGAGGACGCTGAGGGAC	0.502													58	133					0	0	1	0	0	
RNF168	165918	broad.mit.edu	37	3	196214416	196214416	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:196214416C>A	uc003fwq.2	-	3	950	c.412G>T	c.(412-414)GAA>TAA	p.E138*	RNF168_uc010iah.2_5'UTR	NM_152617	NP_689830	Q8IYW5	RN168_HUMAN	ring finger protein 168	138	Glu-rich.				double-strand break repair|histone H2A K63-linked ubiquitination|positive regulation of DNA repair|response to ionizing radiation	nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(143;1e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;5.25e-24)|all cancers(36;5.47e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00348)		GCTTTGTTTTCTTCTTCCTCG	0.433													53	99					6.08268e-21	7.19453e-21	1	1	0	
WDR53	348793	broad.mit.edu	37	3	196287914	196287914	+	Missense_Mutation	SNP	G	A	A	rs139966326		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:196287914G>A	uc003fwt.2	-	3	904	c.433C>T	c.(433-435)CGG>TGG	p.R145W		NM_182627	NP_872433	Q7Z5U6	WDR53_HUMAN	WD repeat domain 53	145	WD 3.									breast(1)|skin(1)	2	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.6e-23)|all cancers(36;1.54e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.29e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		CTCTGAGGCCGAAAAGCCACT	0.463													36	110					0	0	1	0	0	
WDR53	348793	broad.mit.edu	37	3	196288018	196288018	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:196288018G>A	uc003fwt.2	-	3	800	c.329C>T	c.(328-330)GCT>GTT	p.A110V		NM_182627	NP_872433	Q7Z5U6	WDR53_HUMAN	WD repeat domain 53	110	WD 2.									breast(1)|skin(1)	2	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.6e-23)|all cancers(36;1.54e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.29e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		GTCAGCAGAAGCCAGCAGGTT	0.418													42	132					0	0	1	0	0	
FBXO45	200933	broad.mit.edu	37	3	196311019	196311019	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:196311019C>T	uc010iai.2	+	3	822	c.691C>T	c.(691-693)CGA>TGA	p.R231*		NM_001105573	NP_001099043	P0C2W1	FBSP1_HUMAN	F-box protein 45	231	B30.2/SPRY.				nervous system development|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	cell junction|postsynaptic membrane|presynaptic membrane	protein binding			skin(1)	1	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;2.75e-23)|all cancers(36;2.47e-21)|OV - Ovarian serous cystadenocarcinoma(49;2.32e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00314)		AGAAAGAATTCGAGTCATCTT	0.393													25	48					0	0	1	0	0	
PIGX	54965	broad.mit.edu	37	3	196457961	196457961	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:196457961T>G	uc010iaj.2	+	6	843	c.562T>G	c.(562-564)TCA>GCA	p.S188A	PIGX_uc003fwx.3_Missense_Mutation_p.S170A|PIGX_uc011btx.1_RNA	NM_017861	NP_060331	Q8TBF5	PIGX_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	211	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;1.08e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00322)		GAAGTATAAATCAGTAAGCTA	0.373													15	32					0	0	1	0	0	
DLG1	1739	broad.mit.edu	37	3	196812540	196812540	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:196812540A>C	uc003fxo.3	-	17	2038	c.1848T>G	c.(1846-1848)ATT>ATG	p.I616M	DLG1_uc011bub.1_Missense_Mutation_p.I500M|DLG1_uc011buc.1_Missense_Mutation_p.I500M|DLG1_uc011bud.1_Missense_Mutation_p.I299M|DLG1_uc003fxn.3_Missense_Mutation_p.I616M|DLG1_uc011bue.1_Missense_Mutation_p.I583M|DLG1_uc010ial.2_Missense_Mutation_p.I616M|DLG1_uc011buf.1_RNA|DLG1_uc003fxp.2_RNA|DLG1_uc010iam.1_Missense_Mutation_p.I583M	NM_001098424	NP_001091894	Q12959	DLG1_HUMAN	discs, large homolog 1 isoform 1	616	SH3.				actin filament organization|axon guidance|cell-cell adhesion|cortical actin cytoskeleton organization|endothelial cell proliferation|establishment or maintenance of cell polarity|interspecies interaction between organisms|mitotic cell cycle G1/S transition checkpoint|negative regulation of mitotic cell cycle|protein localization in plasma membrane|synaptic transmission|tight junction assembly	basolateral plasma membrane|cytosol|endoplasmic reticulum membrane|immunological synapse|MPP7-DLG1-LIN7 complex|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|tight junction	cytoskeletal protein binding|guanylate kinase activity|L27 domain binding|phosphatase binding|phosphoprotein phosphatase activity|potassium channel regulator activity|protein binding|protein C-terminus binding|protein kinase binding			ovary(3)	3	all_cancers(143;6.22e-10)|Ovarian(172;0.0418)|Breast(254;0.0589)	Lung NSC(153;0.133)	Epithelial(36;3.23e-24)|all cancers(36;2.15e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0148)		CAGAAGCATTAATAACATGGA	0.463													45	93					0	0	1	0	0	
DLG1	1739	broad.mit.edu	37	3	196888575	196888575	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr3:196888575A>G	uc003fxo.3	-	6	708	c.518T>C	c.(517-519)GTC>GCC	p.V173A	DLG1_uc011bub.1_Intron|DLG1_uc011buc.1_Intron|DLG1_uc011bud.1_Intron|DLG1_uc003fxn.3_Missense_Mutation_p.V173A|DLG1_uc011bue.1_Intron|DLG1_uc010ial.2_Missense_Mutation_p.V173A|DLG1_uc011buf.1_Intron|DLG1_uc003fxp.2_RNA|DLG1_uc010iam.1_Intron|DLG1_uc010ian.2_Intron	NM_001098424	NP_001091894	Q12959	DLG1_HUMAN	discs, large homolog 1 isoform 1	173	Interaction with SH3 domains.				actin filament organization|axon guidance|cell-cell adhesion|cortical actin cytoskeleton organization|endothelial cell proliferation|establishment or maintenance of cell polarity|interspecies interaction between organisms|mitotic cell cycle G1/S transition checkpoint|negative regulation of mitotic cell cycle|protein localization in plasma membrane|synaptic transmission|tight junction assembly	basolateral plasma membrane|cytosol|endoplasmic reticulum membrane|immunological synapse|MPP7-DLG1-LIN7 complex|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|tight junction	cytoskeletal protein binding|guanylate kinase activity|L27 domain binding|phosphatase binding|phosphoprotein phosphatase activity|potassium channel regulator activity|protein binding|protein C-terminus binding|protein kinase binding			ovary(3)	3	all_cancers(143;6.22e-10)|Ovarian(172;0.0418)|Breast(254;0.0589)	Lung NSC(153;0.133)	Epithelial(36;3.23e-24)|all cancers(36;2.15e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0148)		GATCACAGGGACAGTGGGAGG	0.383													7	16					0	0	1	0	0	
ZNF718	255403	broad.mit.edu	37	4	155467	155467	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:155467G>A	uc003fzt.3	+	8	1125	c.992G>A	c.(991-993)AGA>AAA	p.R331K	ZNF595_uc003fzu.1_Intron|ZNF718_uc010iaz.2_RNA|ZNF718_uc003fzw.3_Missense_Mutation_p.E111K	NM_001039127	NP_001034216	Q3SXZ3	ZN718_HUMAN	zinc finger protein 718	331	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0681)|Epithelial(2;0.0838)|all cancers(2;0.135)|LUSC - Lung squamous cell carcinoma(95;0.18)		AAACATAAGAGAATTCATACA	0.388													8	11					0	0	1	0	0	
ZNF876P	642280	broad.mit.edu	37	4	247977	247977	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:247977T>C	uc010iba.2	+	2		c.811T>C				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						CCTACAAATGTGAAGAATGTG	0.403													7	28					0	0	1	0	0	
ZNF876P	642280	broad.mit.edu	37	4	248195	248195	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:248195G>T	uc010iba.2	+	2		c.1029G>T				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						ATAAACAAGAGAATTCATACT	0.373													20	37					1.56452e-12	1.73502e-12	1	1	0	
ZNF876P	642280	broad.mit.edu	37	4	248322	248322	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:248322C>T	uc010iba.2	+	2		c.1156C>T				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						AAGAATGTGGCAACGCCTTTT	0.378													5	23					0	0	1	0	0	
ZNF732	654254	broad.mit.edu	37	4	266034	266034	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:266034A>T	uc011buu.1	-	3	623	c.609T>A	c.(607-609)TTT>TTA	p.F203L	ZNF732_uc010ibb.1_Intron	NM_001137608	NP_001131080	B4DXR9	ZN732_HUMAN	zinc finger protein 732	204	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATACCATTTAAAGTCTTTGC	0.368													10	13					0	0	1	0	0	
ZNF732	654254	broad.mit.edu	37	4	289920	289920	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:289920C>T	uc011buu.1	-	1	39	c.25G>A	c.(25-27)GCC>ACC	p.A9T	ZNF732_uc010ibb.1_Intron	NM_001137608	NP_001131080	B4DXR9	ZN732_HUMAN	zinc finger protein 732	10	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATTCTATGGCCACATCCCTG	0.408													29	54					0	0	1	0	0	
ZNF721	170960	broad.mit.edu	37	4	435862	435862	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:435862T>G	uc003gag.2	-	3	3085	c.2394A>C	c.(2392-2394)AAA>AAC	p.K798N	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.K830N|ZNF721_uc010ibe.2_Missense_Mutation_p.K786N	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	798						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCCTCTTATGTTTAGCAAAGC	0.368													26	56					0	0	1	0	0	
ZNF721	170960	broad.mit.edu	37	4	437198	437198	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:437198C>A	uc003gag.2	-	3	1749	c.1058G>T	c.(1057-1059)AGA>ATA	p.R353I	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.R385I|ZNF721_uc010ibe.2_Missense_Mutation_p.R341I	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	353						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AGTATGAATTCTCCTATGTAC	0.423													23	64					1.64293e-13	1.8379e-13	1	1	0	
ZNF721	170960	broad.mit.edu	37	4	437786	437786	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:437786T>G	uc003gag.2	-	3	1161	c.470A>C	c.(469-471)AAA>ACA	p.K157T	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.K189T|ZNF721_uc010ibe.2_Missense_Mutation_p.K145T	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	157						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AGTATGAATTTTCTTGTGTTG	0.393													49	103					0	0	1	0	0	
ZNF721	170960	broad.mit.edu	37	4	466372	466372	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:466372A>G	uc003gag.2	-	2	717	c.26T>C	c.(25-27)GTC>GCC	p.V9A	ABCA11P_uc003gac.2_5'UTR|ABCA11P_uc003gad.2_RNA|ABCA11P_uc011buv.1_Missense_Mutation_p.V41A|ABCA11P_uc003gae.2_5'UTR|ABCA11P_uc010ibd.1_5'UTR|ZNF721_uc003gaf.3_Missense_Mutation_p.V41A|ZNF721_uc010ibe.2_Intron	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	9						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						ACCTAGGGAGACCAGGTTTCT	0.378													32	64					0	0	1	0	0	
PIGG	54872	broad.mit.edu	37	4	499698	499698	+	Silent	SNP	C	T	T	rs146375356		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:499698C>T	uc003gak.3	+	3	688	c.552C>T	c.(550-552)TTC>TTT	p.F184F	PIGG_uc003gaj.3_Silent_p.F184F|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Intron|PIGG_uc003gal.3_Silent_p.F95F|PIGG_uc003gai.2_RNA|PIGG_uc011buw.1_Silent_p.F62F|PIGG_uc003gam.2_Silent_p.F95F|PIGG_uc003gan.2_Silent_p.F95F	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	184	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity	p.F184F(1)		central_nervous_system(2)|ovary(1)|skin(1)	4						CCTCATTTTTCGTGTCAGATT	0.338													18	36					0	0	1	0	0	
GAK	2580	broad.mit.edu	37	4	891937	891937	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:891937A>C	uc003gbm.3	-	6	734	c.535T>G	c.(535-537)TTG>GTG	p.L179V	GAK_uc003gbn.3_Missense_Mutation_p.L100V|GAK_uc010ibk.1_Missense_Mutation_p.L73V|GAK_uc003gbl.3_Missense_Mutation_p.L43V	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	179	Protein kinase.				cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		CTAAGCAACAAGTTCTCAACC	0.542													20	29					0	0	1	0	0	
SPON2	10417	broad.mit.edu	37	4	1164274	1164274	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:1164274G>A	uc003gcn.3	-	4	754	c.727C>T	c.(727-729)CGG>TGG	p.R243W	SPON2_uc003gco.3_Missense_Mutation_p.R243W|SPON2_uc010ibr.2_Missense_Mutation_p.R243W|SPON2_uc003gcm.1_3'UTR	NM_012445	NP_036577	Q9BUD6	SPON2_HUMAN	spondin 2, extracellular matrix protein	243					axon guidance|cell adhesion|innate immune response	proteinaceous extracellular matrix	metal ion binding			central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00805)	UCEC - Uterine corpus endometrioid carcinoma (64;0.139)|Colorectal(103;0.19)		TGTCGCAGCCGCACCAGTGTC	0.642													41	74					0	0	1	0	0	
CRIPAK	285464	broad.mit.edu	37	4	1389618	1389618	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:1389618C>A	uc003gdf.2	+	1	4279	c.1319C>A	c.(1318-1320)TCT>TAT	p.S440Y		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	440	Interaction with PAK1.				ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			TTTTATATTTCTCTGCACCTC	0.428													29	54					3.65163e-15	4.15301e-15	1	1	0	
FGFR3	2261	broad.mit.edu	37	4	1805474	1805474	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:1805474T>C	uc003gdr.3	+	8	1242	c.986T>C	c.(985-987)GTC>GCC	p.V329A	FGFR3_uc003gdu.2_Intron|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Missense_Mutation_p.V329A|FGFR3_uc010icb.1_Missense_Mutation_p.V137A|FGFR3_uc003gdt.1_Missense_Mutation_p.V158A	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	329	Ig-like C2-type 3.|Extracellular (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding			urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	TTGCACAACGTCACCTTTGAG	0.602		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				17	34					0	0	1	0	0	
WHSC1	7468	broad.mit.edu	37	4	1902902	1902902	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:1902902A>C	uc003gdz.3	+	2	697	c.521A>C	c.(520-522)AAA>ACA	p.K174T	WHSC1_uc003geb.3_Missense_Mutation_p.K174T|WHSC1_uc003gec.3_Missense_Mutation_p.K174T|WHSC1_uc003ged.3_Missense_Mutation_p.K174T|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gdx.2_Missense_Mutation_p.K174T|WHSC1_uc003gdy.1_Missense_Mutation_p.K174T|WHSC1_uc010icd.1_Missense_Mutation_p.K174T|WHSC1_uc003gea.1_Missense_Mutation_p.K174T|WHSC1_uc010ice.1_Missense_Mutation_p.K174T|WHSC1_uc003geg.1_Missense_Mutation_p.K174T|WHSC1_uc003geh.1_Missense_Mutation_p.K174T	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	174					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		AGGAGCATAAAATATGACTCC	0.443			T	IGH@	MM								24	46					0	0	1	0	0	
WHSC2	7469	broad.mit.edu	37	4	1985339	1985339	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:1985339G>T	uc003gem.2	-	10	1659	c.1419C>A	c.(1417-1419)TTC>TTA	p.F473L	WHSC2_uc003gek.2_Missense_Mutation_p.F199L|WHSC2_uc003gel.2_Missense_Mutation_p.F387L|WHSC2_uc003gen.2_Missense_Mutation_p.F327L	NM_005663	NP_005654	Q9H3P2	NELFA_HUMAN	Wolf-Hirschhorn syndrome candidate 2 protein	462					multicellular organismal development|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0155)			AGCCGGCCATGAAGCCCAGGA	0.662													21	51					1.10513e-12	1.22773e-12	1	1	0	
POLN	353497	broad.mit.edu	37	4	2172450	2172450	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:2172450G>A	uc003ger.2	-	11	1510	c.1510C>T	c.(1510-1512)CCC>TCC	p.P504S	POLN_uc010ich.1_Missense_Mutation_p.P95S|POLN_uc011bvi.1_Missense_Mutation_p.P504S	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	504					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			CCCGTTCTGGGGAGACTGTTC	0.428								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					51	110					0	0	1	0	0	
POLN	353497	broad.mit.edu	37	4	2210191	2210191	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:2210191C>T	uc003ger.2	-	3	237	c.237G>A	c.(235-237)CAG>CAA	p.Q79Q	POLN_uc010ich.1_5'UTR|POLN_uc011bvi.1_Silent_p.Q79Q	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	79					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			CTCTTGATGTCTGACTTCTTA	0.378								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					28	54					0	0	1	0	0	
MXD4	10608	broad.mit.edu	37	4	2252282	2252282	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:2252282C>T	uc003geu.1	-	6	651	c.619G>A	c.(619-621)GCC>ACC	p.A207T		NM_006454	NP_006445	Q14582	MAD4_HUMAN	MAD4	207					negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|transcription corepressor activity				0						TACGAGAGGGCGGGGCGGCCC	0.706													4	12					0	0	1	0	0	
FAM193A	8603	broad.mit.edu	37	4	2673955	2673955	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:2673955C>A	uc010icl.2	+	11	1665	c.1314C>A	c.(1312-1314)TTC>TTA	p.F438L	FAM193A_uc010ick.2_Missense_Mutation_p.F638L|FAM193A_uc003gfd.2_Missense_Mutation_p.F438L|FAM193A_uc011bvm.1_Missense_Mutation_p.F460L|FAM193A_uc011bvn.1_Missense_Mutation_p.F438L|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.F292L	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	438										ovary(3)	3						GCCATCAGTTCTTGAGCCCAG	0.537													28	53					8.58068e-18	9.97771e-18	1	1	0	
GRK4	2868	broad.mit.edu	37	4	3006044	3006044	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:3006044C>A	uc003ggn.1	+	5	881	c.426C>A	c.(424-426)GCC>GCA	p.A142A	GRK4_uc003ggo.1_Silent_p.A142A|GRK4_uc003ggp.1_Silent_p.A110A|GRK4_uc003ggq.1_Silent_p.A110A	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	142	RGS.|N-terminal.					cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CCAAAAAAGCCTTTGAGGAAT	0.428													41	99					1.68508e-10	1.83104e-10	1	1	0	
HTT	3064	broad.mit.edu	37	4	3088673	3088673	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:3088673G>T	uc011bvq.1	+	3	422	c.277G>T	c.(277-279)GAA>TAA	p.E93*		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	91					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TAGAAAGAAAGAACTTTCAGC	0.353													16	38					6.31663e-08	6.6657e-08	1	1	0	
HTT	3064	broad.mit.edu	37	4	3138026	3138026	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:3138026G>A	uc011bvq.1	+	22	2922	c.2777G>A	c.(2776-2778)CGA>CAA	p.R926Q		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	924	HEAT 5.				establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CCCAGGGTGCGACATGTTGCC	0.368													22	39					0	0	1	0	0	
HTT	3064	broad.mit.edu	37	4	3184144	3184144	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:3184144C>T	uc011bvq.1	+	38	4964	c.4819C>T	c.(4819-4821)CGA>TGA	p.R1607*		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1605					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CAAGTGGAAGCGACTGTCTCG	0.483													25	45					0	0	1	0	0	
HTT	3064	broad.mit.edu	37	4	3201479	3201479	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:3201479G>A	uc011bvq.1	+	42	5540	c.5395G>A	c.(5395-5397)GCA>ACA	p.A1799T		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1797					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GAGAATCACAGCAGCTGCCAC	0.507													29	54					0	0	1	0	0	
HTT	3064	broad.mit.edu	37	4	3210534	3210534	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:3210534C>T	uc011bvq.1	+	47	6338	c.6193C>T	c.(6193-6195)CGT>TGT	p.R2065C		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2063					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GGACAGGTTTCGTCTCTCCAC	0.433													19	52					0	0	1	0	0	
RGS12	6002	broad.mit.edu	37	4	3318097	3318097	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:3318097T>C	uc003ggw.2	+	2	1104	c.200T>C	c.(199-201)GTC>GCC	p.V67A	RGS12_uc003ggu.2_Missense_Mutation_p.V67A|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.V67A|RGS12_uc003ggx.1_Missense_Mutation_p.V67A	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	67	PDZ.					condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		ATACTTGCTGTCAATGAAATC	0.517													20	35					0	0	1	0	0	
HGFAC	3083	broad.mit.edu	37	4	3449301	3449301	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:3449301G>A	uc003ghc.2	+	11	1441	c.1438G>A	c.(1438-1440)GAG>AAG	p.E480K	HGFAC_uc010icw.2_Missense_Mutation_p.E487K	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	480	Peptidase S1.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CTTCGGCATCGAGAAGTACAT	0.662													101	190					0	0	1	0	0	
LRPAP1	4043	broad.mit.edu	37	4	3516638	3516638	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:3516638G>A	uc003ghi.2	-	7	937	c.852C>T	c.(850-852)TTC>TTT	p.F284F		NM_002337	NP_002328	P30533	AMRP_HUMAN	low density lipoprotein receptor-related protein	284	LDL receptor binding (Potential).|Potential.				negative regulation of protein binding|negative regulation of very-low-density lipoprotein particle clearance|protein folding|vesicle-mediated transport	cell surface|integral to membrane|plasma membrane	asialoglycoprotein receptor activity|heparin binding|low-density lipoprotein particle receptor binding|receptor antagonist activity|unfolded protein binding|very-low-density lipoprotein particle receptor binding			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.165)		TTTTGGCTTCGAAGTGCTTGA	0.587													46	89					0	0	1	0	0	
TMEM128	85013	broad.mit.edu	37	4	4248040	4248040	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:4248040T>G	uc003ghr.1	-	2	158	c.128A>C	c.(127-129)AAA>ACA	p.K43T	TMEM128_uc003ghq.1_Missense_Mutation_p.K19T|TMEM128_uc003ghs.2_Missense_Mutation_p.K43T|TMEM128_uc011bvv.1_Missense_Mutation_p.K43T|TMEM128_uc011bvw.1_Missense_Mutation_p.K43T	NM_032927	NP_116316	Q5BJH2	TM128_HUMAN	transmembrane protein 128	43				K -> E (in Ref. 2; CAI45928).		integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (64;0.166)		TGGAAGAGGTTTCTCCTTTTT	0.353													37	74					0	0	1	0	0	
CYTL1	54360	broad.mit.edu	37	4	5018581	5018581	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:5018581C>A	uc003gig.2	-	3	334	c.309G>T	c.(307-309)ATG>ATT	p.M103I		NM_018659	NP_061129	Q9NRR1	CYTL1_HUMAN	cytokine-like 1 precursor	103					signal transduction	extracellular space|soluble fraction	receptor binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.164)		AGAACGAGTTCATGATGGTGT	0.498													66	111					2.60599e-31	3.19155e-31	1	1	0	
C4orf6	10141	broad.mit.edu	37	4	5528021	5528021	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:5528021C>T	uc003gii.2	+	2	420	c.245C>T	c.(244-246)ACT>ATT	p.T82I		NM_005750	NP_005741	Q99440	CD006_HUMAN	chromosome 4 open reading frame 6	82					nervous system development						0						CCCAGTGTGACTGTCTCCGGT	0.458													19	44					0	0	1	0	0	
EVC2	132884	broad.mit.edu	37	4	5683025	5683025	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:5683025T>G	uc003gij.2	-	7	886	c.832A>C	c.(832-834)AAA>CAA	p.K278Q	EVC2_uc011bwb.1_5'UTR|EVC2_uc003gik.2_Missense_Mutation_p.K198Q	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	278						integral to membrane				large_intestine(3)|ovary(2)	5						AAAAGCACTTTCAGCTGTGTT	0.468													15	35					0	0	1	0	0	
EVC	2121	broad.mit.edu	37	4	5750029	5750029	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:5750029C>T	uc003gil.1	+	8	1278	c.1094C>T	c.(1093-1095)GCT>GTT	p.A365V	EVC_uc003gim.1_RNA|CRMP1_uc003gin.1_Silent_p.E458E	NM_153717	NP_714928	P57679	EVC_HUMAN	Ellis van Creveld syndrome protein	365					muscle organ development	integral to membrane				ovary(1)|skin(1)	2		Myeloproliferative disorder(84;0.117)				GAGCTGCAGGCTCTGGTAATG	0.473													11	34					0	0	1	0	0	
CRMP1	1400	broad.mit.edu	37	4	5862925	5862925	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:5862925C>T	uc003gip.2	-	4	242	c.141G>A	c.(139-141)GAG>GAA	p.E47E	CRMP1_uc003gin.1_Intron|CRMP1_uc003giq.2_Silent_p.E47E|CRMP1_uc003gir.2_Silent_p.E42E|CRMP1_uc003gis.2_Silent_p.E161E	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	47					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		CGATTAAGTTCTCTCCTATTT	0.453													32	64					0	0	1	0	0	
C4orf50	389197	broad.mit.edu	37	4	5961154	5961154	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:5961154C>A	uc003git.1	-	7	869	c.779G>T	c.(778-780)AGC>ATC	p.S260I		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	260										pancreas(2)|breast(1)	3						GCTGCAAATGCTTTGTCTAAG	0.493													27	87					1.75199e-13	1.95935e-13	1	1	0	
JAKMIP1	152789	broad.mit.edu	37	4	6066724	6066724	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:6066724C>A	uc003giu.3	-	9	1590	c.1314G>T	c.(1312-1314)GTG>GTT	p.V438V	JAKMIP1_uc010idb.1_Silent_p.V438V|JAKMIP1_uc010idc.1_Silent_p.V253V|JAKMIP1_uc010idd.1_Silent_p.V438V|JAKMIP1_uc011bwc.1_Silent_p.V273V|JAKMIP1_uc003giv.3_Silent_p.V438V|JAKMIP1_uc010ide.2_Silent_p.V438V	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	438	Mediates interaction with TYK2 and GABBR1.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						AAAATGTCTCCACAACATGCT	0.512													22	81					1.55795e-14	1.75964e-14	1	1	0	
JAKMIP1	152789	broad.mit.edu	37	4	6114646	6114646	+	Translation_Start_Site	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:6114646G>A	uc003giu.3	-	2	208	c.-68C>T	c.(-70--66)CACGC>CATGC		JAKMIP1_uc010idb.1_Translation_Start_Site|JAKMIP1_uc010idc.1_Translation_Start_Site|JAKMIP1_uc010idd.1_Translation_Start_Site|JAKMIP1_uc011bwc.1_Translation_Start_Site|JAKMIP1_uc003giv.3_Translation_Start_Site|JAKMIP1_uc010ide.2_Translation_Start_Site	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein						protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GCCAGCAGGCGTGGCTACCAG	0.607													9	10					0	0	1	0	0	
CCDC96	257236	broad.mit.edu	37	4	7043201	7043201	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:7043201G>A	uc003gjv.2	-	1	1528	c.1465C>T	c.(1465-1467)CGG>TGG	p.R489W	TADA2B_uc003gjw.3_5'Flank|TADA2B_uc010idi.2_5'Flank	NM_153376	NP_699207	Q2M329	CCD96_HUMAN	coiled-coil domain containing 96	489											0						TTGTCCGTCCGCAGCCCCTCT	0.557													73	125					0	0	1	0	0	
PSAPL1	768239	broad.mit.edu	37	4	7436430	7436430	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:7436430C>T	uc011bwj.1	-	1	271	c.177G>A	c.(175-177)GCG>GCA	p.A59A	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	59	Saposin A-type 1.				sphingolipid metabolic process	extracellular region|lysosome					0						GCAGAGACTTCGCGGTGGGTT	0.622													4	9					0	0	1	0	0	
SORCS2	57537	broad.mit.edu	37	4	7705057	7705057	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:7705057C>T	uc003gkb.3	+	13	1719	c.1719C>T	c.(1717-1719)ATC>ATT	p.I573I	SORCS2_uc011bwi.1_Silent_p.I401I	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	573	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						GCGGCGTGATCGTGGCCATCA	0.602													8	17					0	0	1	0	0	
SORCS2	57537	broad.mit.edu	37	4	7706006	7706006	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:7706006C>A	uc003gkb.3	+	14	1863	c.1863C>A	c.(1861-1863)GTC>GTA	p.V621V	SORCS2_uc011bwi.1_Silent_p.V449V	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	621	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						AGACGCTGGTCATGACGTGAG	0.662													3	13					1	1	1	1	0	
SH3TC1	54436	broad.mit.edu	37	4	8214461	8214461	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:8214461A>C	uc003gkv.3	+	4	382	c.281A>C	c.(280-282)AAG>ACG	p.K94T	SH3TC1_uc003gkw.3_Missense_Mutation_p.K18T|SH3TC1_uc003gkx.3_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	94							binding			large_intestine(2)|pancreas(1)	3						GTGCGGAGGAAGAGCAGACTG	0.667													14	17					0	0	1	0	0	
HTRA3	94031	broad.mit.edu	37	4	8305989	8305989	+	Silent	SNP	G	A	A	rs145508993		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:8305989G>A	uc003gla.2	+	8	1383	c.1179G>A	c.(1177-1179)CCG>CCA	p.P393P		NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	393	PDZ.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						AGGTTGCGCCGAATTCACCTT	0.597													21	32					0	0	1	0	0	
GPR78	27201	broad.mit.edu	37	4	8583065	8583065	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:8583065G>A	uc003glk.2	+	1	775	c.356G>A	c.(355-357)CGA>CAA	p.R119Q	CPZ_uc003gll.2_RNA	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	119	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						GGACGCCTGCGACCGCGCTAT	0.706													7	8					0	0	1	0	0	
GPR78	27201	broad.mit.edu	37	4	8589021	8589021	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:8589021G>A	uc003glk.2	+	3	1442	c.1023G>A	c.(1021-1023)CCG>CCA	p.P341P	CPZ_uc003gll.2_Intron	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	341	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						AGAGAACCCCGCGCCCAGCGT	0.642													28	60					0	0	1	0	0	
HS3ST1	9957	broad.mit.edu	37	4	11400898	11400898	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:11400898C>T	uc003gmq.2	-	2	1055	c.732G>A	c.(730-732)TCG>TCA	p.S244S		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	244						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						AGTAGAAGTTCGAAGCATTGA	0.572													23	40					0	0	1	0	0	
HSP90AB2P	391634	broad.mit.edu	37	4	13339641	13339641	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:13339641C>T	uc003gms.2	+	1		c.4605C>T				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						GTATATATGACCGAGCCCATT	0.522													9	15					0	0	1	0	0	
RAB28	9364	broad.mit.edu	37	4	13383192	13383192	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:13383192T>G	uc003gmu.2	-	5	633	c.418A>C	c.(418-420)AAA>CAA	p.K140Q	RAB28_uc003gmt.2_Missense_Mutation_p.K140Q|RAB28_uc011bwz.1_Missense_Mutation_p.K140Q|RAB28_uc003gmv.2_RNA	NM_001017979	NP_001017979	P51157	RAB28_HUMAN	RAB28, member RAS oncogene family isoform 1	140					small GTPase mediated signal transduction	plasma membrane	GDP binding|GTP binding|GTPase activity			ovary(1)|skin(1)	2						TTTTCAGGTTTTATTGTTCGC	0.318													13	36					0	0	1	0	0	
BOD1L	259282	broad.mit.edu	37	4	13579056	13579056	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:13579056T>G	uc003gmz.1	-	24	8972	c.8855A>C	c.(8854-8856)AAA>ACA	p.K2952T		NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2952							DNA binding			ovary(5)|breast(1)	6						GAGAGAACGTTTGGGTTTTCT	0.353													10	20					0	0	1	0	0	
BOD1L	259282	broad.mit.edu	37	4	13603585	13603585	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:13603585T>C	uc003gmz.1	-	10	5056	c.4939A>G	c.(4939-4941)ACA>GCA	p.T1647A	BOD1L_uc010idr.1_Missense_Mutation_p.T984A	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1647							DNA binding			ovary(5)|breast(1)	6						TTTTCCTCTGTCACAACGCTA	0.438													86	169					0	0	1	0	0	
BOD1L	259282	broad.mit.edu	37	4	13603599	13603599	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:13603599A>G	uc003gmz.1	-	10	5042	c.4925T>C	c.(4924-4926)GTA>GCA	p.V1642A	BOD1L_uc010idr.1_Missense_Mutation_p.V979A	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1642							DNA binding			ovary(5)|breast(1)	6						AACGCTATTTACATTGGCTTC	0.453													76	151					0	0	1	0	0	
CC2D2A	57545	broad.mit.edu	37	4	15504497	15504497	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:15504497G>A	uc010idv.2	+	7	634	c.389G>A	c.(388-390)CGC>CAC	p.R130H	CC2D2A_uc003gnx.2_Missense_Mutation_p.R81H|CC2D2A_uc003gnu.2_Missense_Mutation_p.R130H|CC2D2A_uc003gnv.2_Missense_Mutation_p.R130H	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	130					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						CGGCCCAGACGCTTACGAAGT	0.433													6	11					0	0	1	0	0	
CC2D2A	57545	broad.mit.edu	37	4	15581677	15581677	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:15581677C>T	uc010idv.2	+	31	4103	c.3858C>T	c.(3856-3858)TGC>TGT	p.C1286C	CC2D2A_uc003gnx.2_Silent_p.C1178C|CC2D2A_uc003gnz.1_RNA|CC2D2A_uc003goa.1_RNA	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	1286					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						ATCGTCAGTGCCTTACAACAG	0.373													10	118					0	0	1	0	0	
CC2D2A	57545	broad.mit.edu	37	4	15589443	15589443	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:15589443T>G	uc010idv.2	+	33	4315	c.4070T>G	c.(4069-4071)TTT>TGT	p.F1357C	CC2D2A_uc003gnx.2_Missense_Mutation_p.F1249C|CC2D2A_uc003gnz.1_RNA|CC2D2A_uc003goa.1_RNA	NM_001080522	NP_001073991	Q9P2K1	C2D2A_HUMAN	coiled-coil and C2 domain containing 2A isoform	1357					cell projection organization	cilium|microtubule basal body				pancreas(2)|ovary(1)	3						TGTCAGCAATTTCTTGATCTC	0.388													7	15					0	0	1	0	0	
FBXL5	26234	broad.mit.edu	37	4	15627020	15627020	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:15627020T>G	uc003goc.1	-	9	1808	c.1705A>C	c.(1705-1707)ATG>CTG	p.M569L	FBXL5_uc010idw.1_Missense_Mutation_p.M482L|FBXL5_uc003gob.1_Missense_Mutation_p.M443L|FBXL5_uc010idx.1_Missense_Mutation_p.M568L|FBXL5_uc003god.1_Missense_Mutation_p.M552L|FBXL5_uc010idy.1_Missense_Mutation_p.M569L	NM_012161	NP_036293	Q9UKA1	FBXL5_HUMAN	F-box and leucine-rich repeat protein 5 isoform	569					iron ion homeostasis|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|SCF ubiquitin ligase complex	iron ion binding|protein binding|ubiquitin-protein ligase activity				0						TTTCTACACATTGCAGAAGAT	0.418													15	27					0	0	1	0	0	
CD38	952	broad.mit.edu	37	4	15850203	15850203	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:15850203C>A	uc011bxc.1	+	8	988	c.881C>A	c.(880-882)TCA>TAA	p.S294*	CD38_uc003gol.1_Nonsense_Mutation_p.S294*	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	294	Extracellular (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						CCTGAGGATTCATCTTGCACA	0.428													14	39					7.93312e-07	8.28085e-07	1	1	0	
CLRN2	645104	broad.mit.edu	37	4	17528593	17528593	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:17528593C>T	uc003gpg.1	+	3	689	c.587C>T	c.(586-588)GCT>GTT	p.A196V		NM_001079827	NP_001073296	A0PK11	CLRN2_HUMAN	clarin 2	196	Helical; (Potential).					integral to membrane					0						GTGGCCAGCGCTTCGGCCCAT	0.527													29	47					0	0	1	0	0	
NCAPG	64151	broad.mit.edu	37	4	17838918	17838918	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:17838918G>A	uc003gpp.2	+	15	2422	c.2246G>A	c.(2245-2247)CGA>CAA	p.R749Q	NCAPG_uc011bxj.1_Missense_Mutation_p.R258Q	NM_022346	NP_071741	Q9BPX3	CND3_HUMAN	chromosome condensation protein G	749					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	protein binding			large_intestine(1)	1				STAD - Stomach adenocarcinoma(129;0.18)		GTTCAACTTCGACATTGCCTA	0.428													24	58					0	0	1	0	0	
NCAPG	64151	broad.mit.edu	37	4	17845005	17845005	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:17845005G>A	uc003gpp.2	+	21	3181	c.3005G>A	c.(3004-3006)AGT>AAT	p.S1002N	NCAPG_uc011bxj.1_Missense_Mutation_p.S511N|LCORL_uc003gpq.2_3'UTR|LCORL_uc011bxk.1_3'UTR	NM_022346	NP_071741	Q9BPX3	CND3_HUMAN	chromosome condensation protein G	1002					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|nucleus	protein binding			large_intestine(1)	1				STAD - Stomach adenocarcinoma(129;0.18)		CTAGAAAAAAGTAAACTTAAC	0.353													7	121					0	0	1	0	0	
SLIT2	9353	broad.mit.edu	37	4	20598177	20598177	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:20598177G>A	uc003gpr.1	+	32	3664	c.3460G>A	c.(3460-3462)GAA>AAA	p.E1154K	SLIT2_uc003gps.1_Missense_Mutation_p.E1146K	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1154	EGF-like 6.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CTATCAGGGAGAAAAGTGTGA	0.403													24	41					0	0	1	0	0	
SLIT2	9353	broad.mit.edu	37	4	20618673	20618673	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:20618673T>G	uc003gpr.1	+	35	4192	c.3988T>G	c.(3988-3990)TTG>GTG	p.L1330V	SLIT2_uc003gps.1_Missense_Mutation_p.L1322V	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1330	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AACAGGCATTTTGCCTGGCTG	0.587													26	51					0	0	1	0	0	
DHX15	1665	broad.mit.edu	37	4	24550623	24550623	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:24550623C>A	uc003gqx.2	-	6	1271	c.1103G>T	c.(1102-1104)AGA>ATA	p.R368I		NM_001358	NP_001349	O43143	DHX15_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 15	368	Helicase C-terminal.				mRNA processing	U12-type spliceosomal complex	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(1)	1		Breast(46;0.0503)				ACGCTTTATTCTCTTACAGGC	0.343													29	46					1.68575e-08	1.7923e-08	1	1	0	
LGI2	55203	broad.mit.edu	37	4	25019737	25019737	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:25019737A>C	uc003grf.2	-	6	628	c.529T>G	c.(529-531)TGG>GGG	p.W177G		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	177	LRRCT.					extracellular region					0		Breast(46;0.173)				AGGTATAGCCACTTGGCTTTG	0.383													34	80					0	0	1	0	0	
LGI2	55203	broad.mit.edu	37	4	25030162	25030162	+	Missense_Mutation	SNP	C	T	T	rs139692298		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:25030162C>T	uc003grf.2	-	2	335	c.236G>A	c.(235-237)CGA>CAA	p.R79Q		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	79						extracellular region					0		Breast(46;0.173)				GGAAAACATTCGGTCCTTGAT	0.522													7	13					0	0	1	0	0	
ZCCHC4	29063	broad.mit.edu	37	4	25315706	25315706	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:25315706G>T	uc003grl.3	+	2	202	c.166G>T	c.(166-168)GAA>TAA	p.E56*		NM_024936	NP_079212	Q9H5U6	ZCHC4_HUMAN	zinc finger, CCHC domain containing 4	56							methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(2)	2		Breast(46;0.0503)				CCAAGGGAAAGAAGAAACTCG	0.363													63	112					1.53582e-20	1.8142e-20	1	1	0	
SLC34A2	10568	broad.mit.edu	37	4	25665855	25665855	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:25665855C>A	uc003grr.2	+	4	363	c.282C>A	c.(280-282)TTC>TTA	p.F94L	SLC34A2_uc003grs.2_Missense_Mutation_p.F93L|SLC34A2_uc010iev.2_Missense_Mutation_p.F93L	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	94	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TTCTCTGTTTCTTCCAAGGGA	0.478													55	81					7.47603e-22	8.88748e-22	1	1	0	
SEL1L3	23231	broad.mit.edu	37	4	25769163	25769163	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:25769163G>A	uc003gru.3	-	19	2981	c.2829C>T	c.(2827-2829)ATC>ATT	p.I943I	SEL1L3_uc003grt.2_5'UTR|SEL1L3_uc003grv.2_Silent_p.I350I	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	943						integral to membrane	binding				0						AAGGAGCATCGATTTGAAAAA	0.373													6	5					0	0	1	0	0	
SEL1L3	23231	broad.mit.edu	37	4	25834646	25834646	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:25834646G>A	uc003gru.3	-	5	1221	c.1069C>T	c.(1069-1071)CGA>TGA	p.R357*		NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	357						integral to membrane	binding				0						ATATCCAGTCGAAACCACTCC	0.393													29	55					0	0	1	0	0	
RBPJ	3516	broad.mit.edu	37	4	26407849	26407849	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:26407849C>T	uc003grx.1	+	4	387	c.151C>T	c.(151-153)CTT>TTT	p.L51F	RBPJ_uc003gry.1_Missense_Mutation_p.L36F|RBPJ_uc003grz.1_Missense_Mutation_p.L51F|RBPJ_uc011bxt.1_Missense_Mutation_p.L51F|RBPJ_uc003gsa.1_Missense_Mutation_p.L37F|RBPJ_uc003gsb.1_Missense_Mutation_p.L38F|RBPJ_uc003gsc.1_Missense_Mutation_p.L37F	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	51					DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				AGTACTTATTCTTCATGCAAA	0.318													39	72					0	0	1	0	0	
CCKAR	886	broad.mit.edu	37	4	26483749	26483749	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:26483749G>A	uc003gse.1	-	5	951	c.798C>T	c.(796-798)AGC>AGT	p.S266S		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	266	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	AACACCCATCGCTGTCCTCAT	0.602													32	63					0	0	1	0	0	
TBC1D19	55296	broad.mit.edu	37	4	26685314	26685314	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:26685314G>A	uc003gsf.3	+	12	1104	c.834G>A	c.(832-834)GAG>GAA	p.E278E	TBC1D19_uc010iew.2_Silent_p.E278E|TBC1D19_uc011bxu.1_Silent_p.E213E	NM_018317	NP_060787	Q8N5T2	TBC19_HUMAN	TBC1 domain family, member 19	278	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			breast(1)	1		Breast(46;0.0503)				TGTATTATGAGCAGCTTAAGA	0.269													31	78					0	0	1	0	0	
STIM2	57620	broad.mit.edu	37	4	27019550	27019550	+	Silent	SNP	G	A	A	rs148666846		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:27019550G>A	uc003gsh.3	+	12	2208	c.1992G>A	c.(1990-1992)GCG>GCA	p.A664A	STIM2_uc003gsg.3_Silent_p.A656A|STIM2_uc010iex.2_Silent_p.A656A|STIM2_uc010iey.2_Silent_p.A280A	NM_020860	NP_065911	Q9P246	STIM2_HUMAN	stromal interaction molecule 2	569	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|cellular calcium ion homeostasis|negative regulation of calcium ion transport via store-operated calcium channel activity	endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel regulator activity|calcium ion binding|protein binding			central_nervous_system(1)|skin(1)	2		Breast(46;0.0503)				GTTGCCCTGCGCTTTATCGAA	0.532													122	262					0	0	1	0	0	
PCDH7	5099	broad.mit.edu	37	4	30723560	30723560	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:30723560C>T	uc003gsk.1	+	1	1524	c.516C>T	c.(514-516)TTC>TTT	p.F172F	PCDH7_uc011bxw.1_Silent_p.F172F|PCDH7_uc011bxx.1_Silent_p.F172F	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	172	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						ACCGCGACTTCGGCCGCAACG	0.483													7	8					0	0	1	0	0	
PCDH7	5099	broad.mit.edu	37	4	30723906	30723906	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:30723906C>T	uc003gsk.1	+	1	1870	c.862C>T	c.(862-864)CGC>TGC	p.R288C	PCDH7_uc011bxw.1_Intron|PCDH7_uc011bxx.1_Missense_Mutation_p.R288C	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	288	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						CGACCCGCCTCGCTCCTCGCA	0.672													5	14					0	0	1	0	0	
PTTG2	10744	broad.mit.edu	37	4	37962363	37962363	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:37962363C>A	uc011bye.1	+	1	308	c.308C>A	c.(307-309)TCT>TAT	p.S103Y	TBC1D1_uc003gtb.2_Intron|TBC1D1_uc011byd.1_Intron|TBC1D1_uc010ifd.2_Intron	NM_006607	NP_006598	Q9NZH5	PTTG2_HUMAN	pituitary tumor-transforming 2	103					chromosome organization|DNA metabolic process	cytoplasm|nucleus	SH3 domain binding				0						ACAAAAAGTTCTGTTCCTGCC	0.408													49	110					8.72198e-27	1.05727e-26	1	1	0	
KLF3	51274	broad.mit.edu	37	4	38690382	38690382	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:38690382G>A	uc003gth.3	+	3	566	c.234G>A	c.(232-234)TCG>TCA	p.S78S	KLF3_uc003gtg.2_Silent_p.S78S	NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	78	Pro-rich.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						CTGGGAATTCGCCCTCCTCTC	0.567													27	58					0	0	1	0	0	
TLR10	81793	broad.mit.edu	37	4	38774898	38774898	+	Nonsense_Mutation	SNP	G	A	A	rs145139818	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:38774898G>A	uc003gti.2	-	2	2693	c.2314C>T	c.(2314-2316)CGA>TGA	p.R772*	TLR10_uc003gtj.2_Nonsense_Mutation_p.R772*|TLR10_uc003gtk.2_Nonsense_Mutation_p.R772*	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	772	TIR.|Cytoplasmic (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						ATAGCAGCTCGAAGGTTTGCC	0.418													37	72					0	0	1	0	0	
TLR10	81793	broad.mit.edu	37	4	38775961	38775961	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:38775961G>A	uc003gti.2	-	2	1630	c.1251C>T	c.(1249-1251)TGC>TGT	p.C417C	TLR10_uc003gtj.2_Silent_p.C417C|TLR10_uc003gtk.2_Silent_p.C417C	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	417	Extracellular (Potential).|LRR 11.				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						CTGGCCATGAGCAATTTTCAT	0.358													23	97					0	0	1	0	0	
TLR1	7096	broad.mit.edu	37	4	38799017	38799017	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:38799017G>T	uc003gtl.2	-	4	1710	c.1436C>A	c.(1435-1437)TCT>TAT	p.S479Y		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	479	Extracellular (Potential).|LRR 11.				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						GTCAGTTAAAGAATTGAAAGC	0.403													60	80					7.05995e-25	8.49517e-25	1	1	0	
TLR1	7096	broad.mit.edu	37	4	38799487	38799487	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:38799487G>T	uc003gtl.2	-	4	1240	c.966C>A	c.(964-966)ATC>ATA	p.I322I		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	322	Extracellular (Potential).				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						TATTCGAAAAGATTTCATAGA	0.398													22	59					2.89027e-11	3.162e-11	1	1	0	
TMEM156	80008	broad.mit.edu	37	4	39000286	39000286	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:39000286A>C	uc003gto.2	-	2	440	c.332T>G	c.(331-333)TTT>TGT	p.F111C	TMEM156_uc010ifj.2_Missense_Mutation_p.F111C	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	111	Extracellular (Potential).					integral to membrane				skin(1)	1						CTGAGAAATAAAATCCATGTT	0.328													15	17					0	0	1	0	0	
WDR19	57728	broad.mit.edu	37	4	39276564	39276564	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:39276564C>T	uc003gtv.2	+	33	3856	c.3702C>T	c.(3700-3702)ATC>ATT	p.I1234I	WDR19_uc011byi.1_Silent_p.I1074I|WDR19_uc003gtw.1_Silent_p.I831I	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	1234					cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						AAAAGAAGATCGAGGGAATGG	0.438													19	37					0	0	1	0	0	
RFC1	5981	broad.mit.edu	37	4	39290437	39290437	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:39290437T>G	uc003gty.1	-	25	3525	c.3391A>C	c.(3391-3393)AAA>CAA	p.K1131Q	RFC1_uc003gtx.1_Missense_Mutation_p.K1130Q	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	1131					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						TTTTCTGGTTTTGAAGGCTTT	0.348													29	64					0	0	1	0	0	
PDS5A	23244	broad.mit.edu	37	4	39905808	39905808	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:39905808G>A	uc003guv.3	-	12	1777	c.1237C>T	c.(1237-1239)CGA>TGA	p.R413*	PDS5A_uc010ifo.2_Nonsense_Mutation_p.R373*|PDS5A_uc003guw.3_Nonsense_Mutation_p.R413*	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	413	HEAT.				cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						TTTCTTACTCGCCACTAAAAA	0.388													6	15					0	0	1	0	0	
N4BP2	55728	broad.mit.edu	37	4	40119490	40119490	+	Missense_Mutation	SNP	C	T	T	rs139764100		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:40119490C>T	uc003guy.3	+	8	2004	c.1666C>T	c.(1666-1668)CGT>TGT	p.R556C	N4BP2_uc010ifq.2_Missense_Mutation_p.R476C|N4BP2_uc010ifr.2_Missense_Mutation_p.R476C	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	556						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						AATTTTCAGGCGTAACATTCA	0.303													13	24					0	0	1	0	0	
APBB2	323	broad.mit.edu	37	4	40823991	40823991	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:40823991A>C	uc003gvl.2	-	17	2636	c.2006T>G	c.(2005-2007)TTT>TGT	p.F669C	APBB2_uc010ifu.2_Missense_Mutation_p.F241C|APBB2_uc003gvm.2_Missense_Mutation_p.F647C|APBB2_uc003gvn.2_Missense_Mutation_p.F670C|APBB2_uc003gvk.2_Missense_Mutation_p.F121C	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	669	PID 2.				cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						GATGAAGGCAAATGTGTGGAC	0.542													27	48					0	0	1	0	0	
DCAF4L1	285429	broad.mit.edu	37	4	41984086	41984086	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:41984086G>A	uc003gwk.2	+	1	374	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	93										skin(1)	1						GAACCAGGTCGAAGTCGAAGG	0.537													8	78					0	0	1	0	0	
ATP8A1	10396	broad.mit.edu	37	4	42414996	42414996	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:42414996G>A	uc003gwr.2	-	37	3664	c.3432C>T	c.(3430-3432)ATC>ATT	p.I1144I	ATP8A1_uc003gwq.2_Silent_p.I370I|ATP8A1_uc003gws.2_Silent_p.I1129I	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1144	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	ACTGTGAAACGATTCCATTTT	0.438													25	28					0	0	1	0	0	
ATP8A1	10396	broad.mit.edu	37	4	42577698	42577698	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:42577698C>T	uc003gwr.2	-	13	1379	c.1147G>A	c.(1147-1149)GAA>AAA	p.E383K	ATP8A1_uc003gws.2_Missense_Mutation_p.E383K|ATP8A1_uc011byz.1_Missense_Mutation_p.E383K	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	383	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TCTGTGGGTTCATAGTGCATG	0.328													18	169					0	0	1	0	0	
GRXCR1	389207	broad.mit.edu	37	4	43032469	43032469	+	Missense_Mutation	SNP	G	A	A	rs146696590	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:43032469G>A	uc003gwt.2	+	4	785	c.785G>A	c.(784-786)CGA>CAA	p.R262Q		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	262					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						TCCATGTTTCGAAACTGCTTC	0.468													57	117					0	0	1	0	0	
GNPDA2	132789	broad.mit.edu	37	4	44709820	44709820	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:44709820C>T	uc003gwy.2	-	6	875	c.718G>A	c.(718-720)GAT>AAT	p.D240N	GNPDA2_uc010iga.2_Missense_Mutation_p.D206N|GNPDA2_uc011bzb.1_Missense_Mutation_p.D170N|GNPDA2_uc003gwz.1_Missense_Mutation_p.D240N	NM_138335	NP_612208	Q8TDQ7	GNPI2_HUMAN	glucosamine-6-phosphate deaminase 2	240					N-acetylglucosamine metabolic process	cytoplasm	glucosamine-6-phosphate deaminase activity|hydrolase activity			ovary(1)	1						GCATCTTCATCGCATACAAAA	0.403													13	27					0	0	1	0	0	
COX7B2	170712	broad.mit.edu	37	4	46737011	46737011	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:46737011G>A	uc003gxf.2	-	3	379	c.199C>T	c.(199-201)CTA>TTA	p.L67L	COX7B2_uc010ige.2_RNA	NM_130902	NP_570972	Q8TF08	CX7B2_HUMAN	cytochrome c oxidase subunit VIIb2 precursor	67	Mitochondrial intermembrane (By similarity).					integral to membrane|mitochondrial respiratory chain	cytochrome-c oxidase activity				0						ACAGGGGATAGGTTCCATTCT	0.403													33	71					0	0	1	0	0	
GABRA4	2557	broad.mit.edu	37	4	46930668	46930668	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:46930668A>C	uc003gxg.2	-	9	1378	c.1239T>G	c.(1237-1239)TCT>TCG	p.S413S		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	413	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CAACTGTGGAAGATTTGCTTG	0.423													32	59					0	0	1	0	0	
GABRB1	2560	broad.mit.edu	37	4	47405722	47405722	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47405722G>A	uc003gxh.2	+	7	1203	c.829G>A	c.(829-831)GCA>ACA	p.A277T	GABRB1_uc011bze.1_Missense_Mutation_p.A207T	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	277	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AGCCAGAGTCGCACTAGGTAA	0.398													21	53					0	0	1	0	0	
ATP10D	57205	broad.mit.edu	37	4	47593305	47593305	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47593305A>C	uc003gxk.1	+	23	4352	c.4188A>C	c.(4186-4188)GGA>GGC	p.G1396G	ATP10D_uc003gxl.1_Silent_p.G644G	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1396	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						TTGAGCAAGGAAACTTATCTC	0.458													62	122					0	0	1	0	0	
CORIN	10699	broad.mit.edu	37	4	47597786	47597786	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47597786G>A	uc003gxm.2	-	22	3174	c.3081C>T	c.(3079-3081)GTC>GTT	p.V1027V	CORIN_uc011bzf.1_Silent_p.V888V|CORIN_uc011bzg.1_Silent_p.V960V	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	1027	Extracellular (Potential).|Peptidase S1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TAATCCATTCGACGAAATATG	0.413													29	66					0	0	1	0	0	
CORIN	10699	broad.mit.edu	37	4	47602261	47602261	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47602261G>A	uc003gxm.2	-	21	3009	c.2916C>T	c.(2914-2916)GGC>GGT	p.G972G	CORIN_uc011bzf.1_Silent_p.G833G|CORIN_uc011bzg.1_Silent_p.G905G	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	972	Extracellular (Potential).|Peptidase S1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CAGACTCATAGCCAGCACATA	0.423													28	63					0	0	1	0	0	
CORIN	10699	broad.mit.edu	37	4	47663851	47663851	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47663851C>A	uc003gxm.2	-	12	1705	c.1612G>T	c.(1612-1614)GAA>TAA	p.E538*	CORIN_uc011bzf.1_Nonsense_Mutation_p.E399*|CORIN_uc011bzg.1_Nonsense_Mutation_p.E471*|CORIN_uc011bzh.1_Nonsense_Mutation_p.E501*|CORIN_uc011bzi.1_Nonsense_Mutation_p.E501*	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	538	Extracellular (Potential).|FZ 2.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						TCACAGCGTTCTTTAGAGTGT	0.413													16	40					0.000308642	0.000314477	1	1	0	
CORIN	10699	broad.mit.edu	37	4	47667215	47667215	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47667215T>G	uc003gxm.2	-	11	1516	c.1423A>C	c.(1423-1425)AAT>CAT	p.N475H	CORIN_uc011bzf.1_Missense_Mutation_p.N336H|CORIN_uc011bzg.1_Missense_Mutation_p.N408H|CORIN_uc011bzh.1_Missense_Mutation_p.N438H|CORIN_uc011bzi.1_Missense_Mutation_p.N438H	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	475	Extracellular (Potential).|FZ 2.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CCAAAATAATTTGGATAACTT	0.363													28	74					0	0	1	0	0	
CORIN	10699	broad.mit.edu	37	4	47765400	47765400	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47765400C>A	uc003gxm.2	-	4	706	c.613G>T	c.(613-615)GAC>TAC	p.D205Y	CORIN_uc011bzf.1_Missense_Mutation_p.D66Y|CORIN_uc011bzg.1_Missense_Mutation_p.D138Y|CORIN_uc011bzh.1_Missense_Mutation_p.D205Y|CORIN_uc011bzi.1_Missense_Mutation_p.D205Y|CORIN_uc003gxn.3_Missense_Mutation_p.D205Y	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	205	Extracellular (Potential).|FZ 1.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						AAATACCTGTCATCGCCATCA	0.413													8	17					0.000274275	0.000279565	1	1	0	
NFXL1	152518	broad.mit.edu	37	4	47887941	47887941	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47887941C>T	uc010igh.2	-	13	1796	c.1619G>A	c.(1618-1620)GGC>GAC	p.G540D	NFXL1_uc003gxp.2_Missense_Mutation_p.G540D|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.G540D	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	540						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						ACGTTCTCGGCCACAGGGCAC	0.438													80	161					0	0	1	0	0	
CNGA1	1259	broad.mit.edu	37	4	47939313	47939313	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47939313T>G	uc003gxt.3	-	11	1464	c.1198A>C	c.(1198-1200)ATT>CTT	p.I400L	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.I469L	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	400	Extracellular (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						ATGTTGGAAATCATAGAACCT	0.388													34	94					0	0	1	0	0	
CNGA1	1259	broad.mit.edu	37	4	47942804	47942804	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:47942804C>T	uc003gxt.3	-	10	906	c.640G>A	c.(640-642)GAT>AAT	p.D214N	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.D283N	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	214	Helical; Name=H2; (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						ACAAACATATCGATTAAATAG	0.289													18	69					0	0	1	0	0	
SLAIN2	57606	broad.mit.edu	37	4	48371900	48371900	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:48371900A>C	uc003gya.3	+	2	568	c.424A>C	c.(424-426)ATG>CTG	p.M142L		NM_020846	NP_065897	Q9P270	SLAI2_HUMAN	SLAIN motif family, member 2	142						centrosome					0						ACTTACACCAATGCAGAAATC	0.363													36	40					0	0	1	0	0	
SLC10A4	201780	broad.mit.edu	37	4	48486071	48486071	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:48486071G>A	uc003gyc.2	+	1	712	c.493G>A	c.(493-495)GAG>AAG	p.E165K		NM_152679	NP_689892	Q96EP9	NTCP4_HUMAN	solute carrier family 10, member 4	165	Extracellular (Potential).					integral to membrane	bile acid:sodium symporter activity			central_nervous_system(1)	1						CAAGCTGGACGAGGTGGCCGC	0.677													4	24					0	0	1	0	0	
SLC10A4	201780	broad.mit.edu	37	4	48490559	48490559	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:48490559T>G	uc003gyc.2	+	3	1136	c.917T>G	c.(916-918)TTT>TGT	p.F306C	ZAR1_uc003gyd.2_5'Flank	NM_152679	NP_689892	Q96EP9	NTCP4_HUMAN	solute carrier family 10, member 4	306	Helical; (Potential).					integral to membrane	bile acid:sodium symporter activity			central_nervous_system(1)	1						ATAGCAATTTTTATGCCTTTG	0.468													80	153					0	0	1	0	0	
FRYL	285527	broad.mit.edu	37	4	48559550	48559550	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:48559550G>A	uc003gyh.1	-	34	4650	c.4045C>T	c.(4045-4047)CGC>TGC	p.R1349C	FRYL_uc003gyk.2_Missense_Mutation_p.R1349C|FRYL_uc003gyg.1_Missense_Mutation_p.R45C|FRYL_uc003gyi.1_Missense_Mutation_p.R238C	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1349					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						CGTAACCAGCGCCTACTAGTC	0.443													58	136					0	0	1	0	0	
FRYL	285527	broad.mit.edu	37	4	48577170	48577170	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:48577170A>G	uc003gyh.1	-	25	3415	c.2810T>C	c.(2809-2811)GTT>GCT	p.V937A	FRYL_uc003gyk.2_Missense_Mutation_p.V937A	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	937					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						AAGACCTAGAACAAGGGATTC	0.403													30	80					0	0	1	0	0	
FRYL	285527	broad.mit.edu	37	4	48583531	48583531	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:48583531A>G	uc003gyh.1	-	21	2683	c.2078T>C	c.(2077-2079)GTC>GCC	p.V693A	FRYL_uc003gyk.2_Missense_Mutation_p.V693A	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	693					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						ACAGAGAATGACAAGCGCAAA	0.463													24	36					0	0	1	0	0	
FRYL	285527	broad.mit.edu	37	4	48611819	48611819	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:48611819C>T	uc003gyh.1	-	8	1038	c.433G>A	c.(433-435)GAT>AAT	p.D145N	FRYL_uc003gyk.2_Missense_Mutation_p.D145N	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	145					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						ACTAAGGGATCGGGTACAGGA	0.289													9	26					0	0	1	0	0	
LRRC66	339977	broad.mit.edu	37	4	52860895	52860895	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:52860895T>C	uc003gzi.2	-	4	2306	c.2293A>G	c.(2293-2295)AAA>GAA	p.K765E		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	765						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TTCTTGCATTTCCCTGGAATT	0.468													25	67					0	0	1	0	0	
SPATA18	132671	broad.mit.edu	37	4	52946066	52946066	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:52946066G>A	uc003gzl.2	+	9	1614	c.1336G>A	c.(1336-1338)GAA>AAA	p.E446K	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.E414K|SPATA18_uc003gzk.1_Missense_Mutation_p.E446K	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	446					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			AGCAGATGGAGAAGTTTTTAA	0.398													60	128					0	0	1	0	0	
LNX1	84708	broad.mit.edu	37	4	54343119	54343119	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:54343119C>T	uc003hag.3	-	9	1949	c.1693G>A	c.(1693-1695)GAA>AAA	p.E565K	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.E469K|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	565	PDZ 3.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			TCTGTCAGTTCGACCCCATCC	0.468													45	130					0	0	1	0	0	
CHIC2	26511	broad.mit.edu	37	4	54880282	54880282	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:54880282C>T	uc003haj.1	-	4	656	c.335G>A	c.(334-336)CGA>CAA	p.R112Q	PDGFRA_uc003haa.2_Intron	NM_012110	NP_036242	Q9UKJ5	CHIC2_HUMAN	cysteine-rich hydrophobic domain 2	112		Breakpoint for translocation to form CHIC2-ETV6 in AML.				plasma membrane	protein binding			central_nervous_system(1)	1	all_cancers(7;0.0193)|all_neural(26;0.0209)|Lung NSC(11;0.0281)|Glioma(25;0.08)		LUSC - Lung squamous cell carcinoma(32;0.00216)			AATCGATCTTCGTGTCTGGAA	0.403			T	ETV6	AML								16	34					0	0	1	0	0	
PDGFRA	5156	broad.mit.edu	37	4	55131147	55131147	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:55131147G>A	uc003han.3	+	5	1021	c.690G>A	c.(688-690)ACG>ACA	p.T230T	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_3'UTR|PDGFRA_uc010igq.1_Silent_p.T124T|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	230	Ig-like C2-type 3.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	CAGGGGAAACGATTGTGGTCA	0.403			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			44	97					0	0	1	0	0	
PDGFRA	5156	broad.mit.edu	37	4	55138668	55138668	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:55138668A>G	uc003han.3	+	9	1676	c.1345A>G	c.(1345-1347)ATA>GTA	p.I449V	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.I343V|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	449	Ig-like C2-type 5.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TGAGTGGATGATATGCAAAGA	0.433			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			29	66					0	0	1	0	0	
PDGFRA	5156	broad.mit.edu	37	4	55139855	55139855	+	Missense_Mutation	SNP	C	A	A	rs142980928		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:55139855C>A	uc003han.3	+	10	1847	c.1516C>A	c.(1516-1518)CTC>ATC	p.L506I	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.L400I|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	506	Ig-like C2-type 5.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GGCTAAGAATCTCCTTGGAGC	0.592			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			23	43					2.39556e-15	2.72789e-15	1	1	0	
KIT	3815	broad.mit.edu	37	4	55561801	55561801	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:55561801T>C	uc010igr.2	+	2	278	c.191T>C	c.(190-192)GTC>GCC	p.V64A	KIT_uc010igs.2_Missense_Mutation_p.V64A	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	64	Extracellular (Potential).|Ig-like C2-type 1.				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CCGGGCTTTGTCAAATGGACT	0.493		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				21	56					0	0	1	0	0	
KIT	3815	broad.mit.edu	37	4	55575630	55575630	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:55575630G>A	uc010igr.2	+	7	1243	c.1156G>A	c.(1156-1158)GAA>AAA	p.E386K	KIT_uc010igs.2_Missense_Mutation_p.E386K	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	386	Ig-like C2-type 4.|Extracellular (Potential).				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	AAAAGGCACCGAAGGAGGCAC	0.403		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				33	65					0	0	1	0	0	
NMU	10874	broad.mit.edu	37	4	56466696	56466696	+	Nonsense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:56466696A>C	uc003hbc.2	-	8	588	c.482T>G	c.(481-483)TTA>TGA	p.L161*	NMU_uc003hbd.1_RNA|NMU_uc010igv.1_RNA|NMU_uc010igw.1_Nonsense_Mutation_p.L76*|NMU_uc010igx.1_RNA	NM_006681	NP_006672	P48645	NMU_HUMAN	neuromedin U precursor	161					neuropeptide signaling pathway	extracellular region					0	Lung NSC(11;0.00256)|all_epithelial(27;0.075)|Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.103)	LUSC - Lung squamous cell carcinoma(4;6.72e-08)|Lung(4;6.22e-07)|Epithelial(7;0.00559)	LUSC - Lung squamous cell carcinoma(721;0.0115)		TACCCTGAATAAAAAATATCC	0.289													25	44					0	0	1	0	0	
NMU	10874	broad.mit.edu	37	4	56473499	56473499	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:56473499G>A	uc003hbc.2	-	6	432	c.326C>T	c.(325-327)TCG>TTG	p.S109L	NMU_uc003hbd.1_RNA|NMU_uc010igv.1_Intron|NMU_uc010igw.1_Missense_Mutation_p.S24L|NMU_uc010igx.1_Intron	NM_006681	NP_006672	P48645	NMU_HUMAN	neuromedin U precursor	109					neuropeptide signaling pathway	extracellular region					0	Lung NSC(11;0.00256)|all_epithelial(27;0.075)|Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.103)	LUSC - Lung squamous cell carcinoma(4;6.72e-08)|Lung(4;6.22e-07)|Epithelial(7;0.00559)	LUSC - Lung squamous cell carcinoma(721;0.0115)		CTGTGTCTTCGAATAATGAAA	0.269													25	50					0	0	1	0	0	
EXOC1	55763	broad.mit.edu	37	4	56736848	56736848	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:56736848A>G	uc003hbe.1	+	6	766	c.608A>G	c.(607-609)AAC>AGC	p.N203S	EXOC1_uc003hbf.1_Missense_Mutation_p.N203S|EXOC1_uc003hbg.1_Missense_Mutation_p.N203S	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	203					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					TTGTAGGCTAACATCCAGTCA	0.289													25	53					0	0	1	0	0	
CEP135	9662	broad.mit.edu	37	4	56835228	56835228	+	Splice_Site	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:56835228G>A	uc003hbi.2	+	9	1279	c.1045_splice	c.e9-1	p.K349_splice	CEP135_uc003hbj.2_Splice_Site_p.K55_splice	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4						centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					TTTATTCCTAGAAAGAGATTA	0.328													7	42					0	0	1	0	0	
CEP135	9662	broad.mit.edu	37	4	56865579	56865579	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:56865579G>T	uc003hbi.2	+	16	2355	c.2121G>T	c.(2119-2121)AAG>AAT	p.K707N	CEP135_uc003hbj.2_Missense_Mutation_p.K413N	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	707	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					TGGAGGAAAAGATAGGTAAAT	0.343													23	43					1.28384e-07	1.34871e-07	1	1	0	
AASDH	132949	broad.mit.edu	37	4	57204655	57204655	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:57204655A>G	uc003hbn.2	-	15	3363	c.3210T>C	c.(3208-3210)TCT>TCC	p.S1070S	AASDH_uc010ihb.2_Silent_p.S585S|AASDH_uc011caa.1_3'UTR|AASDH_uc003hbo.2_Silent_p.S970S|AASDH_uc011cab.1_Silent_p.S585S|AASDH_uc010ihc.2_3'UTR	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	1070					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				GGACCACAGGAGAAGAGAAGA	0.403													15	60					0	0	1	0	0	
AASDH	132949	broad.mit.edu	37	4	57220879	57220879	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:57220879A>G	uc003hbn.2	-	7	1355	c.1202T>C	c.(1201-1203)GTA>GCA	p.V401A	AASDH_uc010ihb.2_5'UTR|AASDH_uc011caa.1_Missense_Mutation_p.V248A|AASDH_uc003hbo.2_Missense_Mutation_p.V301A|AASDH_uc011cab.1_Intron|AASDH_uc010ihc.2_Missense_Mutation_p.V401A|AASDH_uc003hbp.2_Missense_Mutation_p.V401A	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	401					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				ACCTAAAAATACTTGGCCACT	0.333													34	90					0	0	1	0	0	
PPAT	5471	broad.mit.edu	37	4	57267619	57267619	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:57267619T>C	uc003hbr.2	-	7	965	c.763A>G	c.(763-765)ATT>GTT	p.I255V		NM_002703	NP_002694	Q06203	PUR1_HUMAN	phosphoribosyl pyrophosphate amidotransferase	255	Glutamine amidotransferase type-2.				glutamine metabolic process|nucleoside metabolic process|purine base biosynthetic process|purine ribonucleoside monophosphate biosynthetic process	cytosol	4 iron, 4 sulfur cluster binding|amidophosphoribosyltransferase activity|metal ion binding				0	Glioma(25;0.08)|all_neural(26;0.101)				L-Glutamine(DB00130)|Thioguanine(DB00352)	ATTTCCACAATTTCTCCAGGC	0.323													12	24					0	0	1	0	0	
REST	5978	broad.mit.edu	37	4	57777156	57777156	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:57777156G>A	uc003hch.2	+	2	699	c.352G>A	c.(352-354)GTC>ATC	p.V118I	REST_uc003hci.2_Missense_Mutation_p.V118I|REST_uc003hcj.1_Missense_Mutation_p.V118I|REST_uc010ihf.2_5'UTR	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	118	Interaction with SIN3A.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					GGAACTCAGCGTCGTAGAACC	0.448													30	60					0	0	1	0	0	
REST	5978	broad.mit.edu	37	4	57796369	57796369	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:57796369G>A	uc003hch.2	+	4	1692	c.1345G>A	c.(1345-1347)GAA>AAA	p.E449K	REST_uc003hci.2_Missense_Mutation_p.E449K|REST_uc010ihf.2_Missense_Mutation_p.E123K	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	449	Lys-rich.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					AACAGAAATAGAACAAACAAA	0.328													19	47					0	0	1	0	0	
REST	5978	broad.mit.edu	37	4	57797984	57797984	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:57797984A>G	uc003hch.2	+	4	3307	c.2960A>G	c.(2959-2961)AAA>AGA	p.K987R	REST_uc003hci.2_Missense_Mutation_p.K987R|REST_uc010ihf.2_Missense_Mutation_p.K661R	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	987					cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					GCAGTGTCCAAAACTGCACTG	0.448													28	52					0	0	1	0	0	
C4orf14	84273	broad.mit.edu	37	4	57834643	57834643	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:57834643A>C	uc003hck.2	-	4	1629	c.1554T>G	c.(1552-1554)GTT>GTG	p.V518V		NM_032313	NP_115689	Q8NC60	CD014_HUMAN	hypothetical protein LOC84273	518							GTP binding			ovary(1)|breast(1)	2	Glioma(25;0.08)|all_neural(26;0.181)					GTGTTGGCAAAACAATATTTA	0.318													22	44					0	0	1	0	0	
POLR2B	5431	broad.mit.edu	37	4	57857005	57857005	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:57857005G>A	uc003hcl.1	+	3	227	c.184G>A	c.(184-186)GCT>ACT	p.A62T	POLR2B_uc011cae.1_Missense_Mutation_p.A55T|POLR2B_uc011caf.1_Intron	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	62					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					TGTGGAAGACGCTCCTCCTAT	0.413													24	63					0	0	1	0	0	
POLR2B	5431	broad.mit.edu	37	4	57889730	57889730	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:57889730A>C	uc003hcl.1	+	19	2793	c.2750A>C	c.(2749-2751)AAA>ACA	p.K917T	POLR2B_uc011cae.1_Missense_Mutation_p.K910T|POLR2B_uc011caf.1_Missense_Mutation_p.K842T|POLR2B_uc003hcm.1_Missense_Mutation_p.K410T	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	917					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					GAAGGATATAAATTTTGTAAA	0.343													53	90					0	0	1	0	0	
EPHA5	2044	broad.mit.edu	37	4	66230858	66230858	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:66230858C>A	uc003hcy.2	-	12	2306	c.2113G>T	c.(2113-2115)GCT>TCT	p.A705S	EPHA5_uc003hcx.2_Missense_Mutation_p.A637S|EPHA5_uc003hcz.2_Missense_Mutation_p.A683S|EPHA5_uc011cah.1_Missense_Mutation_p.A706S|EPHA5_uc011cai.1_Missense_Mutation_p.A684S|EPHA5_uc003hda.2_Missense_Mutation_p.A706S	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	705	Cytoplasmic (Potential).|Protein kinase.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						GTTTTGATAGCCACAGGTAAT	0.373										TSP Lung(17;0.13)			39	101					4.62619e-21	5.47655e-21	1	1	0	
EPHA5	2044	broad.mit.edu	37	4	66286258	66286258	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:66286258T>C	uc003hcy.2	-	6	1621	c.1428A>G	c.(1426-1428)AAA>AAG	p.K476K	EPHA5_uc003hcx.2_Silent_p.K407K|EPHA5_uc003hcz.2_Silent_p.K476K|EPHA5_uc011cah.1_Silent_p.K476K|EPHA5_uc011cai.1_Silent_p.K476K|EPHA5_uc003hda.2_Silent_p.K476K	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	476	Extracellular (Potential).|Fibronectin type-III 2.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						TTTTCCCTTTTTTCACATTGG	0.353										TSP Lung(17;0.13)			21	41					0	0	1	0	0	
EPHA5	2044	broad.mit.edu	37	4	66467723	66467723	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:66467723G>T	uc003hcy.2	-	3	739	c.546C>A	c.(544-546)AGC>AGA	p.S182R	EPHA5_uc003hcx.2_Missense_Mutation_p.S113R|EPHA5_uc003hcz.2_Missense_Mutation_p.S182R|EPHA5_uc011cah.1_Missense_Mutation_p.S182R|EPHA5_uc011cai.1_Missense_Mutation_p.S182R|EPHA5_uc003hda.2_Missense_Mutation_p.S182R	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	182	Extracellular (Potential).				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						GTTCTGTAAAGCTTTCATCGG	0.363										TSP Lung(17;0.13)			32	94					9.65021e-13	1.07265e-12	1	1	0	
UBA6	55236	broad.mit.edu	37	4	68497427	68497427	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:68497427A>C	uc003hdg.3	-	25	2309	c.2257T>G	c.(2257-2259)TTG>GTG	p.L753V		NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	753					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						AATACTTACAAAGGCTCATTT	0.299													12	27					0	0	1	0	0	
TMPRSS11F	389208	broad.mit.edu	37	4	68930556	68930556	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:68930556C>A	uc003hdt.1	-	8	911	c.862G>T	c.(862-864)GAA>TAA	p.E288*	LOC550112_uc003hdl.3_Intron|uc011cak.1_Intron|SYT14L_uc010ihn.2_5'Flank	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	288	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TCATTTGTTTCTCTATGGTAA	0.383													19	41					8.34094e-07	8.70543e-07	1	1	0	
TMPRSS11F	389208	broad.mit.edu	37	4	68930577	68930577	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:68930577G>A	uc003hdt.1	-	8	890	c.841C>T	c.(841-843)CTT>TTT	p.L281F	LOC550112_uc003hdl.3_Intron|uc011cak.1_Intron|SYT14L_uc010ihn.2_5'Flank	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	281	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TTCTCATGAAGAATAATTTTC	0.358													12	39					0	0	1	0	0	
YTHDC1	91746	broad.mit.edu	37	4	69198539	69198539	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:69198539A>G	uc003hdx.2	-	6	1353	c.1000T>C	c.(1000-1002)TCA>CCA	p.S334P	YTHDC1_uc003hdy.2_Intron	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	334										upper_aerodigestive_tract(1)|ovary(1)	2						ACGGAAGATGATAATTTCTCA	0.323													19	35					0	0	1	0	0	
YTHDC1	91746	broad.mit.edu	37	4	69203598	69203598	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:69203598G>A	uc003hdx.2	-	3	504	c.151C>T	c.(151-153)CGA>TGA	p.R51*	YTHDC1_uc003hdy.2_Nonsense_Mutation_p.R51*	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	51										upper_aerodigestive_tract(1)|ovary(1)	2						GATTCCATTCGATCACTTTTT	0.303													20	40					0	0	1	0	0	
UGT2B15	7366	broad.mit.edu	37	4	69513092	69513092	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:69513092C>A	uc011cal.1	-	6	1361	c.1323G>T	c.(1321-1323)GAG>GAT	p.E441D		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	441					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TCATGACATTCTCTTTATAGC	0.363													36	91					6.50621e-10	7.02873e-10	1	1	0	
UGT2B10	7365	broad.mit.edu	37	4	69884051	69884051	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:69884051C>T	uc011cao.1	-	5	798	c.662G>A	c.(661-663)CGA>CAA	p.R221Q	UGT2B10_uc011can.1_Missense_Mutation_p.R137Q			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	258					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CCAGGAGTTTCGCATAAGCCA	0.383													60	120					0	0	1	0	0	
UGT2B10	7365	broad.mit.edu	37	4	69885730	69885730	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:69885730T>G	uc011cao.1	-	4	395	c.259A>C	c.(259-261)AAC>CAC	p.N87H	UGT2B10_uc011can.1_Missense_Mutation_p.N87H			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	124					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TTACAGAAGTTTCTAATTATG	0.308													15	32					0	0	1	0	0	
UGT2B7	7364	broad.mit.edu	37	4	69962911	69962911	+	Missense_Mutation	SNP	G	A	A	rs146308452	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:69962911G>A	uc003heg.3	+	1	719	c.673G>A	c.(673-675)GAA>AAA	p.E225K	UGT2B7_uc010ihq.2_Missense_Mutation_p.E225K	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	225					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CTTTTGGTTCGAAATATTTGA	0.318													19	69					0	0	1	0	0	
C4orf7	260436	broad.mit.edu	37	4	71096917	71096917	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:71096917G>T	uc003hfd.2	+	2	91	c.6G>T	c.(4-6)AAG>AAT	p.K2N		NM_152997	NP_694542	Q8NFU4	FDSCP_HUMAN	chromosome 4 open reading frame 7 precursor	2						extracellular region				central_nervous_system(1)	1						TGCAGATGAAGAAAGTTCTCC	0.318													34	90					4.92203e-23	5.88717e-23	1	1	0	
C4orf35	85438	broad.mit.edu	37	4	71201477	71201477	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:71201477G>A	uc003hff.2	+	1	807	c.721G>A	c.(721-723)GAA>AAA	p.E241K		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	241						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				GAAAATAACCGAAATTGACCT	0.423													27	59					0	0	1	0	0	
PROL1	58503	broad.mit.edu	37	4	71275761	71275761	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:71275761T>G	uc003hfi.2	+	3	890	c.716T>G	c.(715-717)TTT>TGT	p.F239C		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	239					regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				TTTAAAAGTTTTTGGCAAAAA	0.368													36	33					0	0	1	0	0	
MUC7	4589	broad.mit.edu	37	4	71346516	71346516	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:71346516T>G	uc011cat.1	+	4	343	c.55T>G	c.(55-57)TTC>GTC	p.F19V	MUC7_uc011cau.1_Missense_Mutation_p.F19V|MUC7_uc003hfj.2_Missense_Mutation_p.F19V	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	19						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ttttctgcagTTCAGTGAAGG	0.219													37	62					0	0	1	0	0	
MUC7	4589	broad.mit.edu	37	4	71347004	71347004	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:71347004T>G	uc011cat.1	+	4	831	c.543T>G	c.(541-543)TCT>TCG	p.S181S	MUC7_uc011cau.1_Silent_p.S181S|MUC7_uc003hfj.2_Silent_p.S181S|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	181	1.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			CTCCACCATCTTCCTCAGCTC	0.572													78	142					0	0	1	0	0	
AMTN	401138	broad.mit.edu	37	4	71389592	71389592	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:71389592C>A	uc003hfk.1	+	4	235	c.146C>A	c.(145-147)CCT>CAT	p.P49H	AMTN_uc010ihy.1_Missense_Mutation_p.P48H	NM_212557	NP_997722	Q6UX39	AMTN_HUMAN	amelotin precursor	49					biomineral tissue development|cell adhesion|odontogenesis of dentine-containing tooth	basal lamina|cell-cell junction				large_intestine(1)|central_nervous_system(1)	2			Lung(101;0.235)			CAGGTCTTTCCTTCTTTAAGT	0.408													49	106					2.29192e-23	2.74373e-23	1	1	0	
ENAM	10117	broad.mit.edu	37	4	71497411	71497411	+	Missense_Mutation	SNP	C	A	A	rs141942524		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:71497411C>A	uc011caw.1	+	3	360	c.79C>A	c.(79-81)CTC>ATC	p.L27I		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	27					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AATGAAGATTCTCCTGGTCTT	0.348													75	165					2.43516e-34	3.00028e-34	1	1	0	
SLC4A4	8671	broad.mit.edu	37	4	72423482	72423482	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:72423482C>A	uc003hfy.2	+	22	2934	c.2817C>A	c.(2815-2817)TTC>TTA	p.F939L	SLC4A4_uc010iic.2_Missense_Mutation_p.F939L|SLC4A4_uc010iib.2_Missense_Mutation_p.F855L|SLC4A4_uc003hfz.2_Missense_Mutation_p.F939L|SLC4A4_uc003hgc.3_Missense_Mutation_p.F895L|SLC4A4_uc010iid.2_Missense_Mutation_p.F143L	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	939	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			AGCCTGACTTCATCTACCTGC	0.517													21	44					1.01871e-10	1.10886e-10	1	1	0	
SLC4A4	8671	broad.mit.edu	37	4	72429587	72429587	+	Silent	SNP	C	T	T	rs139191615		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:72429587C>T	uc003hfy.2	+	24	3294	c.3177C>T	c.(3175-3177)AGC>AGT	p.S1059S	SLC4A4_uc010iic.2_Intron|SLC4A4_uc010iib.2_Silent_p.S975S|SLC4A4_uc003hfz.2_Silent_p.S1059S|SLC4A4_uc003hgc.3_Silent_p.S1015S|SLC4A4_uc010iid.2_Silent_p.S263S	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	1059	Required for basolateral targeting.|Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			CTTTCCTAAGCGATAGCAAAC	0.393													43	65					0	0	1	0	0	
GC	2638	broad.mit.edu	37	4	72622523	72622523	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:72622523A>C	uc003hge.2	-	8	1093	c.940T>G	c.(940-942)TTC>GTC	p.F314V	GC_uc003hgd.2_Missense_Mutation_p.F192V|GC_uc010iie.2_Missense_Mutation_p.F314V|GC_uc010iif.2_Missense_Mutation_p.F333V	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	314	Albumin 2.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	GCTGGCATGAAGTAAGTGCAC	0.418													28	50					0	0	1	0	0	
NPFFR2	10886	broad.mit.edu	37	4	73013275	73013275	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:73013275A>G	uc003hgg.2	+	4	1413	c.1315A>G	c.(1315-1317)AAC>GAC	p.N439D	NPFFR2_uc010iig.1_Missense_Mutation_p.N221D|NPFFR2_uc003hgi.2_Missense_Mutation_p.N340D|NPFFR2_uc003hgh.2_Missense_Mutation_p.N337D|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	439	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			TGGTTTCTTCAACGAGAATTT	0.453													32	70					0	0	1	0	0	
COX18	285521	broad.mit.edu	37	4	73927616	73927616	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:73927616C>A	uc003hgm.1	-	5	848	c.742G>T	c.(742-744)GGA>TGA	p.G248*	COX18_uc003hgn.1_Nonsense_Mutation_p.G97*|COX18_uc011cbc.1_Nonsense_Mutation_p.G249*|COX18_uc010iih.1_Nonsense_Mutation_p.G248*	NM_173827	NP_776188	Q8N8Q8	COX18_HUMAN	mitochondrial COX18 precursor	248					protein insertion into mitochondrial membrane|respiratory chain complex IV assembly	integral to mitochondrial inner membrane	protein transporter activity				0	Breast(15;0.00096)		Epithelial(6;1.26e-06)|OV - Ovarian serous cystadenocarcinoma(6;9.45e-06)|all cancers(17;2.05e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CGAGACATTCCAATTTTTTGT	0.363													14	18					0.0202918	0.020439	1	1	0	
ANKRD17	26057	broad.mit.edu	37	4	73956680	73956680	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:73956680G>A	uc003hgp.2	-	29	6782	c.6665C>T	c.(6664-6666)TCG>TTG	p.S2222L	ANKRD17_uc003hgo.2_Missense_Mutation_p.S2109L|ANKRD17_uc003hgq.2_Missense_Mutation_p.S1971L|ANKRD17_uc003hgr.2_Missense_Mutation_p.S2221L	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2222					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ACTTAAGGTCGAAGGTAGCTG	0.443													59	159					0	0	1	0	0	
ANKRD17	26057	broad.mit.edu	37	4	73979536	73979536	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:73979536A>C	uc003hgp.2	-	24	4491	c.4374T>G	c.(4372-4374)ATT>ATG	p.I1458M	ANKRD17_uc003hgo.2_Missense_Mutation_p.I1345M|ANKRD17_uc003hgq.2_Missense_Mutation_p.I1207M|ANKRD17_uc003hgr.2_Missense_Mutation_p.I1457M|ANKRD17_uc011cbd.1_Missense_Mutation_p.I1023M	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	1458	Potential.				interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CCTCTAACAAAATGCTGGCGT	0.303													57	135					0	0	1	0	0	
ALB	213	broad.mit.edu	37	4	74283258	74283258	+	Missense_Mutation	SNP	C	T	T	rs78575701		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:74283258C>T	uc003hgs.3	+	11	1373	c.1300C>T	c.(1300-1302)CGT>TGT	p.R434C	ALB_uc003hgw.3_Missense_Mutation_p.R242C|ALB_uc011cbe.1_Missense_Mutation_p.R113C|ALB_uc003hgt.3_Missense_Mutation_p.R434C|ALB_uc010iii.2_Missense_Mutation_p.R319C|ALB_uc003hgu.3_Missense_Mutation_p.R284C|ALB_uc003hgv.3_Missense_Mutation_p.R113C|ALB_uc011cbf.1_Missense_Mutation_p.R324C|ALB_uc010iij.2_Intron|ALB_uc003hgx.3_Missense_Mutation_p.R113C	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	434	Albumin 3.		R -> C (in Liprizzi).		bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	GCTATTAGTTCGTTACACCAA	0.403													28	51					0	0	1	0	0	
ALB	213	broad.mit.edu	37	4	74285345	74285345	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:74285345T>G	uc003hgs.3	+	13	1847	c.1774T>G	c.(1774-1776)TTT>GTT	p.F592V	ALB_uc003hgw.3_Missense_Mutation_p.F400V|ALB_uc011cbe.1_Missense_Mutation_p.F271V|ALB_uc003hgt.3_Missense_Mutation_p.F592V|ALB_uc010iii.2_Missense_Mutation_p.F477V|ALB_uc003hgu.3_Missense_Mutation_p.F442V|ALB_uc003hgv.3_Missense_Mutation_p.F271V|ALB_uc011cbf.1_Missense_Mutation_p.F482V|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_Missense_Mutation_p.F271V	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	592	Albumin 3.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	GGAGACCTGCTTTGCCGAGGA	0.418													44	89					0	0	1	0	0	
RASSF6	166824	broad.mit.edu	37	4	74447980	74447980	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:74447980A>G	uc003hhd.1	-	7	814	c.691T>C	c.(691-693)TCA>CCA	p.S231P	RASSF6_uc003hhc.1_Missense_Mutation_p.S199P|RASSF6_uc010iik.1_Intron|RASSF6_uc010iil.1_Missense_Mutation_p.S187P	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	231	Ras-associating.				apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			TTAGTTTCTGATTCAAAGGCT	0.289													10	19					0	0	1	0	0	
RASSF6	166824	broad.mit.edu	37	4	74477513	74477513	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:74477513C>A	uc003hhd.1	-	2	219	c.96G>T	c.(94-96)AAG>AAT	p.K32N	RASSF6_uc003hhc.1_5'UTR|RASSF6_uc010iik.1_5'UTR|RASSF6_uc010iil.1_Intron	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	32					apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			TCATAGTCATCTTTTCCTCCT	0.333													42	77					4.67007e-22	5.55902e-22	1	1	0	
RCHY1	25898	broad.mit.edu	37	4	76419368	76419368	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:76419368A>C	uc003hik.2	-	4	480	c.348T>G	c.(346-348)TTT>TTG	p.F116L	RCHY1_uc010iio.2_Missense_Mutation_p.F12L|RCHY1_uc003hij.2_Missense_Mutation_p.F116L|RCHY1_uc003hil.2_Missense_Mutation_p.F116L|RCHY1_uc010iip.2_Missense_Mutation_p.F116L|RCHY1_uc010iiq.2_RNA|RCHY1_uc010iir.2_Missense_Mutation_p.F76L	NM_015436	NP_056251	Q96PM5	ZN363_HUMAN	ring finger and CHY zinc finger domain	116	CTCHY-type.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein autoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nuclear speck|ubiquitin ligase complex	electron carrier activity|p53 binding|protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			pancreas(1)	1			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			AACAATGGAAAAAATCTTCCT	0.269													10	24					0	0	1	0	0	
CDKL2	8999	broad.mit.edu	37	4	76521479	76521479	+	Silent	SNP	C	T	T	rs146029707		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:76521479C>T	uc003hiq.2	-	10	1893	c.1368G>A	c.(1366-1368)CCG>CCA	p.P456P	CDKL2_uc011cbp.1_Silent_p.P456P	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	456					sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			AATGTCTGTTCGGTTTAACAA	0.343													23	56					0	0	1	0	0	
G3BP2	9908	broad.mit.edu	37	4	76570777	76570777	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:76570777C>T	uc003hir.2	-	12	1451	c.1286G>A	c.(1285-1287)CGC>CAC	p.R429H	G3BP2_uc003his.2_Missense_Mutation_p.R429H|G3BP2_uc003hit.2_Missense_Mutation_p.R396H	NM_012297	NP_036429	Q9UN86	G3BP2_HUMAN	Ras-GTPase activating protein SH3 domain-binding	429	Gly-rich.				cytoplasmic sequestering of NF-kappaB|mRNA transport|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	GTPase activator activity|nucleotide binding|receptor signaling complex scaffold activity|RNA binding			breast(2)|central_nervous_system(1)	3			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TCGATCATTGCGCCTAATATC	0.522													31	88					0	0	1	0	0	
USO1	8615	broad.mit.edu	37	4	76715020	76715020	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:76715020C>A	uc003hiu.2	+	12	1593	c.1418C>A	c.(1417-1419)TCT>TAT	p.S473Y	USO1_uc003hiv.2_Missense_Mutation_p.S308Y|USO1_uc003hiw.2_Missense_Mutation_p.S308Y	NM_003715	NP_003706	O60763	USO1_HUMAN	USO1 homolog, vesicle docking protein	473	Globular head.|ARM 9.				intracellular protein transport|vesicle fusion with Golgi apparatus	cytosol|Golgi membrane	protein binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			CCTCCAGTTTCTTTACTTCAA	0.423													21	57					1.1804e-14	1.33524e-14	1	1	0	
PPEF2	5470	broad.mit.edu	37	4	76805796	76805796	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:76805796C>A	uc003hix.2	-	8	1054	c.697G>T	c.(697-699)GAG>TAG	p.E233*	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Nonsense_Mutation_p.E233*	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	233	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AGATGGAACTCTTTGGGGTAA	0.403													76	137					7.45626e-27	9.03977e-27	1	1	0	
PPEF2	5470	broad.mit.edu	37	4	76811283	76811283	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:76811283C>T	uc003hix.2	-	5	601	c.244G>A	c.(244-246)GAC>AAC	p.D82N	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Missense_Mutation_p.D82N	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	82					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GTCAGGAAGTCCCCTAGTCCA	0.418													27	60					0	0	1	0	0	
CCDC158	339965	broad.mit.edu	37	4	77252554	77252554	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:77252554C>T	uc003hkb.3	-	20	3026	c.2873G>A	c.(2872-2874)AGC>AAC	p.S958N		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	958	Ser-rich.									skin(3)|ovary(2)|pancreas(1)	6						CGAGTTGTTGCTTCTGTTGGT	0.363													38	93					0	0	1	0	0	
SHROOM3	57619	broad.mit.edu	37	4	77700059	77700059	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:77700059G>A	uc011cbx.1	+	11	6673	c.5720G>A	c.(5719-5721)GGC>GAC	p.G1907D	SHROOM3_uc003hkg.2_Missense_Mutation_p.G1685D	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1907	ASD2.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GTAGTGCTGGGCATCTTGGCC	0.542													23	36					0	0	1	0	0	
FRAS1	80144	broad.mit.edu	37	4	79236761	79236761	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:79236761C>T	uc003hlb.2	+	16	2132	c.1692C>T	c.(1690-1692)TCC>TCT	p.S564S	FRAS1_uc003hkw.2_Silent_p.S564S|FRAS1_uc003hky.1_Silent_p.S268S|FRAS1_uc003hkz.2_Silent_p.S268S|FRAS1_uc003hla.1_Silent_p.S75S	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	564	FU 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GTGACCAATCCTGTGACAGTT	0.483													37	67					0	0	1	0	0	
FRAS1	80144	broad.mit.edu	37	4	79400712	79400712	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:79400712C>T	uc003hlb.2	+	56	8723	c.8283C>T	c.(8281-8283)AGC>AGT	p.S2761S		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2756	Extracellular (Potential).|Calx-beta 2.				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TTGATGACAGCGAGTATGAAG	0.507													21	55					0	0	1	0	0	
FRAS1	80144	broad.mit.edu	37	4	79458157	79458157	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:79458157C>A	uc003hlb.2	+	72	11541	c.11101C>A	c.(11101-11103)CTT>ATT	p.L3701I		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3696	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						AGGTCAAATCCTTTATGGCCG	0.373													26	71					1.68575e-08	1.7923e-08	1	1	0	
PAQR3	152559	broad.mit.edu	37	4	79845039	79845039	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:79845039A>C	uc003hlp.1	-	5	969	c.765T>G	c.(763-765)ATT>ATG	p.I255M	PAQR3_uc003hlm.2_RNA|PAQR3_uc003hln.2_RNA|PAQR3_uc003hlq.1_Missense_Mutation_p.I137M	NM_001040202	NP_001035292	Q6TCH7	PAQR3_HUMAN	progestin and adipoQ receptor family member III	255	Helical; (Potential).					Golgi membrane|integral to membrane	receptor activity				0						GGACTTTGGAAATGTAGAATA	0.378													17	42					0	0	1	0	0	
GK2	2712	broad.mit.edu	37	4	80328097	80328097	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:80328097G>A	uc003hlu.2	-	1	1276	c.1258C>T	c.(1258-1260)CGT>TGT	p.R420C		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	420					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						TGCAAATGACGAAGTGGAATT	0.393													41	80					0	0	1	0	0	
ANTXR2	118429	broad.mit.edu	37	4	80977160	80977160	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:80977160T>G	uc003hlz.3	-	4	1067	c.304A>C	c.(304-306)ATC>CTC	p.I102L	ANTXR2_uc003hly.3_Missense_Mutation_p.I102L|ANTXR2_uc003hlx.1_RNA|ANTXR2_uc010ijn.2_Missense_Mutation_p.I102L	NM_001145794	NP_001139266	P58335	ANTR2_HUMAN	anthrax toxin receptor 2 isoform 2	102	Extracellular (Potential).|VWFA.					endoplasmic reticulum membrane|extracellular region|integral to membrane|plasma membrane	metal ion binding|protein binding|receptor activity			ovary(1)	1						CCTTTACTGATTTTGCCTCTG	0.303									Juvenile_Hyaline_Fibromatosis				8	3					0	0	1	0	0	
PRDM8	56978	broad.mit.edu	37	4	81124520	81124520	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:81124520G>A	uc010ijo.2	+	8	2743	c.1904G>A	c.(1903-1905)CGC>CAC	p.R635H	PRDM8_uc003hmb.3_Missense_Mutation_p.R635H|PRDM8_uc003hmc.3_Missense_Mutation_p.R635H	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	635	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GCCTCCTTCCGCATGACCTCC	0.478													15	15					0	0	1	0	0	
PRDM8	56978	broad.mit.edu	37	4	81124564	81124564	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:81124564A>C	uc010ijo.2	+	8	2787	c.1948A>C	c.(1948-1950)AAG>CAG	p.K650Q	PRDM8_uc003hmb.3_Missense_Mutation_p.K650Q|PRDM8_uc003hmc.3_Missense_Mutation_p.K650Q	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	650					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GCACCACAAAAAGGAGTATGC	0.597													13	17					0	0	1	0	0	
BMP3	651	broad.mit.edu	37	4	81967324	81967324	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:81967324C>A	uc003hmg.3	+	2	1069	c.749C>A	c.(748-750)TCT>TAT	p.S250Y		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	250					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						GCCGCCATTTCTGAGCCAGAA	0.473													48	81					1.06522e-23	1.27633e-23	1	1	0	
BMP3	651	broad.mit.edu	37	4	81974618	81974618	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:81974618C>A	uc003hmg.3	+	3	1667	c.1347C>A	c.(1345-1347)TTC>TTA	p.F449L		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	449					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						GTATTTTATTCTTTGATGAAA	0.418													40	117					3.61848e-18	4.2256e-18	1	1	0	
RASGEF1B	153020	broad.mit.edu	37	4	82362046	82362046	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:82362046C>T	uc003hmi.1	-	10	1190	c.1046G>A	c.(1045-1047)CGA>CAA	p.R349Q	RASGEF1B_uc003hmj.1_Missense_Mutation_p.R348Q|RASGEF1B_uc010ijq.1_Missense_Mutation_p.R307Q	NM_152545	NP_689758	Q0VAM2	RGF1B_HUMAN	RasGEF domain family, member 1B	349	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						AAGAGCTGTTCGATAATTATA	0.343													58	139					0	0	1	0	0	
TMEM150C	441027	broad.mit.edu	37	4	83425759	83425759	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:83425759A>C	uc003hmy.1	-	2	130	c.52T>G	c.(52-54)TTG>GTG	p.L18V	TMEM150C_uc011ccj.1_Missense_Mutation_p.L48V	NM_001080506	NP_001073975	B9EJG8	T150C_HUMAN	transmembrane protein 150C	18	Helical; (Potential).					integral to membrane				ovary(1)	1						GAAGTAAACAAAGTAAATACA	0.328													12	19					0	0	1	0	0	
SCD5	79966	broad.mit.edu	37	4	83602054	83602054	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:83602054G>A	uc003hna.2	-	3	695	c.375C>T	c.(373-375)TTC>TTT	p.F125F	SCD5_uc003hnb.3_Silent_p.F125F	NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	125					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				TGGACCACTCGAAGATGTCAT	0.607													41	69					0	0	1	0	0	
SEC31A	22872	broad.mit.edu	37	4	83770112	83770112	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:83770112G>A	uc003hnf.2	-	20	2511	c.2347C>T	c.(2347-2349)CGT>TGT	p.R783C	SEC31A_uc003hne.2_Missense_Mutation_p.R516C|SEC31A_uc011ccl.1_Missense_Mutation_p.R744C|SEC31A_uc003hnl.2_Missense_Mutation_p.R744C|SEC31A_uc003hng.2_Missense_Mutation_p.R783C|SEC31A_uc003hnh.2_Missense_Mutation_p.R783C|SEC31A_uc003hni.2_Missense_Mutation_p.R783C|SEC31A_uc003hnj.2_Missense_Mutation_p.R744C|SEC31A_uc011ccm.1_Missense_Mutation_p.R778C|SEC31A_uc011ccn.1_Missense_Mutation_p.R783C|SEC31A_uc003hnk.2_Missense_Mutation_p.R744C|SEC31A_uc003hnm.2_Missense_Mutation_p.R783C|SEC31A_uc003hnn.1_Missense_Mutation_p.R783C	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	783					COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				AGTCTGTCACGAAGCTGCATG	0.443													12	109					0	0	1	0	0	
SEC31A	22872	broad.mit.edu	37	4	83787987	83787987	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:83787987G>A	uc003hnf.2	-	10	1335	c.1171C>T	c.(1171-1173)CGA>TGA	p.R391*	SEC31A_uc003hne.2_Nonsense_Mutation_p.R163*|SEC31A_uc011ccl.1_Nonsense_Mutation_p.R391*|SEC31A_uc003hnl.2_Nonsense_Mutation_p.R391*|SEC31A_uc003hng.2_Nonsense_Mutation_p.R391*|SEC31A_uc003hnh.2_Nonsense_Mutation_p.R391*|SEC31A_uc003hni.2_Nonsense_Mutation_p.R391*|SEC31A_uc003hnj.2_Nonsense_Mutation_p.R391*|SEC31A_uc011ccm.1_Nonsense_Mutation_p.R386*|SEC31A_uc011ccn.1_Nonsense_Mutation_p.R391*|SEC31A_uc003hnk.2_Nonsense_Mutation_p.R391*|SEC31A_uc003hnm.2_Nonsense_Mutation_p.R391*|SEC31A_uc003hnn.1_Nonsense_Mutation_p.R391*|SEC31A_uc003hno.2_Nonsense_Mutation_p.R391*	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	391	Interaction with SEC13.				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				ACAGGCCTTCGAATCCACTTG	0.458													57	126					0	0	1	0	0	
THAP9	79725	broad.mit.edu	37	4	83840004	83840004	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:83840004A>C	uc003hnt.2	+	5	2758	c.2639A>C	c.(2638-2640)AAA>ACA	p.K880T	THAP9_uc003hns.1_Missense_Mutation_p.K736T|THAP9_uc003hnu.1_RNA|THAP9_uc003hnv.2_Missense_Mutation_p.K597T	NM_024672	NP_078948	Q9H5L6	THAP9_HUMAN	THAP domain containing 9	880							DNA binding|metal ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	5		Hepatocellular(203;0.114)				CAGGATTATAAATGTTCAAGT	0.308													51	66					0	0	1	0	0	
WDFY3	23001	broad.mit.edu	37	4	85696261	85696261	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:85696261G>T	uc003hpd.2	-	28	4957	c.4549C>A	c.(4549-4551)CTT>ATT	p.L1517I		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1517						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AATAAGGAAAGATGAAGTTCA	0.333													35	34					9.73076e-26	1.17469e-25	1	1	0	
WDFY3	23001	broad.mit.edu	37	4	85731148	85731148	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:85731148C>A	uc003hpd.2	-	14	2645	c.2237G>T	c.(2236-2238)AGA>ATA	p.R746I	WDFY3_uc003hpf.2_Missense_Mutation_p.R746I	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	746						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CTCTAAAAGTCTTTGAAATGG	0.398													52	105					1.00221e-16	1.15522e-16	1	1	0	
MAPK10	5602	broad.mit.edu	37	4	87024399	87024399	+	Splice_Site	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:87024399T>G	uc003hpq.2	-	5	434	c.367_splice	c.e5-1	p.I123_splice	MAPK10_uc010ikg.2_Splice_Site_p.I85_splice|MAPK10_uc003hpr.2_Splice_Site_p.I85_splice|MAPK10_uc003hps.2_Splice_Site_p.I123_splice|MAPK10_uc003hpt.2_Splice_Site_p.I123_splice|MAPK10_uc003hpu.2_Splice_Site_p.I123_splice|MAPK10_uc003hpv.2_Intron|MAPK10_uc010ikh.1_Intron|MAPK10_uc003hpo.2_Intron|MAPK10_uc011ccw.1_Splice_Site_p.I9_splice|MAPK10_uc003hpp.2_Intron	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2						innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		ACTAATAATCTgaaagagagt	0.269													18	40					0	0	1	0	0	
PTPN13	5783	broad.mit.edu	37	4	87622475	87622475	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:87622475A>C	uc003hpz.2	+	7	1196	c.716A>C	c.(715-717)AAA>ACA	p.K239T	PTPN13_uc003hpy.2_Missense_Mutation_p.K239T|PTPN13_uc003hqa.2_Missense_Mutation_p.K239T|PTPN13_uc003hqb.2_Missense_Mutation_p.K239T	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	239						cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GGGCTTAGTAAATCTATGGGA	0.353													13	20					0	0	1	0	0	
PTPN13	5783	broad.mit.edu	37	4	87637691	87637691	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:87637691C>T	uc003hpz.2	+	8	1684	c.1204C>T	c.(1204-1206)CGA>TGA	p.R402*	PTPN13_uc003hpy.2_Nonsense_Mutation_p.R402*|PTPN13_uc003hqa.2_Nonsense_Mutation_p.R402*|PTPN13_uc003hqb.2_Nonsense_Mutation_p.R402*	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	402						cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		AGAACCAGTTCGAAGATACAA	0.328													6	5					0	0	1	0	0	
SLC10A6	345274	broad.mit.edu	37	4	87744921	87744921	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:87744921C>T	uc003hqd.2	-	6	1202	c.1054G>A	c.(1054-1056)GCC>ACC	p.A352T		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	352	Cytoplasmic (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		GGAGTGATGGCACCTTCTTCA	0.522													20	51					0	0	1	0	0	
DSPP	1834	broad.mit.edu	37	4	88533280	88533280	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:88533280G>A	uc003hqu.2	+	3	195	c.75G>A	c.(73-75)GAG>GAA	p.E25E		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	25					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		AACCACTGGAGAGACATGTCG	0.338													15	30					0	0	1	0	0	
DSPP	1834	broad.mit.edu	37	4	88533818	88533818	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:88533818G>T	uc003hqu.2	+	4	600	c.480G>T	c.(478-480)AAG>AAT	p.K160N		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	160					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		ATACTGATAAGAATACCCAAA	0.438													20	34					8.10497e-08	8.54627e-08	1	1	0	
IBSP	3381	broad.mit.edu	37	4	88732678	88732678	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:88732678C>T	uc003hqx.3	+	7	668	c.570C>T	c.(568-570)AAC>AAT	p.N190N		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	190					biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		AAAACGGCAACGGCAGCAGCG	0.443													21	35					0	0	1	0	0	
MEPE	56955	broad.mit.edu	37	4	88767192	88767192	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:88767192C>T	uc003hqy.2	+	4	1211	c.1172C>T	c.(1171-1173)GCT>GTT	p.A391V	MEPE_uc010ikn.2_Missense_Mutation_p.A278V	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	391					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		AGTGATGCAGCTGAAAGTACC	0.413													14	52					0	0	1	0	0	
PPM1K	152926	broad.mit.edu	37	4	89198321	89198321	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:89198321G>A	uc003hrm.3	-	3	905	c.515C>T	c.(514-516)TCG>TTG	p.S172L	PPM1K_uc010ikp.1_Missense_Mutation_p.S172L|PPM1K_uc003hrn.2_Missense_Mutation_p.S172L	NM_152542	NP_689755	Q8N3J5	PPM1K_HUMAN	protein phosphatase 1K (PP2C domain containing)	172	PP2C-like.				protein dephosphorylation	mitochondrial matrix|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000192)		GGCATGACTCGAAAAGGCTTT	0.443													32	39					0	0	1	0	0	
HERC6	55008	broad.mit.edu	37	4	89311819	89311819	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:89311819C>T	uc011cdi.1	+	4	635	c.452C>T	c.(451-453)TCG>TTG	p.S151L	HERC6_uc003hrp.1_RNA|HERC6_uc011cdj.1_Missense_Mutation_p.S151L|HERC6_uc011cdk.1_RNA|HERC6_uc011cdl.1_RNA	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	151	RCC1 3.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		CAAGTGTTTTCGTGGGGAAAG	0.463													17	16					0	0	1	0	0	
HERC5	51191	broad.mit.edu	37	4	89380566	89380566	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:89380566C>A	uc003hrt.2	+	2	487	c.334C>A	c.(334-336)CTC>ATC	p.L112I		NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	112	RCC1 1.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		CATGCTGATTCTCTCATCAGA	0.338													38	87					6.45866e-13	7.18389e-13	1	1	0	
HERC5	51191	broad.mit.edu	37	4	89390312	89390312	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:89390312C>A	uc003hrt.2	+	9	1292	c.1139C>A	c.(1138-1140)TCA>TAA	p.S380*	HERC5_uc011cdm.1_Nonsense_Mutation_p.S18*	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	380					innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		TTACAGAATTCATATGTTAAT	0.373													8	29					2.52707e-12	2.79602e-12	1	1	0	
FAM13A	10144	broad.mit.edu	37	4	89658668	89658668	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:89658668C>G	uc003hse.1	-	21	2809	c.2601G>C	c.(2599-2601)CAG>CAC	p.Q867H	FAM13A_uc011cdp.1_5'UTR|FAM13A_uc003hsa.1_Intron|FAM13A_uc003hsb.1_Missense_Mutation_p.Q541H|FAM13A_uc003hsd.1_Intron|FAM13A_uc003hsc.1_Missense_Mutation_p.Q527H|FAM13A_uc011cdq.1_Missense_Mutation_p.Q513H|FAM13A_uc003hsf.1_Missense_Mutation_p.Q453H|FAM13A_uc003hsg.1_Intron	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	867					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						CGATAATTGGCTGCAGCAAAG	0.532													28	54					0	0	1	0	0	
FAM13A	10144	broad.mit.edu	37	4	89709072	89709072	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:89709072C>A	uc003hse.1	-	10	1311	c.1103G>T	c.(1102-1104)AGA>ATA	p.R368I	FAM13A_uc003hsb.1_Missense_Mutation_p.R42I|FAM13A_uc003hsd.1_Missense_Mutation_p.R42I|FAM13A_uc003hsc.1_Missense_Mutation_p.R28I|FAM13A_uc011cdq.1_Missense_Mutation_p.R14I|FAM13A_uc003hsf.1_Intron|FAM13A_uc003hsg.1_5'UTR|FAM13A_uc003hsh.1_Missense_Mutation_p.R182I|FAM13A_uc010ikr.1_5'UTR	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	368					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TCGGATGGTTCTTTCTAAGAG	0.393													20	42					1.00905e-13	1.13002e-13	1	1	0	
MMRN1	22915	broad.mit.edu	37	4	90856259	90856259	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:90856259G>A	uc003hst.2	+	6	1499	c.1428G>A	c.(1426-1428)AAG>AAA	p.K476K	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Silent_p.K218K	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	476					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		CATGTGAGAAGCCTATTAAAG	0.378													45	58					0	0	1	0	0	
MMRN1	22915	broad.mit.edu	37	4	90856603	90856603	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:90856603A>G	uc003hst.2	+	6	1843	c.1772A>G	c.(1771-1773)GAA>GGA	p.E591G	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.E333G	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	591	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		CTCAGAGGTGAATGTGAAGAC	0.348													27	54					0	0	1	0	0	
MMRN1	22915	broad.mit.edu	37	4	90856704	90856704	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:90856704C>A	uc003hst.2	+	6	1944	c.1873C>A	c.(1873-1875)CTC>ATC	p.L625I	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.L367I	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	625	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GGCTGAAGTTCTCTTTCCAAT	0.353													42	101					3.54909e-21	4.20329e-21	1	1	0	
FAM190A	401145	broad.mit.edu	37	4	91230341	91230341	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:91230341T>G	uc003hsv.3	+	2	1246	c.906T>G	c.(904-906)GCT>GCG	p.A302A	FAM190A_uc003hsu.3_Silent_p.A302A|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Silent_p.A302A	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	302										large_intestine(1)|ovary(1)	2						ATTCTGCTGCTGTTACAAAGA	0.423													66	148					0	0	1	0	0	
GRID2	2895	broad.mit.edu	37	4	94411866	94411866	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:94411866C>A	uc011cdt.1	+	12	2193	c.1935C>A	c.(1933-1935)ATC>ATA	p.I645I	GRID2_uc011cdu.1_Silent_p.I550I	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	645	Helical; (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TGATTGTTATCTCATCTTACA	0.443													45	73					3.54909e-21	4.20329e-21	1	1	0	
SMARCAD1	56916	broad.mit.edu	37	4	95191964	95191964	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:95191964G>T	uc003htc.3	+	11	1822	c.1567G>T	c.(1567-1569)GAA>TAA	p.E523*	SMARCAD1_uc003htb.3_Nonsense_Mutation_p.E523*|SMARCAD1_uc003htd.3_Nonsense_Mutation_p.E523*|SMARCAD1_uc010ila.2_Nonsense_Mutation_p.E386*|SMARCAD1_uc011cdw.1_Nonsense_Mutation_p.E93*	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	523	ATP (By similarity).|Helicase ATP-binding.				chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		TTTGGCAGATGAAATGGTAAG	0.348													27	65					2.79863e-10	3.03339e-10	1	1	0	
RAP1GDS1	5910	broad.mit.edu	37	4	99313106	99313106	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:99313106C>T	uc003htx.3	+	6	702	c.512C>T	c.(511-513)TCG>TTG	p.S171L	RAP1GDS1_uc003htu.2_Missense_Mutation_p.S171L|RAP1GDS1_uc003htw.3_Missense_Mutation_p.S172L|RAP1GDS1_uc003htv.3_Missense_Mutation_p.S172L|RAP1GDS1_uc003htz.3_Missense_Mutation_p.S122L|RAP1GDS1_uc003hty.3_Missense_Mutation_p.S123L|RAP1GDS1_uc003hua.3_Intron	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	171	ARM 2.						binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		TTTACAGATTCGCTTCAAGCT	0.343			T	NUP98	T-ALL								6	27					0	0	1	0	0	
TSPAN5	10098	broad.mit.edu	37	4	99399882	99399882	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:99399882C>T	uc003hub.2	-	5	880	c.530G>A	c.(529-531)CGA>CAA	p.R177Q	TSPAN5_uc011cdz.1_Missense_Mutation_p.R106Q	NM_005723	NP_005714	P62079	TSN5_HUMAN	transmembrane 4 superfamily member 9	177	Extracellular (Potential).					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;1.89e-07)		ACATCGCTCTCGACTTGCATT	0.468													32	63					0	0	1	0	0	
EIF4E	1977	broad.mit.edu	37	4	99808251	99808251	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:99808251G>A	uc003hue.2	-	5	1901	c.378C>T	c.(376-378)CTC>CTT	p.L126L	EIF4E_uc011cea.1_Silent_p.L146L|EIF4E_uc011ceb.1_Silent_p.L126L|EIF4E_uc011cec.1_Silent_p.L126L	NM_001968	NP_001959	P06730	IF4E_HUMAN	eukaryotic translation initiation factor 4E	126					G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|interspecies interaction between organisms|mRNA export from nucleus|nuclear-transcribed mRNA poly(A) tail shortening|positive regulation of mitotic cell cycle|regulation of translation	cytoplasmic mRNA processing body|cytosol|eukaryotic translation initiation factor 4F complex|mRNA cap binding complex|RNA-induced silencing complex	protein binding|RNA cap binding|translation initiation factor activity			lung(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)|LUSC - Lung squamous cell carcinoma(721;0.00227)		AAAAGCGATCGAGGTCACTTC	0.383													84	144					0	0	1	0	0	
ADH5	128	broad.mit.edu	37	4	99993587	99993587	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:99993587C>T	uc003hui.2	-	9	1186	c.1106G>A	c.(1105-1107)CGA>CAA	p.R369Q	ADH5_uc003huj.2_3'UTR	NM_000671	NP_000662	P11766	ADHX_HUMAN	class III alcohol dehydrogenase, chi subunit	369					ethanol oxidation|response to redox state		alcohol dehydrogenase (NAD) activity|electron carrier activity|fatty acid binding|formaldehyde dehydrogenase activity|S-(hydroxymethyl)glutathione dehydrogenase activity|zinc ion binding	p.R369*(1)		ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;2.5e-07)	NADH(DB00157)	TACAACAGTTCGAATGCTGTA	0.383													10	23					0	0	1	0	0	
ADH6	130	broad.mit.edu	37	4	100126121	100126121	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:100126121T>G	uc003hup.3	-	8	1158	c.1064A>C	c.(1063-1065)AAA>ACA	p.K355T	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.K355T|ADH6_uc011cef.1_Missense_Mutation_p.K146T|ADH6_uc010ile.2_3'UTR	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	355					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	TTCATTGATTTTATCAAGATT	0.378													21	61					0	0	1	0	0	
ADH6	130	broad.mit.edu	37	4	100131414	100131414	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:100131414A>C	uc003hup.3	-	5	486	c.392T>G	c.(391-393)TTT>TGT	p.F131C	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.F131C|ADH6_uc011cef.1_Intron|ADH6_uc010ile.2_Missense_Mutation_p.F131C	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	131					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	CTTGCAGGTAAACCTGCTGGT	0.353													18	50					0	0	1	0	0	
ADH1A	124	broad.mit.edu	37	4	100201343	100201343	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:100201343G>A	uc003hur.1	-	7	993	c.922C>T	c.(922-924)CTG>TTG	p.L308L	uc003hum.1_Intron|ADH1A_uc011ceg.1_Silent_p.L308L	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	308					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	GTCAGTAGCAGCATAGGGTTC	0.468													92	190					0	0	1	0	0	
MTTP	4547	broad.mit.edu	37	4	100521856	100521856	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:100521856C>A	uc003hvc.3	+	10	1458	c.1202C>A	c.(1201-1203)TCT>TAT	p.S401Y	MTTP_uc011cej.1_Missense_Mutation_p.S428Y	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	401	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	GGATTTGCTTCTCATCCCAAT	0.378													24	58					7.87624e-14	8.83987e-14	1	1	0	
EMCN	51705	broad.mit.edu	37	4	101342465	101342465	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:101342465T>A	uc003hvr.2	-	8	817	c.638A>T	c.(637-639)TAC>TTC	p.Y213F	EMCN_uc011cel.1_Missense_Mutation_p.Y200F|EMCN_uc011cem.1_Intron	NM_016242	NP_057326	Q9ULC0	MUCEN_HUMAN	endomucin isoform 1	213	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(123;2.49e-08)		GCACATTCGGTACAAACCCAC	0.348													34	59					0	0	1	0	0	
SLC39A8	64116	broad.mit.edu	37	4	103226180	103226180	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:103226180C>T	uc003hwb.1	-	4	1170	c.641G>A	c.(640-642)AGA>AAA	p.R214K	SLC39A8_uc011ceo.1_Missense_Mutation_p.R214K|SLC39A8_uc003hwa.1_Missense_Mutation_p.R147K|SLC39A8_uc003hwc.2_Missense_Mutation_p.R214K	NM_022154	NP_071437	Q9C0K1	S39A8_HUMAN	solute carrier family 39 (zinc transporter),	214	Extracellular (Potential).					integral to membrane|organelle membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(203;0.217)		all cancers(1;9.78e-10)|OV - Ovarian serous cystadenocarcinoma(123;1.52e-09)|GBM - Glioblastoma multiforme(1;0.000142)		CTTTAGCATTCTTTCAAAAAA	0.333													22	35					0	0	1	0	0	
UBE2D3	7323	broad.mit.edu	37	4	103747704	103747704	+	Translation_Start_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:103747704T>C	uc003hwk.2	-	2	423	c.-38A>G	c.(-40--36)ATACA>ATGCA		UBE2D3_uc003hwi.2_Translation_Start_Site|UBE2D3_uc003hwj.2_RNA|UBE2D3_uc003hwl.2_Translation_Start_Site|UBE2D3_uc011cet.1_Translation_Start_Site|UBE2D3_uc011ceu.1_Translation_Start_Site|UBE2D3_uc003hwo.2_Translation_Start_Site|UBE2D3_uc003hwp.2_Translation_Start_Site|UBE2D3_uc003hwq.2_Intron|UBE2D3_uc003hwr.2_Translation_Start_Site|uc003hws.1_5'Flank	NM_181887	NP_871616	P61077	UB2D3_HUMAN	ubiquitin-conjugating enzyme E2D 3 isoform 1						apoptosis|BMP signaling pathway|DNA repair|negative regulation of type I interferon production|proteasomal ubiquitin-dependent protein catabolic process|protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein monoubiquitination|transforming growth factor beta receptor signaling pathway	endosome membrane|plasma membrane	ATP binding|protein binding|ubiquitin-protein ligase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.13e-08)		TCTCTCGGTGTATGCTCAAAG	0.557													57	96					0	0	1	0	0	
NHEDC2	133308	broad.mit.edu	37	4	103966064	103966064	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:103966064A>C	uc003hwx.3	-	8	1851	c.979T>G	c.(979-981)TTT>GTT	p.F327V	NHEDC2_uc010iln.1_Missense_Mutation_p.F179V|NHEDC2_uc003hwy.2_Missense_Mutation_p.F327V|NHEDC2_uc011cew.1_Missense_Mutation_p.F270V|NHEDC2_uc011cex.1_Missense_Mutation_p.F270V	NM_178833	NP_849155	Q86UD5	NHDC2_HUMAN	Na+/H+ exchanger domain containing 2	327	Helical; (Potential).				sodium ion transport	integral to membrane|mitochondrial membrane	solute:hydrogen antiporter activity				0				OV - Ovarian serous cystadenocarcinoma(123;2.3e-08)		CGGCTTGGAAAGTACTGAATG	0.393													45	134					0	0	1	0	0	
BDH2	56898	broad.mit.edu	37	4	104003289	104003289	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:104003289G>A	uc003hwz.2	-	9	738	c.633C>T	c.(631-633)TTC>TTT	p.F211F	BDH2_uc003hxa.2_RNA	NM_020139	NP_064524	Q9BUT1	BDH2_HUMAN	3-hydroxybutyrate dehydrogenase, type 2	211					fatty acid beta-oxidation|heme metabolic process|iron ion homeostasis|siderophore biosynthetic process	cytoplasm	3-hydroxybutyrate dehydrogenase activity|NAD binding|oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.02e-08)		CTGCAGTTGCGAATCTTCCCG	0.463													17	44					0	0	1	0	0	
CENPE	1062	broad.mit.edu	37	4	104080192	104080192	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:104080192G>A	uc003hxb.1	-	22	2666	c.2576C>T	c.(2575-2577)TCG>TTG	p.S859L	CENPE_uc003hxc.1_Missense_Mutation_p.S834L	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	859	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		ACCCAAACTCGAATCAAATTT	0.383													21	55					0	0	1	0	0	
CENPE	1062	broad.mit.edu	37	4	104081903	104081903	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:104081903A>C	uc003hxb.1	-	21	2255	c.2165T>G	c.(2164-2166)ATT>AGT	p.I722S	CENPE_uc003hxc.1_Missense_Mutation_p.I697S	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	722	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		AAGATCAGTAATCTTTCCTTC	0.299													40	81					0	0	1	0	0	
CENPE	1062	broad.mit.edu	37	4	104098057	104098057	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:104098057T>C	uc003hxb.1	-	14	1479	c.1389A>G	c.(1387-1389)GAA>GAG	p.E463E	CENPE_uc003hxc.1_Silent_p.E463E	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	463	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		AGCACTCACATTCATCAATTT	0.254													14	13					0	0	1	0	0	
CENPE	1062	broad.mit.edu	37	4	104116366	104116366	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:104116366G>A	uc003hxb.1	-	5	472	c.382C>T	c.(382-384)CGT>TGT	p.R128C	CENPE_uc003hxc.1_Missense_Mutation_p.R128C	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	128	Kinesin-motor.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TAAGATACACGTAAGAGAAAT	0.323													19	47					0	0	1	0	0	
CENPE	1062	broad.mit.edu	37	4	104117407	104117407	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:104117407G>A	uc003hxb.1	-	3	241	c.151C>T	c.(151-153)CGT>TGT	p.R51C	CENPE_uc003hxc.1_Missense_Mutation_p.R51C	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	51	Kinesin-motor.			R -> H (in Ref. 5; BAF83051).	blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TGAAAGACACGATCTAaacaa	0.299													15	35					0	0	1	0	0	
TET2	54790	broad.mit.edu	37	4	106156276	106156276	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:106156276T>G	uc003hxk.2	+	3	1563	c.1177T>G	c.(1177-1179)TCT>GCT	p.S393A	TET2_uc011cez.1_Missense_Mutation_p.S414A|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.S393A|TET2_uc003hxi.1_Missense_Mutation_p.S393A	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	393					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	p.(S393_A394)fs*(49_50)(1)		haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		GGATTCCTTTTCTGCCACTAC	0.458			Mis N|F		MDS								41	102					0	0	1	0	0	
TET2	54790	broad.mit.edu	37	4	106156313	106156313	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:106156313T>G	uc003hxk.2	+	3	1600	c.1214T>G	c.(1213-1215)CTT>CGT	p.L405R	TET2_uc011cez.1_Missense_Mutation_p.L426R|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.L405R|TET2_uc003hxi.1_Missense_Mutation_p.L405R	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	405	Pro-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TCACAATTGCTTCTTTCTCCC	0.458			Mis N|F		MDS								39	109					0	0	1	0	0	
TET2	54790	broad.mit.edu	37	4	106156805	106156805	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:106156805C>T	uc003hxk.2	+	3	2092	c.1706C>T	c.(1705-1707)GCC>GTC	p.A569V	TET2_uc011cez.1_Missense_Mutation_p.A590V|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.A569V|TET2_uc003hxi.1_Missense_Mutation_p.A569V	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	569					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		GAATTGAAGGCCCCTCGTTTT	0.463			Mis N|F		MDS								22	89					0	0	1	0	0	
PPA2	27068	broad.mit.edu	37	4	106377901	106377901	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:106377901C>A	uc003hxl.2	-	2	179	c.159G>T	c.(157-159)AAG>AAT	p.K53N	PPA2_uc003hxm.2_Missense_Mutation_p.K53N|PPA2_uc003hxn.2_Missense_Mutation_p.K53N|PPA2_uc003hxo.2_Missense_Mutation_p.K53N|PPA2_uc003hxp.2_Intron|PPA2_uc003hxq.2_5'UTR|PPA2_uc003hxr.2_Intron|PPA2_uc011cfa.1_Intron	NM_176869	NP_789845	Q9H2U2	IPYR2_HUMAN	inorganic pyrophosphatase 2 isoform 1 precursor	53					diphosphate metabolic process|tRNA aminoacylation for protein translation	mitochondrial matrix	inorganic diphosphatase activity|magnesium ion binding			pancreas(1)	1		Myeloproliferative disorder(5;0.0255)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.03e-07)		CAGTTACATTCTCTGCAAAGA	0.333													26	78					3.00307e-07	3.14794e-07	1	1	0	
SGMS2	166929	broad.mit.edu	37	4	108824539	108824539	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:108824539G>T	uc003hyl.3	+	5	1279	c.724G>T	c.(724-726)GAA>TAA	p.E242*	uc003hym.1_Intron|SGMS2_uc003hyn.2_Nonsense_Mutation_p.E242*|SGMS2_uc003hyo.2_Nonsense_Mutation_p.E242*	NM_001136258	NP_001129730	Q8NHU3	SMS2_HUMAN	sphingomyelin synthase 2	242					sphingomyelin biosynthetic process	integral to Golgi membrane|integral to plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			lung(1)	1				OV - Ovarian serous cystadenocarcinoma(123;2.95e-05)	Choline(DB00122)	GTTCATCAAAGAATGTAAGTA	0.453													27	49					6.32553e-13	7.03772e-13	1	1	0	
CYP2U1	113612	broad.mit.edu	37	4	108866502	108866502	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:108866502A>C	uc003hyp.2	+	2	950	c.867A>C	c.(865-867)CAA>CAC	p.Q289H	CYP2U1_uc011cfi.1_Missense_Mutation_p.Q80H	NM_183075	NP_898898	Q7Z449	CP2U1_HUMAN	cytochrome P450, family 2, subfamily U,	289					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000128)		AATTAAGACAAATTGAAAAGG	0.403													38	52					0	0	1	0	0	
CYP2U1	113612	broad.mit.edu	37	4	108866523	108866523	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:108866523T>C	uc003hyp.2	+	2	971	c.888T>C	c.(886-888)AGT>AGC	p.S296S	CYP2U1_uc011cfi.1_Silent_p.S87S	NM_183075	NP_898898	Q7Z449	CP2U1_HUMAN	cytochrome P450, family 2, subfamily U,	296					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000128)		ATATAACCAGTTTCCTTAAAA	0.403													31	41					0	0	1	0	0	
CYP2U1	113612	broad.mit.edu	37	4	108870649	108870649	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:108870649G>T	uc003hyp.2	+	4	1515	c.1432G>T	c.(1432-1434)GAA>TAA	p.E478*	CYP2U1_uc011cfi.1_Nonsense_Mutation_p.E269*	NM_183075	NP_898898	Q7Z449	CP2U1_HUMAN	cytochrome P450, family 2, subfamily U,	478					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000128)		AATTAAAAAAGAAACCTTTAT	0.333													13	31					7.03913e-09	7.52015e-09	1	1	0	
AGXT2L1	64850	broad.mit.edu	37	4	109663646	109663646	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:109663646C>A	uc003hzc.2	-	13	1675	c.1494G>T	c.(1492-1494)AAG>AAT	p.K498N	AGXT2L1_uc010imc.2_Missense_Mutation_p.K492N|AGXT2L1_uc011cfm.1_Missense_Mutation_p.K458N|AGXT2L1_uc011cfn.1_Missense_Mutation_p.K425N|AGXT2L1_uc011cfo.1_Missense_Mutation_p.K440N	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	498					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		TCAGTCATGTCTTGAGCCTCT	0.418													41	96					1.23103e-26	1.49092e-26	1	1	0	
COL25A1	84570	broad.mit.edu	37	4	109895713	109895713	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:109895713G>A	uc003hze.1	-	6	972	c.441C>T	c.(439-441)GGC>GGT	p.G147G	COL25A1_uc003hzg.2_Silent_p.G147G|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_5'UTR	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	147	Extracellular (Potential).|Collagen-like 1.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		GACCAGGAGGGCCCTGAAAAA	0.323													28	70					0	0	1	0	0	
SEC24B	10427	broad.mit.edu	37	4	110434991	110434991	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:110434991C>A	uc003hzk.2	+	10	2047	c.1992C>A	c.(1990-1992)TTC>TTA	p.F664L	SEC24B_uc003hzl.2_Missense_Mutation_p.F629L|SEC24B_uc011cfp.1_Missense_Mutation_p.F694L|SEC24B_uc011cfq.1_Missense_Mutation_p.F663L|SEC24B_uc011cfr.1_Missense_Mutation_p.F628L	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	664					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		CTGTGGAGTTCATTGCTTCTT	0.353													56	85					2.48909e-17	2.8784e-17	1	1	0	
SEC24B	10427	broad.mit.edu	37	4	110446055	110446055	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:110446055T>G	uc003hzk.2	+	15	2645	c.2590T>G	c.(2590-2592)TTG>GTG	p.L864V	SEC24B_uc003hzl.2_Missense_Mutation_p.L829V|SEC24B_uc011cfp.1_Missense_Mutation_p.L894V|SEC24B_uc011cfq.1_Missense_Mutation_p.L863V|SEC24B_uc011cfr.1_Missense_Mutation_p.L828V	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	864					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		TGCAGTGGATTTGTTCCTTTT	0.353													22	52					0	0	1	0	0	
SEC24B	10427	broad.mit.edu	37	4	110451453	110451453	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:110451453C>T	uc003hzk.2	+	19	3140	c.3085C>T	c.(3085-3087)CGG>TGG	p.R1029W	SEC24B_uc003hzl.2_Missense_Mutation_p.R994W|SEC24B_uc011cfp.1_Missense_Mutation_p.R1059W|SEC24B_uc011cfq.1_Missense_Mutation_p.R1028W|SEC24B_uc011cfr.1_Missense_Mutation_p.R993W	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	1029					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		AGCTGTGGATCGGTCCGTTTC	0.378													19	58					0	0	1	0	0	
CCDC109B	55013	broad.mit.edu	37	4	110605624	110605624	+	Missense_Mutation	SNP	C	T	T	rs149233225		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:110605624C>T	uc011cfs.1	+	6	777	c.638C>T	c.(637-639)TCG>TTG	p.S213L		NM_017918	NP_060388	Q9NWR8	C109B_HUMAN	coiled-coil domain containing 109B	213						integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;6.65e-06)		GAAGCTCATTCGGAAGCCAAA	0.493													23	45					0	0	1	0	0	
CFI	3426	broad.mit.edu	37	4	110687839	110687839	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:110687839A>G	uc003hzr.3	-	2	407	c.199T>C	c.(199-201)TGC>CGC	p.C67R	CFI_uc011cft.1_Missense_Mutation_p.C67R|CFI_uc003hzs.3_Missense_Mutation_p.C67R	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	67	Kazal-like.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		TTCTTTGGGCACTGATACGGT	0.448													21	49					0	0	1	0	0	
EGF	1950	broad.mit.edu	37	4	110862234	110862234	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:110862234G>T	uc003hzy.3	+	2	712	c.260G>T	c.(259-261)AGA>ATA	p.R87I	EGF_uc011cfu.1_Missense_Mutation_p.R87I|EGF_uc011cfv.1_Missense_Mutation_p.R87I	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	87	LDL-receptor class B 1.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	AATGAGAAAAGAATCTATTGG	0.373													27	67					6.32553e-13	7.03772e-13	1	1	0	
EGF	1950	broad.mit.edu	37	4	110901199	110901199	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:110901199A>C	uc003hzy.3	+	14	2577	c.2125A>C	c.(2125-2127)AGA>CGA	p.R709R	EGF_uc011cfu.1_Silent_p.R667R|EGF_uc011cfv.1_Silent_p.R709R|EGF_uc010imk.2_5'Flank	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	709	Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	ATCAGTAATGAGAGTAAACAA	0.443													30	67					0	0	1	0	0	
PITX2	5308	broad.mit.edu	37	4	111542364	111542364	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:111542364C>T	uc003iad.2	-	4	928	c.346G>A	c.(346-348)GAA>AAA	p.E116K	PITX2_uc003iac.2_Missense_Mutation_p.E123K|PITX2_uc003iae.2_Missense_Mutation_p.E70K|PITX2_uc010iml.2_Intron|PITX2_uc003iaf.2_Missense_Mutation_p.E116K|PITX2_uc003iag.1_Missense_Mutation_p.E123K	NM_153426	NP_700475	Q99697	PITX2_HUMAN	paired-like homeodomain transcription factor 2	116	Homeobox.				determination of left/right symmetry|organ morphogenesis	transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription factor binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00222)		GCGATTTCTTCGCGTGTGGAC	0.617													24	28					0	0	1	0	0	
C4orf21	55345	broad.mit.edu	37	4	113508552	113508552	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:113508552A>G	uc003iau.2	-	12	3872	c.3661T>C	c.(3661-3663)TCG>CCG	p.S1221P	C4orf21_uc003iav.2_RNA	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	43						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		CTGGAAACCGAATCTTGACTG	0.388													80	172					0	0	1	0	0	
C4orf21	55345	broad.mit.edu	37	4	113508887	113508887	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:113508887A>C	uc003iau.2	-	12	3537	c.3326T>G	c.(3325-3327)CTT>CGT	p.L1109R	C4orf21_uc003iav.2_RNA	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		GCTAAACGAAAGAACTGCTGA	0.413													3	8					0	0	1	0	0	
C4orf21	55345	broad.mit.edu	37	4	113545027	113545027	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:113545027A>C	uc003iau.2	-	4	319	c.108T>G	c.(106-108)ATT>ATG	p.I36M	C4orf21_uc003iaw.2_Missense_Mutation_p.I36M	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		CATCATATAAAATTGCCTGTA	0.254													7	24					0	0	1	0	0	
ANK2	287	broad.mit.edu	37	4	114276905	114276905	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:114276905C>T	uc003ibe.3	+	38	7231	c.7131C>T	c.(7129-7131)GAC>GAT	p.D2377D	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Translation_Start_Site|ANK2_uc011cgb.1_Silent_p.D2392D	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2344					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CCACCTCAGACGAGACAAAGG	0.498													21	47					0	0	1	0	0	
ANK2	287	broad.mit.edu	37	4	114278303	114278303	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:114278303C>T	uc003ibe.3	+	38	8629	c.8529C>T	c.(8527-8529)AGC>AGT	p.S2843S	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Silent_p.S145S|ANK2_uc011cgb.1_Silent_p.S2858S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2810					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CCAGTGAAAGCTTTTCATCTT	0.403													60	120					0	0	1	0	0	
ANK2	287	broad.mit.edu	37	4	114284541	114284541	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:114284541C>T	uc003ibe.3	+	40	10904	c.10804C>T	c.(10804-10806)CGA>TGA	p.R3602*	ANK2_uc003ibd.3_Nonsense_Mutation_p.R1508*|ANK2_uc003ibf.3_Nonsense_Mutation_p.R1517*|ANK2_uc011cgc.1_Nonsense_Mutation_p.R693*|ANK2_uc003ibg.3_Nonsense_Mutation_p.R501*|ANK2_uc003ibh.3_Nonsense_Mutation_p.R191*|ANK2_uc011cgd.1_Nonsense_Mutation_p.R904*	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3569	Death.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TCATCAAATTCGAATTGAAAA	0.388													18	40					0	0	1	0	0	
NDST4	64579	broad.mit.edu	37	4	115898385	115898385	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:115898385A>C	uc003ibu.2	-	3	1703	c.1024T>G	c.(1024-1026)TTT>GTT	p.F342V	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	342	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TTGAAGGTAAAATTTGCAACC	0.323													35	49					0	0	1	0	0	
NDST3	9348	broad.mit.edu	37	4	118975799	118975799	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:118975799C>A	uc003ibx.2	+	2	1137	c.734C>A	c.(733-735)TCT>TAT	p.S245Y	NDST3_uc011cgf.1_Missense_Mutation_p.S245Y|NDST3_uc003ibw.2_Missense_Mutation_p.S245Y	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	245	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						GAAAACCTTTCTCCTTCCATC	0.383													66	85					6.07242e-22	7.22307e-22	1	1	0	
NDST3	9348	broad.mit.edu	37	4	118975970	118975970	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:118975970A>G	uc003ibx.2	+	2	1308	c.905A>G	c.(904-906)GAC>GGC	p.D302G	NDST3_uc011cgf.1_Missense_Mutation_p.D302G|NDST3_uc003ibw.2_Missense_Mutation_p.D302G	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	302	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						TTGTCCTTGGACAGGTACATT	0.398													80	126					0	0	1	0	0	
PRSS12	8492	broad.mit.edu	37	4	119229642	119229642	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:119229642T>C	uc003ica.1	-	8	1627	c.1580A>G	c.(1579-1581)GAT>GGT	p.D527G		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	527	SRCR 4.					membrane	scavenger receptor activity			skin(1)	1						AGTCCATCCATCATCACAGAT	0.423													54	105					0	0	1	0	0	
SYNPO2	171024	broad.mit.edu	37	4	119952619	119952619	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:119952619G>A	uc003icm.3	+	4	2885	c.2689G>A	c.(2689-2691)GCT>ACT	p.A897T	SYNPO2_uc010ina.2_Missense_Mutation_p.A897T|SYNPO2_uc010inb.2_Missense_Mutation_p.A897T|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.A825T	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	897						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						GCAGGCCCACGCTGCTCGAGC	0.552													42	71					0	0	1	0	0	
SYNPO2	171024	broad.mit.edu	37	4	119952769	119952769	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:119952769C>T	uc003icm.3	+	4	3035	c.2839C>T	c.(2839-2841)CCC>TCC	p.P947S	SYNPO2_uc010ina.2_Missense_Mutation_p.P947S|SYNPO2_uc010inb.2_Missense_Mutation_p.P947S|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.P875S	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	947						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						AGCTGCACAGCCCTCCAAAAT	0.502													38	53					0	0	1	0	0	
SYNPO2	171024	broad.mit.edu	37	4	119953078	119953078	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:119953078C>T	uc003icm.3	+	4	3344	c.3148C>T	c.(3148-3150)CCT>TCT	p.P1050S	SYNPO2_uc010ina.2_Missense_Mutation_p.P1050S|SYNPO2_uc010inb.2_Missense_Mutation_p.P1050S|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Intron	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	1050						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						ATCCCCAGTGCCTGTGGGCAT	0.517													25	47					0	0	1	0	0	
USP53	54532	broad.mit.edu	37	4	120192574	120192574	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:120192574G>A	uc003ics.3	+	15	2625	c.1559G>A	c.(1558-1560)CGA>CAA	p.R520Q	USP53_uc003icr.3_Missense_Mutation_p.R520Q|USP53_uc003icu.3_Missense_Mutation_p.R143Q|USP53_uc003ict.2_Missense_Mutation_p.R143Q	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	520					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						AAACATGACCGAGTTGTACCT	0.398													41	81					0	0	1	0	0	
USP53	54532	broad.mit.edu	37	4	120213820	120213820	+	Silent	SNP	G	A	A	rs10010374		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:120213820G>A	uc003ics.3	+	18	3742	c.2676G>A	c.(2674-2676)GAG>GAA	p.E892E	USP53_uc003icr.3_Silent_p.E892E|USP53_uc003icu.3_Silent_p.E515E	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	892					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						GTTACTTTGAGAACTCTCTAT	0.428													28	50					0	0	1	0	0	
PDE5A	8654	broad.mit.edu	37	4	120419777	120419777	+	Silent	SNP	G	A	A	rs143408453	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:120419777G>A	uc003idh.2	-	21	2762	c.2607C>T	c.(2605-2607)AGC>AGT	p.S869S	uc003ide.3_Intron|PDE5A_uc003idf.2_Silent_p.S827S|PDE5A_uc003idg.2_Silent_p.S817S	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	869					platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	TGGCCTGGCCGCTTTCCCCAT	0.488													33	54					0	0	1	0	0	
C4orf31	79625	broad.mit.edu	37	4	121957679	121957679	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:121957679T>G	uc003idq.1	-	4	1974	c.1447A>C	c.(1447-1449)AAA>CAA	p.K483Q		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	483	Fibronectin type-III 2.										0						TCCACTTCTTTTTTGTAGATG	0.428													46	85					0	0	1	0	0	
C4orf31	79625	broad.mit.edu	37	4	121958329	121958329	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:121958329C>T	uc003idq.1	-	4	1324	c.797G>A	c.(796-798)CGC>CAC	p.R266H		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	266	Fibronectin type-III 1.										0						CTGGAAACTGCGTTCTTTACC	0.458													31	51					0	0	1	0	0	
QRFPR	84109	broad.mit.edu	37	4	122250697	122250697	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:122250697G>A	uc010inj.1	-	6	1447	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	QRFPR_uc010ink.1_RNA|QRFPR_uc003ids.2_3'UTR	NM_198179	NP_937822	Q96P65	QRFPR_HUMAN	G protein-coupled receptor 103	356	Cytoplasmic (Potential).					plasma membrane	neuropeptide Y receptor activity				0						GTGCTGGAGAGAAGGTTTTAT	0.373													45	96					0	0	1	0	0	
EXOSC9	5393	broad.mit.edu	37	4	122732818	122732818	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:122732818A>C	uc003iea.2	+	8	927	c.819A>C	c.(817-819)CAA>CAC	p.Q273H	EXOSC9_uc003idz.2_Missense_Mutation_p.Q273H|EXOSC9_uc003ieb.2_Missense_Mutation_p.Q257H|EXOSC9_uc010inp.1_RNA	NM_005033	NP_005024	Q06265	EXOS9_HUMAN	exosome component 9 isoform 2	273					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|immune response|nuclear mRNA surveillance|nuclear polyadenylation-dependent rRNA catabolic process|positive regulation of cell growth|rRNA processing	cytosol|nuclear exosome (RNase complex)|nucleolus|nucleolus|nucleus	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0						AGAATGACCAAAAAGTAAGGT	0.279													21	24					0	0	1	0	0	
KIAA1109	84162	broad.mit.edu	37	4	123160734	123160734	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:123160734T>C	uc003ieh.2	+	27	3942	c.3897T>C	c.(3895-3897)GGT>GGC	p.G1299G	KIAA1109_uc003iei.1_Silent_p.G1052G|KIAA1109_uc010ins.1_Silent_p.G642G|KIAA1109_uc003iek.2_5'UTR	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	1299					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AGTCAGTAGGTCAATCTCCTC	0.428													28	69					0	0	1	0	0	
KIAA1109	84162	broad.mit.edu	37	4	123179988	123179988	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:123179988T>C	uc003ieh.2	+	40	6797	c.6752T>C	c.(6751-6753)TTA>TCA	p.L2251S	KIAA1109_uc003iel.1_Missense_Mutation_p.L186S|KIAA1109_uc003iek.2_Missense_Mutation_p.L870S	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2251					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GACTCTGCATTAAAAATAAAG	0.383													13	39					0	0	1	0	0	
KIAA1109	84162	broad.mit.edu	37	4	123265632	123265632	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:123265632C>T	uc003ieh.2	+	72	12694	c.12649C>T	c.(12649-12651)CGT>TGT	p.R4217C	KIAA1109_uc003iem.2_Missense_Mutation_p.R573C|KIAA1109_uc003ien.2_Missense_Mutation_p.R151C	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4217					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						ACGGATCAGGCGTTCAGGAGG	0.393													31	91					0	0	1	0	0	
KIAA1109	84162	broad.mit.edu	37	4	123274229	123274229	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:123274229C>T	uc003ieh.2	+	79	14065	c.14020C>T	c.(14020-14022)CGT>TGT	p.R4674C	KIAA1109_uc003iem.2_Missense_Mutation_p.R1030C	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4674					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCCAAATTTTCGTTCAAAATC	0.368													28	60					0	0	1	0	0	
ADAD1	132612	broad.mit.edu	37	4	123336586	123336586	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:123336586T>C	uc003ieo.2	+	11	1534	c.1302T>C	c.(1300-1302)CGT>CGC	p.R434R	ADAD1_uc003iep.2_Silent_p.R423R|ADAD1_uc003ieq.2_Silent_p.R416R	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	434	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TAAAGCAACGTGTTGATGATG	0.373													41	99					0	0	1	0	0	
BBS12	166379	broad.mit.edu	37	4	123663068	123663068	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:123663068C>T	uc003ieu.2	+	2	214	c.21C>T	c.(19-21)GTC>GTT	p.V7V		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	7					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						CTTGCAGAGTCGTAAACAAAA	0.318									Bardet-Biedl_syndrome				23	41					0	0	1	0	0	
NUDT6	11162	broad.mit.edu	37	4	123818804	123818804	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:123818804G>A	uc003iew.2	-	4	560	c.528C>T	c.(526-528)GGC>GGT	p.G176G	FGF2_uc003iev.1_3'UTR|NUDT6_uc003iex.2_Silent_p.G7G	NM_007083	NP_009014	P53370	NUDT6_HUMAN	nudix-type motif 6 isoform a	176	Nudix hydrolase.|Nudix box.					mitochondrion|nucleus	growth factor activity|hydrolase activity				0						GCTCTGACAGGCCTCCTGGAA	0.308													26	45					0	0	1	0	0	
NUDT6	11162	broad.mit.edu	37	4	123838690	123838690	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:123838690T>G	uc003iew.2	-	2	440	c.408A>C	c.(406-408)TTA>TTC	p.L136F	NUDT6_uc003iex.2_5'UTR	NM_007083	NP_009014	P53370	NUDT6_HUMAN	nudix-type motif 6 isoform a	136						mitochondrion|nucleus	growth factor activity|hydrolase activity				0						CATATCCTGGTAATCTGCTGG	0.458													30	92					0	0	1	0	0	
FAT4	79633	broad.mit.edu	37	4	126239987	126239987	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:126239987G>A	uc003ifj.3	+	1	2421	c.2421G>A	c.(2419-2421)GCG>GCA	p.A807A		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	807	Extracellular (Potential).|Cadherin 8.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGAACGTGGCGCTGGGATATC	0.453													59	97					0	0	1	0	0	
FAT4	79633	broad.mit.edu	37	4	126328095	126328095	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:126328095G>A	uc003ifj.3	+	3	5368	c.5368G>A	c.(5368-5370)GAC>AAC	p.D1790N	FAT4_uc011cgp.1_Missense_Mutation_p.D88N	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1790	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTTTCGCATCGACCCAGAATC	0.473													38	94					0	0	1	0	0	
FAT4	79633	broad.mit.edu	37	4	126328144	126328144	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:126328144G>A	uc003ifj.3	+	3	5417	c.5417G>A	c.(5416-5418)CGC>CAC	p.R1806H	FAT4_uc011cgp.1_Missense_Mutation_p.R104H	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1806	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GACAGGGAACGCCGCTCCAAA	0.473													57	126					0	0	1	0	0	
FAT4	79633	broad.mit.edu	37	4	126371220	126371220	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:126371220T>C	uc003ifj.3	+	9	9049	c.9049T>C	c.(9049-9051)TCA>CCA	p.S3017P	FAT4_uc011cgp.1_Missense_Mutation_p.S1315P|FAT4_uc003ifi.1_Missense_Mutation_p.S495P	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3017	Extracellular (Potential).|Cadherin 29.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGGACTGAATTCAGAAGTGGA	0.343													36	58					0	0	1	0	0	
FAT4	79633	broad.mit.edu	37	4	126372053	126372053	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:126372053T>C	uc003ifj.3	+	9	9882	c.9882T>C	c.(9880-9882)TAT>TAC	p.Y3294Y	FAT4_uc011cgp.1_Silent_p.Y1592Y|FAT4_uc003ifi.1_Silent_p.Y772Y	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3294	Cadherin 31.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAAATGAATATGTGCCCCGTT	0.408													22	55					0	0	1	0	0	
FAT4	79633	broad.mit.edu	37	4	126372616	126372616	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:126372616C>A	uc003ifj.3	+	9	10445	c.10445C>A	c.(10444-10446)GCT>GAT	p.A3482D	FAT4_uc011cgp.1_Missense_Mutation_p.A1780D|FAT4_uc003ifi.1_Missense_Mutation_p.A960D	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3482	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TCAGTTTTGGCTGTTGATTCA	0.453													47	114					3.39706e-21	4.02498e-21	1	1	0	
FAT4	79633	broad.mit.edu	37	4	126400929	126400929	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:126400929C>T	uc003ifj.3	+	14	12507	c.12507C>T	c.(12505-12507)AGC>AGT	p.S4169S	FAT4_uc011cgp.1_Intron|FAT4_uc003ifi.1_Silent_p.S1647S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4169	EGF-like 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTACTCGCAGCCCATGCCAAC	0.423													11	34					0	0	1	0	0	
FAT4	79633	broad.mit.edu	37	4	126412663	126412663	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:126412663C>T	uc003ifj.3	+	17	14686	c.14686C>T	c.(14686-14688)CGC>TGC	p.R4896C	FAT4_uc011cgp.1_Missense_Mutation_p.R3137C|FAT4_uc003ifi.1_Missense_Mutation_p.R2373C	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4896	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTACCACGGTCGCAGGGCCGA	0.522													25	51					0	0	1	0	0	
HSPA4L	22824	broad.mit.edu	37	4	128739553	128739553	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:128739553A>G	uc003ifm.2	+	13	1905	c.1652A>G	c.(1651-1653)GAT>GGT	p.D551G	HSPA4L_uc010iny.1_Missense_Mutation_p.D510G|HSPA4L_uc011cgr.1_Missense_Mutation_p.D518G	NM_014278	NP_055093	O95757	HS74L_HUMAN	heat shock 70kDa protein 4-like	551					protein folding|response to unfolded protein	cytoplasm|nucleus	ATP binding|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GAGGAAATTGATCATACAGGA	0.299													29	56					0	0	1	0	0	
PLK4	10733	broad.mit.edu	37	4	128804620	128804620	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:128804620T>G	uc003ifo.2	+	4	494	c.249T>G	c.(247-249)AAT>AAG	p.N83K	PLK4_uc011cgs.1_Missense_Mutation_p.N51K|PLK4_uc011cgt.1_Missense_Mutation_p.N42K	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	83	Protein kinase.				G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						AAGATAGCAATTATGTGTATC	0.313													16	46					0	0	1	0	0	
C4orf29	80167	broad.mit.edu	37	4	128941239	128941239	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:128941239C>T	uc003ifr.2	+	10	932	c.614C>T	c.(613-615)GCT>GTT	p.A205V	C4orf29_uc003ifs.2_Missense_Mutation_p.A99V|C4orf29_uc003ift.2_Missense_Mutation_p.A36V|C4orf29_uc003ifu.2_Missense_Mutation_p.A36V|C4orf29_uc010inz.2_Missense_Mutation_p.A2V|C4orf29_uc003ifv.2_Missense_Mutation_p.A36V	NM_001039717	NP_001034806	Q0P651	CD029_HUMAN	hypothetical protein LOC80167 precursor	205						extracellular region				ovary(1)	1						TTACAGATGGCTTCCTTAGCG	0.368													7	24					0	0	1	0	0	
PCDH10	57575	broad.mit.edu	37	4	134071595	134071595	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:134071595G>T	uc003iha.2	+	1	1126	c.300G>T	c.(298-300)GAG>GAT	p.E100D	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.E100D	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	100	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TCTTTCTGGAGAACCCCCTGG	0.557													31	79					3.99451e-17	4.61668e-17	1	1	0	
PCDH10	57575	broad.mit.edu	37	4	134072121	134072121	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:134072121G>A	uc003iha.2	+	1	1652	c.826G>A	c.(826-828)GAC>AAC	p.D276N	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.D276N	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	276	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		CAACGCCACCGACCCGGACGA	0.627													39	72					0	0	1	0	0	
PCDH10	57575	broad.mit.edu	37	4	134075511	134075511	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:134075511G>A	uc003iha.2	+	2	3507	c.2681G>A	c.(2680-2682)CGA>CAA	p.R894Q		NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	894	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		AGACCTCGCCGAGTTAACAGG	0.353													13	18					0	0	1	0	0	
PCDH18	54510	broad.mit.edu	37	4	138450792	138450792	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:138450792G>T	uc003ihe.3	-	1	2838	c.2451C>A	c.(2449-2451)TTC>TTA	p.F817L	PCDH18_uc003ihf.3_Missense_Mutation_p.F810L|PCDH18_uc011cgz.1_Missense_Mutation_p.F28L|PCDH18_uc003ihg.3_Missense_Mutation_p.F597L|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	817	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GTTCTAATGAGAAATTCTCTG	0.458													16	32					3.32936e-07	3.48551e-07	1	1	0	
PCDH18	54510	broad.mit.edu	37	4	138451451	138451451	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:138451451A>C	uc003ihe.3	-	1	2179	c.1792T>G	c.(1792-1794)TTT>GTT	p.F598V	PCDH18_uc003ihf.3_Missense_Mutation_p.F591V|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.F378V|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	598	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GTGACATGAAAGCCACTTTCA	0.443													114	186					0	0	1	0	0	
PCDH18	54510	broad.mit.edu	37	4	138451957	138451957	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:138451957G>T	uc003ihe.3	-	1	1673	c.1286C>A	c.(1285-1287)TCT>TAT	p.S429Y	PCDH18_uc003ihf.3_Missense_Mutation_p.S422Y|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.S209Y|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	429	Cadherin 4.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ACTATACTCAGATCTCTTTTC	0.363													41	103					4.14481e-20	4.8834e-20	1	1	0	
PCDH18	54510	broad.mit.edu	37	4	138452515	138452515	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:138452515C>T	uc003ihe.3	-	1	1115	c.728G>A	c.(727-729)AGC>AAC	p.S243N	PCDH18_uc003ihf.3_Missense_Mutation_p.S236N|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.S23N|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	243	Extracellular (Potential).|Cadherin 2.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					AAAAGCAGGGCTGTTGTCATT	0.463													39	75					0	0	1	0	0	
NAA15	80155	broad.mit.edu	37	4	140306065	140306065	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:140306065G>A	uc003ihu.1	+	18	2491	c.2235G>A	c.(2233-2235)ACG>ACA	p.T745T		NM_057175	NP_476516	Q9BXJ9	NAA15_HUMAN	NMDA receptor regulated 1	745					angiogenesis|cell differentiation|N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	protein binding			ovary(1)|skin(1)	2						TTGGAGCAACGAATCCAAAGA	0.284													18	36					0	0	1	0	0	
NAA15	80155	broad.mit.edu	37	4	140306076	140306076	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:140306076A>C	uc003ihu.1	+	18	2502	c.2246A>C	c.(2245-2247)AAT>ACT	p.N749T		NM_057175	NP_476516	Q9BXJ9	NAA15_HUMAN	NMDA receptor regulated 1	749					angiogenesis|cell differentiation|N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	protein binding			ovary(1)|skin(1)	2						AATCCAAAGAATTTTAATGAA	0.303													4	48					0	0	1	0	0	
CLGN	1047	broad.mit.edu	37	4	141315154	141315154	+	Silent	SNP	G	A	A	rs76550209	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:141315154G>A	uc011chi.1	-	12	1409	c.1191C>T	c.(1189-1191)TTC>TTT	p.F397F	CLGN_uc003iii.2_Silent_p.F397F	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	397	Lumenal (Potential).|2-4.				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					GATCATCTTCGAAATAATCTG	0.323													15	41					0	0	1	0	0	
UCP1	7350	broad.mit.edu	37	4	141489041	141489041	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:141489041T>G	uc011chj.1	-	2	293	c.217A>C	c.(217-219)AAA>CAA	p.K73Q	UCP1_uc011chk.1_Missense_Mutation_p.K73Q	NM_021833	NP_068605	P25874	UCP1_HUMAN	uncoupling protein 1	73	Solcar 1.				brown fat cell differentiation|cellular lipid metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	all_hematologic(180;0.162)					CTGTAGAGTTTCATCCGCCCT	0.557													34	81					0	0	1	0	0	
RNF150	57484	broad.mit.edu	37	4	142053630	142053630	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:142053630C>T	uc003iio.1	-	1	987	c.333G>A	c.(331-333)CCG>CCA	p.P111P	RNF150_uc010iok.1_Silent_p.P111P|RNF150_uc003iip.1_Silent_p.P111P	NM_020724	NP_065775	Q9ULK6	RN150_HUMAN	ring finger protein 150 precursor	111	Extracellular (Potential).|PA.					integral to membrane	zinc ion binding			ovary(1)	1	all_hematologic(180;0.162)					TGCCGCGGGTCGGGGCGGCGA	0.667													4	7					0	0	1	0	0	
GAB1	2549	broad.mit.edu	37	4	144390300	144390300	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:144390300A>G	uc003ije.2	+	10	2402	c.2043A>G	c.(2041-2043)AGA>AGG	p.R681R	GAB1_uc003ijd.2_Silent_p.R711R|GAB1_uc011chq.1_Silent_p.R578R	NM_002039	NP_002030	Q13480	GAB1_HUMAN	GRB2-associated binding protein 1 isoform b	681					cell proliferation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			breast(2)|lung(1)|skin(1)	4	all_hematologic(180;0.158)					CAGATGGGAGACAGTCCACAG	0.438													14	45					0	0	1	0	0	
SMARCA5	8467	broad.mit.edu	37	4	144471198	144471198	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:144471198A>C	uc003ijg.2	+	23	3496	c.3034A>C	c.(3034-3036)AAC>CAC	p.N1012H		NM_003601	NP_003592	O60264	SMCA5_HUMAN	SWI/SNF-related matrix-associated	1012					CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex	ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding			skin(1)	1	all_hematologic(180;0.158)					TGAAAGAGAAAACATGGAACT	0.343													9	23					0	0	1	0	0	
HHIP	64399	broad.mit.edu	37	4	145573877	145573877	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:145573877G>T	uc003ijs.1	+	2	1055	c.400G>T	c.(400-402)GAC>TAC	p.D134Y	HHIP_uc003ijr.1_Missense_Mutation_p.D134Y	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	134						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		CTTGGAAAGAGACCTAGTACT	0.408													63	113					1.1794e-34	1.45376e-34	1	1	0	
HHIP	64399	broad.mit.edu	37	4	145629371	145629371	+	Silent	SNP	C	T	T	rs144126673		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:145629371C>T	uc003ijs.1	+	7	1864	c.1209C>T	c.(1207-1209)AAC>AAT	p.N403N		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	403						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		ACATGTGCAACGTGCCTTATT	0.488													22	55					0	0	1	0	0	
OTUD4	54726	broad.mit.edu	37	4	146059262	146059262	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:146059262C>T	uc003ika.3	-	21	2608	c.2470G>A	c.(2470-2472)GAA>AAA	p.E824K	OTUD4_uc003ijz.3_Missense_Mutation_p.E823K	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	888							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					AGATCCAATTCTCCTTTTTCA	0.413													16	40					0	0	1	0	0	
OTUD4	54726	broad.mit.edu	37	4	146071967	146071967	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:146071967T>G	uc003ika.3	-	12	1002	c.864A>C	c.(862-864)CAA>CAC	p.Q288H	OTUD4_uc003ijz.3_Missense_Mutation_p.Q287H	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	352							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					AATGGAAATTTTGTCCAGAAG	0.413													21	27					0	0	1	0	0	
OTUD4	54726	broad.mit.edu	37	4	146071986	146071986	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:146071986T>G	uc003ika.3	-	12	983	c.845A>C	c.(844-846)AAA>ACA	p.K282T	OTUD4_uc003ijz.3_Missense_Mutation_p.K281T	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	346							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					AGTGGAAGGTTTTTTCATCTT	0.433													19	28					0	0	1	0	0	
ZNF827	152485	broad.mit.edu	37	4	146807209	146807209	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:146807209C>T	uc003ikn.2	-	4	1416	c.1368G>A	c.(1366-1368)CAG>CAA	p.Q456Q	ZNF827_uc003ikm.2_Silent_p.Q456Q|ZNF827_uc010iox.2_Silent_p.Q106Q	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	456					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TCAGGAAGTGCTGATGGCAAC	0.562													14	36					0	0	1	0	0	
ZNF827	152485	broad.mit.edu	37	4	146859541	146859541	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:146859541C>T	uc003ikn.2	-	1	67	c.19G>A	c.(19-21)GAG>AAG	p.E7K	ZNF827_uc003ikm.2_Missense_Mutation_p.E7K|ZNF827_uc010iox.2_Missense_Mutation_p.E7K	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	7					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TTGGGCTGCTCCTGCTTCCTC	0.368													49	85					0	0	1	0	0	
TMEM184C	55751	broad.mit.edu	37	4	148539147	148539147	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:148539147A>G	uc003ila.3	+	1	609	c.40A>G	c.(40-42)ATT>GTT	p.I14V		NM_018241	NP_060711	Q9NVA4	T184C_HUMAN	transmembrane protein 184C	14						integral to membrane					0						GAGACAGTGGATTCGACCTTT	0.483											OREG0016353	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	58	118					0	0	1	0	0	
TMEM184C	55751	broad.mit.edu	37	4	148554919	148554919	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:148554919T>G	uc003ila.3	+	9	1452	c.883T>G	c.(883-885)TTT>GTT	p.F295V		NM_018241	NP_060711	Q9NVA4	T184C_HUMAN	transmembrane protein 184C	295	Helical; (Potential).					integral to membrane					0						CTCATAGGATTTTATTATCTG	0.363													39	85					0	0	1	0	0	
PRMT10	90826	broad.mit.edu	37	4	148582140	148582140	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:148582140A>G	uc003ilc.2	-	7	1145	c.1003T>C	c.(1003-1005)TTT>CTT	p.F335L	PRMT10_uc003ilb.2_5'UTR|PRMT10_uc003ild.2_Missense_Mutation_p.F222L	NM_138364	NP_612373	Q6P2P2	ANM10_HUMAN	protein arginine methyltransferase 10	335						cytoplasm	binding|protein methyltransferase activity			ovary(1)|central_nervous_system(1)	2						GGACTCTGAAATTTCACATTT	0.393													41	62					0	0	1	0	0	
NR3C2	4306	broad.mit.edu	37	4	149041348	149041348	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:149041348C>T	uc003ilj.3	-	7	2936	c.2602G>A	c.(2602-2604)GAA>AAA	p.E868K	NR3C2_uc003ilk.3_Missense_Mutation_p.E751K|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	868	Steroid-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	ATGGTGTATTCTTCAAAGGTG	0.448													28	53					0	0	1	0	0	
LRBA	987	broad.mit.edu	37	4	151356761	151356761	+	Missense_Mutation	SNP	G	A	A	rs139428686		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:151356761G>A	uc010ipj.2	-	47	7528	c.7054C>T	c.(7054-7056)CGT>TGT	p.R2352C	LRBA_uc010ipi.2_Intron|LRBA_uc003ils.3_Missense_Mutation_p.R242C|LRBA_uc003ilt.3_Missense_Mutation_p.R1000C|LRBA_uc003ilu.3_Missense_Mutation_p.R2341C	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2352	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					GAGGTATCACGCTGACTGTTT	0.363													36	91					0	0	1	0	0	
LRBA	987	broad.mit.edu	37	4	151773634	151773634	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:151773634A>G	uc010ipj.2	-	23	3702	c.3228T>C	c.(3226-3228)AGT>AGC	p.S1076S	LRBA_uc003ilt.3_5'Flank|LRBA_uc003ilu.3_Silent_p.S1076S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1076						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					CAGTTACTTCACTGACAGTCA	0.368													22	57					0	0	1	0	0	
LRBA	987	broad.mit.edu	37	4	151827471	151827471	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:151827471A>G	uc010ipj.2	-	12	2054	c.1580T>C	c.(1579-1581)GTA>GCA	p.V527A	LRBA_uc003ilu.3_Missense_Mutation_p.V527A|LRBA_uc010ipk.1_Missense_Mutation_p.V446A	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	527						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					ATATCCTATTACCAAGAAGCC	0.343													37	127					0	0	1	0	0	
LRBA	987	broad.mit.edu	37	4	151849672	151849672	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:151849672C>T	uc010ipj.2	-	4	1019	c.545G>A	c.(544-546)CGA>CAA	p.R182Q	LRBA_uc003ilu.3_Missense_Mutation_p.R182Q|LRBA_uc010ipk.1_Missense_Mutation_p.R101Q	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	182						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TTTTACCCATCGTCCTTTATC	0.368													9	26					0	0	1	0	0	
SH3D19	152503	broad.mit.edu	37	4	152086764	152086764	+	Missense_Mutation	SNP	C	T	T	rs145229595		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:152086764C>T	uc010ipl.1	-	8	1869	c.779G>A	c.(778-780)CGA>CAA	p.R260Q	SH3D19_uc003imb.2_Missense_Mutation_p.R38Q|SH3D19_uc003imc.2_Intron|SH3D19_uc003ime.2_Missense_Mutation_p.R260Q|SH3D19_uc010ipm.2_Missense_Mutation_p.R260Q	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	260	Pro-rich.				cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				GGCTGGAATTCGAATTACAGT	0.408													34	61					0	0	1	0	0	
PET112L	5188	broad.mit.edu	37	4	152679967	152679967	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:152679967G>T	uc003iml.2	-	2	296	c.284C>A	c.(283-285)TCT>TAT	p.S95Y	PET112L_uc003imm.3_Missense_Mutation_p.S95Y	NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	95						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	AGAAACCAAAGAATTTGGAGG	0.358													42	113					1.02591e-13	1.14875e-13	1	1	0	
FBXW7	55294	broad.mit.edu	37	4	153332915	153332915	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:153332915C>T	uc003ims.2	-	2	190	c.41G>A	c.(40-42)CGA>CAA	p.R14Q	FBXW7_uc011cii.1_Missense_Mutation_p.R14Q|FBXW7_uc003imt.2_Missense_Mutation_p.R14Q|FBXW7_uc003imu.2_Missense_Mutation_p.R14Q	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	14					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GCCTCCAGTTCGTCGTCTTTT	0.483			Mis|N|D|F		colorectal|endometrial|T-ALL								14	38					0	0	1	0	0	
TIGD4	201798	broad.mit.edu	37	4	153690733	153690733	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:153690733G>A	uc003imy.2	-	2	2206	c.1424C>T	c.(1423-1425)GCA>GTA	p.A475V		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	475					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					AGCAGTTATTGCCTCAGATTT	0.343													24	34					0	0	1	0	0	
TIGD4	201798	broad.mit.edu	37	4	153691842	153691842	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:153691842A>C	uc003imy.2	-	2	1097	c.315T>G	c.(313-315)GTT>GTG	p.V105V		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	105	HTH CENPB-type.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					TCGGACCATTAACTGGTACAT	0.383													55	122					0	0	1	0	0	
FHDC1	85462	broad.mit.edu	37	4	153896828	153896828	+	Silent	SNP	C	T	T	rs144649820		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:153896828C>T	uc003inf.2	+	11	2460	c.2385C>T	c.(2383-2385)GGC>GGT	p.G795G		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	795					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					GACCCAGAGGCGGGGACCCGG	0.612													48	86					0	0	1	0	0	
DCHS2	54798	broad.mit.edu	37	4	155242229	155242229	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:155242229A>C	uc003inw.2	-	14	2957	c.2957T>G	c.(2956-2958)TTT>TGT	p.F986C		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	986	Cadherin 8.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AACAATACTAAAATGTAACTT	0.333													35	46					0	0	1	0	0	
DCHS2	54798	broad.mit.edu	37	4	155298497	155298497	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:155298497C>T	uc003inw.2	-	3	334	c.334G>A	c.(334-336)GAC>AAC	p.D112N	DCHS2_uc003inx.2_Missense_Mutation_p.D718N	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	112	Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TCATGAGGGTCGATCCGGAAT	0.463													31	59					0	0	1	0	0	
FGA	2243	broad.mit.edu	37	4	155505592	155505592	+	Missense_Mutation	SNP	G	A	A	rs150073296	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:155505592G>A	uc003iod.1	-	6	2343	c.2285C>T	c.(2284-2286)GCG>GTG	p.A762V		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	762	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AGCATCACCCGCAGTGCCTTC	0.542													55	107					0	0	1	0	0	
RBM46	166863	broad.mit.edu	37	4	155717946	155717946	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:155717946A>C	uc003ioo.2	+	2	215	c.42A>C	c.(40-42)AAA>AAC	p.K14N	RBM46_uc011cim.1_Missense_Mutation_p.K14N|RBM46_uc003iop.1_Missense_Mutation_p.K14N	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	14							nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				GATGCAGTAAAGTTCGAACTG	0.353													13	39					0	0	1	0	0	
RBM46	166863	broad.mit.edu	37	4	155720683	155720683	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:155720683G>A	uc003ioo.2	+	4	1542	c.1369G>A	c.(1369-1371)GAA>AAA	p.E457K	RBM46_uc011cim.1_Missense_Mutation_p.E457K|RBM46_uc003iop.1_Missense_Mutation_p.E457K	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	457							nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				AGATGCAAAGGAACTGGCAGC	0.323													6	17					0	0	1	0	0	
MAP9	79884	broad.mit.edu	37	4	156281545	156281545	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:156281545T>G	uc003ios.2	-	7	1089	c.825A>C	c.(823-825)GAA>GAC	p.E275D	MAP9_uc011cin.1_Intron|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Missense_Mutation_p.E274D	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	275					cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		AATTATGGTTTTCAGTGATTT	0.328													16	29					0	0	1	0	0	
MAP9	79884	broad.mit.edu	37	4	156294541	156294541	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:156294541A>C	uc003ios.2	-	4	492	c.228T>G	c.(226-228)TTT>TTG	p.F76L	MAP9_uc011cin.1_Missense_Mutation_p.F76L|MAP9_uc010iqa.1_RNA|MAP9_uc003iot.1_Missense_Mutation_p.F76L|MAP9_uc010iqb.1_Missense_Mutation_p.F4L	NM_001039580	NP_001034669	Q49MG5	MAP9_HUMAN	aster-associated protein	76					cell division|mitosis	cytoplasm|microtubule|spindle				ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.143)		CTGATATATGAAAGTCATTCA	0.299													12	24					0	0	1	0	0	
GUCY1A3	2982	broad.mit.edu	37	4	156632398	156632398	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:156632398T>G	uc003iov.2	+	7	1617	c.1081T>G	c.(1081-1083)TCA>GCA	p.S361A	GUCY1A3_uc003iou.2_Missense_Mutation_p.S361A|GUCY1A3_uc010iqc.2_Missense_Mutation_p.S361A|GUCY1A3_uc003iow.2_Missense_Mutation_p.S361A|GUCY1A3_uc010iqd.2_Missense_Mutation_p.S360A|GUCY1A3_uc003iox.2_Missense_Mutation_p.S361A|GUCY1A3_uc003ioz.2_Missense_Mutation_p.S126A|GUCY1A3_uc003ioy.2_Missense_Mutation_p.S361A|GUCY1A3_uc010iqe.2_Missense_Mutation_p.S126A|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.S361A	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	361					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		GAAAAAATCTTCAAGGGTAAG	0.343													24	45					0	0	1	0	0	
GUCY1B3	2983	broad.mit.edu	37	4	156725805	156725805	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:156725805C>T	uc003ipc.2	+	12	1782	c.1615C>T	c.(1615-1617)CGA>TGA	p.R539*	GUCY1B3_uc011cio.1_Nonsense_Mutation_p.R561*|GUCY1B3_uc011cip.1_Nonsense_Mutation_p.R519*|GUCY1B3_uc003ipd.2_Nonsense_Mutation_p.R467*|GUCY1B3_uc010iqf.2_Nonsense_Mutation_p.R506*|GUCY1B3_uc010iqg.2_Nonsense_Mutation_p.R510*|GUCY1B3_uc011ciq.1_Nonsense_Mutation_p.R467*	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	539	Guanylate cyclase.				blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		GCGGATGCCTCGATACTGTCT	0.403													23	56					0	0	1	0	0	
CTSO	1519	broad.mit.edu	37	4	156847209	156847209	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:156847209G>A	uc003ipg.2	-	8	994	c.945C>T	c.(943-945)TCC>TCT	p.S315S		NM_001334	NP_001325	P43234	CATO_HUMAN	cathepsin O preproprotein	315					proteolysis	lysosome	cysteine-type endopeptidase activity				0	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.05)|Kidney(143;0.0627)|COAD - Colon adenocarcinoma(41;0.148)		TAGAAGAAACGGAATCTGCAA	0.303													7	25					0	0	1	0	0	
CTSO	1519	broad.mit.edu	37	4	156860584	156860584	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:156860584G>A	uc003ipg.2	-	4	540	c.491C>T	c.(490-492)TCG>TTG	p.S164L		NM_001334	NP_001325	P43234	CATO_HUMAN	cathepsin O preproprotein	164					proteolysis	lysosome	cysteine-type endopeptidase activity				0	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.05)|Kidney(143;0.0627)|COAD - Colon adenocarcinoma(41;0.148)		ATTATTATACGAACAGTCAAT	0.463													43	111					0	0	1	0	0	
GRIA2	2891	broad.mit.edu	37	4	158257880	158257880	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:158257880G>T	uc003ipm.3	+	11	2284	c.1825G>T	c.(1825-1827)GGA>TGA	p.G609*	GRIA2_uc011cit.1_Nonsense_Mutation_p.G562*|GRIA2_uc003ipl.3_Nonsense_Mutation_p.G609*|GRIA2_uc003ipk.3_Nonsense_Mutation_p.G562*|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	609	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TATGCAGCAAGGATGCGATAT	0.403													48	105					2.43277e-16	2.79395e-16	1	1	0	
GRIA2	2891	broad.mit.edu	37	4	158262455	158262455	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:158262455C>A	uc003ipm.3	+	12	2343	c.1884C>A	c.(1882-1884)TTC>TTA	p.F628L	GRIA2_uc011cit.1_Missense_Mutation_p.F581L|GRIA2_uc003ipl.3_Missense_Mutation_p.F628L|GRIA2_uc003ipk.3_Missense_Mutation_p.F581L|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	628	Helical; (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TGTGGTGGTTCTTTACCCTGA	0.423													64	113					2.59843e-28	3.15915e-28	1	1	0	
GRIA2	2891	broad.mit.edu	37	4	158262572	158262572	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:158262572T>G	uc003ipm.3	+	12	2460	c.2001T>G	c.(1999-2001)GCT>GCG	p.A667A	GRIA2_uc011cit.1_Silent_p.A620A|GRIA2_uc003ipl.3_Silent_p.A667A|GRIA2_uc003ipk.3_Silent_p.A620A|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	667	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	CAGAAATTGCTTATGGAACAT	0.408													68	104					0	0	1	0	0	
RXFP1	59350	broad.mit.edu	37	4	159567986	159567986	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:159567986C>T	uc003ipz.2	+	16	1471	c.1389C>T	c.(1387-1389)GGC>GGT	p.G463G	RXFP1_uc011cja.1_Silent_p.G358G|RXFP1_uc010iqo.2_Silent_p.G415G|RXFP1_uc011cjb.1_Silent_p.G361G|RXFP1_uc010iqk.2_Silent_p.G331G|RXFP1_uc011cjc.1_Silent_p.G382G|RXFP1_uc011cjd.1_Silent_p.G382G|RXFP1_uc010iql.2_Silent_p.G307G|RXFP1_uc011cje.1_Silent_p.G490G|RXFP1_uc010iqm.2_Silent_p.G430G|RXFP1_uc011cjf.1_Silent_p.G332G|RXFP1_uc010iqn.2_Silent_p.G408G	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	463	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		TGATCGGAGGCTTTGACCTAA	0.403													34	100					0	0	1	0	0	
FNIP2	57600	broad.mit.edu	37	4	159789335	159789335	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:159789335G>A	uc003iqe.3	+	13	1730	c.1547G>A	c.(1546-1548)CGA>CAA	p.R516Q		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	516					DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		TTAGTCCAGCGAATACTTTAT	0.493													50	84					0	0	1	0	0	
RAPGEF2	9693	broad.mit.edu	37	4	160235815	160235815	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:160235815G>A	uc003iqg.3	+	3	575	c.265G>A	c.(265-267)GAC>AAC	p.D89N		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	89					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		CGAAGACGACGACGATGAAGA	0.478													17	51					0	0	1	0	0	
RAPGEF2	9693	broad.mit.edu	37	4	160252923	160252923	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:160252923T>G	uc003iqg.3	+	9	1544	c.1234T>G	c.(1234-1236)TTT>GTT	p.F412V		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	412	PDZ.				cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		ATTTGGAATCTTTGTTGACAG	0.418													60	136					0	0	1	0	0	
FSTL5	56884	broad.mit.edu	37	4	162402200	162402200	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:162402200A>G	uc003iqh.2	-	13	2016	c.1580T>C	c.(1579-1581)GTT>GCT	p.V527A	FSTL5_uc003iqi.2_Missense_Mutation_p.V526A|FSTL5_uc010iqv.2_Missense_Mutation_p.V517A	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	527						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CTGCACATCAACAATAAGGAC	0.328													49	87					0	0	1	0	0	
FSTL5	56884	broad.mit.edu	37	4	162402250	162402250	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:162402250T>G	uc003iqh.2	-	13	1966	c.1530A>C	c.(1528-1530)AAA>AAC	p.K510N	FSTL5_uc003iqi.2_Missense_Mutation_p.K509N|FSTL5_uc010iqv.2_Missense_Mutation_p.K500N	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	510						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TGAACTTGTCTTTGACATTAA	0.383													11	159					0	0	1	0	0	
FSTL5	56884	broad.mit.edu	37	4	162463795	162463795	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:162463795C>T	uc003iqh.2	-	9	1502	c.1066G>A	c.(1066-1068)GTA>ATA	p.V356I	FSTL5_uc003iqi.2_Missense_Mutation_p.V355I|FSTL5_uc010iqv.2_Missense_Mutation_p.V355I	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	356	Ig-like 2.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CTGGCAGTTACCCCAGGCTCT	0.433													9	83					0	0	1	0	0	
NPY1R	4886	broad.mit.edu	37	4	164247294	164247294	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:164247294C>T	uc003iqm.1	-	2	679	c.413G>A	c.(412-414)CGA>CAA	p.R138Q	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	138	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CAGCTGATGTCGTTCCACAGC	0.443													55	76					0	0	1	0	0	
TKTL2	84076	broad.mit.edu	37	4	164393208	164393208	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:164393208A>C	uc003iqp.3	-	1	1840	c.1679T>G	c.(1678-1680)GTT>GGT	p.V560G		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	560						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CACTGTGATAACTCGGCCGCC	0.517													33	100					0	0	1	0	0	
TKTL2	84076	broad.mit.edu	37	4	164394533	164394533	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:164394533A>C	uc003iqp.3	-	1	515	c.354T>G	c.(352-354)TTT>TTG	p.F118L		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	118						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CCACGTCAACAAACGGCAATC	0.537													20	57					0	0	1	0	0	
TRIM61	391712	broad.mit.edu	37	4	165891030	165891030	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:165891030A>G	uc003iqw.2	-	3	736	c.125T>C	c.(124-126)ATG>ACG	p.M42T		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	42	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		CTTCCAGGACATAATGATGCA	0.488													19	74					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	4	165981347	165981347	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:165981347T>G	uc011cjl.1	+	1	1048	c.1048T>G	c.(1048-1050)TTC>GTC	p.F350V		NM_001105575	NP_001099045			tripartite motif-containing 75																		TGGCAGGCATTTCTGGGAGAT	0.448													55	141					0	0	1	0	0	
TMEM192	201931	broad.mit.edu	37	4	166021968	166021968	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:166021968C>T	uc003iqz.3	-	3	350	c.251G>A	c.(250-252)GGA>GAA	p.G84E		NM_001100389	NP_001093859	Q8IY95	TM192_HUMAN	transmembrane protein 192	84	Lumenal (Potential).					Golgi apparatus|integral to membrane|late endosome|lysosomal membrane|nucleus				skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0926)		TGTGTAATTTCCTGGGCACTT	0.398													14	54					0	0	1	0	0	
KLHL2	11275	broad.mit.edu	37	4	166141156	166141156	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:166141156A>G	uc003irb.2	+	2	356	c.97A>G	c.(97-99)ACA>GCA	p.T33A	KLHL2_uc011cjm.1_Missense_Mutation_p.T37A|KLHL2_uc003irc.2_5'UTR	NM_007246	NP_009177	O95198	KLHL2_HUMAN	kelch-like 2, Mayven isoform 1	33					intracellular protein transport	actin cytoskeleton|cytoplasm	actin binding|transporter activity				0	all_hematologic(180;0.221)			GBM - Glioblastoma multiforme(119;2.94e-27)|COAD - Colon adenocarcinoma(41;1.4e-05)|Kidney(143;4.95e-05)|KIRC - Kidney renal clear cell carcinoma(143;0.000927)		CTGCCCAGTGACAGTGAATCC	0.373													14	54					0	0	1	0	0	
KLHL2	11275	broad.mit.edu	37	4	166232625	166232625	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:166232625C>T	uc003irb.2	+	11	1506	c.1247C>T	c.(1246-1248)TCT>TTT	p.S416F	KLHL2_uc011cjm.1_Missense_Mutation_p.S420F|KLHL2_uc003irc.2_Missense_Mutation_p.S328F|KLHL2_uc010ira.2_Missense_Mutation_p.S69F	NM_007246	NP_009177	O95198	KLHL2_HUMAN	kelch-like 2, Mayven isoform 1	416	Kelch 3.				intracellular protein transport	actin cytoskeleton|cytoplasm	actin binding|transporter activity				0	all_hematologic(180;0.221)			GBM - Glioblastoma multiforme(119;2.94e-27)|COAD - Colon adenocarcinoma(41;1.4e-05)|Kidney(143;4.95e-05)|KIRC - Kidney renal clear cell carcinoma(143;0.000927)		GGTTTGTCATCTGTGGAAGCA	0.368													52	97					0	0	1	0	0	
CPE	1363	broad.mit.edu	37	4	166403472	166403472	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:166403472G>T	uc003irg.3	+	4	1028	c.751G>T	c.(751-753)GAC>TAC	p.D251Y		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	251					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCATGGAGGAGACCTTGTGGC	0.403													40	70					6.45866e-13	7.18389e-13	1	1	0	
TLL1	7092	broad.mit.edu	37	4	166999181	166999181	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:166999181T>G	uc003irh.1	+	18	3088	c.2441T>G	c.(2440-2442)TTA>TGA	p.L814*	TLL1_uc011cjn.1_Nonsense_Mutation_p.L837*|TLL1_uc011cjo.1_Nonsense_Mutation_p.L638*	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	814	CUB 4.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		CGAATCAAATTAGTAAGTGAG	0.453													20	34					0	0	1	0	0	
DDX60	55601	broad.mit.edu	37	4	169194428	169194428	+	Splice_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:169194428A>G	uc003irp.2	-	18	2866	c.2574_splice	c.e18+1	p.Q858_splice		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60								ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AAAATACCCTACCTGACAGTT	0.353													22	39					0	0	1	0	0	
DDX60	55601	broad.mit.edu	37	4	169197322	169197322	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:169197322C>T	uc003irp.2	-	15	2281	c.1989G>A	c.(1987-1989)ACG>ACA	p.T663T		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	663							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTAAATCTTTCGTGGTTTTAC	0.328													13	33					0	0	1	0	0	
DDX60L	91351	broad.mit.edu	37	4	169305863	169305863	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:169305863A>G	uc003irq.3	-	30	4237	c.4016T>C	c.(4015-4017)GTT>GCT	p.V1339A		NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1339	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CAGCTCAGGAACACTGGATGC	0.498													16	20					0	0	1	0	0	
NEK1	4750	broad.mit.edu	37	4	170428878	170428878	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:170428878G>A	uc003isb.1	-	20	2307	c.1815C>T	c.(1813-1815)ATC>ATT	p.I605I	NEK1_uc003isc.1_Silent_p.I561I|NEK1_uc003isd.1_Silent_p.I633I|NEK1_uc003ise.1_Silent_p.I589I|NEK1_uc003isf.1_Silent_p.I536I	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	605					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		TCAGTGATTCGATTTTTTTGC	0.338													13	30					0	0	1	0	0	
MFAP3L	9848	broad.mit.edu	37	4	170913428	170913428	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:170913428T>C	uc003isp.3	-	3	509	c.331A>G	c.(331-333)AAC>GAC	p.N111D	MFAP3L_uc003isn.3_Missense_Mutation_p.N8D	NM_021647	NP_067679	O75121	MFA3L_HUMAN	microfibrillar-associated protein 3-like isoform	111	Extracellular (Potential).|Ig-like C2-type.					integral to membrane|plasma membrane				ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0201)|LUSC - Lung squamous cell carcinoma(193;0.116)		TTGGTGATGTTCAGGAGGCCG	0.498													29	82					0	0	1	0	0	
GALNTL6	442117	broad.mit.edu	37	4	173930333	173930333	+	Missense_Mutation	SNP	G	A	A	rs146923140		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:173930333G>A	uc003isv.2	+	11	2112	c.1376G>A	c.(1375-1377)CGA>CAA	p.R459Q		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	459	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						CCACAGATCCGAAATGTGGCA	0.443													19	67					0	0	1	0	0	
SAP30	8819	broad.mit.edu	37	4	174294593	174294593	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:174294593G>A	uc003itd.2	+	2	609	c.368G>A	c.(367-369)CGA>CAA	p.R123Q		NM_003864	NP_003855	O75446	SAP30_HUMAN	Sin3A-associated protein, 30kDa	123	Interaction with NCOR1 (By similarity).				transcription, DNA-dependent	histone deacetylase complex	DNA binding|metal ion binding|protein binding|transcription corepressor activity			ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.15e-17)|Epithelial(43;4.33e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.62e-09)|STAD - Stomach adenocarcinoma(60;0.00278)|GBM - Glioblastoma multiforme(59;0.00659)|LUSC - Lung squamous cell carcinoma(193;0.0919)		CAGAGTGTTCGAAACAGAAGA	0.348													36	75					0	0	1	0	0	
SAP30	8819	broad.mit.edu	37	4	174298430	174298430	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:174298430G>T	uc003itd.2	+	4	856	c.615G>T	c.(613-615)AAG>AAT	p.K205N		NM_003864	NP_003855	O75446	SAP30_HUMAN	Sin3A-associated protein, 30kDa	205	Interaction with SIN3A (By similarity).				transcription, DNA-dependent	histone deacetylase complex	DNA binding|metal ion binding|protein binding|transcription corepressor activity			ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.15e-17)|Epithelial(43;4.33e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.62e-09)|STAD - Stomach adenocarcinoma(60;0.00278)|GBM - Glioblastoma multiforme(59;0.00659)|LUSC - Lung squamous cell carcinoma(193;0.0919)		ACTCAGTGAAGAATGACAAGA	0.343													39	93					3.78316e-11	4.13718e-11	1	1	0	
WDR17	116966	broad.mit.edu	37	4	177067147	177067147	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:177067147G>A	uc003iuj.2	+	13	1759	c.1603G>A	c.(1603-1605)GAC>AAC	p.D535N	WDR17_uc003iuk.2_Missense_Mutation_p.D511N|WDR17_uc003ium.3_Missense_Mutation_p.D511N|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	535	WD 9.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		ATATTTCAGAGACATGATAGC	0.313													8	43					0	0	1	0	0	
SPATA4	132851	broad.mit.edu	37	4	177105979	177105979	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:177105979A>C	uc003iuo.1	-	6	979	c.870T>G	c.(868-870)TCT>TCG	p.S290S		NM_144644	NP_653245	Q8NEY3	SPAT4_HUMAN	spermatogenesis associated 4	290					apoptosis|spermatogenesis						0		Breast(14;0.0011)|Prostate(90;0.0129)|Melanoma(52;0.0133)|Renal(120;0.0376)|all_hematologic(60;0.124)		all cancers(43;2.9e-20)|Epithelial(43;1.99e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.58e-09)|GBM - Glioblastoma multiforme(59;0.000162)|STAD - Stomach adenocarcinoma(60;0.000543)|LUSC - Lung squamous cell carcinoma(193;0.096)		CAGAGTAATAAGAATGTTGTC	0.373													28	70					0	0	1	0	0	
SPATA4	132851	broad.mit.edu	37	4	177109304	177109304	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:177109304T>G	uc003iuo.1	-	5	880	c.771A>C	c.(769-771)TTA>TTC	p.L257F		NM_144644	NP_653245	Q8NEY3	SPAT4_HUMAN	spermatogenesis associated 4	257					apoptosis|spermatogenesis						0		Breast(14;0.0011)|Prostate(90;0.0129)|Melanoma(52;0.0133)|Renal(120;0.0376)|all_hematologic(60;0.124)		all cancers(43;2.9e-20)|Epithelial(43;1.99e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.58e-09)|GBM - Glioblastoma multiforme(59;0.000162)|STAD - Stomach adenocarcinoma(60;0.000543)|LUSC - Lung squamous cell carcinoma(193;0.096)		TTTTAACTTTTAAATTATATC	0.338													20	42					0	0	1	0	0	
SPATA4	132851	broad.mit.edu	37	4	177113869	177113869	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:177113869G>A	uc003iuo.1	-	4	706	c.597C>T	c.(595-597)AGC>AGT	p.S199S		NM_144644	NP_653245	Q8NEY3	SPAT4_HUMAN	spermatogenesis associated 4	199					apoptosis|spermatogenesis						0		Breast(14;0.0011)|Prostate(90;0.0129)|Melanoma(52;0.0133)|Renal(120;0.0376)|all_hematologic(60;0.124)		all cancers(43;2.9e-20)|Epithelial(43;1.99e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.58e-09)|GBM - Glioblastoma multiforme(59;0.000162)|STAD - Stomach adenocarcinoma(60;0.000543)|LUSC - Lung squamous cell carcinoma(193;0.096)		TGTTGGGATTGCTTAGTAATT	0.373													18	44					0	0	1	0	0	
ASB5	140458	broad.mit.edu	37	4	177136836	177136836	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:177136836C>T	uc003iuq.1	-	7	921	c.905G>A	c.(904-906)CGA>CAA	p.R302Q	ASB5_uc003iup.1_Missense_Mutation_p.R249Q	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	302	SOCS box.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		TATGTAGCTTCGGATACAGAG	0.353													18	31					0	0	1	0	0	
SPCS3	60559	broad.mit.edu	37	4	177243323	177243323	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:177243323A>C	uc003iur.3	+	2	284	c.146A>C	c.(145-147)AAA>ACA	p.K49T		NM_021928	NP_068747	P61009	SPCS3_HUMAN	signal peptidase complex subunit 3	49	Lumenal (Potential).				energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	integral to membrane|microsome|signal peptidase complex	peptidase activity			ovary(1)	1		Breast(14;0.0011)|Prostate(90;0.0129)|Melanoma(52;0.0133)|Renal(120;0.0376)|all_hematologic(60;0.124)		all cancers(43;2.43e-19)|Epithelial(43;1.84e-16)|OV - Ovarian serous cystadenocarcinoma(60;4.51e-09)|GBM - Glioblastoma multiforme(59;0.000142)|STAD - Stomach adenocarcinoma(60;0.00279)|LUSC - Lung squamous cell carcinoma(193;0.0319)		ATTCCTAGAAAAAATGTAGAA	0.333													17	30					0	0	1	0	0	
VEGFC	7424	broad.mit.edu	37	4	177649045	177649045	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:177649045C>T	uc003ius.1	-	3	869	c.439G>A	c.(439-441)GCG>ACG	p.A147T		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	147					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		GTGTTTGTCGCGACTCCAAAC	0.493													28	69					0	0	1	0	0	
VEGFC	7424	broad.mit.edu	37	4	177650885	177650885	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:177650885C>A	uc003ius.1	-	2	593	c.163G>T	c.(163-165)GAT>TAT	p.D55Y		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	55					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		TCCTCCAGATCTTTGCTTGCA	0.393													16	46					5.01169e-05	5.14484e-05	1	1	0	
AGA	175	broad.mit.edu	37	4	178354419	178354419	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:178354419A>C	uc003iuu.1	-	8	951	c.889T>G	c.(889-891)TTT>GTT	p.F297V	AGA_uc010irt.1_Intron	NM_000027	NP_000018	P20933	ASPG_HUMAN	aspartylglucosaminidase precursor	297					asparagine catabolic process via L-aspartate|protein deglycosylation|protein maturation	endoplasmic reticulum|intermediate filament cytoskeleton|lysosome|microtubule cytoskeleton	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0		all_lung(41;1.27e-09)|Lung NSC(41;1.1e-08)|Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Hepatocellular(41;0.148)|all_neural(102;0.164)|Colorectal(36;0.245)		all cancers(43;1.37e-22)|Epithelial(43;3.86e-20)|OV - Ovarian serous cystadenocarcinoma(60;3.8e-11)|Colorectal(24;6.98e-05)|GBM - Glioblastoma multiforme(59;0.000362)|COAD - Colon adenocarcinoma(29;0.000462)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0328)|READ - Rectum adenocarcinoma(43;0.163)		AATTCTGGAAAATGCTTCTGG	0.383													63	126					0	0	1	0	0	
ODZ3	55714	broad.mit.edu	37	4	183714517	183714517	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:183714517G>T	uc003ivd.1	+	25	6729	c.6692G>T	c.(6691-6693)GGC>GTC	p.G2231V		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2231	YD 22.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CGTTATGACGGCCTGGGAAGG	0.463													24	37					1.64293e-13	1.8379e-13	1	1	0	
WWC2	80014	broad.mit.edu	37	4	184205450	184205450	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:184205450C>T	uc010irx.2	+	19	3137	c.2955C>T	c.(2953-2955)AGC>AGT	p.S985S	WWC2_uc003ivk.3_Silent_p.S780S|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Silent_p.S667S|WWC2_uc003ivn.3_Silent_p.S500S|WWC2_uc010irz.2_Silent_p.S326S|WWC2_uc003ivo.3_Silent_p.S113S	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	985										ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		AGCGCAGCAGCCTGAGCTCTA	0.488													29	68					0	0	1	0	0	
CLDN22	53842	broad.mit.edu	37	4	184240709	184240709	+	Nonstop_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:184240709T>G	uc010isa.1	-	1	1219	c.663A>C	c.(661-663)TAA>TAC	p.*221Y	WWC2_uc010irx.2_3'UTR|WWC2_uc003ivk.3_3'UTR|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_3'UTR|WWC2_uc003ivn.3_3'UTR|WWC2_uc010irz.2_3'UTR|WWC2_uc003ivo.3_3'UTR	NM_001111319	NP_001104789	Q8N7P3	CLD22_HUMAN	claudin 22	221					calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.0172)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|Esophageal squamous(56;0.176)		all cancers(43;4.1e-26)|Epithelial(43;6.45e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|Colorectal(24;5.87e-06)|GBM - Glioblastoma multiforme(59;6.5e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		CCTTTCTGGCTTAGTGTTTCA	0.507													90	217					0	0	1	0	0	
STOX2	56977	broad.mit.edu	37	4	184931772	184931772	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:184931772A>G	uc003ivz.1	+	3	3216	c.1781A>G	c.(1780-1782)AAA>AGA	p.K594R	STOX2_uc003iwa.1_Missense_Mutation_p.K283R	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	594					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		TGTCCAACAAAAACAGCCACA	0.522													22	37					0	0	1	0	0	
IRF2	3660	broad.mit.edu	37	4	185340688	185340688	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:185340688G>A	uc003iwf.3	-	3	322	c.122C>T	c.(121-123)GCG>GTG	p.A41V		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	41	IRF tryptophan pentad repeat.				blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		ATGTCTAGCCGCATGCATCCA	0.423													29	86					0	0	1	0	0	
HELT	391723	broad.mit.edu	37	4	185940639	185940639	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:185940639G>A	uc011ckq.1	+	2	258	c.258G>A	c.(256-258)GCG>GCA	p.A86A	HELT_uc011cko.1_Silent_p.A42A|HELT_uc003ixa.3_Silent_p.A42A|HELT_uc011ckp.1_5'UTR	NM_001029887	NP_001025058	A6NFD8	HELT_HUMAN	HES/HEY-like transcription factor	86	Helix-loop-helix motif.						DNA binding				0		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;8.92e-26)|Epithelial(43;3.02e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-11)|Colorectal(24;4.79e-05)|BRCA - Breast invasive adenocarcinoma(30;7.72e-05)|GBM - Glioblastoma multiforme(59;0.000274)|COAD - Colon adenocarcinoma(29;0.000362)|STAD - Stomach adenocarcinoma(60;0.000756)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		TGGCCTTGGCGAAGCAGGTAA	0.632													5	11					0	0	1	0	0	
SNX25	83891	broad.mit.edu	37	4	186244746	186244746	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:186244746C>A	uc003ixh.2	+	9	1238	c.1049C>A	c.(1048-1050)TCT>TAT	p.S350Y	SNX25_uc010ish.2_Missense_Mutation_p.S121Y|SNX25_uc003ixi.2_Translation_Start_Site	NM_031953	NP_114159	Q9H3E2	SNX25_HUMAN	sorting nexin 25	350	RGS.				cell communication|protein transport	endosome membrane	phosphatidylinositol binding|signal transducer activity			ovary(2)|breast(2)|pancreas(1)	5		all_lung(41;1.03e-13)|Lung NSC(41;2.5e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;2.13e-24)|Epithelial(43;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.6e-11)|BRCA - Breast invasive adenocarcinoma(30;0.00013)|Colorectal(24;0.000165)|GBM - Glioblastoma multiforme(59;0.000357)|COAD - Colon adenocarcinoma(29;0.000887)|STAD - Stomach adenocarcinoma(60;0.00118)|LUSC - Lung squamous cell carcinoma(40;0.0129)|READ - Rectum adenocarcinoma(43;0.228)		AAAGAAATATCTGTGGAAAAA	0.318													25	62					4.7796e-09	5.11423e-09	1	1	0	
SNX25	83891	broad.mit.edu	37	4	186272701	186272701	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:186272701A>C	uc003ixh.2	+	14	2101	c.1912A>C	c.(1912-1914)AAT>CAT	p.N638H	SNX25_uc010ish.2_Intron|SNX25_uc003ixi.2_Missense_Mutation_p.N142H	NM_031953	NP_114159	Q9H3E2	SNX25_HUMAN	sorting nexin 25	638					cell communication|protein transport	endosome membrane	phosphatidylinositol binding|signal transducer activity			ovary(2)|breast(2)|pancreas(1)	5		all_lung(41;1.03e-13)|Lung NSC(41;2.5e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;2.13e-24)|Epithelial(43;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.6e-11)|BRCA - Breast invasive adenocarcinoma(30;0.00013)|Colorectal(24;0.000165)|GBM - Glioblastoma multiforme(59;0.000357)|COAD - Colon adenocarcinoma(29;0.000887)|STAD - Stomach adenocarcinoma(60;0.00118)|LUSC - Lung squamous cell carcinoma(40;0.0129)|READ - Rectum adenocarcinoma(43;0.228)		GGGGAAAAAAAATTCTTTTTC	0.438													34	65					0	0	1	0	0	
SNX25	83891	broad.mit.edu	37	4	186278858	186278858	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:186278858T>G	uc003ixh.2	+	16	2315	c.2126T>G	c.(2125-2127)CTC>CGC	p.L709R	SNX25_uc010ish.2_Missense_Mutation_p.L425R|SNX25_uc003ixi.2_Missense_Mutation_p.L213R	NM_031953	NP_114159	Q9H3E2	SNX25_HUMAN	sorting nexin 25	709					cell communication|protein transport	endosome membrane	phosphatidylinositol binding|signal transducer activity			ovary(2)|breast(2)|pancreas(1)	5		all_lung(41;1.03e-13)|Lung NSC(41;2.5e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;2.13e-24)|Epithelial(43;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.6e-11)|BRCA - Breast invasive adenocarcinoma(30;0.00013)|Colorectal(24;0.000165)|GBM - Glioblastoma multiforme(59;0.000357)|COAD - Colon adenocarcinoma(29;0.000887)|STAD - Stomach adenocarcinoma(60;0.00118)|LUSC - Lung squamous cell carcinoma(40;0.0129)|READ - Rectum adenocarcinoma(43;0.228)		TTAATTGCCCTCGTTCAGGTC	0.378													25	62					0	0	1	0	0	
LRP2BP	55805	broad.mit.edu	37	4	186288369	186288369	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:186288369C>A	uc003ixj.1	-	8	1821	c.1009G>T	c.(1009-1011)GAA>TAA	p.E337*	SNX25_uc003ixi.2_Intron|LRP2BP_uc003ixk.1_Nonsense_Mutation_p.E311*|LRP2BP_uc011ckr.1_Nonsense_Mutation_p.E337*	NM_018409	NP_060879	Q9P2M1	LR2BP_HUMAN	LRP2 binding protein	337						cytoplasm	protein binding				0		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;0.00109)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;2.14e-25)|Epithelial(43;1.55e-22)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-11)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.000132)|STAD - Stomach adenocarcinoma(60;0.000766)|Colorectal(24;0.00116)|LUSC - Lung squamous cell carcinoma(40;0.00904)|COAD - Colon adenocarcinoma(29;0.0101)|READ - Rectum adenocarcinoma(43;0.161)		GAGTGAAGTTCATCTGCCAAT	0.313													48	102					1.46357e-32	1.79619e-32	1	1	0	
CCDC110	256309	broad.mit.edu	37	4	186380271	186380271	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:186380271A>C	uc003ixu.3	-	6	1546	c.1470T>G	c.(1468-1470)ATT>ATG	p.I490M	CCDC110_uc003ixv.3_Missense_Mutation_p.I453M|CCDC110_uc011ckt.1_Missense_Mutation_p.I490M	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	490	Potential.					nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		ACTTAGACTGAATAGTACTCT	0.279													9	46					0	0	1	0	0	
CCDC110	256309	broad.mit.edu	37	4	186381000	186381000	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:186381000T>G	uc003ixu.3	-	6	817	c.741A>C	c.(739-741)CAA>CAC	p.Q247H	CCDC110_uc003ixv.3_Missense_Mutation_p.Q210H|CCDC110_uc011ckt.1_Missense_Mutation_p.Q247H	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	247						nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		CTTCTTTCATTTGTTTGATAG	0.348													46	88					0	0	1	0	0	
SORBS2	8470	broad.mit.edu	37	4	186536109	186536109	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:186536109A>C	uc003iyl.2	-	17	3617	c.2759T>G	c.(2758-2760)CTC>CGC	p.L920R	SORBS2_uc003iyh.2_Missense_Mutation_p.L644R|SORBS2_uc011ckw.1_Missense_Mutation_p.L481R|SORBS2_uc003iyi.2_Missense_Mutation_p.L551R|SORBS2_uc011ckx.1_Missense_Mutation_p.L486R|SORBS2_uc003iyk.2_Missense_Mutation_p.L464R|SORBS2_uc003iym.2_Missense_Mutation_p.L1020R|SORBS2_uc003iyn.1_Missense_Mutation_p.L511R|SORBS2_uc011cku.1_Missense_Mutation_p.L312R|SORBS2_uc011ckv.1_Missense_Mutation_p.L824R|SORBS2_uc003iyd.2_Missense_Mutation_p.L619R|SORBS2_uc003iye.2_Missense_Mutation_p.L493R|SORBS2_uc003iya.2_Missense_Mutation_p.L440R|SORBS2_uc003iyb.2_Missense_Mutation_p.L393R|SORBS2_uc003iyc.2_Missense_Mutation_p.L373R|SORBS2_uc003iyg.2_Missense_Mutation_p.L1034R|SORBS2_uc003iyf.2_Missense_Mutation_p.L456R|SORBS2_uc003iyo.1_Missense_Mutation_p.L369R	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	920	SH3 1.					actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		AGGAGGTGTGAGTTTCTATGA	0.493													29	75					0	0	1	0	0	
TLR3	7098	broad.mit.edu	37	4	187003649	187003649	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187003649G>A	uc003iyq.2	+	4	910	c.809G>A	c.(808-810)GGA>GAA	p.G270E	TLR3_uc011ckz.1_5'UTR|TLR3_uc003iyr.2_5'UTR	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	270	LRR 9.|Lumenal (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		ACTTTCTTGGGACTAAAGTGG	0.413													31	66					0	0	1	0	0	
FAM149A	25854	broad.mit.edu	37	4	187088351	187088351	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187088351G>A	uc003iyt.3	+	13	1889	c.1310G>A	c.(1309-1311)CGA>CAA	p.R437Q	FAM149A_uc011cla.1_Missense_Mutation_p.R437Q|FAM149A_uc003iyu.3_Missense_Mutation_p.R437Q|FAM149A_uc010isl.2_Missense_Mutation_p.R437Q|FAM149A_uc011clb.1_Missense_Mutation_p.R436Q	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	728										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		GATACGCCTCGAAAAAGTTCA	0.353													52	92					0	0	1	0	0	
MTNR1A	4543	broad.mit.edu	37	4	187455635	187455635	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187455635C>T	uc003izd.1	-	2	279	c.261G>A	c.(259-261)TCG>TCA	p.S87S		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	87	Extracellular (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	TGTTAAATATCGACATCAGCA	0.507													27	55					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187517847	187517847	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187517847C>T	uc003izf.2	-	25	13035	c.12847G>A	c.(12847-12849)GAA>AAA	p.E4283K	FAT1_uc010isn.2_5'Flank|FAT1_uc003ize.2_Missense_Mutation_p.E174K	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4283	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GTGCTGAATTCGGGATGCTCT	0.557										HNSCC(5;0.00058)			17	24					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187524488	187524488	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187524488A>C	uc003izf.2	-	19	11380	c.11192T>G	c.(11191-11193)CTG>CGG	p.L3731R		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3731	Extracellular (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GAATACATTCAGTATCCTAAC	0.453										HNSCC(5;0.00058)			17	21					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187524871	187524871	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187524871T>G	uc003izf.2	-	19	10997	c.10809A>C	c.(10807-10809)AAA>AAC	p.K3603N		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3603	Extracellular (Potential).|Cadherin 33.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TGTCTAGCTTTTTGTGTGCTA	0.498										HNSCC(5;0.00058)			26	32					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187532563	187532563	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187532563T>G	uc003izf.2	-	14	10018	c.9830A>C	c.(9829-9831)AAA>ACA	p.K3277T		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3277	Extracellular (Potential).|Cadherin 30.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TATGCTGAATTTCCCATGTTC	0.388										HNSCC(5;0.00058)			16	28					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187541629	187541629	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187541629C>T	uc003izf.2	-	10	6299	c.6111G>A	c.(6109-6111)ACG>ACA	p.T2037T		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2037	Extracellular (Potential).|Cadherin 18.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GATCGAAGGGCGTGCCAGTGG	0.488										HNSCC(5;0.00058)			76	190					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187542860	187542860	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187542860C>T	uc003izf.2	-	10	5068	c.4880G>A	c.(4879-4881)CGA>CAA	p.R1627Q		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1627	Extracellular (Potential).|Cadherin 14.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TTGGTTACTTCGATCTAATTC	0.368										HNSCC(5;0.00058)			11	21					0	0	1	0	0	
FAT1	2195	broad.mit.edu	37	4	187549793	187549793	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:187549793T>G	uc003izf.2	-	8	4636	c.4448A>C	c.(4447-4449)CAG>CCG	p.Q1483P		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1483	Extracellular (Potential).|Cadherin 13.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TTTCTCATCCTGATCCACAGC	0.408										HNSCC(5;0.00058)			18	54					0	0	1	0	0	
TRIML2	205860	broad.mit.edu	37	4	189012796	189012796	+	Missense_Mutation	SNP	C	T	T	rs150210586		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:189012796C>T	uc003izl.2	-	7	931	c.895G>A	c.(895-897)GAG>AAG	p.E299K	TRIML2_uc003izj.1_Missense_Mutation_p.E127K|TRIML2_uc003izk.1_Missense_Mutation_p.E107K|TRIML2_uc011cle.1_Missense_Mutation_p.E374K	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	299	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		AGAGTCCACTCGGTCCCCATC	0.577													57	156					0	0	1	0	0	
PLEKHG4B	153478	broad.mit.edu	37	5	156256	156256	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:156256C>T	uc003jak.2	+	8	1261	c.1211C>T	c.(1210-1212)TCT>TTT	p.S404F		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	404					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CTGCTTGTGTCTCTCAGGCTG	0.592													27	35					0	0	1	0	0	
TERT	7015	broad.mit.edu	37	5	1272354	1272354	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:1272354G>A	uc003jcb.1	-	7	2386	c.2328C>T	c.(2326-2328)TTC>TTT	p.F776F	TERT_uc003jbz.1_Intron|TERT_uc003jca.1_Silent_p.F764F|TERT_uc003jcc.1_Silent_p.F776F|TERT_uc003jcd.1_Intron|TERT_uc003jce.1_Intron	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	776	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGTGAGCCACGAACTGTCGCA	0.657									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				8	17					0	0	1	0	0	
CLPTM1L	81037	broad.mit.edu	37	5	1334416	1334416	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:1334416G>A	uc003jch.2	-	7	925	c.879C>T	c.(877-879)GTC>GTT	p.V293V	CLPTM1L_uc003jcg.2_Silent_p.V160V	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	293	Helical; (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		GGAACGCTGCGACAAAGAAGG	0.547													14	34					0	0	1	0	0	
LPCAT1	79888	broad.mit.edu	37	5	1474721	1474721	+	Missense_Mutation	SNP	C	T	T	rs138573338		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:1474721C>T	uc003jcm.2	-	10	1096	c.979G>A	c.(979-981)GCT>ACT	p.A327T		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	327	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		CAAGTGTCAGCGGGGAGACGG	0.607													16	20					0	0	1	0	0	
ADAMTS16	170690	broad.mit.edu	37	5	5239839	5239839	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:5239839G>A	uc003jdl.2	+	16	2462	c.2324G>A	c.(2323-2325)CGC>CAC	p.R775H	ADAMTS16_uc003jdk.1_Missense_Mutation_p.R775H	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	775	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CGGAGTATCCGCATCTATGAA	0.502													50	91					0	0	1	0	0	
KIAA0947	23379	broad.mit.edu	37	5	5460963	5460963	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:5460963C>T	uc003jdm.3	+	13	1738	c.1516C>T	c.(1516-1518)CGA>TGA	p.R506*		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	506										ovary(1)|central_nervous_system(1)	2						TAAACTCACTCGAGGTCTATG	0.448													41	66					0	0	1	0	0	
KIAA0947	23379	broad.mit.edu	37	5	5461150	5461150	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:5461150G>A	uc003jdm.3	+	13	1925	c.1703G>A	c.(1702-1704)CGA>CAA	p.R568Q		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	568										ovary(1)|central_nervous_system(1)	2						AAGTGGACACGAATTAATGAA	0.388													72	122					0	0	1	0	0	
KIAA0947	23379	broad.mit.edu	37	5	5461831	5461831	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:5461831A>G	uc003jdm.3	+	13	2606	c.2384A>G	c.(2383-2385)GAT>GGT	p.D795G		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	795										ovary(1)|central_nervous_system(1)	2						CACCATAGTGATTTATTAAGG	0.388													11	16					0	0	1	0	0	
NSUN2	54888	broad.mit.edu	37	5	6623341	6623341	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:6623341G>A	uc003jdu.2	-	5	588	c.523C>T	c.(523-525)CGG>TGG	p.R175W	NSUN2_uc003jdt.2_5'Flank|NSUN2_uc011cmk.1_Missense_Mutation_p.R140W|NSUN2_uc003jdv.2_5'UTR	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	175						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						TGATGAGGCCGCACGTTGAGG	0.408													29	50					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	5	7303698	7303698	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:7303698G>A	uc003jdy.1	-	6		c.574C>T								Homo sapiens cDNA FLJ42124 fis, clone TESTI2009477, weakly  similar to TRICHOHYALIN.																		GAGAGAGCCCGCTGTAACTCT	0.582													4	5					0	0	1	0	0	
ADCY2	108	broad.mit.edu	37	5	7789775	7789775	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:7789775A>G	uc003jdz.1	+	20	2557	c.2490A>G	c.(2488-2490)TTA>TTG	p.L830L	ADCY2_uc011cmo.1_Silent_p.L650L|ADCY2_uc010itm.1_Silent_p.L26L	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	830	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						ACTGTAGGTTAGACTTCTTAT	0.448													42	65					0	0	1	0	0	
SEMA5A	9037	broad.mit.edu	37	5	9227037	9227037	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:9227037C>T	uc003jek.2	-	7	1088	c.376G>A	c.(376-378)GAC>AAC	p.D126N		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	126	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						AATAACCGGTCGCCACCCACC	0.393													13	71					0	0	1	0	0	
CTNND2	1501	broad.mit.edu	37	5	11082831	11082831	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:11082831T>C	uc003jfa.1	-	16	2910	c.2765A>G	c.(2764-2766)GAC>GGC	p.D922G	CTNND2_uc010itt.2_Missense_Mutation_p.D831G|CTNND2_uc011cmy.1_Missense_Mutation_p.D585G|CTNND2_uc011cmz.1_Missense_Mutation_p.D489G|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.D514G	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	922					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						ATTTCTGACGTCCAAGGCCAT	0.522													29	78					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13708403	13708403	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13708403C>A	uc003jfd.2	-	76	13209	c.13167G>T	c.(13165-13167)ATG>ATT	p.M4389I	DNAH5_uc003jfc.2_Missense_Mutation_p.M557I	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4389					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGAAAATGTTCATAGGCTGGA	0.458									Kartagener_syndrome				50	83					1.39843e-22	1.66947e-22	1	1	0	
DNAH5	1767	broad.mit.edu	37	5	13753355	13753355	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13753355C>T	uc003jfd.2	-	63	10901	c.10859G>A	c.(10858-10860)CGA>CAA	p.R3620Q	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3620	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GAGTTCATTTCGGCTTTCTTT	0.333									Kartagener_syndrome				36	23					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13762932	13762932	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13762932C>T	uc003jfd.2	-	60	10222	c.10180G>A	c.(10180-10182)GAA>AAA	p.E3394K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3394	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTAGCAGTTTCGATGTTATAG	0.373									Kartagener_syndrome				22	60					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13769652	13769652	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13769652C>T	uc003jfd.2	-	57	9720	c.9678G>A	c.(9676-9678)GCG>GCA	p.A3226A	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3226	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTTTTCTTTCGCTTCCAGTT	0.433									Kartagener_syndrome				56	122					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13769697	13769697	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13769697T>G	uc003jfd.2	-	57	9675	c.9633A>C	c.(9631-9633)AAA>AAC	p.K3211N	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3211	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGAAGCTTCTTTGAGCTTTT	0.433									Kartagener_syndrome				52	108					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13811916	13811916	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13811916C>T	uc003jfd.2	-	44	7289	c.7247G>A	c.(7246-7248)CGC>CAC	p.R2416H		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2416	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTGAGGTGAGCGTTTCTTAAG	0.393									Kartagener_syndrome				20	57					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13850896	13850896	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13850896T>G	uc003jfd.2	-	31	5021	c.4979A>C	c.(4978-4980)AAA>ACA	p.K1660T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1660	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CACCCAAGATTTATCTATGTT	0.463									Kartagener_syndrome				39	84					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13865867	13865867	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13865867A>G	uc003jfd.2	-	27	4307	c.4265T>C	c.(4264-4266)GTC>GCC	p.V1422A		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1422	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGTTTCTATGACACTGTTGTA	0.333									Kartagener_syndrome				21	36					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13914039	13914039	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13914039T>G	uc003jfd.2	-	11	1391	c.1349A>C	c.(1348-1350)AAA>ACA	p.K450T	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	450	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AAGCTTTTGTTTTGTCTTGTG	0.318									Kartagener_syndrome				13	36					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13923469	13923469	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:13923469C>T	uc003jfd.2	-	4	400	c.358G>A	c.(358-360)GAT>AAT	p.D120N	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	120	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGAGCCACATCGTTTCCCTCG	0.458									Kartagener_syndrome				63	156					0	0	1	0	0	
TRIO	7204	broad.mit.edu	37	5	14462881	14462881	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:14462881C>T	uc003jff.2	+	36	5520	c.5514C>T	c.(5512-5514)GGC>GGT	p.G1838G	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Silent_p.G1487G|TRIO_uc003jfi.1_Silent_p.G141G	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1838					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GGAACGAGGGCCTGAGCAGCG	0.592													37	94					0	0	1	0	0	
FBXL7	23194	broad.mit.edu	37	5	15928442	15928442	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:15928442G>A	uc003jfn.1	+	3	1052	c.571G>A	c.(571-573)GTA>ATA	p.V191I		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	191	LRR 1.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GCTGGAAACCGTAACTGTCAG	0.627													12	23					0	0	1	0	0	
ZNF622	90441	broad.mit.edu	37	5	16465454	16465454	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:16465454C>A	uc003jfq.2	-	1	441	c.321G>T	c.(319-321)GAG>GAT	p.E107D		NM_033414	NP_219482	Q969S3	ZN622_HUMAN	zinc finger protein 622	107						cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						CATTCATCATCTCCACTTTCC	0.552													36	89					3.62531e-18	4.23176e-18	1	1	0	
MYO10	4651	broad.mit.edu	37	5	16671611	16671611	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:16671611A>C	uc003jft.3	-	38	5818	c.5350T>G	c.(5350-5352)TTC>GTC	p.F1784V	MYO10_uc011cnb.1_Missense_Mutation_p.F413V|MYO10_uc011cnc.1_Missense_Mutation_p.F663V|MYO10_uc011cnd.1_Missense_Mutation_p.F1141V|MYO10_uc011cne.1_Missense_Mutation_p.F1141V|MYO10_uc010itx.2_Missense_Mutation_p.F1406V	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1784	FERM.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						TTGAAGTAGAATTTCCATGGC	0.473													15	43					0	0	1	0	0	
MYO10	4651	broad.mit.edu	37	5	16794857	16794857	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:16794857C>T	uc003jft.3	-	4	833	c.365G>A	c.(364-366)AGC>AAC	p.S122N	MYO10_uc003jfu.2_Missense_Mutation_p.S89N	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	122	Myosin head-like.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						GTGGCGCCGGCTGTACTGCTC	0.647													7	19					0	0	1	0	0	
CDH18	1016	broad.mit.edu	37	5	19747052	19747052	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:19747052C>A	uc003jgc.2	-	3	899	c.522G>T	c.(520-522)ATG>ATT	p.M174I	CDH18_uc003jgd.2_Missense_Mutation_p.M174I|CDH18_uc011cnm.1_Missense_Mutation_p.M174I	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	174	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TTTTCTTACCCATATCTGACA	0.308													29	59					1.74807e-11	1.91857e-11	1	1	0	
CDH12	1010	broad.mit.edu	37	5	21752079	21752079	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:21752079G>T	uc010iuc.2	-	12	2610	c.2152C>A	c.(2152-2154)CAT>AAT	p.H718N	CDH12_uc011cno.1_Missense_Mutation_p.H678N|CDH12_uc003jgk.2_Missense_Mutation_p.H718N|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	718	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						AGCCTTTGATGAATGAAATCC	0.478										HNSCC(59;0.17)			27	78					9.39395e-14	1.05303e-13	1	1	0	
CDH12	1010	broad.mit.edu	37	5	21975363	21975363	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:21975363C>A	uc010iuc.2	-	3	821	c.363G>T	c.(361-363)GAG>GAT	p.E121D	CDH12_uc011cno.1_Missense_Mutation_p.E121D|CDH12_uc003jgk.2_Missense_Mutation_p.E121D	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	121	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						AGAAAGGTTTCTCTTCTCTAT	0.458										HNSCC(59;0.17)			39	88					6.5261e-18	7.59833e-18	1	1	0	
PRDM9	56979	broad.mit.edu	37	5	23526399	23526399	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:23526399A>C	uc003jgo.2	+	11	1384	c.1202A>C	c.(1201-1203)AAA>ACA	p.K401T		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	401	C2H2-type 1.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TCAAGTCAGAAATTTCTCAGT	0.473										HNSCC(3;0.000094)			41	82					0	0	1	0	0	
CDH10	1008	broad.mit.edu	37	5	24487912	24487912	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:24487912A>C	uc003jgr.1	-	12	2559	c.2227T>G	c.(2227-2229)TCC>GCC	p.S743A	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	743	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TCAGCAATGGAATCATTTCCT	0.463										HNSCC(23;0.051)			48	124					0	0	1	0	0	
CDH10	1008	broad.mit.edu	37	5	24505233	24505233	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:24505233C>T	uc003jgr.1	-	8	1713	c.1381G>A	c.(1381-1383)GCT>ACT	p.A461T	CDH10_uc011cnu.1_Intron	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	461	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ATTTCAGCAGCAATAACAGTA	0.284										HNSCC(23;0.051)			21	47					0	0	1	0	0	
CDH9	1007	broad.mit.edu	37	5	26881475	26881475	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:26881475C>A	uc003jgs.1	-	12	2309	c.2140G>T	c.(2140-2142)GAT>TAT	p.D714Y	CDH9_uc011cnv.1_Missense_Mutation_p.D307Y	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	714	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TGGATAAAATCTTGTACATCA	0.418													41	110					3.09479e-21	3.66737e-21	1	1	0	
CDH9	1007	broad.mit.edu	37	5	26881565	26881565	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:26881565C>A	uc003jgs.1	-	12	2219	c.2050G>T	c.(2050-2052)GAA>TAA	p.E684*	CDH9_uc011cnv.1_Nonsense_Mutation_p.E277*	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	684	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TTACTGTCTTCTCTTGCCTCT	0.438													88	137					1.3521e-30	1.65467e-30	1	1	0	
CDH9	1007	broad.mit.edu	37	5	26890660	26890660	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:26890660G>A	uc003jgs.1	-	8	1436	c.1267C>T	c.(1267-1269)CGG>TGG	p.R423W	CDH9_uc011cnv.1_Missense_Mutation_p.R16W	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	423	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TCAGTATGCCGATCAACAGAG	0.383													43	85					0	0	1	0	0	
CDH9	1007	broad.mit.edu	37	5	26902745	26902745	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:26902745T>C	uc003jgs.1	-	7	1262	c.1093A>G	c.(1093-1095)AAA>GAA	p.K365E		NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	365	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GCTGTATCTTTGAAAGGTCCC	0.378													11	94					0	0	1	0	0	
CDH9	1007	broad.mit.edu	37	5	26988334	26988334	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:26988334T>C	uc003jgs.1	-	2	276	c.107A>G	c.(106-108)AAG>AGG	p.K36R	CDH9_uc010iug.2_Missense_Mutation_p.K36R	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	36					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						ACCCGCTATCTTTTTGCTTGA	0.388													24	48					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	5	28927117	28927117	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:28927117G>T	uc003jgz.1	+	1		c.141G>T								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		GAGGCTCCAAGACCTCATCAA	0.498													6	24					0.0381472	0.0383344	1	1	0	
Unknown	0	broad.mit.edu	37	5	28927271	28927271	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:28927271G>T	uc003jgz.1	+	1		c.295G>T								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		ATATGGGACAGAATTGAATCA	0.393													17	50					1.5739e-10	1.71181e-10	1	1	0	
CDH6	1004	broad.mit.edu	37	5	31313500	31313500	+	Silent	SNP	G	A	A	rs142200699		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:31313500G>A	uc003jhe.1	+	8	1655	c.1329G>A	c.(1327-1329)TCG>TCA	p.S443S	CDH6_uc003jhd.1_Silent_p.S443S	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	443	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TTTTTACATCGAAACTTCTTG	0.393													67	120					0	0	1	0	0	
CDH6	1004	broad.mit.edu	37	5	31323161	31323161	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:31323161C>T	uc003jhe.1	+	12	2445	c.2119C>T	c.(2119-2121)CGC>TGC	p.R707C		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	707	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding	p.R707C(1)		ovary(4)|skin(2)|large_intestine(1)	7						TCCAACAGCTCGCGACAACAC	0.522													20	52					0	0	1	0	0	
RNASEN	29102	broad.mit.edu	37	5	31508786	31508786	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:31508786C>T	uc003jhg.2	-	9	1888	c.1529G>A	c.(1528-1530)CGC>CAC	p.R510H	RNASEN_uc003jhh.2_Missense_Mutation_p.R473H|RNASEN_uc003jhi.2_Missense_Mutation_p.R473H|RNASEN_uc010iui.1_Missense_Mutation_p.R433H	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	510	Necessary for interaction with DGCR8 and pri-miRNA processing activity.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						GGCCTTTTTGCGTTTGATTTC	0.478													25	65					0	0	1	0	0	
RNASEN	29102	broad.mit.edu	37	5	31521241	31521241	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:31521241C>T	uc003jhg.2	-	5	1295	c.936G>A	c.(934-936)AAG>AAA	p.K312K	RNASEN_uc003jhh.2_Silent_p.K312K|RNASEN_uc003jhi.2_Silent_p.K312K|RNASEN_uc010iui.1_Intron	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	312	Arg-rich.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						TTCCAGATCTCTTATACTCTT	0.423													59	122					0	0	1	0	0	
PDZD2	23037	broad.mit.edu	37	5	31799489	31799489	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:31799489A>G	uc003jhl.2	+	2	522	c.134A>G	c.(133-135)TAC>TGC	p.Y45C	PDZD2_uc003jhm.2_Missense_Mutation_p.Y45C	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	45					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTGCAGGAGTACATCCAGCTG	0.612													47	126					0	0	1	0	0	
PDZD2	23037	broad.mit.edu	37	5	32087704	32087704	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:32087704T>G	uc003jhl.2	+	20	4538	c.4150T>G	c.(4150-4152)TCT>GCT	p.S1384A	PDZD2_uc003jhm.2_Missense_Mutation_p.S1384A	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1384					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GGGAGCAGATTCTGTGTCCTC	0.587													6	34					0	0	1	0	0	
ZFR	51663	broad.mit.edu	37	5	32388677	32388677	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:32388677G>T	uc003jhr.1	-	13	2326	c.2246C>A	c.(2245-2247)TCT>TAT	p.S749Y	ZFR_uc011cny.1_RNA	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	749					multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		TTCAGTAATAGAAACAATTTT	0.393													29	58					3.1745e-13	3.54443e-13	1	1	0	
NPR3	4883	broad.mit.edu	37	5	32712124	32712124	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:32712124G>A	uc003jhv.2	+	1	460	c.242G>A	c.(241-243)CGC>CAC	p.R81H	NPR3_uc010iuo.2_Intron|NPR3_uc011cnz.1_Intron|NPR3_uc003jhu.2_Missense_Mutation_p.R81H	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	81	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	TATGCTCTGCGCAGCGTGGAG	0.632													10	25					0	0	1	0	0	
NPR3	4883	broad.mit.edu	37	5	32774841	32774841	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:32774841G>A	uc003jhv.2	+	4	1305	c.1087G>A	c.(1087-1089)GAT>AAT	p.D363N	NPR3_uc010iuo.2_Missense_Mutation_p.D147N|NPR3_uc011cnz.1_Missense_Mutation_p.D147N|NPR3_uc003jhu.2_Missense_Mutation_p.D363N	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	363	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	AGGATTCCACGATGCCATCCT	0.438													46	90					0	0	1	0	0	
NPR3	4883	broad.mit.edu	37	5	32783106	32783106	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:32783106G>A	uc003jhv.2	+	6	1616	c.1398G>A	c.(1396-1398)GAG>GAA	p.E466E	NPR3_uc010iuo.2_Silent_p.E250E|NPR3_uc011cnz.1_Silent_p.E250E|NPR3_uc003jhu.2_Silent_p.E466E	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	466	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	GAATTGTAGAGCATACAAACA	0.383													10	6					0	0	1	0	0	
C5orf23	79614	broad.mit.edu	37	5	32789659	32789659	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:32789659G>T	uc003jhw.1	+	1	715	c.152G>T	c.(151-153)AGA>ATA	p.R51I		NM_024563	NP_078839			hypothetical protein LOC79614												0						CATGGGAAAAGAACACCTCCT	0.383													63	38					1.48873e-21	1.76774e-21	1	1	0	
TARS	6897	broad.mit.edu	37	5	33467669	33467669	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:33467669T>G	uc003jhy.2	+	19	2323	c.2028T>G	c.(2026-2028)GTT>GTG	p.V676V	TARS_uc011cob.1_Silent_p.V664V|TARS_uc011coc.1_Silent_p.V697V|TARS_uc003jhz.2_Silent_p.V572V|TARS_uc011cod.1_Silent_p.V555V	NM_152295	NP_689508	P26639	SYTC_HUMAN	threonyl-tRNA synthetase	676					threonyl-tRNA aminoacylation	cytosol	ATP binding|protein homodimerization activity|threonine-tRNA ligase activity			ovary(2)	2					L-Threonine(DB00156)	TTTTAGTTGTTGGTGAAAAAG	0.403													18	37					0	0	1	0	0	
C1QTNF3	114899	broad.mit.edu	37	5	34033499	34033499	+	Silent	SNP	G	A	A	rs147942281	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:34033499G>A	uc003jin.2	-	3	348	c.261C>T	c.(259-261)GGC>GGT	p.G87G	C1QTNF3_uc003jio.2_Silent_p.G160G	NM_030945	NP_112207	Q9BXJ4	C1QT3_HUMAN	C1q and tumor necrosis factor related protein 3	87	Collagen-like.					collagen					0	all_lung(31;0.0207)					CACCTTTGTCGCCCTTCTCAC	0.542													61	82					0	0	1	0	0	
RAI14	26064	broad.mit.edu	37	5	34807920	34807920	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:34807920G>A	uc003jir.2	+	6	533	c.337G>A	c.(337-339)GAA>AAA	p.E113K	RAI14_uc010iur.2_Missense_Mutation_p.E113K|RAI14_uc011coj.1_Missense_Mutation_p.E113K|RAI14_uc010ius.1_Missense_Mutation_p.E42K|RAI14_uc003jis.2_Missense_Mutation_p.E116K|RAI14_uc003jit.2_Missense_Mutation_p.E113K|RAI14_uc011cok.1_Missense_Mutation_p.E105K	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a	113	ANK 3.					cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					ATGCCCAGCCGAAAGTGTCGA	0.363													32	67					0	0	1	0	0	
TTC23L	153657	broad.mit.edu	37	5	34845772	34845772	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:34845772A>G	uc003jiu.2	+	3	352	c.249A>G	c.(247-249)GAA>GAG	p.E83E		NM_144725	NP_653326	Q6PF05	TT23L_HUMAN	tetratricopeptide repeat domain 23-like	83	Potential.						binding			central_nervous_system(1)	1						TGATTAAGGAAAAAATGGTAA	0.348													9	26					0	0	1	0	0	
RAD1	5810	broad.mit.edu	37	5	34913634	34913634	+	Missense_Mutation	SNP	C	T	T	rs150523066		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:34913634C>T	uc003jix.2	-	3	577	c.248G>A	c.(247-249)CGA>CAA	p.R83Q	RAD1_uc003jiw.2_Intron|RAD1_uc003jiy.2_Missense_Mutation_p.R83Q|BRIX1_uc003jiz.2_5'Flank|BRIX1_uc011col.1_5'Flank|BRIX1_uc003jja.2_5'Flank	NM_002853	NP_002844	O60671	RAD1_HUMAN	RAD1 homolog	83					DNA damage checkpoint|DNA repair|DNA replication|meiotic prophase I	nucleoplasm	3'-5' exonuclease activity|damaged DNA binding|exodeoxyribonuclease III activity|protein binding				0	all_lung(31;0.000107)	Lung NSC(810;5.19e-05)|Ovarian(839;0.0448)|Breast(839;0.198)	COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			TAAATTAATTCGAAAAGTAAC	0.279								Other_conserved_DNA_damage_response_genes					25	50					0	0	1	0	0	
AGXT2	64902	broad.mit.edu	37	5	35035348	35035348	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:35035348T>C	uc003jjf.2	-	5	639	c.560A>G	c.(559-561)AAC>AGC	p.N187S	AGXT2_uc011com.1_Missense_Mutation_p.N187S|AGXT2_uc011con.1_Missense_Mutation_p.N95S	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	187					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	GATGTCTATGTTGTTTGAGTG	0.448													19	110					0	0	1	0	0	
AGXT2	64902	broad.mit.edu	37	5	35039553	35039553	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:35039553C>T	uc003jjf.2	-	3	317	c.238G>A	c.(238-240)GCA>ACA	p.A80T	AGXT2_uc011com.1_Missense_Mutation_p.A80T|AGXT2_uc011con.1_5'UTR	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	80					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	TGGAAATATGCCGTCACCACA	0.473													33	52					0	0	1	0	0	
SPEF2	79925	broad.mit.edu	37	5	35628563	35628563	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:35628563T>C	uc003jjo.2	+	2	171	c.60T>C	c.(58-60)AGT>AGC	p.S20S	SPEF2_uc003jjn.1_Silent_p.S20S|SPEF2_uc003jjq.3_Silent_p.S20S	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	20	CH.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GAAACTCAGGTCCCAAGTCAT	0.338													22	58					0	0	1	0	0	
IL7R	3575	broad.mit.edu	37	5	35873660	35873660	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:35873660C>T	uc003jjs.2	+	5	705	c.616C>T	c.(616-618)CGA>TGA	p.R206*	IL7R_uc011coo.1_Nonsense_Mutation_p.R206*|IL7R_uc011cop.1_Intron	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	206	Extracellular (Potential).|Fibronectin type-III.				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GATTAAAGTTCGATCCATCCC	0.423													23	59					0	0	1	0	0	
UGT3A1	133688	broad.mit.edu	37	5	35965926	35965926	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:35965926C>A	uc003jjv.1	-	4	562	c.405G>T	c.(403-405)AAG>AAT	p.K135N	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.K135N|UGT3A1_uc011cor.1_Missense_Mutation_p.K101N|UGT3A1_uc003jjy.1_Missense_Mutation_p.K81N	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	135	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGTTCTCATTCTTTAAGGAAT	0.358													25	40					7.87624e-14	8.83987e-14	1	1	0	
UGT3A2	167127	broad.mit.edu	37	5	36049086	36049086	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:36049086T>G	uc003jjz.1	-	4	841	c.748A>C	c.(748-750)AAC>CAC	p.N250H	UGT3A2_uc011cos.1_Missense_Mutation_p.N216H|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	250	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAGTCAGAGTTAATGAACCAC	0.418													38	75					0	0	1	0	0	
SKP2	6502	broad.mit.edu	37	5	36166751	36166751	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:36166751G>A	uc003jkc.1	+	4	705	c.523G>A	c.(523-525)GCT>ACT	p.A175T	SKP2_uc011cou.1_Missense_Mutation_p.A6T|SKP2_uc003jkd.2_Missense_Mutation_p.A175T	NM_005983	NP_005974	Q13309	SKP2_HUMAN	S-phase kinase-associated protein 2 isoform 1	175	LRR 2.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G1/S transition of mitotic cell cycle|S phase of mitotic cell cycle	nucleoplasm|SCF ubiquitin ligase complex	protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4	all_lung(31;5.63e-05)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCAACCATTGGCTGAACATTT	0.413													22	72					0	0	1	0	0	
SLC1A3	6507	broad.mit.edu	37	5	36608664	36608664	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:36608664C>T	uc003jkj.3	+	2	615	c.139C>T	c.(139-141)CGG>TGG	p.R47W	SLC1A3_uc011cox.1_5'UTR|SLC1A3_uc010iuy.2_Missense_Mutation_p.R47W	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	47	Cytoplasmic (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	TTACCTGTTTCGGAATGCTTT	0.443													65	136					0	0	1	0	0	
SLC1A3	6507	broad.mit.edu	37	5	36671167	36671167	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:36671167T>C	uc003jkj.3	+	4	832	c.356T>C	c.(355-357)ATG>ACG	p.M119T	SLC1A3_uc011cox.1_Missense_Mutation_p.M12T|SLC1A3_uc010iuy.2_Missense_Mutation_p.M119T	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	119					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	TCAGGGAAGATGGGAATGCGA	0.463													25	47					0	0	1	0	0	
SLC1A3	6507	broad.mit.edu	37	5	36677045	36677045	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:36677045G>A	uc003jkj.3	+	6	1095	c.619G>A	c.(619-621)GAA>AAA	p.E207K	SLC1A3_uc011cox.1_Missense_Mutation_p.E100K|SLC1A3_uc010iuy.2_Missense_Mutation_p.E207K	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	207	Extracellular (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	CCAGGCCAACGAAACGCTTGT	0.393													19	30					0	0	1	0	0	
NIPBL	25836	broad.mit.edu	37	5	36971016	36971016	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:36971016A>C	uc003jkl.3	+	7	1148	c.649A>C	c.(649-651)AAC>CAC	p.N217H	NIPBL_uc003jkk.3_Missense_Mutation_p.N217H|NIPBL_uc003jkm.1_Missense_Mutation_p.N96H	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	217					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TGGTTTGAGAAACATACATGA	0.348													25	50					0	0	1	0	0	
C5orf42	65250	broad.mit.edu	37	5	37183640	37183640	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:37183640T>G	uc011cpa.1	-	26	4874	c.4643A>C	c.(4642-4644)GAT>GCT	p.D1548A	C5orf42_uc011coy.1_Missense_Mutation_p.D49A|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.D623A|C5orf42_uc011cpb.1_Missense_Mutation_p.D429A	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1548										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			AATATATTCATCATCATCACG	0.318													15	44					0	0	1	0	0	
NUP155	9631	broad.mit.edu	37	5	37299063	37299063	+	Missense_Mutation	SNP	T	C	C	rs144851445		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:37299063T>C	uc003jku.1	-	32	3818	c.3700A>G	c.(3700-3702)ACA>GCA	p.T1234A	NUP155_uc003jkt.1_Missense_Mutation_p.T1175A|NUP155_uc010iuz.1_Missense_Mutation_p.T1170A	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	1234					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GAGCTCAATGTCACACTGTCA	0.363													18	32					0	0	1	0	0	
WDR70	55100	broad.mit.edu	37	5	37727132	37727132	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:37727132C>T	uc003jkv.2	+	17	1920	c.1862C>T	c.(1861-1863)TCT>TTT	p.S621F		NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	621										ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TATTGGGTTTCTCCAGCATAT	0.383													31	78					0	0	1	0	0	
LIFR	3977	broad.mit.edu	37	5	38481831	38481831	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:38481831T>G	uc010ive.1	-	20	3492	c.3160A>C	c.(3160-3162)ATT>CTT	p.I1054L	LIFR_uc003jli.2_Missense_Mutation_p.I1054L	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	1054	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					AATGAGACAATCTCACTGTTG	0.423			T	PLAG1	salivary adenoma								60	111					0	0	1	0	0	
LIFR	3977	broad.mit.edu	37	5	38506127	38506127	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:38506127C>T	uc010ive.1	-	9	1503	c.1171G>A	c.(1171-1173)GAA>AAA	p.E391K	LIFR_uc003jli.2_Missense_Mutation_p.E391K	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	391	Fibronectin type-III 2.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TGATAGCTTTCGTTTGTAGGT	0.289			T	PLAG1	salivary adenoma								36	75					0	0	1	0	0	
OSMR	9180	broad.mit.edu	37	5	38884119	38884119	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:38884119G>A	uc003jln.1	+	5	976	c.609G>A	c.(607-609)GTG>GTA	p.V203V	OSMR_uc003jlm.1_Silent_p.V203V	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	203	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TGAATAGTGTGCCTTTCATTA	0.368													69	134					0	0	1	0	0	
OSMR	9180	broad.mit.edu	37	5	38924691	38924691	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:38924691C>A	uc003jln.1	+	14	2405	c.2038C>A	c.(2038-2040)CTT>ATT	p.L680I	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	680	Fibronectin type-III 4.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					AAAGGCAGTTCTTTCAGGTGA	0.328													40	75					0.00552359	0.00557806	1	1	0	
RICTOR	253260	broad.mit.edu	37	5	38945754	38945754	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:38945754T>G	uc003jlp.2	-	34	4496	c.4472A>C	c.(4471-4473)GAA>GCA	p.E1491A	RICTOR_uc003jlo.2_Missense_Mutation_p.E1515A|RICTOR_uc010ivf.2_Intron	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	1491					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					ATTCATTATTTCCGTAAGACT	0.363													24	61					0	0	1	0	0	
FYB	2533	broad.mit.edu	37	5	39202791	39202791	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:39202791C>A	uc003jls.2	-	1	339	c.272G>T	c.(271-273)AGA>ATA	p.R91I	FYB_uc003jlt.2_Missense_Mutation_p.R91I|FYB_uc003jlu.2_Missense_Mutation_p.R91I|FYB_uc011cpl.1_Missense_Mutation_p.R101I	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	91					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			TGTTCCGAATCTTTGGCCTGC	0.552													12	26					0.000151284	0.000154703	1	1	0	
C9	735	broad.mit.edu	37	5	39311447	39311447	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:39311447A>G	uc003jlv.3	-	7	992	c.903T>C	c.(901-903)ATT>ATC	p.I301I		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	301	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			TTCCCAGATGAATTTCTCCTT	0.348													25	42					0	0	1	0	0	
C9	735	broad.mit.edu	37	5	39342196	39342196	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:39342196T>G	uc003jlv.3	-	2	269	c.180A>C	c.(178-180)CAA>CAC	p.Q60H		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	60	TSP type-1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			CACTTACCATTTGTCTGAGAC	0.493													22	53					0	0	1	0	0	
DAB2	1601	broad.mit.edu	37	5	39376141	39376141	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:39376141C>A	uc003jlx.2	-	13	2736	c.2205G>T	c.(2203-2205)GAG>GAT	p.E735D	DAB2_uc003jlw.2_Missense_Mutation_p.E714D	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	735	Required for interaction with MYO6 (By similarity).				cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			AGAAAGGGTTCTCAAATGCAT	0.428													35	71					3.76114e-14	4.23289e-14	1	1	0	
DAB2	1601	broad.mit.edu	37	5	39382876	39382876	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:39382876C>T	uc003jlx.2	-	10	1716	c.1185G>A	c.(1183-1185)CCG>CCA	p.P395P	DAB2_uc003jlw.2_Silent_p.P374P	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	395					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			CAAAAGGGTTCGGGGAGGATT	0.512													29	60					0	0	1	0	0	
PRKAA1	5562	broad.mit.edu	37	5	40767575	40767575	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:40767575C>A	uc003jmc.2	-	6	820	c.814G>T	c.(814-816)GAT>TAT	p.D272Y	PRKAA1_uc003jmb.2_Missense_Mutation_p.D287Y	NM_006251	NP_006242	Q13131	AAPK1_HUMAN	protein kinase, AMP-activated, alpha 1 catalytic	272	Protein kinase.				activation of MAPK activity|cell cycle arrest|cholesterol biosynthetic process|fatty acid biosynthetic process|insulin receptor signaling pathway|negative regulation of glucosylceramide biosynthetic process|positive regulation of anti-apoptosis|positive regulation of cholesterol biosynthetic process|regulation of fatty acid oxidation|response to hypoxia	cytosol	ATP binding|cAMP-dependent protein kinase activity|metal ion binding|protein binding			breast(1)	1					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Phenformin(DB00914)	TACCTGATATCTTTGATTGTG	0.269													26	36					1.12875e-08	1.20353e-08	1	1	0	
CARD6	84674	broad.mit.edu	37	5	40852710	40852710	+	Missense_Mutation	SNP	G	T	T	rs148937373		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:40852710G>T	uc003jmg.2	+	3	1351	c.1276G>T	c.(1276-1278)GAC>TAC	p.D426Y		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	426					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						GGCCATGAAAGACATTGTGAA	0.458													8	53					1.26484e-09	1.36158e-09	1	1	0	
CARD6	84674	broad.mit.edu	37	5	40853422	40853422	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:40853422A>G	uc003jmg.2	+	3	2063	c.1988A>G	c.(1987-1989)AAC>AGC	p.N663S		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	663					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						GACTTTGAAAACACTCAGAGA	0.488													75	121					0	0	1	0	0	
HEATR7B2	133558	broad.mit.edu	37	5	40998171	40998171	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:40998171T>C	uc003jmj.3	-	42	5231	c.4741A>G	c.(4741-4743)ACA>GCA	p.T1581A	HEATR7B2_uc003jmi.3_Missense_Mutation_p.T1136A	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1581							binding			ovary(6)|central_nervous_system(2)	8						GGAATGCTTGTCTCTTTACAC	0.453													67	131					0	0	1	0	0	
HEATR7B2	133558	broad.mit.edu	37	5	41058242	41058242	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:41058242G>A	uc003jmj.3	-	7	1169	c.679C>T	c.(679-681)CGT>TGT	p.R227C	HEATR7B2_uc003jmi.3_5'UTR	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	227							binding			ovary(6)|central_nervous_system(2)	8						GCGTATCCACGGAAGTCTTCC	0.512													17	33					0	0	1	0	0	
C6	729	broad.mit.edu	37	5	41181522	41181522	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:41181522C>T	uc003jmk.2	-	7	1076	c.866G>A	c.(865-867)AGA>AAA	p.R289K	C6_uc003jml.1_Missense_Mutation_p.R289K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	289	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATTTTCACTTCTCTTTGAGGA	0.363													34	63					0	0	1	0	0	
PLCXD3	345557	broad.mit.edu	37	5	41382433	41382433	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:41382433G>A	uc003jmm.1	-	2	409	c.307C>T	c.(307-309)CCC>TCC	p.P103S		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	103	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity	p.P103P(1)		skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						GGGTCTCTGGGCTTGGTGGAA	0.443													35	57					0	0	1	0	0	
GHR	2690	broad.mit.edu	37	5	42719381	42719381	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:42719381C>T	uc003jmt.2	+	10	1815	c.1772C>T	c.(1771-1773)CCT>CTT	p.P591L	GHR_uc011cpq.1_Missense_Mutation_p.P404L	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	591	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TCTGAGATGCCTGTCCCAGAC	0.502													18	38					0	0	1	0	0	
C5orf28	64417	broad.mit.edu	37	5	43446338	43446338	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:43446338G>T	uc003jny.2	-	3	777	c.634C>A	c.(634-636)CGT>AGT	p.R212S	C5orf28_uc003jnv.3_Missense_Mutation_p.R212S|C5orf28_uc003jnx.2_Missense_Mutation_p.R212S	NM_022483	NP_071928	Q0VDI3	CE028_HUMAN	hypothetical protein LOC64417	212						integral to membrane					0	Lung NSC(6;2.07e-05)					ACATCAATACGAACTCCATGT	0.343													7	79					0.0381472	0.0383344	1	1	0	
C5orf34	375444	broad.mit.edu	37	5	43490760	43490760	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:43490760G>A	uc003jnz.1	-	12	1969	c.1652C>T	c.(1651-1653)TCG>TTG	p.S551L		NM_198566	NP_940968	Q96MH7	CE034_HUMAN	hypothetical protein LOC375444	551										breast(1)	1	Lung NSC(6;2.07e-05)					AGAAGATGACGAATGAGTGGG	0.323													18	43					0	0	1	0	0	
NNT	23530	broad.mit.edu	37	5	43613147	43613147	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:43613147G>A	uc003joe.2	+	3	544	c.289G>A	c.(289-291)GAA>AAA	p.E97K	NNT_uc003jof.2_Missense_Mutation_p.E97K	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	97	Mitochondrial matrix.				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	GGGTGCGGGCGAAGCTTCCAA	0.473													46	114					0	0	1	0	0	
MRPS30	10884	broad.mit.edu	37	5	44811250	44811250	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:44811250C>T	uc003joh.2	+	2	779	c.741C>T	c.(739-741)CTC>CTT	p.L247L	MRPS30_uc003joi.1_RNA	NM_016640	NP_057724	Q9NP92	RT30_HUMAN	mitochondrial ribosomal protein S30	247					apoptosis|translation	mitochondrion|ribosome	structural constituent of ribosome				0	Lung NSC(6;8.08e-07)					CCAAGCAACTCGCAGAGGTAA	0.368													39	85					0	0	1	0	0	
PARP8	79668	broad.mit.edu	37	5	50117077	50117077	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:50117077T>C	uc003jon.3	+	17	1881	c.1699T>C	c.(1699-1701)TCT>CCT	p.S567P	PARP8_uc011cpz.1_Missense_Mutation_p.S459P|PARP8_uc003joo.2_Missense_Mutation_p.S567P|PARP8_uc003jop.2_Intron	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	567						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				CATGTGTAGGTCTGCGTTGGA	0.423													41	59					0	0	1	0	0	
ITGA1	3672	broad.mit.edu	37	5	52216277	52216277	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:52216277T>G	uc003jou.2	+	17	2323	c.2271T>G	c.(2269-2271)ACT>ACG	p.T757T	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Silent_p.T288T	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	757	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				CAGAATGCACTAAGCACTCCT	0.358													5	40					0	0	1	0	0	
FST	10468	broad.mit.edu	37	5	52779982	52779982	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:52779982C>T	uc003jpd.2	+	4	607	c.580C>T	c.(580-582)CGG>TGG	p.R194W	FST_uc003jpc.2_Missense_Mutation_p.R194W	NM_013409	NP_037541	P19883	FST_HUMAN	follistatin isoform FST344 precursor	194	Kazal-like 2.				hemopoietic progenitor cell differentiation|negative regulation of activin receptor signaling pathway|negative regulation of follicle-stimulating hormone secretion|negative regulation of transcription from RNA polymerase II promoter|positive regulation of hair follicle development	extracellular region	activin binding|protein binding|signal transducer activity				0		Ovarian(174;1.78e-06)|Lung NSC(810;3.55e-06)|Breast(144;4.08e-05)				GACCTGTAATCGGATTTGCCC	0.517													33	69					0	0	1	0	0	
GZMA	3001	broad.mit.edu	37	5	54404084	54404084	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:54404084C>T	uc003jpm.2	+	4	526	c.489C>T	c.(487-489)TCC>TCT	p.S163S		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	163	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				CATCTTGGTCCGATACTCTGA	0.423													24	38					0	0	1	0	0	
PPAP2A	8611	broad.mit.edu	37	5	54721131	54721131	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:54721131C>A	uc003jqa.2	-	6	1174	c.758G>T	c.(757-759)AGA>ATA	p.R253I	SKIV2L2_uc003jpy.3_3'UTR|SKIV2L2_uc011cqi.1_3'UTR|PPAP2A_uc003jpz.2_Missense_Mutation_p.R254I|PPAP2A_uc003jqb.2_RNA	NM_003711	NP_003702	O14494	LPP1_HUMAN	phosphatidic acid phosphatase type 2A isoform 1	253	Cytoplasmic (Potential).				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|androgen receptor signaling pathway|germ cell migration|negative regulation of cell proliferation|phospholipid dephosphorylation|regulation of lipid metabolic process|sphingolipid metabolic process	integral to plasma membrane|membrane fraction	phosphatidate phosphatase activity|sphingosine-1-phosphate phosphatase activity			ovary(2)	2		Lung NSC(810;4.08e-05)|Prostate(74;0.0181)|Breast(144;0.0544)				AAAAGAAGTTCTTTCTTTGAA	0.348													26	45					4.72057e-08	4.99044e-08	1	1	0	
SLC38A9	153129	broad.mit.edu	37	5	54993700	54993700	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:54993700A>C	uc003jqf.2	-	3	288	c.87T>G	c.(85-87)TTT>TTG	p.F29L	SLC38A9_uc010ivy.2_5'UTR	NM_173514	NP_775785	Q8NBW4	S38A9_HUMAN	solute carrier family 38, member 9	29					amino acid transport|sodium ion transport	integral to membrane					0		Lung NSC(810;0.00122)|Prostate(74;0.0376)|Breast(144;0.181)				CCGATGGCTCAAACTGGATAT	0.338													16	62					0	0	1	0	0	
DDX4	54514	broad.mit.edu	37	5	55059080	55059080	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:55059080G>T	uc003jqg.3	+	5	357	c.283G>T	c.(283-285)GGT>TGT	p.G95C	DDX4_uc010ivz.2_Missense_Mutation_p.G95C|DDX4_uc003jqh.3_Missense_Mutation_p.G95C	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	95	Gly-rich.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				TGGAAACAGAGGTAATTACTT	0.323													28	46					2.12542e-12	2.35257e-12	1	1	0	
DDX4	54514	broad.mit.edu	37	5	55082355	55082355	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:55082355G>T	uc003jqg.3	+	14	948	c.874G>T	c.(874-876)GAA>TAA	p.E292*	DDX4_uc010ivz.2_Nonsense_Mutation_p.E272*|DDX4_uc003jqh.3_Nonsense_Mutation_p.E258*|DDX4_uc003jqj.2_Nonsense_Mutation_p.E143*	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	292	Q motif.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				GACTTTTGAAGAAGCTAATCT	0.323													27	43					6.38683e-12	7.03806e-12	1	1	0	
IL31RA	133396	broad.mit.edu	37	5	55164656	55164656	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:55164656C>A	uc003jql.2	+	3	257	c.192C>A	c.(190-192)TAC>TAA	p.Y64*	IL31RA_uc003jqk.2_Nonsense_Mutation_p.Y64*|IL31RA_uc011cqj.1_Intron|IL31RA_uc003jqm.2_Nonsense_Mutation_p.Y32*|IL31RA_uc003jqn.2_Nonsense_Mutation_p.Y64*|IL31RA_uc010iwa.1_Nonsense_Mutation_p.Y32*|IL31RA_uc003jqo.2_5'UTR	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	32	Extracellular (Potential).|Fibronectin type-III 1.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				CCTGTGTCTACTACTATAGGA	0.373													43	81					2.00842e-17	2.32847e-17	1	1	0	
IL31RA	133396	broad.mit.edu	37	5	55212583	55212583	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:55212583T>G	uc003jql.2	+	15	1995	c.1930T>G	c.(1930-1932)TTT>GTT	p.F644V	IL31RA_uc003jqm.2_Missense_Mutation_p.F612V|IL31RA_uc003jqn.2_Missense_Mutation_p.F644V|IL31RA_uc003jqo.2_Missense_Mutation_p.F502V	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	612	Cytoplasmic (Potential).				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				GGTGGTGAACTTTGGGAATGT	0.458													20	53					0	0	1	0	0	
MAP3K1	4214	broad.mit.edu	37	5	56181765	56181765	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:56181765C>T	uc003jqw.3	+	17	4490	c.3989C>T	c.(3988-3990)TCG>TTG	p.S1330L		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	1330	Protein kinase.				cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		ATAGGGGGATCGGTGGCTCAT	0.343													19	56					0	0	1	0	0	
GPBP1	65056	broad.mit.edu	37	5	56526703	56526703	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:56526703A>C	uc003jrh.3	+	4	1368	c.94A>C	c.(94-96)AAC>CAC	p.N32H	GPBP1_uc010iwg.2_Missense_Mutation_p.N32H|GPBP1_uc003jri.3_5'UTR|GPBP1_uc003jrj.3_Missense_Mutation_p.N39H|GPBP1_uc003jrk.3_Missense_Mutation_p.N39H|GPBP1_uc003jrl.3_RNA	NM_022913	NP_075064	Q86WP2	GPBP1_HUMAN	GC-rich promoter binding protein 1 isoform 1	32					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			large_intestine(1)|central_nervous_system(1)	2		Lung NSC(810;0.000861)|Prostate(74;0.0305)|Breast(144;0.222)		OV - Ovarian serous cystadenocarcinoma(10;7.64e-39)		GCATTCTGAAAACTTTGCATG	0.343													32	54					0	0	1	0	0	
GPBP1	65056	broad.mit.edu	37	5	56546838	56546838	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:56546838A>C	uc003jrh.3	+	10	2304	c.1030A>C	c.(1030-1032)AAC>CAC	p.N344H	GPBP1_uc010iwg.2_Missense_Mutation_p.N364H|GPBP1_uc003jri.3_Missense_Mutation_p.N173H|GPBP1_uc003jrj.3_Missense_Mutation_p.N336H|GPBP1_uc003jrk.3_Missense_Mutation_p.N351H|GPBP1_uc003jrl.3_RNA	NM_022913	NP_075064	Q86WP2	GPBP1_HUMAN	GC-rich promoter binding protein 1 isoform 1	344					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			large_intestine(1)|central_nervous_system(1)	2		Lung NSC(810;0.000861)|Prostate(74;0.0305)|Breast(144;0.222)		OV - Ovarian serous cystadenocarcinoma(10;7.64e-39)		AAGGGATATAAACCGAAACTT	0.353													32	51					0	0	1	0	0	
PLK2	10769	broad.mit.edu	37	5	57752802	57752802	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:57752802T>G	uc003jrn.2	-	8	1253	c.1126A>C	c.(1126-1128)AAA>CAA	p.K376Q		NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	376					positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		GCTTTGTCTTTTTTGCCACCA	0.328													41	55					0	0	1	0	0	
PLK2	10769	broad.mit.edu	37	5	57754894	57754894	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:57754894A>G	uc003jrn.2	-	2	423	c.296T>C	c.(295-297)ATG>ACG	p.M99T	PLK2_uc011cql.1_Missense_Mutation_p.M1T	NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	99	Protein kinase.				positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		CAAATCTGTCATCTCGTAACA	0.393													26	58					0	0	1	0	0	
PDE4D	5144	broad.mit.edu	37	5	58287668	58287668	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:58287668G>A	uc003jsa.2	-	8	1351	c.1179C>T	c.(1177-1179)GTC>GTT	p.V393V	PDE4D_uc003jrx.2_Silent_p.V257V|PDE4D_uc003jry.2_Silent_p.V91V|PDE4D_uc003jrz.2_Silent_p.V329V|PDE4D_uc003jsb.2_Silent_p.V332V|PDE4D_uc003jrt.2_Silent_p.V91V|PDE4D_uc003jru.2_Silent_p.V169V|PDE4D_uc003jrv.2_Silent_p.V263V|PDE4D_uc003jrw.2_Silent_p.V271V|PDE4D_uc003jrs.2_Silent_p.V102V	NM_001104631	NP_001098101	Q08499	PDE4D_HUMAN	phosphodiesterase 4D isoform 1	393					signal transduction	cytosol|insoluble fraction|membrane|microtubule organizing center|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(5;6.5e-58)|all_epithelial(5;1.75e-57)|all_lung(5;6.84e-18)|Lung NSC(5;1.29e-17)|Melanoma(5;0.00168)|Prostate(74;0.00234)|Colorectal(97;0.00629)|Ovarian(174;0.00832)|Breast(144;0.00996)|all_hematologic(6;0.0344)|Hepatocellular(6;0.0742)|Esophageal squamous(6;0.0954)		Epithelial(2;2.6e-55)|all cancers(2;2.66e-49)|OV - Ovarian serous cystadenocarcinoma(10;1.48e-39)|Colorectal(2;8.29e-08)|Lung(2;4.47e-07)|STAD - Stomach adenocarcinoma(2;1.11e-05)|COAD - Colon adenocarcinoma(2;0.00012)|LUSC - Lung squamous cell carcinoma(2;0.000775)|LUAD - Lung adenocarcinoma(3;0.0173)|READ - Rectum adenocarcinoma(2;0.0276)	Adenosine monophosphate(DB00131)|Dyphylline(DB00651)	CCTTGGCAAGGACATCTTCTT	0.348													7	14					0	0	1	0	0	
DEPDC1B	55789	broad.mit.edu	37	5	59901524	59901524	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:59901524C>T	uc003jsh.2	-	8	1131	c.1058G>A	c.(1057-1059)CGA>CAA	p.R353Q	DEPDC1B_uc011cqm.1_Missense_Mutation_p.R353Q|DEPDC1B_uc011cqn.1_Missense_Mutation_p.R326Q	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	353	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				TACCAGTGTTCGGGTACCAAA	0.418													40	101					0	0	1	0	0	
DEPDC1B	55789	broad.mit.edu	37	5	59941376	59941376	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:59941376C>T	uc003jsh.2	-	4	594	c.521G>A	c.(520-522)CGC>CAC	p.R174H	DEPDC1B_uc011cqm.1_Missense_Mutation_p.R174H|DEPDC1B_uc011cqn.1_Missense_Mutation_p.R147H	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	174					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				CAGCTGTCTGCGGTGGACAAG	0.423													35	46					0	0	1	0	0	
DEPDC1B	55789	broad.mit.edu	37	5	59982961	59982961	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:59982961C>T	uc003jsh.2	-	2	215	c.142G>A	c.(142-144)GAA>AAA	p.E48K	DEPDC1B_uc011cqm.1_Missense_Mutation_p.E48K|DEPDC1B_uc011cqn.1_Missense_Mutation_p.E21K	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	48	DEP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				TCCACAGCTTCGGCCGCTGTG	0.507													43	81					0	0	1	0	0	
ELOVL7	79993	broad.mit.edu	37	5	60067919	60067919	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:60067919A>G	uc003jsi.3	-	4	266	c.66T>C	c.(64-66)GAT>GAC	p.D22D	ELOVL7_uc011cqo.1_5'UTR|ELOVL7_uc010iwk.2_Silent_p.D22D|ELOVL7_uc003jsj.3_Silent_p.Y9Y	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	22					fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				CAACTCTTGGATCTAAGAGAA	0.433													6	17					0	0	1	0	0	
KIF2A	3796	broad.mit.edu	37	5	61643984	61643984	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:61643984A>C	uc003jsy.3	+	3	580	c.269A>C	c.(268-270)AAA>ACA	p.K90T	KIF2A_uc003jsz.3_Missense_Mutation_p.K90T|KIF2A_uc010iwp.2_Missense_Mutation_p.K90T|KIF2A_uc003jsx.3_Missense_Mutation_p.K70T|KIF2A_uc010iwq.2_5'UTR	NM_004520	NP_004511	O00139	KIF2A_HUMAN	kinesin heavy chain member 2 isoform 1	90	Globular (Potential).				blood coagulation|cell differentiation|cell division|microtubule-based movement|mitotic prometaphase|mitotic spindle organization|nervous system development	centrosome|cytosol|microtubule|spindle pole	ATP binding|microtubule motor activity|protein binding				0		Lung NSC(810;8.94e-06)|Prostate(74;0.0132)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.14)		AAAGTAAACAAAATTGTAAAG	0.438													36	90					0	0	1	0	0	
KIF2A	3796	broad.mit.edu	37	5	61669521	61669521	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:61669521G>T	uc003jsy.3	+	17	1965	c.1654G>T	c.(1654-1656)GAA>TAA	p.E552*	KIF2A_uc003jsz.3_Nonsense_Mutation_p.E590*|KIF2A_uc010iwp.2_Nonsense_Mutation_p.E533*|KIF2A_uc003jsx.3_Nonsense_Mutation_p.E532*|KIF2A_uc010iwq.2_Nonsense_Mutation_p.E355*	NM_004520	NP_004511	O00139	KIF2A_HUMAN	kinesin heavy chain member 2 isoform 1	552	Kinesin-motor.				blood coagulation|cell differentiation|cell division|microtubule-based movement|mitotic prometaphase|mitotic spindle organization|nervous system development	centrosome|cytosol|microtubule|spindle pole	ATP binding|microtubule motor activity|protein binding				0		Lung NSC(810;8.94e-06)|Prostate(74;0.0132)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.14)		TAGGGTCAAAGAATTGACTGT	0.408													9	22					1.12685e-05	1.16379e-05	1	1	0	
RNF180	285671	broad.mit.edu	37	5	63509662	63509662	+	Missense_Mutation	SNP	G	A	A	rs139361682	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:63509662G>A	uc003jti.2	+	4	619	c.509G>A	c.(508-510)CGA>CAA	p.R170Q	RNF180_uc003jth.3_Missense_Mutation_p.R170Q|RNF180_uc010iws.2_Intron	NM_001113561	NP_001107033	Q86T96	RN180_HUMAN	ring finger protein 180 isoform 1	170	Cytoplasmic (Potential).					integral to membrane|nuclear envelope	zinc ion binding				0		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0848)|Colorectal(97;0.234)		Lung(70;0.114)		AACATGGCCCGAAATAATAAT	0.443													37	81					0	0	1	0	0	
ADAMTS6	11174	broad.mit.edu	37	5	64520865	64520865	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:64520865A>C	uc003jtp.2	-	17	2891	c.2077T>G	c.(2077-2079)TGT>GGT	p.C693G	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.C314G	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	693					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		ATATTATCACAGCCTACGTGC	0.383													29	57					0	0	1	0	0	
TRIM23	373	broad.mit.edu	37	5	64892294	64892294	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:64892294T>G	uc003jty.2	-	9	1460	c.1374A>C	c.(1372-1374)AAA>AAC	p.K458N	TRIM23_uc003jtw.2_Missense_Mutation_p.K458N|TRIM23_uc003jtx.2_Missense_Mutation_p.K458N	NM_001656	NP_001647	P36406	TRI23_HUMAN	ADP-ribosylation factor domain protein 1 isoform	458	GTP (By similarity).|ARF-like.			K->I: Suppresses GTPase activity. Decreases interaction with PSCD1.	interspecies interaction between organisms|small GTPase mediated signal transduction	Golgi membrane|lysosomal membrane	enzyme activator activity|GDP binding|GTP binding|GTPase activity|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Lung NSC(167;3.24e-06)|Prostate(74;0.0138)|Breast(144;0.0433)|Ovarian(174;0.0545)|Colorectal(97;0.234)		Lung(70;0.00473)		TTAATTTGTGTTTTCCACCTA	0.264													17	51					0	0	1	0	0	
SGTB	54557	broad.mit.edu	37	5	64976553	64976553	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:64976553T>G	uc003jud.2	-	7	768	c.548A>C	c.(547-549)GAC>GCC	p.D183A		NM_019072	NP_061945	Q96EQ0	SGTB_HUMAN	small glutamine-rich tetratricopeptide repeat	183	TPR 4.						binding				0		Lung NSC(167;3.24e-06)|Prostate(74;0.0138)|Ovarian(174;0.0545)|Breast(144;0.174)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0657)|Lung(70;0.00487)		ATTTTCAGGGTCAAGATCTAA	0.358													49	78					0	0	1	0	0	
MAST4	375449	broad.mit.edu	37	5	66438048	66438048	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:66438048A>G	uc003jut.1	+	19	2101	c.2033A>G	c.(2032-2034)GAC>GGC	p.D678G	MAST4_uc003juu.1_Missense_Mutation_p.D688G|MAST4_uc011cra.1_Missense_Mutation_p.D661G|MAST4_uc003juv.2_Missense_Mutation_p.D673G|MAST4_uc003juw.2_Missense_Mutation_p.D673G	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	870	AGC-kinase C-terminal.					cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		TCTGAGGATGACACAAGTTAT	0.358													32	68					0	0	1	0	0	
MAST4	375449	broad.mit.edu	37	5	66461024	66461024	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:66461024C>T	uc003jut.1	+	28	5518	c.5450C>T	c.(5449-5451)GCG>GTG	p.A1817V	MAST4_uc003juw.2_Missense_Mutation_p.A1745V|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	2009						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CCAGAAACTGCGAAAACCAGT	0.562													4	16					0	0	1	0	0	
CCNB1	891	broad.mit.edu	37	5	68470866	68470866	+	Missense_Mutation	SNP	C	G	G	rs1622483		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:68470866C>G	uc003jvm.2	+	6	1045	c.868C>G	c.(868-870)CTA>GTA	p.L290V	CCNB1_uc011crd.1_Missense_Mutation_p.L290V|CCNB1_uc010ixb.2_Missense_Mutation_p.L290V	NM_031966	NP_114172	P14635	CCNB1_HUMAN	cyclin B1	290					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitotic cell cycle spindle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|mitotic spindle stabilization|positive regulation of attachment of spindle microtubules to kinetochore|positive regulation of mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	condensed nuclear chromosome outer kinetochore|cytosol|microtubule organizing center|nucleoplasm|spindle pole					0		Lung NSC(167;5.51e-05)|Prostate(74;0.00634)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.24e-56)|Epithelial(20;1.12e-52)|all cancers(19;2.63e-48)|Lung(70;0.0177)		AATGAAGATTCTAAGAGCTTT	0.418													53	111					0	0	1	0	0	
CCNB1	891	broad.mit.edu	37	5	68470918	68470918	+	Missense_Mutation	SNP	G	A	A	rs138386021		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:68470918G>A	uc003jvm.2	+	6	1097	c.920G>A	c.(919-921)CGG>CAG	p.R307Q	CCNB1_uc011crd.1_Missense_Mutation_p.R307Q|CCNB1_uc010ixb.2_Missense_Mutation_p.R307Q	NM_031966	NP_114172	P14635	CCNB1_HUMAN	cyclin B1	307					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitotic cell cycle spindle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|mitotic spindle stabilization|positive regulation of attachment of spindle microtubules to kinetochore|positive regulation of mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	condensed nuclear chromosome outer kinetochore|cytosol|microtubule organizing center|nucleoplasm|spindle pole					0		Lung NSC(167;5.51e-05)|Prostate(74;0.00634)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.24e-56)|Epithelial(20;1.12e-52)|all cancers(19;2.63e-48)|Lung(70;0.0177)		CACTTCCTTCGGAGAGCATCT	0.448													51	95					0	0	1	0	0	
RAD17	5884	broad.mit.edu	37	5	68681898	68681898	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:68681898C>A	uc003jwo.2	+	6	769	c.707C>A	c.(706-708)TCT>TAT	p.S236Y	RAD17_uc003jwg.2_Missense_Mutation_p.S225Y|RAD17_uc003jwh.2_Missense_Mutation_p.S225Y|RAD17_uc003jwi.2_Missense_Mutation_p.S225Y|RAD17_uc003jwj.2_Missense_Mutation_p.S225Y|RAD17_uc003jwk.2_Missense_Mutation_p.S225Y|RAD17_uc003jwl.2_Missense_Mutation_p.S225Y|RAD17_uc003jwm.2_Missense_Mutation_p.S60Y|RAD17_uc003jwn.2_Missense_Mutation_p.S139Y	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2	236					cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		TATCGGGATTCTCATACTTTA	0.244								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					23	60					4.81078e-24	5.77265e-24	1	1	0	
NAIP	4671	broad.mit.edu	37	5	70308498	70308498	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70308498G>A	uc003kar.1	-	4	963	c.245C>T	c.(244-246)GCG>GTG	p.A82V	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Missense_Mutation_p.A82V|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	82	BIR 1.				anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		CCCAGCGGCCGCCATCTCCTG	0.488													32	90					0	0	1	0	0	
NAIP	4671	broad.mit.edu	37	5	70308571	70308571	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70308571G>A	uc003kar.1	-	4	890	c.172C>T	c.(172-174)CGC>TGC	p.R58C	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Missense_Mutation_p.R58C|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	58					anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		GCTTCACTGCGCATTTGAGAG	0.483													67	150					0	0	1	0	0	
BDP1	55814	broad.mit.edu	37	5	70786822	70786822	+	Missense_Mutation	SNP	G	A	A	rs142464289	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70786822G>A	uc003kbp.1	+	11	1767	c.1504G>A	c.(1504-1506)GCT>ACT	p.A502T	BDP1_uc003kbn.1_Missense_Mutation_p.A502T|BDP1_uc003kbo.2_Missense_Mutation_p.A502T	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	502					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TAAATGTCAGGCTATAAGGCC	0.363													21	52					0	0	1	0	0	
BDP1	55814	broad.mit.edu	37	5	70791146	70791146	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70791146C>T	uc003kbp.1	+	12	1973	c.1710C>T	c.(1708-1710)TTC>TTT	p.F570F	BDP1_uc003kbn.1_Silent_p.F570F|BDP1_uc003kbo.2_Silent_p.F570F	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	570					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TGCCTTCATTCGAAGTTGGAA	0.328													28	63					0	0	1	0	0	
BDP1	55814	broad.mit.edu	37	5	70805836	70805836	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70805836G>A	uc003kbp.1	+	17	3180	c.2917G>A	c.(2917-2919)GTG>ATG	p.V973M	BDP1_uc003kbn.1_Missense_Mutation_p.V973M|BDP1_uc003kbo.2_Missense_Mutation_p.V973M	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	973	3.|9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.			V -> G (in Ref. 2; CAC21448/CAC04245).	regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		GACACCAGAGGTGACTGATGC	0.458													51	101					0	0	1	0	0	
BDP1	55814	broad.mit.edu	37	5	70810930	70810930	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70810930G>A	uc003kbp.1	+	20	4893	c.4630G>A	c.(4630-4632)GAC>AAC	p.D1544N	BDP1_uc003kbo.2_Missense_Mutation_p.D1544N	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1544					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		CCAGAAAAATGACTCAGTTGT	0.343													16	38					0	0	1	0	0	
BDP1	55814	broad.mit.edu	37	5	70818628	70818628	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70818628G>T	uc003kbp.1	+	24	5502	c.5239G>T	c.(5239-5241)GAT>TAT	p.D1747Y	BDP1_uc003kbo.2_Missense_Mutation_p.D1747Y|BDP1_uc003kbq.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1747					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AGCAAGAAAAGATTGTGTAGG	0.368													28	44					1.88708e-17	2.18811e-17	1	1	0	
BDP1	55814	broad.mit.edu	37	5	70855831	70855831	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70855831T>C	uc003kbp.1	+	37	7526	c.7263T>C	c.(7261-7263)GAT>GAC	p.D2421D	BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2421					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AGGGACAAGATATTTTTCTTA	0.403													44	71					0	0	1	0	0	
BDP1	55814	broad.mit.edu	37	5	70858262	70858262	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70858262A>G	uc003kbp.1	+	38	7921	c.7658A>G	c.(7657-7659)GAA>GGA	p.E2553G	BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2553					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		GAAAGCCAGGAAAAAAATCGA	0.373													10	96					0	0	1	0	0	
MCCC2	64087	broad.mit.edu	37	5	70948577	70948577	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:70948577G>A	uc003kbs.3	+	16	1708	c.1570G>A	c.(1570-1572)GCA>ACA	p.A524T	MCCC2_uc003kbt.3_RNA	NM_022132	NP_071415	Q9HCC0	MCCB_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	524	Carboxyltransferase.				leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)	1		Lung NSC(167;0.000697)|Prostate(74;0.0107)|Ovarian(174;0.0175)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.04e-54)	Biotin(DB00121)	CTATTCCAGCGCAAGGTGGGG	0.473													15	34					0	0	1	0	0	
MAP1B	4131	broad.mit.edu	37	5	71494696	71494696	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:71494696C>T	uc003kbw.3	+	5	5755	c.5514C>T	c.(5512-5514)TTC>TTT	p.F1838F	MAP1B_uc010iyw.1_Silent_p.F1855F|MAP1B_uc010iyx.1_Silent_p.F1712F|MAP1B_uc010iyy.1_Silent_p.F1712F	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1838						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		CAGTGTTATTCGATACAATGC	0.498													30	67					0	0	1	0	0	
MRPS27	23107	broad.mit.edu	37	5	71524145	71524145	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:71524145T>G	uc003kbz.3	-	8	678	c.642A>C	c.(640-642)AAA>AAC	p.K214N	MRPS27_uc003kca.3_Missense_Mutation_p.K158N|MRPS27_uc011cse.1_Missense_Mutation_p.K228N|MRPS27_uc010iza.2_Missense_Mutation_p.K158N|MRPS27_uc011csd.1_5'Flank|MRPS27_uc010iyz.1_RNA	NM_015084	NP_055899	Q92552	RT27_HUMAN	mitochondrial ribosomal protein S27	214						mitochondrion|ribosome					0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-53)		AGTTCTTTTGTTTTAGGCCTG	0.403													24	75					0	0	1	0	0	
ZNF366	167465	broad.mit.edu	37	5	71739902	71739902	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:71739902C>T	uc003kce.1	-	5	2102	c.1916G>A	c.(1915-1917)AGC>AAC	p.S639N		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	639					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GAGCTGCTGGCTCTGGGGGGC	0.647													66	191					0	0	1	0	0	
TNPO1	3842	broad.mit.edu	37	5	72201159	72201159	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:72201159C>T	uc003kck.3	+	24	2766	c.2619C>T	c.(2617-2619)GGC>GGT	p.G873G	TNPO1_uc011csj.1_Silent_p.G823G|TNPO1_uc003kch.2_Silent_p.G865G|TNPO1_uc003kci.3_Silent_p.G865G|TNPO1_uc003kcg.3_Silent_p.G865G	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	873					interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		ATCAAGTTGGCGATGAAAATT	0.353													39	85					0	0	1	0	0	
FCHO2	115548	broad.mit.edu	37	5	72285288	72285288	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:72285288A>C	uc003kcl.2	+	3	276	c.160A>C	c.(160-162)ACA>CCA	p.T54P	FCHO2_uc011csl.1_Missense_Mutation_p.T54P|FCHO2_uc011csk.1_Missense_Mutation_p.T54P|FCHO2_uc011csm.1_5'Flank	NM_138782	NP_620137	Q0JRZ9	FCHO2_HUMAN	FCH domain only 2 isoform a	54	FCH.									ovary(1)	1		Lung NSC(167;0.0465)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;4.6e-53)		CAGGTCAATGACAAAACTAGC	0.338													5	11					0	0	1	0	0	
BTF3	689	broad.mit.edu	37	5	72798357	72798357	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:72798357A>G	uc003kcr.1	+	3	489	c.246A>G	c.(244-246)ACA>ACG	p.T82T	BTF3_uc003kcq.1_Silent_p.T38T|BTF3_uc003kcs.1_RNA|BTF3_uc003kct.1_RNA	NM_001037637	NP_001032726	P20290	BTF3_HUMAN	basic transcription factor 3 isoform A	82	NAC-A/B.			Missing (in Ref. 2; AAA58398).	regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding				0		Lung NSC(167;0.00405)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;2.73e-54)		GAACAGCCACAGCAGATGACA	0.368													7	61					0	0	1	0	0	
RGNEF	64283	broad.mit.edu	37	5	73153952	73153952	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:73153952G>A	uc011csq.1	+	15	1966	c.1955G>A	c.(1954-1956)CGA>CAA	p.R652Q	RGNEF_uc003kcx.2_Missense_Mutation_p.R652Q|RGNEF_uc010izf.2_Missense_Mutation_p.R652Q|RGNEF_uc011csr.1_Missense_Mutation_p.R339Q	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	652	Phorbol-ester/DAG-type.				cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		AAGCTGAATCGACATCAGTTT	0.448													53	119					0	0	1	0	0	
RGNEF	64283	broad.mit.edu	37	5	73207201	73207201	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:73207201T>G	uc011csq.1	+	34	4760	c.4749T>G	c.(4747-4749)AAT>AAG	p.N1583K	RGNEF_uc003kcx.2_Missense_Mutation_p.N1583K|RGNEF_uc010izf.2_Missense_Mutation_p.N1583K|RGNEF_uc011csr.1_Missense_Mutation_p.N1270K|RGNEF_uc003kcz.3_Missense_Mutation_p.N547K|RGNEF_uc003kda.3_Missense_Mutation_p.N503K	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	1583	Interaction with microtubules (By similarity).				cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		ACAAACTGAATCCATCAGTTA	0.378													14	35					0	0	1	0	0	
GFM2	84340	broad.mit.edu	37	5	74047274	74047274	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:74047274G>A	uc003kdh.1	-	6	653	c.349C>T	c.(349-351)CGA>TGA	p.R117*	GFM2_uc003kdi.1_Nonsense_Mutation_p.R117*|GFM2_uc010izj.1_Nonsense_Mutation_p.R149*|GFM2_uc010izk.1_RNA|GFM2_uc003kdj.1_Nonsense_Mutation_p.R117*|GFM2_uc010izl.1_Intron	NM_032380	NP_115756	Q969S9	RRF2M_HUMAN	mitochondrial elongation factor G2 isoform 1	117					mitochondrial translation|ribosome disassembly	mitochondrion	GTP binding|GTPase activity				0		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Breast(144;0.231)		OV - Ovarian serous cystadenocarcinoma(47;1.86e-56)		CCTCTTTCTCGCTCTTGGGCC	0.378													64	121					0	0	1	0	0	
NSA2	10412	broad.mit.edu	37	5	74066522	74066522	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:74066522C>T	uc003kdk.1	+	4	492	c.409C>T	c.(409-411)CGA>TGA	p.R137*		NM_014886	NP_055701	O95478	NSA2_HUMAN	NSA2 ribosome biogenesis homolog	137	Lys-rich.				rRNA processing	nucleolus|ribonucleoprotein complex				ovary(1)	1						AAAAGTTATTCGAACAGGAAA	0.368													30	63					0	0	1	0	0	
GCNT4	51301	broad.mit.edu	37	5	74324701	74324701	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:74324701G>A	uc003kdn.2	-	1	2024	c.1162C>T	c.(1162-1164)CGA>TGA	p.R388*		NM_016591	NP_057675	Q9P109	GCNT4_HUMAN	core 2 beta-1,6-N-acetylglucosaminyltransferase	388	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;8.44e-57)		CACACGCTTCGAAGGTGAGAT	0.418													50	57					0	0	1	0	0	
HMGCR	3156	broad.mit.edu	37	5	74645970	74645970	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:74645970A>C	uc003kdp.2	+	7	816	c.660A>C	c.(658-660)TTA>TTC	p.L220F	HMGCR_uc011cst.1_Missense_Mutation_p.L240F|HMGCR_uc003kdq.2_Missense_Mutation_p.L220F|HMGCR_uc010izn.1_Missense_Mutation_p.L60F	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	220	Helical; (Potential).				cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	CCTTGGTATTAGAGGTAAGAC	0.398													22	53					0	0	1	0	0	
POLK	51426	broad.mit.edu	37	5	74869615	74869615	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:74869615G>A	uc003kdw.2	+	5	557	c.461G>A	c.(460-462)GGA>GAA	p.G154E	POLK_uc003kdx.2_RNA|POLK_uc003kdy.2_RNA|POLK_uc003kea.2_Missense_Mutation_p.G154E|POLK_uc003keb.2_Missense_Mutation_p.G154E|POLK_uc010izq.2_Missense_Mutation_p.G154E|POLK_uc003kec.2_Missense_Mutation_p.G64E|POLK_uc010izr.2_RNA|POLK_uc010izs.2_RNA|POLK_uc003ked.2_Missense_Mutation_p.G64E|POLK_uc003kee.2_Missense_Mutation_p.G154E|POLK_uc003kef.2_Missense_Mutation_p.G64E	NM_016218	NP_057302	Q9UBT6	POLK_HUMAN	DNA-directed DNA polymerase kappa	154	UmuC.				DNA replication|nucleotide-excision repair, DNA gap filling	nucleus	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			ovary(2)|kidney(2)	4		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;2.9e-54)|all cancers(79;1.27e-42)		GCCATGCCAGGATTTATTGCT	0.413								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					42	78					0	0	1	0	0	
POLK	51426	broad.mit.edu	37	5	74892287	74892287	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:74892287A>G	uc003kdw.2	+	13	1865	c.1769A>G	c.(1768-1770)AAA>AGA	p.K590R	POLK_uc003kdx.2_RNA|POLK_uc003kdy.2_RNA|POLK_uc010izq.2_Missense_Mutation_p.K392R|POLK_uc003kec.2_Missense_Mutation_p.K500R|POLK_uc010izr.2_RNA|POLK_uc010izs.2_RNA|POLK_uc003ked.2_Intron|POLK_uc003kee.2_Intron|POLK_uc003kef.2_Missense_Mutation_p.K500R	NM_016218	NP_057302	Q9UBT6	POLK_HUMAN	DNA-directed DNA polymerase kappa	590					DNA replication|nucleotide-excision repair, DNA gap filling	nucleus	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			ovary(2)|kidney(2)	4		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;2.9e-54)|all cancers(79;1.27e-42)		GCCGTGAATAAACAAAGTTTC	0.333								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					43	92					0	0	1	0	0	
SV2C	22987	broad.mit.edu	37	5	75427987	75427987	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:75427987T>C	uc003kei.1	+	2	546	c.412T>C	c.(412-414)TAT>CAT	p.Y138H		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	138	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		AGCCCAGCAGTATGAGCTGAT	0.547													37	89					0	0	1	0	0	
F2RL2	2151	broad.mit.edu	37	5	75913486	75913486	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:75913486A>C	uc003kem.2	-	2	1231	c.1046T>G	c.(1045-1047)CTT>CGT	p.L349R	IQGAP2_uc003kek.2_Intron|IQGAP2_uc010izv.2_Intron|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron|F2RL2_uc011csw.1_Missense_Mutation_p.L327R	NM_004101	NP_004092	O00254	PAR3_HUMAN	coagulation factor II (thrombin) receptor-like 2	349	Helical; Name=7; (Potential).				platelet activation	extracellular region|integral to plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|thrombin receptor activity			skin(2)|ovary(1)	3		all_lung(232;0.000462)|Lung NSC(167;0.00124)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)		GCAACTATTAAGACTACCCAG	0.328													28	58					0	0	1	0	0	
IQGAP2	10788	broad.mit.edu	37	5	75927780	75927780	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:75927780A>G	uc003kek.2	+	15	1931	c.1709A>G	c.(1708-1710)GAC>GGC	p.D570G	IQGAP2_uc010izv.2_Missense_Mutation_p.D123G|IQGAP2_uc011csv.1_Missense_Mutation_p.D123G|IQGAP2_uc003kel.2_Missense_Mutation_p.D123G	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	570					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		AATGCAAATGACATAATCCCG	0.388													31	61					0	0	1	0	0	
F2RL1	2150	broad.mit.edu	37	5	76129240	76129240	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:76129240C>T	uc003keo.2	+	2	983	c.808C>T	c.(808-810)CGA>TGA	p.R270*		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	270	Cytoplasmic (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		CAGAATGCTGCGATCTTCTGC	0.493													59	100					0	0	1	0	0	
AGGF1	55109	broad.mit.edu	37	5	76344002	76344002	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:76344002G>A	uc003ket.2	+	7	1578	c.1218G>A	c.(1216-1218)TGG>TGA	p.W406*		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	406					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		ACAAAATTTGGCCCCCATGTA	0.353													33	101					0	0	1	0	0	
AP3B1	8546	broad.mit.edu	37	5	77409712	77409712	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:77409712C>T	uc003kfj.2	-	19	2238	c.2113G>A	c.(2113-2115)GAA>AAA	p.E705K		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	705	Glu/Ser-rich.				endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)		TCCCCACTTTCGCCTTGTTCT	0.463									Hermansky-Pudlak_syndrome				15	38					0	0	1	0	0	
AP3B1	8546	broad.mit.edu	37	5	77423858	77423858	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:77423858T>G	uc003kfj.2	-	17	2089	c.1964A>C	c.(1963-1965)GAG>GCG	p.E655A		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	655					endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)		ACTTACCAACTCTATTACTTC	0.373									Hermansky-Pudlak_syndrome				8	100					0	0	1	0	0	
SCAMP1	9522	broad.mit.edu	37	5	77717663	77717663	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:77717663T>C	uc003kfl.2	+	6	668	c.511T>C	c.(511-513)TTG>CTG	p.L171L	SCAMP1_uc010jaa.2_Intron|SCAMP1_uc011ctc.1_RNA|SCAMP1_uc011ctd.1_RNA|SCAMP1_uc003kfm.2_RNA	NM_004866	NP_004857	O15126	SCAM1_HUMAN	secretory carrier membrane protein 1	171	Helical; (Potential).				post-Golgi vesicle-mediated transport|protein transport	integral to membrane|recycling endosome membrane|trans-Golgi network	protein binding				0		all_lung(232;0.000397)|Lung NSC(167;0.00105)|Ovarian(174;0.0105)|Prostate(461;0.214)		OV - Ovarian serous cystadenocarcinoma(54;1.9e-46)|Epithelial(54;9.4e-43)|all cancers(79;1.12e-37)		CTTCGGATGCTTGGCTTGGTT	0.358													16	161					0	0	1	0	0	
JMY	133746	broad.mit.edu	37	5	78608246	78608246	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:78608246T>C	uc003kfx.3	+	8	2509	c.1989T>C	c.(1987-1989)GAT>GAC	p.D663D	JMY_uc003kfw.1_Silent_p.D309D	NM_152405	NP_689618	Q8N9B5	JMY_HUMAN	junction-mediating and regulatory protein	663					'de novo' actin filament nucleation|actin polymerization-dependent cell motility|Arp2/3 complex-mediated actin nucleation|cell cycle arrest|DNA repair|induction of apoptosis|positive regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter	cell leading edge|cytoplasm|cytoskeleton|nucleus	actin binding|transcription coactivator activity				0		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;4.45e-45)|Epithelial(54;5.85e-40)|all cancers(79;2.89e-35)		AATTACATGATGAAGAAGAAA	0.313													31	64					0	0	1	0	0	
JMY	133746	broad.mit.edu	37	5	78608266	78608266	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:78608266C>T	uc003kfx.3	+	8	2529	c.2009C>T	c.(2008-2010)GCC>GTC	p.A670V	JMY_uc003kfw.1_Missense_Mutation_p.A316V	NM_152405	NP_689618	Q8N9B5	JMY_HUMAN	junction-mediating and regulatory protein	670					'de novo' actin filament nucleation|actin polymerization-dependent cell motility|Arp2/3 complex-mediated actin nucleation|cell cycle arrest|DNA repair|induction of apoptosis|positive regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter	cell leading edge|cytoplasm|cytoskeleton|nucleus	actin binding|transcription coactivator activity				0		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;4.45e-45)|Epithelial(54;5.85e-40)|all cancers(79;2.89e-35)		AGAAAAAGTGCCTGGGTTAGC	0.294													34	67					0	0	1	0	0	
HOMER1	9456	broad.mit.edu	37	5	78734856	78734856	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:78734856C>T	uc003kfy.2	-	5	1607	c.504G>A	c.(502-504)CAG>CAA	p.Q168Q	HOMER1_uc010jab.2_Silent_p.Q168Q|HOMER1_uc010jac.2_Intron|HOMER1_uc010jad.2_Intron	NM_004272	NP_004263	Q86YM7	HOME1_HUMAN	homer 1	168					activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic density|postsynaptic membrane					0		Lung NSC(167;0.00131)|all_lung(232;0.00151)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.87e-44)|Epithelial(54;7.07e-41)|all cancers(79;5.5e-36)		GCAATGCATTCTGAGTTGGTT	0.393													29	93					0	0	1	0	0	
PAPD4	167153	broad.mit.edu	37	5	78975427	78975427	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:78975427C>T	uc010jae.1	+	14	1652	c.1234C>T	c.(1234-1236)CGT>TGT	p.R412C	PAPD4_uc003kgb.2_Missense_Mutation_p.R412C|PAPD4_uc010jaf.1_Missense_Mutation_p.R412C|PAPD4_uc003kga.2_Missense_Mutation_p.R408C|PAPD4_uc003kfz.2_Missense_Mutation_p.R369C	NM_001114393	NP_001107865	Q6PIY7	GLD2_HUMAN	PAP associated domain containing 4	412	PAP-associated.				histone mRNA catabolic process|mRNA processing|RNA polyadenylation	cytoplasm	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity			ovary(1)	1		Lung NSC(167;0.00293)|all_lung(232;0.00323)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;8.61e-47)|Epithelial(54;1.32e-41)|all cancers(79;2.45e-36)		GATTTCAGTTCGTGAAGCCAA	0.313													27	45					0	0	1	0	0	
CMYA5	202333	broad.mit.edu	37	5	79026867	79026867	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79026867A>C	uc003kgc.2	+	2	2351	c.2279A>C	c.(2278-2280)GAA>GCA	p.E760A		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	760						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TCCACAACCGAAAAGACTTCT	0.512													40	70					0	0	1	0	0	
CMYA5	202333	broad.mit.edu	37	5	79028077	79028077	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79028077A>C	uc003kgc.2	+	2	3561	c.3489A>C	c.(3487-3489)GAA>GAC	p.E1163D		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1163						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TAAAGGAAGAAACCAAACCTG	0.443													23	36					0	0	1	0	0	
CMYA5	202333	broad.mit.edu	37	5	79028508	79028508	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79028508C>T	uc003kgc.2	+	2	3992	c.3920C>T	c.(3919-3921)TCC>TTC	p.S1307F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1307						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAACATGATTCCAAAATAACA	0.393													6	23					0	0	1	0	0	
CMYA5	202333	broad.mit.edu	37	5	79028992	79028992	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79028992T>G	uc003kgc.2	+	2	4476	c.4404T>G	c.(4402-4404)GTT>GTG	p.V1468V		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1468						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CCAAAGAAGTTAAAGCTGGGT	0.378													45	70					0	0	1	0	0	
CMYA5	202333	broad.mit.edu	37	5	79031392	79031392	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79031392T>G	uc003kgc.2	+	2	6876	c.6804T>G	c.(6802-6804)ATT>ATG	p.I2268M		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2268						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AATCCATGATTTTATCAAATG	0.338													44	97					0	0	1	0	0	
CMYA5	202333	broad.mit.edu	37	5	79031470	79031470	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79031470C>T	uc003kgc.2	+	2	6954	c.6882C>T	c.(6880-6882)ATC>ATT	p.I2294I		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2294						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAAAAGAAATCTCAGGCGATT	0.338													49	86					0	0	1	0	0	
CMYA5	202333	broad.mit.edu	37	5	79032569	79032569	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79032569A>C	uc003kgc.2	+	2	8053	c.7981A>C	c.(7981-7983)AAG>CAG	p.K2661Q		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2661						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGTATTAGAAAAGTCAAGCAG	0.408													16	39					0	0	1	0	0	
THBS4	7060	broad.mit.edu	37	5	79378945	79378945	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79378945T>G	uc003kgh.2	+	23	3190	c.2867T>G	c.(2866-2868)TTC>TGC	p.F956C	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	956					endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		ACCCAGAATTTCGACCGCTTC	0.443											OREG0016685	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	67					0	0	1	0	0	
LOC644936	644936	broad.mit.edu	37	5	79596002	79596002	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79596002A>C	uc010jai.2	-	1	296	c.155T>G	c.(154-156)ATT>AGT	p.I52S		NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						GTCACACACAATTTCCTGCAT	0.542													19	24					0	0	1	0	0	
ZFYVE16	9765	broad.mit.edu	37	5	79732754	79732754	+	Missense_Mutation	SNP	A	G	G	rs145932207		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79732754A>G	uc003kgr.3	+	4	552	c.250A>G	c.(250-252)ACA>GCA	p.T84A	ZFYVE16_uc010jak.1_Missense_Mutation_p.T84A|ZFYVE16_uc003kgp.2_Missense_Mutation_p.T84A|ZFYVE16_uc003kgq.3_Missense_Mutation_p.T84A|ZFYVE16_uc003kgs.3_Missense_Mutation_p.T84A	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	84					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		GAATGAAAAAACACTCAAGGG	0.393													37	64					0	0	1	0	0	
ZFYVE16	9765	broad.mit.edu	37	5	79733028	79733028	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79733028T>C	uc003kgr.3	+	4	826	c.524T>C	c.(523-525)GTT>GCT	p.V175A	ZFYVE16_uc010jak.1_Missense_Mutation_p.V175A|ZFYVE16_uc003kgp.2_Missense_Mutation_p.V175A|ZFYVE16_uc003kgq.3_Missense_Mutation_p.V175A|ZFYVE16_uc003kgs.3_Missense_Mutation_p.V175A	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	175					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		ACTCCCTGTGTTTCTTCAACA	0.338													35	61					0	0	1	0	0	
ZFYVE16	9765	broad.mit.edu	37	5	79746389	79746389	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79746389T>C	uc003kgr.3	+	10	3668	c.3366T>C	c.(3364-3366)TAT>TAC	p.Y1122Y	ZFYVE16_uc003kgp.2_Silent_p.Y1122Y|ZFYVE16_uc003kgq.3_Silent_p.Y1122Y|ZFYVE16_uc003kgs.3_Silent_p.Y1122Y|ZFYVE16_uc003kgt.3_Silent_p.Y210Y	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	1122					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		TCACCATATATAAGGATGCTC	0.348													54	105					0	0	1	0	0	
ZFYVE16	9765	broad.mit.edu	37	5	79752310	79752310	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:79752310A>C	uc003kgr.3	+	13	4023	c.3721A>C	c.(3721-3723)AAT>CAT	p.N1241H	ZFYVE16_uc003kgq.3_Missense_Mutation_p.N1241H|ZFYVE16_uc003kgs.3_Missense_Mutation_p.N1241H|ZFYVE16_uc003kgt.3_Missense_Mutation_p.N329H|ZFYVE16_uc003kgu.3_5'UTR	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	1241					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		TACCTTGCATAATATAGATCA	0.299													34	69					0	0	1	0	0	
MSH3	4437	broad.mit.edu	37	5	80064742	80064742	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:80064742G>A	uc003kgz.2	+	15	2426	c.2173G>A	c.(2173-2175)GAG>AAG	p.E725K		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	725					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		TGTTATTGACGAGATCCGAAT	0.328								MMR					33	58					0	0	1	0	0	
MSH3	4437	broad.mit.edu	37	5	80109451	80109451	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:80109451A>C	uc003kgz.2	+	20	2957	c.2704A>C	c.(2704-2706)AAG>CAG	p.K902Q		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	902	ATP (Potential).				maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		CATGGGTGGAAAGAGCTCCTA	0.393								MMR					44	82					0	0	1	0	0	
RASGRF2	5924	broad.mit.edu	37	5	80422905	80422905	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:80422905A>G	uc003kha.1	+	17	2609	c.2609A>G	c.(2608-2610)GAC>GGC	p.D870G	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	870					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CAGACGGCGGACAATGCCCAC	0.468													21	43					0	0	1	0	0	
RASGRF2	5924	broad.mit.edu	37	5	80497154	80497154	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:80497154C>T	uc003kha.1	+	19	2799	c.2799C>T	c.(2797-2799)TTC>TTT	p.F933F	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	933					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		TACAGGATTTCGAACTCAACA	0.368													32	56					0	0	1	0	0	
CKMT2	1160	broad.mit.edu	37	5	80559356	80559356	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:80559356G>A	uc003khc.3	+	10	1303	c.1061G>A	c.(1060-1062)CGT>CAT	p.R354H	RNU5E_uc011cto.1_Intron|CKMT2_uc010jaq.2_Missense_Mutation_p.R354H|CKMT2_uc003khd.3_Missense_Mutation_p.R354H|uc003khe.1_Intron|uc003khf.1_Intron|uc003khg.1_Intron	NM_001825	NP_001816	P17540	KCRS_HUMAN	sarcomeric mitochondrial creatine kinase	354	Phosphagen kinase C-terminal.|ATP.				creatine metabolic process|muscle contraction	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;2.29e-44)|Epithelial(54;1.05e-38)|all cancers(79;4.15e-34)	Creatine(DB00148)	CTCCAGAAGCGTGGCACAGGT	0.453													47	67					0	0	1	0	0	
ACOT12	134526	broad.mit.edu	37	5	80639678	80639678	+	Nonsense_Mutation	SNP	C	A	A	rs149926544		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:80639678C>A	uc003khl.3	-	10	1058	c.1003G>T	c.(1003-1005)GAA>TAA	p.E335*	RNU5E_uc011cto.1_Intron	NM_130767	NP_570123	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	335					acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(1)|kidney(1)	2		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		GGAACCTCTTCTTTGTGGGAA	0.318													16	44					3.41278e-10	3.69662e-10	1	1	0	
RPS23	6228	broad.mit.edu	37	5	81573622	81573622	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:81573622T>G	uc003khu.2	-	2	147	c.54A>C	c.(52-54)CGA>CGC	p.R18R	ATP6AP1L_uc003khv.2_5'Flank	NM_001025	NP_001016	P62266	RS23_HUMAN	ribosomal protein S23	18					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|structural constituent of ribosome				0		Lung NSC(167;0.0025)|all_lung(232;0.00278)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;1.94e-42)|Epithelial(54;8.38e-37)|all cancers(79;1.42e-31)		ACTTCTGGTCTCGTCGGTGAC	0.448													35	61					0	0	1	0	0	
VCAN	1462	broad.mit.edu	37	5	82815188	82815188	+	Missense_Mutation	SNP	G	A	A	rs143128206	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:82815188G>A	uc003kii.3	+	7	1419	c.1063G>A	c.(1063-1065)GAT>AAT	p.D355N	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.D355N|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	355	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TACAACCATCGATTTGAGTAT	0.368													100	34					0	0	1	0	0	
VCAN	1462	broad.mit.edu	37	5	82833723	82833723	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:82833723C>A	uc003kii.3	+	8	5257	c.4901C>A	c.(4900-4902)TCT>TAT	p.S1634Y	VCAN_uc003kij.3_Missense_Mutation_p.S647Y|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.S298Y	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1634	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TCAGGGAGTTCTTCGATTCCA	0.418													31	48					7.01153e-11	7.64216e-11	1	1	0	
VCAN	1462	broad.mit.edu	37	5	82834640	82834640	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:82834640G>A	uc003kii.3	+	8	6174	c.5818G>A	c.(5818-5820)GAA>AAA	p.E1940K	VCAN_uc003kij.3_Missense_Mutation_p.E953K|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.E604K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1940	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TGACTTTAGAGAATACTCAAC	0.438													45	91					0	0	1	0	0	
VCAN	1462	broad.mit.edu	37	5	82834920	82834920	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:82834920T>G	uc003kii.3	+	8	6454	c.6098T>G	c.(6097-6099)TTT>TGT	p.F2033C	VCAN_uc003kij.3_Missense_Mutation_p.F1046C|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.F697C	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2033	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GTGCAAAAGTTTTCTGGTACA	0.483													18	36					0	0	1	0	0	
RASA1	5921	broad.mit.edu	37	5	86686667	86686667	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:86686667A>C	uc003kiw.2	+	25	3229	c.3111A>C	c.(3109-3111)CAA>CAC	p.Q1037H	RASA1_uc010jav.2_RNA|RASA1_uc003kix.2_Missense_Mutation_p.Q860H|RASA1_uc011ctv.1_Missense_Mutation_p.Q870H|RASA1_uc011ctw.1_Missense_Mutation_p.Q871H|RASA1_uc010jaw.2_Missense_Mutation_p.Q859H	NM_002890	NP_002881	P20936	RASA1_HUMAN	RAS p21 protein activator 1 isoform 1	1037					cytokinesis|embryo development|intracellular signal transduction|negative regulation of cell-matrix adhesion|negative regulation of neuron apoptosis|negative regulation of Ras protein signal transduction|positive regulation of anti-apoptosis|regulation of actin filament polymerization|regulation of cell shape|regulation of RNA metabolic process|vasculogenesis	cytosol|intrinsic to internal side of plasma membrane	glycoprotein binding|GTPase binding|potassium channel inhibitor activity|Ras GTPase activator activity|receptor binding			upper_aerodigestive_tract(3)|ovary(1)|lung(1)	5		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;4.72e-41)|Epithelial(54;1.51e-36)|all cancers(79;3.76e-31)		AACAAAAACAAAACCAGTATA	0.393													25	39					0	0	1	0	0	
TMEM161B	153396	broad.mit.edu	37	5	87498828	87498828	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:87498828T>C	uc003kjc.2	-	9	990	c.865A>G	c.(865-867)ACC>GCC	p.T289A	TMEM161B_uc011cty.1_Missense_Mutation_p.T278A|TMEM161B_uc010jax.2_RNA|TMEM161B_uc011ctz.1_Missense_Mutation_p.T156A|TMEM161B_uc011ctx.1_Missense_Mutation_p.T107A	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B	289						integral to membrane				skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		TAGTCTTTGGTGATTGGTTTT	0.353													39	85					0	0	1	0	0	
CETN3	1070	broad.mit.edu	37	5	89695264	89695264	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:89695264C>T	uc003kjo.2	-	4	496	c.371G>A	c.(370-372)CGA>CAA	p.R124Q		NM_004365	NP_004356	O15182	CETN3_HUMAN	centrin 3	124	EF-hand 3.				cell division|centrosome cycle|mitosis	centriole	calcium ion binding				0		all_cancers(142;7.93e-09)|all_epithelial(76;2.13e-11)|Lung NSC(167;2.46e-05)|all_lung(232;3.25e-05)|Ovarian(174;0.00832)|Colorectal(57;0.122)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(54;1.42e-32)|Epithelial(54;1.45e-26)|all cancers(79;2.87e-23)		AGCAACACGTCGCAAATTCCT	0.358													32	56					0	0	1	0	0	
LYSMD3	116068	broad.mit.edu	37	5	89814712	89814712	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:89814712A>G	uc003kjr.2	-	3	993	c.845T>C	c.(844-846)ATA>ACA	p.I282T	LYSMD3_uc010jaz.1_Missense_Mutation_p.Y124H|LYSMD3_uc003kjs.1_3'UTR	NM_198273	NP_938014	Q7Z3D4	LYSM3_HUMAN	LysM, putative peptidoglycan-binding, domain	282	Cytoplasmic (Potential).				cell wall macromolecule catabolic process	integral to membrane					0		all_cancers(142;5.03e-09)|all_epithelial(76;1.23e-11)|Lung NSC(167;2.46e-05)|all_lung(232;3.25e-05)|Ovarian(174;0.00832)|Colorectal(57;0.122)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(54;1.94e-31)|Epithelial(54;5.22e-26)|all cancers(79;2.42e-22)		GCTGAAATGTATTCCTTTAGT	0.373													51	87					0	0	1	0	0	
LYSMD3	116068	broad.mit.edu	37	5	89821102	89821102	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:89821102G>A	uc003kjr.2	-	2	153	c.5C>T	c.(4-6)GCA>GTA	p.A2V	LYSMD3_uc010jaz.1_Missense_Mutation_p.A2V|LYSMD3_uc003kjs.1_Missense_Mutation_p.A2V	NM_198273	NP_938014	Q7Z3D4	LYSM3_HUMAN	LysM, putative peptidoglycan-binding, domain	2	Extracellular (Potential).				cell wall macromolecule catabolic process	integral to membrane					0		all_cancers(142;5.03e-09)|all_epithelial(76;1.23e-11)|Lung NSC(167;2.46e-05)|all_lung(232;3.25e-05)|Ovarian(174;0.00832)|Colorectal(57;0.122)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(54;1.94e-31)|Epithelial(54;5.22e-26)|all cancers(79;2.42e-22)		ATGCCTCCCTGCCATAATGTT	0.398													11	33					0	0	1	0	0	
GPR98	84059	broad.mit.edu	37	5	89948166	89948166	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:89948166T>G	uc003kju.2	+	19	3516	c.3420T>G	c.(3418-3420)ATT>ATG	p.I1140M	GPR98_uc003kjt.2_Translation_Start_Site	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1140	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTTGTAGGATTTTGAGGCACC	0.353													47	95					0	0	1	0	0	
GPR98	84059	broad.mit.edu	37	5	89986685	89986685	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:89986685C>T	uc003kju.2	+	31	6874	c.6778C>T	c.(6778-6780)CGA>TGA	p.R2260*	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2260	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GCCAATAATTCGAAATTCTGG	0.438													10	24					0	0	1	0	0	
GPR98	84059	broad.mit.edu	37	5	90136657	90136657	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:90136657C>T	uc003kju.2	+	78	16970	c.16874C>T	c.(16873-16875)TCG>TTG	p.S5625L	GPR98_uc003kjt.2_Missense_Mutation_p.S3331L|GPR98_uc003kjw.2_Missense_Mutation_p.S1286L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5625	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GATGCAGATTCGCAGGCCATT	0.468													25	63					0	0	1	0	0	
ARRDC3	57561	broad.mit.edu	37	5	90669530	90669530	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:90669530G>A	uc003kjz.2	-	7	1399	c.1159C>T	c.(1159-1161)CGA>TGA	p.R387*		NM_020801	NP_065852	Q96B67	ARRD3_HUMAN	arrestin domain containing 3	387					signal transduction	cytoplasm	protein binding			ovary(1)|breast(1)	2		all_cancers(142;2.22e-05)|all_epithelial(76;1.58e-07)|all_lung(232;0.000521)|Lung NSC(167;0.000548)|Ovarian(174;0.0798)|Colorectal(57;0.207)		OV - Ovarian serous cystadenocarcinoma(54;4.56e-30)|Epithelial(54;7.55e-26)|all cancers(79;3.63e-22)		GGCAAGAATCGAAACTCCTGG	0.423													36	81					0	0	1	0	0	
ARRDC3	57561	broad.mit.edu	37	5	90678662	90678662	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:90678662T>C	uc003kjz.2	-	1	488	c.248A>G	c.(247-249)AAC>AGC	p.N83S	LOC100129716_uc003kka.3_Intron	NM_020801	NP_065852	Q96B67	ARRD3_HUMAN	arrestin domain containing 3	83					signal transduction	cytoplasm	protein binding			ovary(1)|breast(1)	2		all_cancers(142;2.22e-05)|all_epithelial(76;1.58e-07)|all_lung(232;0.000521)|Lung NSC(167;0.000548)|Ovarian(174;0.0798)|Colorectal(57;0.207)		OV - Ovarian serous cystadenocarcinoma(54;4.56e-30)|Epithelial(54;7.55e-26)|all cancers(79;3.63e-22)		GTCTTTATGGTTGAAATACTC	0.388													9	162					0	0	1	0	0	
TTC37	9652	broad.mit.edu	37	5	94863782	94863782	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:94863782C>T	uc003klb.2	-	13	1339	c.1069G>A	c.(1069-1071)GCA>ACA	p.A357T	TTC37_uc010jbf.1_Missense_Mutation_p.A309T	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	357							binding			ovary(3)|pancreas(1)	4						AAAGCCTCTGCTTTCAAATGA	0.378													32	72					0	0	1	0	0	
SPATA9	83890	broad.mit.edu	37	5	95011265	95011265	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:95011265G>A	uc003klj.1	-	3	385	c.229C>T	c.(229-231)CGT>TGT	p.R77C	SPATA9_uc010jbh.1_RNA|SPATA9_uc003klh.1_RNA|SPATA9_uc003kli.1_Intron	NM_031952	NP_114158	Q9BWV2	SPAT9_HUMAN	spermatogenesis associated 9	77					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane					0		all_cancers(142;1.28e-06)|all_epithelial(76;1.55e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)|Colorectal(57;0.0846)|Breast(839;0.198)		all cancers(79;8.91e-16)		TTTAATCCACGAATTAATGTT	0.408													34	54					0	0	1	0	0	
CAST	831	broad.mit.edu	37	5	96064902	96064902	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:96064902G>T	uc003klz.1	+	5	337	c.175G>T	c.(175-177)GAA>TAA	p.E59*	CAST_uc003klt.2_Nonsense_Mutation_p.E59*|CAST_uc003klu.2_Nonsense_Mutation_p.E142*|CAST_uc003klv.2_Nonsense_Mutation_p.E120*|CAST_uc003klw.2_Intron|CAST_uc003klx.2_Intron|CAST_uc003kly.2_Nonsense_Mutation_p.E120*|CAST_uc011cuo.1_Nonsense_Mutation_p.E105*|CAST_uc011cup.1_Nonsense_Mutation_p.E37*|CAST_uc011cuq.1_Intron|CAST_uc011cur.1_Nonsense_Mutation_p.E45*|CAST_uc011cus.1_Nonsense_Mutation_p.E59*|CAST_uc003kma.1_Intron|CAST_uc011cut.1_Nonsense_Mutation_p.E37*|CAST_uc003kmb.2_Intron|CAST_uc003kmc.2_Nonsense_Mutation_p.E59*|CAST_uc003kmd.2_Nonsense_Mutation_p.E37*|CAST_uc003kme.2_Intron|CAST_uc003kmf.2_Nonsense_Mutation_p.E37*	NM_001042443	NP_001035908	P20810	ICAL_HUMAN	calpastatin isoform i	59							calcium-dependent cysteine-type endopeptidase inhibitor activity|protein binding			central_nervous_system(3)|ovary(1)|kidney(1)	5		all_cancers(142;5.27e-07)|all_epithelial(76;8.21e-10)|all_lung(232;0.000396)|Lung NSC(167;0.000539)|Ovarian(225;0.024)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;6.85e-15)		AAAGCCAAAAGAACACACAGA	0.323													21	41					2.41591e-17	2.79654e-17	1	1	0	
ERAP1	51752	broad.mit.edu	37	5	96117444	96117444	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:96117444T>G	uc003kmm.2	-	16	2747	c.2400A>C	c.(2398-2400)CAA>CAC	p.Q800H	ERAP1_uc003kml.2_Missense_Mutation_p.Q800H|ERAP1_uc010jbm.1_Missense_Mutation_p.Q612H|ERAP1_uc003kmn.2_Missense_Mutation_p.Q800H	NM_001040458	NP_001035548	Q9NZ08	ERAP1_HUMAN	type 1 tumor necrosis factor receptor shedding	800	Lumenal (Potential).				angiogenesis|antigen processing and presentation of endogenous peptide antigen via MHC class I|fat cell differentiation|membrane protein ectodomain proteolysis|regulation of blood pressure|regulation of innate immune response|response to bacterium	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|integral to membrane	aminopeptidase activity|interleukin-1, Type II receptor binding|interleukin-6 receptor binding|metalloexopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		all_cancers(142;1.75e-06)|all_epithelial(76;3.08e-09)|all_lung(232;0.000435)|Lung NSC(167;0.000601)|Ovarian(225;0.024)|Colorectal(57;0.0432)|Breast(839;0.244)		all cancers(79;7.26e-15)|COAD - Colon adenocarcinoma(37;0.071)		CAAATTCAATTTGGCTTTTCT	0.418													35	86					0	0	1	0	0	
RGMB	285704	broad.mit.edu	37	5	98129003	98129003	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:98129003G>A	uc003knc.2	+	5	1385	c.983G>A	c.(982-984)CGC>CAC	p.R328H		NM_001012761	NP_001012779	Q6NW40	RGMB_HUMAN	RGM domain family, member B	287					axon guidance|BMP signaling pathway|cell adhesion|positive regulation of transcription, DNA-dependent	anchored to plasma membrane|ER-Golgi intermediate compartment|membrane raft	identical protein binding				0		all_cancers(142;2.76e-08)|all_epithelial(76;2.98e-11)|all_lung(232;0.000485)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0587)		CAGGTGGGTCGCTACCTGACC	0.597													8	25					0	0	1	0	0	
CHD1	1105	broad.mit.edu	37	5	98209305	98209305	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:98209305T>C	uc003knf.2	-	25	3711	c.3563A>G	c.(3562-3564)GAA>GGA	p.E1188G	CHD1_uc010jbn.2_5'UTR	NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	1188					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	ACCTGTTCGTTCTGTTCCTGA	0.318													23	57					0	0	1	0	0	
LOC100133050	100133050	broad.mit.edu	37	5	99715481	99715481	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:99715481G>A	uc011cuw.1	-	4		c.429C>T				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGGTGTTGGCGCCAAGCCAGC	0.577													5	11					0	0	1	0	0	
SLCO4C1	353189	broad.mit.edu	37	5	101592925	101592925	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:101592925T>C	uc003knm.2	-	8	1650	c.1363A>G	c.(1363-1365)AAG>GAG	p.K455E		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	455	Helical; Name=9; (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		AGTGCAAACTTCATTGTGTTT	0.373													13	37					0	0	1	0	0	
SLCO6A1	133482	broad.mit.edu	37	5	101735385	101735385	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:101735385A>C	uc003knn.2	-	10	1860	c.1688T>G	c.(1687-1689)TTT>TGT	p.F563C	SLCO6A1_uc003kno.2_Missense_Mutation_p.F310C|SLCO6A1_uc003knp.2_Missense_Mutation_p.F563C|SLCO6A1_uc003knq.2_Missense_Mutation_p.F501C	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	563	Extracellular (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		GGCATCAATAAAATCACCTTC	0.338													29	61					0	0	1	0	0	
SLCO6A1	133482	broad.mit.edu	37	5	101795417	101795417	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:101795417C>T	uc003knn.2	-	5	1136	c.964G>A	c.(964-966)GCT>ACT	p.A322T	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Missense_Mutation_p.A322T|SLCO6A1_uc003knq.2_Missense_Mutation_p.A260T	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	322	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		GCAACGACAGCGGCAAAAAGA	0.328													25	61					0	0	1	0	0	
NUDT12	83594	broad.mit.edu	37	5	102895125	102895125	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:102895125T>C	uc003koi.2	-	3	344	c.251A>G	c.(250-252)GAC>GGC	p.D84G	NUDT12_uc011cvb.1_Missense_Mutation_p.D66G|NUDT12_uc010jbq.1_3'UTR	NM_031438	NP_113626	Q9BQG2	NUD12_HUMAN	nudix-type motif 12	84	ANK 3.					nucleus|peroxisome	metal ion binding|NAD+ diphosphatase activity				0		all_cancers(142;6.38e-08)|all_epithelial(76;1.99e-10)|Prostate(80;0.0138)|Lung NSC(167;0.0212)|Colorectal(57;0.0247)|all_lung(232;0.0283)|Ovarian(225;0.0423)		Epithelial(69;9.3e-13)|COAD - Colon adenocarcinoma(37;0.0221)		TACAGCAATGTCCAGTGCAGT	0.373													36	55					0	0	1	0	0	
FBXL17	64839	broad.mit.edu	37	5	107216831	107216831	+	Silent	SNP	G	A	A	rs143348449	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:107216831G>A	uc011cvc.1	-	8	2279	c.1872C>T	c.(1870-1872)GTC>GTT	p.V624V	FBXL17_uc003kon.3_Silent_p.V226V	NM_001163315	NP_001156787	Q9UF56	FXL17_HUMAN	F-box and leucine-rich repeat protein 17	624											0		all_cancers(142;0.00273)|all_epithelial(76;0.000362)|Prostate(80;0.0115)|Myeloproliferative disorder(839;0.0393)|Ovarian(225;0.232)		OV - Ovarian serous cystadenocarcinoma(64;9.63e-11)|Epithelial(69;4.02e-10)		TACACCATCCGACATCCACAG	0.468													44	82					0	0	1	0	0	
FER	2241	broad.mit.edu	37	5	108203635	108203635	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:108203635G>T	uc003kop.1	+	6	1033	c.649G>T	c.(649-651)GAA>TAA	p.E217*	FER_uc011cve.1_Nonsense_Mutation_p.E157*|FER_uc011cvf.1_RNA|FER_uc011cvg.1_Nonsense_Mutation_p.E42*	NM_005246	NP_005237	P16591	FER_HUMAN	fer (fps/fes related) tyrosine kinase	217	Important for interaction with membranes containing phosphoinositides.				intracellular signal transduction|peptidyl-tyrosine phosphorylation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|kidney(1)	5		all_cancers(142;2.86e-06)|all_epithelial(76;9.81e-08)|Prostate(80;0.00972)|Lung NSC(167;0.039)|Ovarian(225;0.0448)|all_lung(232;0.0496)|Colorectal(57;0.0986)|Breast(839;0.152)		OV - Ovarian serous cystadenocarcinoma(64;6.77e-10)|Epithelial(69;4.13e-08)|COAD - Colon adenocarcinoma(37;0.0174)		GATGCAAGAAGAAATGATAAA	0.353													17	43					3.32936e-07	3.48551e-07	1	1	0	
MAN2A1	4124	broad.mit.edu	37	5	109155379	109155379	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:109155379C>T	uc003kou.1	+	14	3082	c.2119C>T	c.(2119-2121)CGA>TGA	p.R707*		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	707	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		GATCTCTTTTCGAGCACATAT	0.308													32	71					0	0	1	0	0	
MAN2A1	4124	broad.mit.edu	37	5	109183456	109183456	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:109183456C>T	uc003kou.1	+	19	3904	c.2941C>T	c.(2941-2943)CGA>TGA	p.R981*		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	981	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		TAATCTATTTCGAATACTACT	0.343													24	39					0	0	1	0	0	
WDR36	134430	broad.mit.edu	37	5	110445966	110445966	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:110445966T>C	uc003kpd.2	+	13	1690	c.1573T>C	c.(1573-1575)TCT>CCT	p.S525P	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	525	WD 6.				response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		TAACATGCAGTCTGGCATACA	0.353													17	131					0	0	1	0	0	
EPB41L4A	64097	broad.mit.edu	37	5	111754705	111754705	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:111754705A>C	uc003kpv.1	-	1	306	c.32T>G	c.(31-33)TTT>TGT	p.F11C	EPB41L4A_uc003kpw.1_Missense_Mutation_p.F11C|FLJ11235_uc003kpx.1_5'Flank	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	11	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		TTCGCAGTAAAATTCTTCCGG	0.602													26	34					0	0	1	0	0	
APC	324	broad.mit.edu	37	5	112151261	112151261	+	Nonsense_Mutation	SNP	C	T	T	rs137854568		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112151261C>T	uc010jby.2	+	9	1284	c.904C>T	c.(904-906)CGA>TGA	p.R302*	APC_uc011cvt.1_Nonsense_Mutation_p.R284*|APC_uc003kpz.3_Nonsense_Mutation_p.R302*|APC_uc003kpy.3_Nonsense_Mutation_p.R302*|APC_uc010jbz.2_Nonsense_Mutation_p.R19*	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	302	Leu-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.R302*(10)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		CTCTGCACCTCGAAGGCTGAC	0.388		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			18	47					0	0	1	0	0	
APC	324	broad.mit.edu	37	5	112173621	112173621	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112173621A>G	uc010jby.2	+	16	2710	c.2330A>G	c.(2329-2331)GAC>GGC	p.D777G	APC_uc011cvt.1_Missense_Mutation_p.D759G|APC_uc003kpz.3_Missense_Mutation_p.D777G|APC_uc003kpy.3_Missense_Mutation_p.D777G|APC_uc010jbz.2_Missense_Mutation_p.D494G|APC_uc010jca.2_Missense_Mutation_p.D77G	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	777	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.D777fs*2(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GACAATATAGACAATTTAAGT	0.393		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			43	68					0	0	1	0	0	
APC	324	broad.mit.edu	37	5	112174393	112174393	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112174393G>A	uc010jby.2	+	16	3482	c.3102G>A	c.(3100-3102)GAG>GAA	p.E1034E	APC_uc011cvt.1_Silent_p.E1016E|APC_uc003kpz.3_Silent_p.E1034E|APC_uc003kpy.3_Silent_p.E1034E|APC_uc010jbz.2_Silent_p.E751E|APC_uc010jca.2_Silent_p.E334E	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1034	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		ATTCAGATGAGCAGTTGAACT	0.358		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			35	51					0	0	1	0	0	
APC	324	broad.mit.edu	37	5	112174916	112174916	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112174916G>T	uc010jby.2	+	16	4005	c.3625G>T	c.(3625-3627)GAA>TAA	p.E1209*	APC_uc011cvt.1_Nonsense_Mutation_p.E1191*|APC_uc003kpz.3_Nonsense_Mutation_p.E1209*|APC_uc003kpy.3_Nonsense_Mutation_p.E1209*|APC_uc010jbz.2_Nonsense_Mutation_p.E926*|APC_uc010jca.2_Nonsense_Mutation_p.E509*	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1209	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.E1209V(1)|p.K1192fs*3(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		CAGTAAAACCGAACATATGTC	0.398		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			50	71					2.64894e-19	3.11158e-19	1	1	0	
APC	324	broad.mit.edu	37	5	112175639	112175639	+	Nonsense_Mutation	SNP	C	T	T	rs121913332		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112175639C>T	uc010jby.2	+	16	4728	c.4348C>T	c.(4348-4350)CGA>TGA	p.R1450*	APC_uc011cvt.1_Nonsense_Mutation_p.R1432*|APC_uc003kpz.3_Nonsense_Mutation_p.R1450*|APC_uc003kpy.3_Nonsense_Mutation_p.R1450*|APC_uc010jbz.2_Nonsense_Mutation_p.R1167*|APC_uc010jca.2_Nonsense_Mutation_p.R750*	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1450	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.R1450*(115)|p.?(1)|p.P1424fs*19(1)|p.K1192fs*3(1)|p.R1450fs*22(1)|p.S1436fs*22(1)|p.R1450fs*5(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TCAAACCAAGCGAGAAGTACC	0.478	R1450*(SW837_LARGE_INTESTINE)|R1450*(LS123_LARGE_INTESTINE)|R1450*(SW1417_LARGE_INTESTINE)|R1450*(MKN74_STOMACH)	12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			31	58					0	0	1	0	0	
APC	324	broad.mit.edu	37	5	112177901	112177901	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112177901C>T	uc010jby.2	+	16	6990	c.6610C>T	c.(6610-6612)CGA>TGA	p.R2204*	APC_uc011cvt.1_Nonsense_Mutation_p.R2186*|APC_uc003kpz.3_Nonsense_Mutation_p.R2204*|APC_uc003kpy.3_Nonsense_Mutation_p.R2204*|APC_uc010jbz.2_Nonsense_Mutation_p.R1921*|APC_uc010jca.2_Nonsense_Mutation_p.R1504*	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	2204	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TGGAAAAGTTCGATCTAATTC	0.363		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			34	72					0	0	1	0	0	
REEP5	7905	broad.mit.edu	37	5	112222851	112222851	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112222851C>T	uc003kqe.1	-	4	525	c.381G>A	c.(379-381)CCG>CCA	p.P127P	SRP19_uc011cvu.1_Intron|SRP19_uc011cvv.1_Intron|REEP5_uc011cvw.1_Silent_p.P100P|REEP5_uc011cvx.1_RNA|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_RNA	NM_005669	NP_005660	Q00765	REEP5_HUMAN	receptor accessory protein 5	127						integral to membrane	protein binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		Epithelial(69;1.3e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.26e-08)|all cancers(49;3.56e-07)|Colorectal(14;0.00778)|COAD - Colon adenocarcinoma(37;0.013)		TAGAAGGGCTCGGGGCCATGC	0.537													13	42					0	0	1	0	0	
DCP2	167227	broad.mit.edu	37	5	112321534	112321534	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112321534G>A	uc003kqh.2	+	2	254	c.56G>A	c.(55-57)CGA>CAA	p.R19Q	DCP2_uc011cwa.1_Intron	NM_152624	NP_689837	Q8IU60	DCP2_HUMAN	DCP2 decapping enzyme	19					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus|RNA-induced silencing complex	exoribonuclease activity, producing 5'-phosphomonoesters|manganese ion binding|protein binding|protein binding|RNA binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		OV - Ovarian serous cystadenocarcinoma(64;6.98e-08)|Epithelial(69;7.87e-08)|all cancers(49;1.06e-05)|COAD - Colon adenocarcinoma(37;0.0123)|Colorectal(14;0.0171)		TTTGACAGCCGATTTATTTTG	0.358													37	77					0	0	1	0	0	
TSSK1B	83942	broad.mit.edu	37	5	112770308	112770308	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112770308C>T	uc003kqm.2	-	1	421	c.229G>A	c.(229-231)GAG>AAG	p.E77K	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	77	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		TCAAAGATCTCGTAGGTCTTA	0.532													17	41					0	0	1	0	0	
YTHDC2	64848	broad.mit.edu	37	5	112862484	112862484	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112862484T>C	uc003kqn.2	+	4	858	c.675_splice	c.e4+2	p.Q225_splice	YTHDC2_uc010jce.1_Splice_Site_p.Q225_splice|YTHDC2_uc010jcf.1_Intron	NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2								ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		ACCACACAGGTTTGTTTCTTT	0.239													18	32					0	0	1	0	0	
YTHDC2	64848	broad.mit.edu	37	5	112896785	112896785	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:112896785G>A	uc003kqn.2	+	18	2408	c.2225G>A	c.(2224-2226)CGA>CAA	p.R742Q	YTHDC2_uc010jcf.1_Missense_Mutation_p.R442Q	NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	742	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		AGGGCAGGGCGATGTAGACCT	0.328													17	22					0	0	1	0	0	
AQPEP	206338	broad.mit.edu	37	5	115298524	115298524	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:115298524G>A	uc003kro.2	+	1	374	c.210G>A	c.(208-210)CCG>CCA	p.P70P	AQPEP_uc003krp.2_RNA|uc003krn.1_5'UTR	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	70	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						CGCCAACCCCGAAACCCAGCA	0.706													13	40					0	0	1	0	0	
DMXL1	1657	broad.mit.edu	37	5	118485264	118485264	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:118485264G>T	uc003ksd.2	+	18	3923	c.3742G>T	c.(3742-3744)GAA>TAA	p.E1248*	DMXL1_uc010jcl.1_Nonsense_Mutation_p.E1248*	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1248	WD 10.									ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TTCTAAACAAGAACCTGTTAT	0.413													53	92					2.01872e-29	2.46164e-29	1	1	0	
DMXL1	1657	broad.mit.edu	37	5	118503325	118503325	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:118503325C>A	uc003ksd.2	+	23	5345	c.5164C>A	c.(5164-5166)CAG>AAG	p.Q1722K	DMXL1_uc010jcl.1_Missense_Mutation_p.Q1722K	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1722										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		GAATGACATTCAGTTGGCTCT	0.299													7	19					2.7689e-08	2.93819e-08	1	1	0	
HSD17B4	3295	broad.mit.edu	37	5	118861613	118861613	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:118861613T>C	uc003ksj.2	+	19	1698	c.1575T>C	c.(1573-1575)GGT>GGC	p.G525G	HSD17B4_uc011cwg.1_Silent_p.G501G|HSD17B4_uc011cwh.1_Silent_p.G507G|HSD17B4_uc011cwi.1_Silent_p.G550G|HSD17B4_uc003ksk.3_Silent_p.G378G|HSD17B4_uc011cwj.1_Silent_p.G378G|HSD17B4_uc010jcn.1_Silent_p.G263G|HSD17B4_uc010jco.1_5'UTR	NM_000414	NP_000405	P51659	DHB4_HUMAN	hydroxysteroid (17-beta) dehydrogenase 4	525	MaoC-like.|Enoyl-CoA hydratase 2.				bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3-hydroxyacyl-CoA dehydrogenase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity|estradiol 17-beta-dehydrogenase activity|isomerase activity|long-chain-enoyl-CoA hydratase activity|protein binding|sterol binding|sterol transporter activity			ovary(1)|pancreas(1)	2		all_cancers(142;0.0206)|Prostate(80;0.0322)		OV - Ovarian serous cystadenocarcinoma(64;0.000247)|Epithelial(69;0.000849)|all cancers(49;0.0122)	NADH(DB00157)	TTTTCCTAGGTTTTGACAAGC	0.358													25	55					0	0	1	0	0	
FAM170A	340069	broad.mit.edu	37	5	118969821	118969821	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:118969821G>T	uc003ksm.2	+	3	588	c.378G>T	c.(376-378)ATG>ATT	p.M126I	FAM170A_uc003ksl.2_Missense_Mutation_p.M126I|FAM170A_uc003ksn.2_Missense_Mutation_p.M126I|FAM170A_uc003kso.2_Missense_Mutation_p.M79I	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	126						intracellular	zinc ion binding			skin(1)	1						AAAGGGGCATGAAAATATACT	0.463													27	60					9.39395e-14	1.05303e-13	1	1	0	
PRR16	51334	broad.mit.edu	37	5	119800232	119800232	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:119800232A>G	uc003ksq.2	+	1	214	c.51A>G	c.(49-51)GGA>GGG	p.G17G	PRR16_uc003ksp.2_5'UTR	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	17										pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		CAGCCGAGGGACCGCCGGCAG	0.607													5	9					0	0	1	0	0	
SNCAIP	9627	broad.mit.edu	37	5	121759111	121759111	+	Missense_Mutation	SNP	G	A	A	rs140366495		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:121759111G>A	uc003ksw.1	+	4	885	c.679G>A	c.(679-681)GAC>AAC	p.D227N	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.D227N|SNCAIP_uc003ksx.1_Missense_Mutation_p.D274N|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.D227N	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	227					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TGTCATCCACGACCAGCACAA	0.463													41	78					0	0	1	0	0	
SNX2	6643	broad.mit.edu	37	5	122137575	122137575	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:122137575A>C	uc003kte.2	+	4	451	c.402A>C	c.(400-402)GAA>GAC	p.E134D	SNX2_uc011cwn.1_Missense_Mutation_p.E17D	NM_003100	NP_003091	O60749	SNX2_HUMAN	sorting nexin 2	134					cell communication|endocytosis|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding|protein transporter activity			kidney(1)	1		all_cancers(142;1.14e-44)|all_lung(232;1.03e-13)|Lung NSC(810;2.5e-13)|Breast(839;0.000812)|Myeloproliferative disorder(839;0.0122)|Prostate(80;0.0235)|all_hematologic(541;0.0592)|all_neural(839;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	all cancers(49;2.13e-24)|Epithelial(69;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(64;5.6e-11)|BRCA - Breast invasive adenocarcinoma(61;0.00013)|GBM - Glioblastoma multiforme(465;0.000357)|COAD - Colon adenocarcinoma(49;0.000887)|Lung(113;0.0109)		TTGAAGAAGAAGCAAATGGAG	0.229													27	67					0	0	1	0	0	
CEP120	153241	broad.mit.edu	37	5	122724294	122724294	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:122724294G>T	uc003ktk.2	-	10	1344	c.1262C>A	c.(1261-1263)TCT>TAT	p.S421Y	CEP120_uc011cwq.1_Missense_Mutation_p.S230Y|CEP120_uc010jcz.1_Missense_Mutation_p.S395Y	NM_153223	NP_694955	Q8N960	CE120_HUMAN	coiled-coil domain containing 100	421						centrosome				ovary(1)	1						AGGTACAGAAGAACTGGCTGA	0.373													51	82					1.62263e-30	1.98456e-30	1	1	0	
CEP120	153241	broad.mit.edu	37	5	122729052	122729052	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:122729052C>T	uc003ktk.2	-	7	834	c.752G>A	c.(751-753)CGC>CAC	p.R251H	CEP120_uc011cwq.1_Missense_Mutation_p.R60H|CEP120_uc010jcz.1_Missense_Mutation_p.R225H	NM_153223	NP_694955	Q8N960	CE120_HUMAN	coiled-coil domain containing 100	251						centrosome				ovary(1)	1						GCTACGGATGCGAACTGATGC	0.403													31	74					0	0	1	0	0	
ZNF608	57507	broad.mit.edu	37	5	124080003	124080003	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:124080003C>T	uc003ktq.1	-	1	803	c.680G>A	c.(679-681)AGC>AAC	p.S227N	ZNF608_uc003ktr.1_RNA|ZNF608_uc003kts.1_Missense_Mutation_p.S227N|ZNF608_uc003ktt.1_Missense_Mutation_p.S227N	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	227						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		AGGGGCCTGGCTGCCACTGCC	0.652													33	77					0	0	1	0	0	
GRAMD3	65983	broad.mit.edu	37	5	125819236	125819236	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:125819236T>G	uc003ktu.2	+	9	1247	c.817T>G	c.(817-819)TCT>GCT	p.S273A	GRAMD3_uc011cwt.1_Missense_Mutation_p.S288A|GRAMD3_uc011cwv.1_Missense_Mutation_p.S281A|GRAMD3_uc011cww.1_Missense_Mutation_p.S169A|GRAMD3_uc011cwx.1_RNA|GRAMD3_uc011cwy.1_Missense_Mutation_p.S164A|GRAMD3_uc011cwz.1_Missense_Mutation_p.S257A|GRAMD3_uc011cwu.1_Missense_Mutation_p.S257A	NM_023927	NP_076416	Q96HH9	GRAM3_HUMAN	GRAM domain containing 3 isoform 2	273										central_nervous_system(1)	1		Prostate(80;0.0928)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0401)|OV - Ovarian serous cystadenocarcinoma(64;0.0604)|all cancers(49;0.108)		CAGTTCTGGTTCTCAAACTCC	0.398													29	53					0	0	1	0	0	
MEGF10	84466	broad.mit.edu	37	5	126791103	126791103	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:126791103G>T	uc003kuh.3	+	25	3398	c.3036G>T	c.(3034-3036)AAG>AAT	p.K1012N	MEGF10_uc003kui.3_Missense_Mutation_p.K1012N	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	1012	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		ACCTGGGAAAGAATTCTGAAT	0.388													64	145					1.02487e-32	1.25835e-32	1	1	0	
FBN2	2201	broad.mit.edu	37	5	127615904	127615904	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:127615904G>T	uc003kuu.2	-	56	7557	c.7118C>A	c.(7117-7119)TCT>TAT	p.S2373Y		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2373	EGF-like 40; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AGTGCCTGAAGAACTTGACTG	0.378													21	46					1.64113e-05	1.69216e-05	1	1	0	
FBN2	2201	broad.mit.edu	37	5	127641543	127641543	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:127641543A>C	uc003kuu.2	-	43	5959	c.5520T>G	c.(5518-5520)AGT>AGG	p.S1840R		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1840	EGF-like 29; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GGTCATTGTAACTGAATCCTG	0.378													56	88					0	0	1	0	0	
FBN2	2201	broad.mit.edu	37	5	127648405	127648405	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:127648405G>A	uc003kuu.2	-	37	5239	c.4800C>T	c.(4798-4800)GGC>GGT	p.G1600G		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1600	TB 6.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AGCGACTGACGCCCACCCCGA	0.552													143	277					0	0	1	0	0	
FBN2	2201	broad.mit.edu	37	5	127782261	127782261	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:127782261C>A	uc003kuu.2	-	7	1304	c.865G>T	c.(865-867)GGA>TGA	p.G289*	FBN2_uc003kuv.2_Nonsense_Mutation_p.G256*|FBN2_uc003kuw.3_Nonsense_Mutation_p.G289*|FBN2_uc003kux.1_Nonsense_Mutation_p.G289*	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	289	EGF-like 4; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CAGTTTCCTCCTTGGCATATC	0.408													37	86					9.62906e-15	1.09027e-14	1	1	0	
SLC27A6	28965	broad.mit.edu	37	5	128302039	128302039	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:128302039A>C	uc003kuy.2	+	2	605	c.209A>C	c.(208-210)AAA>ACA	p.K70T	SLC27A6_uc003kuz.2_Missense_Mutation_p.K70T	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	70					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		CAACCTCGGAAACCTTTCATC	0.453													39	62					0	0	1	0	0	
SLC27A6	28965	broad.mit.edu	37	5	128362977	128362977	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:128362977T>G	uc003kuy.2	+	8	1803	c.1407T>G	c.(1405-1407)GAT>GAG	p.D469E	SLC27A6_uc003kuz.2_Missense_Mutation_p.D469E	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	469					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		TAGTCCAGGATCAGGACAATT	0.388													62	114					0	0	1	0	0	
CHSY3	337876	broad.mit.edu	37	5	129520286	129520286	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:129520286G>A	uc003kvd.2	+	3	1451	c.1451G>A	c.(1450-1452)CGA>CAA	p.R484Q		NM_175856	NP_787052	Q70JA7	CHSS3_HUMAN	chondroitin sulfate synthase 3	484	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(2)|pancreas(1)	3		all_cancers(142;0.0227)|Breast(839;0.198)|Prostate(80;0.215)|Lung NSC(810;0.239)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.136)		CAGCCCCCTCGACAGAGCCTC	0.493													21	47					0	0	1	0	0	
RAPGEF6	51735	broad.mit.edu	37	5	130940376	130940376	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:130940376G>T	uc003kvn.1	-	2	286	c.80C>A	c.(79-81)ACT>AAT	p.T27N	RAPGEF6_uc003kvp.1_Missense_Mutation_p.T77N|RAPGEF6_uc003kvo.1_Missense_Mutation_p.T27N|RAPGEF6_uc010jdi.1_Missense_Mutation_p.T27N|RAPGEF6_uc010jdj.1_Missense_Mutation_p.T27N|RAPGEF6_uc003kvr.2_Missense_Mutation_p.T27N|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Missense_Mutation_p.T27N	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	27					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		AGAATAAATAGTATTTAAGTC	0.318													14	28					1.5842e-08	1.6863e-08	1	1	0	
ACSL6	23305	broad.mit.edu	37	5	131298258	131298258	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:131298258C>T	uc010jdo.1	-	18	1835	c.1752G>A	c.(1750-1752)GCG>GCA	p.A584A	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Silent_p.A609A|ACSL6_uc003kvy.1_Silent_p.A609A|ACSL6_uc003kwb.2_Silent_p.A574A|ACSL6_uc003kvz.1_Silent_p.A509A|ACSL6_uc003kwa.1_Silent_p.A595A|ACSL6_uc003kvw.1_Silent_p.A230A|ACSL6_uc010jdn.1_Silent_p.A599A	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	584	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CATAGATTTGCGCCACAGGTT	0.448													28	59					0	0	1	0	0	
ACSL6	23305	broad.mit.edu	37	5	131321104	131321104	+	Silent	SNP	C	T	T	rs148729460	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:131321104C>T	uc010jdo.1	-	9	920	c.837G>A	c.(835-837)ACG>ACA	p.T279T	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Silent_p.T304T|ACSL6_uc003kvy.1_Silent_p.T304T|ACSL6_uc003kwb.2_Silent_p.T269T|ACSL6_uc003kvz.1_Silent_p.T244T|ACSL6_uc003kwa.1_Silent_p.T290T|ACSL6_uc010jdn.1_Silent_p.T294T|ACSL6_uc010jdp.1_RNA	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	279	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCTTACCTGTCGTGCCGCTTG	0.592													12	25					0	0	1	0	0	
IRF1	3659	broad.mit.edu	37	5	131822766	131822766	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:131822766G>A	uc003kxa.2	-	4	478	c.244C>T	c.(244-246)CGC>TGC	p.R82C	IRF1_uc003kxd.2_RNA|IRF1_uc003kxb.2_Missense_Mutation_p.R82C|IRF1_uc010jdt.1_Missense_Mutation_p.R82C	NM_002198	NP_002189	P10914	IRF1_HUMAN	interferon regulatory factor 1	82	IRF tryptophan pentad repeat.				blood coagulation|cellular response to mechanical stimulus|interferon-gamma-mediated signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleoplasm					0		all_cancers(142;0.026)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	LUAD - Lung adenocarcinoma(142;0.247)		ATGGCACAGCGAAAGTTGGCC	0.557													139	291					0	0	1	0	0	
IL4	3565	broad.mit.edu	37	5	132009824	132009824	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:132009824G>A	uc003kxk.1	+	1	452	c.82G>A	c.(82-84)GAT>AAT	p.D28N	IL4_uc003kxl.1_Missense_Mutation_p.D28N	NM_000589	NP_000580	P05112	IL4_HUMAN	interleukin 4 isoform 1 precursor	28					B cell differentiation|cellular defense response|chemotaxis|cholesterol metabolic process|connective tissue growth factor biosynthetic process|negative regulation of apoptosis|negative regulation of osteoclast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of interleukin-13 production|positive regulation of isotype switching to IgE isotypes|positive regulation of isotype switching to IgG isotypes|positive regulation of MHC class II biosynthetic process|positive regulation of T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|T-helper 2 cell cytokine production	extracellular space	cytokine activity|growth factor activity|interleukin-4 receptor binding				0		all_cancers(142;2.81e-05)|all_lung(232;1.47e-05)|Lung NSC(810;2.31e-05)|all_neural(839;0.0459)|Ovarian(839;0.0481)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	GBM - Glioblastoma multiforme(465;0.00245)		ACACAAGTGCGATATCACCTT	0.498													58	90					0	0	1	0	0	
KIF3A	11127	broad.mit.edu	37	5	132034929	132034929	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:132034929T>G	uc003kxo.2	-	16	2139	c.1985A>C	c.(1984-1986)CAG>CCG	p.Q662P	KIF3A_uc003kxm.2_Missense_Mutation_p.Q244P|KIF3A_uc003kxn.2_Missense_Mutation_p.Q647P|KIF3A_uc011cxf.1_Missense_Mutation_p.Q689P|KIF3A_uc003kxp.2_Missense_Mutation_p.Q665P	NM_007054	NP_008985	Q9Y496	KIF3A_HUMAN	kinesin family member 3A	662					blood coagulation|organelle organization|plus-end-directed vesicle transport along microtubule	centrosome|cytosol|kinesin II complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|protein binding			pancreas(1)	1		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CATCAAAGACTGACGCAGACT	0.443													78	134					0	0	1	0	0	
AFF4	27125	broad.mit.edu	37	5	132216807	132216807	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:132216807G>A	uc003kyd.2	-	21	3844	c.3436C>T	c.(3436-3438)CGT>TGT	p.R1146C	AFF4_uc011cxk.1_Missense_Mutation_p.R824C	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	1146					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CGGGTATAACGAACTAGATCT	0.418													27	46					0	0	1	0	0	
PHF15	23338	broad.mit.edu	37	5	133871564	133871564	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:133871564G>A	uc003kzo.1	+	2	196	c.17G>A	c.(16-18)CGA>CAA	p.R6Q	PHF15_uc011cxt.1_Missense_Mutation_p.R6Q|PHF15_uc003kzk.2_Missense_Mutation_p.R22Q|PHF15_uc003kzl.2_Missense_Mutation_p.R6Q|PHF15_uc003kzm.2_Missense_Mutation_p.R6Q|PHF15_uc003kzn.2_Missense_Mutation_p.R6Q	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	6					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GAGAAGAGGCGAAAATACTCC	0.488													20	42					0	0	1	0	0	
PHF15	23338	broad.mit.edu	37	5	133909341	133909341	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:133909341A>C	uc003kzo.1	+	10	1620	c.1441A>C	c.(1441-1443)AAT>CAT	p.N481H	PHF15_uc011cxt.1_Missense_Mutation_p.N481H|PHF15_uc003kzk.2_Missense_Mutation_p.N497H|PHF15_uc003kzl.2_Missense_Mutation_p.N481H|PHF15_uc003kzm.2_Missense_Mutation_p.N481H|PHF15_uc003kzn.2_Intron|PHF15_uc003kzp.2_Missense_Mutation_p.N189H	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	481					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCAGGTTAGAAATCTGTGCTA	0.507													14	65					0	0	1	0	0	
SAR1B	51128	broad.mit.edu	37	5	133944178	133944178	+	Nonsense_Mutation	SNP	C	A	A	rs137853125		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:133944178C>A	uc003kzq.2	-	7	611	c.364G>T	c.(364-366)GAA>TAA	p.E122*	SAR1B_uc003kzr.2_Nonsense_Mutation_p.E122*	NM_001033503	NP_001028675	Q9Y6B6	SAR1B_HUMAN	SAR1a gene homolog 2	122					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	cytosol|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi cisterna membrane	GTP binding|GTPase activity|metal ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCAATGGTTTCATCTGTCATT	0.353													10	32					0.010729	0.0108148	1	1	0	
CAMLG	819	broad.mit.edu	37	5	134086512	134086512	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:134086512G>A	uc003kzt.2	+	4	868	c.763G>A	c.(763-765)GAA>AAA	p.E255K	CAMLG_uc003kzu.2_3'UTR	NM_001745	NP_001736	P49069	CAMLG_HUMAN	calcium modulating ligand	255	Helical; (Potential).				defense response	endoplasmic reticulum|integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Cyclosporine(DB00091)	AATTCCTGCCGAAGTGATAAA	0.368													20	50					0	0	1	0	0	
C5orf24	134553	broad.mit.edu	37	5	134190891	134190891	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:134190891G>A	uc003kzx.2	+	2	362	c.301G>A	c.(301-303)GGA>AGA	p.G101R	C5orf24_uc003kzy.3_Missense_Mutation_p.G101R|C5orf24_uc003kzz.2_Missense_Mutation_p.G101R	NM_152409	NP_689622	Q7Z6I8	CE024_HUMAN	hypothetical protein LOC134553	101											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CAAATCAGCAGGATACCGGAC	0.498													42	92					0	0	1	0	0	
TGFBI	7045	broad.mit.edu	37	5	135382148	135382148	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:135382148C>T	uc003lbf.3	+	4	584	c.423C>T	c.(421-423)TTC>TTT	p.F141F	TGFBI_uc003lbg.3_5'UTR|TGFBI_uc003lbh.3_5'UTR|TGFBI_uc011cyb.1_5'UTR|TGFBI_uc010jed.2_5'Flank	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	141	FAS1 1.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCACCATCTTCGCCCCTAGCA	0.637													8	26					0	0	1	0	0	
TRPC7	57113	broad.mit.edu	37	5	135567128	135567128	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:135567128G>T	uc003lbn.1	-	7	1954	c.1951C>A	c.(1951-1953)CTC>ATC	p.L651I	TRPC7_uc010jef.1_Missense_Mutation_p.L588I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.L582I|TRPC7_uc010jei.1_Missense_Mutation_p.L527I|TRPC7_uc010jej.1_Missense_Mutation_p.L203I	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	652	Helical; (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ACGCCGTAGAGAACGTAGCCA	0.408													8	16					0.00307968	0.0031162	1	1	0	
TRPC7	57113	broad.mit.edu	37	5	135693035	135693035	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:135693035T>C	uc003lbn.1	-	1	41	c.38A>G	c.(37-39)CAC>CGC	p.H13R	TRPC7_uc010jef.1_Missense_Mutation_p.H5R|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.H5R|TRPC7_uc010jei.1_Missense_Mutation_p.H5R|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	14	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CAGCGTTGTGTGCCGGCGCTG	0.592													24	48					0	0	1	0	0	
MYOT	9499	broad.mit.edu	37	5	137206353	137206353	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137206353G>A	uc011cye.1	+	2	30	c.13G>A	c.(13-15)GAA>AAA	p.E5K	MYOT_uc003lbv.2_Missense_Mutation_p.E5K|MYOT_uc011cyg.1_Intron|MYOT_uc011cyh.1_Intron	NM_001135940	NP_001129412	Q9UBF9	MYOTI_HUMAN	myotilin isoform b	5					muscle contraction	actin cytoskeleton|sarcolemma|sarcomere	actin binding|structural constituent of muscle			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GTTTAACTACGAACGTCCAAA	0.468													80	145					0	0	1	0	0	
MYOT	9499	broad.mit.edu	37	5	137217750	137217750	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137217750A>C	uc011cye.1	+	6	789	c.772A>C	c.(772-774)AAC>CAC	p.N258H	MYOT_uc003lbv.2_Missense_Mutation_p.N258H|MYOT_uc011cyg.1_Missense_Mutation_p.N74H|MYOT_uc011cyh.1_Missense_Mutation_p.N143H	NM_001135940	NP_001129412	Q9UBF9	MYOTI_HUMAN	myotilin isoform b	258	Necessary for interaction with ACTA1.|Ig-like C2-type 1.|Necessary for interaction with FLNC.				muscle contraction	actin cytoskeleton|sarcolemma|sarcomere	actin binding|structural constituent of muscle			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			AGTGCCAGAGAACATGTCGAT	0.393													36	77					0	0	1	0	0	
PKD2L2	27039	broad.mit.edu	37	5	137241990	137241990	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137241990T>C	uc003lby.2	+	6	898	c.842T>C	c.(841-843)TTT>TCT	p.F281S	PKD2L2_uc010jep.1_Missense_Mutation_p.F221S|PKD2L2_uc003lbw.1_Missense_Mutation_p.F281S|PKD2L2_uc003lbx.2_Missense_Mutation_p.F281S|PKD2L2_uc011cyi.1_5'UTR	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	281	Helical; (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TATGACTATTTTATTGCTTCC	0.343													45	68					0	0	1	0	0	
PKD2L2	27039	broad.mit.edu	37	5	137242046	137242046	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137242046G>A	uc003lby.2	+	6	954	c.898G>A	c.(898-900)GAA>AAA	p.E300K	PKD2L2_uc010jep.1_Missense_Mutation_p.E240K|PKD2L2_uc003lbw.1_Missense_Mutation_p.E300K|PKD2L2_uc003lbx.2_Missense_Mutation_p.E300K|PKD2L2_uc011cyi.1_5'UTR	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	300	Cytoplasmic (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			CACAACACAAGAAGTCAAAAA	0.318													24	60					0	0	1	0	0	
FAM13B	51306	broad.mit.edu	37	5	137284799	137284799	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137284799A>C	uc003lbz.2	-	17	2473	c.1939T>G	c.(1939-1941)TTT>GTT	p.F647V	FAM13B_uc003lcb.2_Missense_Mutation_p.F551V|FAM13B_uc003lca.2_Missense_Mutation_p.F647V	NM_016603	NP_057687	Q9NYF5	FA13B_HUMAN	hypothetical protein LOC51306 isoform 1	647					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GAAGAGCCAAAGCTTTTTGGA	0.388													39	80					0	0	1	0	0	
KIF20A	10112	broad.mit.edu	37	5	137518869	137518869	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137518869C>T	uc003lcj.2	+	8	1340	c.844C>T	c.(844-846)CGA>TGA	p.R282*	KIF20A_uc011cyo.1_Nonsense_Mutation_p.R264*	NM_005733	NP_005724	O95235	KI20A_HUMAN	kinesin family member 20A	282	Kinesin-motor.				cytokinesis|M phase of mitotic cell cycle|microtubule-based movement|protein transport|vesicle-mediated transport	Golgi apparatus|microtubule|nucleoplasm	ATP binding|microtubule motor activity|protein binding|transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			AACAAGTCATCGATGGGCACA	0.498													32	66					0	0	1	0	0	
GFRA3	2676	broad.mit.edu	37	5	137589038	137589038	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137589038A>C	uc003lcn.2	-	7	1191	c.1051T>G	c.(1051-1053)TTT>GTT	p.F351V	GFRA3_uc003lco.2_Missense_Mutation_p.F320V	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	351					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TGGCTGTGAAAACGCATCTTA	0.552													3	13					0	0	1	0	0	
CDC25C	995	broad.mit.edu	37	5	137627783	137627783	+	Missense_Mutation	SNP	C	T	T	rs148887677		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137627783C>T	uc003lcp.1	-	8	909	c.638G>A	c.(637-639)CGC>CAC	p.R213H	CDC25C_uc003lcq.1_Missense_Mutation_p.R140H|CDC25C_uc003lcr.1_Missense_Mutation_p.R213H|CDC25C_uc011cyp.1_Missense_Mutation_p.R230H|CDC25C_uc003lcs.1_Missense_Mutation_p.R291H	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	213					cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CGACGGGGAGCGATATAGGCC	0.313													45	92					0	0	1	0	0	
KDM3B	51780	broad.mit.edu	37	5	137715275	137715275	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137715275C>T	uc003lcy.1	+	5	783	c.583C>T	c.(583-585)CCC>TCC	p.P195S	KDM3B_uc010jew.1_5'UTR	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	195					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						CCTTTTAGGTCCCTACAGTGT	0.403													27	48					0	0	1	0	0	
KDM3B	51780	broad.mit.edu	37	5	137771343	137771343	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137771343C>T	uc003lcy.1	+	24	5440	c.5240C>T	c.(5239-5241)GCG>GTG	p.A1747V	KDM3B_uc010jew.1_Missense_Mutation_p.A1403V|KDM3B_uc011cys.1_Missense_Mutation_p.A779V	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	1747					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						GTGAAAGATGCGGTTGGCACC	0.478													6	19					0	0	1	0	0	
ETF1	2107	broad.mit.edu	37	5	137844015	137844015	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137844015A>C	uc003ldc.3	-	11	1458	c.1293T>G	c.(1291-1293)TTT>TTG	p.F431L	ETF1_uc011cyv.1_Missense_Mutation_p.F417L|ETF1_uc010jex.2_RNA|ETF1_uc003ldd.3_Missense_Mutation_p.F398L	NM_004730	NP_004721	P62495	ERF1_HUMAN	eukaryotic translation termination factor 1	431					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|protein methylation|regulation of translational termination	cytoplasm	protein binding|ribosome binding|translation release factor activity, codon specific			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			CAAGGTCAAAAAATTCATCGT	0.473													9	27					0	0	1	0	0	
HSPA9	3313	broad.mit.edu	37	5	137892159	137892159	+	Silent	SNP	G	A	A	rs148730345		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:137892159G>A	uc003ldf.2	-	16	2052	c.1944C>T	c.(1942-1944)TTC>TTT	p.F648F	HSPA9_uc003lde.2_Silent_p.F65F	NM_004134	NP_004125	P38646	GRP75_HUMAN	heat shock 70kDa protein 9 precursor	648					anti-apoptosis|protein folding	cell surface|mitochondrial nucleoid	ATP binding|unfolded protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			ATGCCATTTCGAACAGCTTCA	0.453													77	163					0	0	1	0	0	
CTNNA1	1495	broad.mit.edu	37	5	138160307	138160307	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:138160307A>G	uc003ldh.2	+	6	772	c.677A>G	c.(676-678)CAG>CGG	p.Q226R	CTNNA1_uc011cyx.1_Missense_Mutation_p.Q123R|CTNNA1_uc011cyy.1_Missense_Mutation_p.Q103R|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Missense_Mutation_p.Q226R	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	226	Involved in homodimerization.				adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			ACTGCATCCCAGGCATGCCTA	0.517													20	48					0	0	1	0	0	
CTNNA1	1495	broad.mit.edu	37	5	138160426	138160426	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:138160426G>A	uc003ldh.2	+	6	891	c.796G>A	c.(796-798)GAT>AAT	p.D266N	CTNNA1_uc011cyx.1_Missense_Mutation_p.D163N|CTNNA1_uc011cyy.1_Missense_Mutation_p.D143N|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Missense_Mutation_p.D266N	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	266					adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TGCCTCAGACGATGCCTCACA	0.532													52	99					0	0	1	0	0	
LRRTM2	26045	broad.mit.edu	37	5	138208713	138208713	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:138208713C>A	uc011cyz.1	-	2	1994	c.1537G>T	c.(1537-1539)GAA>TAA	p.E513*	CTNNA1_uc003ldh.2_Intron|CTNNA1_uc011cyx.1_Intron|CTNNA1_uc011cyy.1_Intron|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Intron|LRRTM2_uc010jez.2_RNA|LRRTM2_uc011cza.1_Nonsense_Mutation_p.E379*|CTNNA1_uc003ldl.2_5'Flank	NM_015564	NP_056379	O43300	LRRT2_HUMAN	leucine rich repeat transmembrane neuronal 2	513	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			ACTTCACATTCTTTGTATGGC	0.363													59	110					1.27862e-28	1.55661e-28	1	1	0	
SIL1	64374	broad.mit.edu	37	5	138386648	138386648	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:138386648C>T	uc003ldm.2	-	3	349	c.332G>A	c.(331-333)CGA>CAA	p.R111Q	SIL1_uc003ldn.2_Missense_Mutation_p.R110Q|SIL1_uc003ldo.2_Missense_Mutation_p.R111Q|SIL1_uc003ldp.2_Missense_Mutation_p.R111Q	NM_022464	NP_071909	Q9H173	SIL1_HUMAN	SIL1 protein precursor	111	Interaction with HSPA5 and localization to the endoplasmic reticulum (By similarity).				intracellular protein transport|protein folding|transmembrane transport	endoplasmic reticulum lumen	unfolded protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			CAAATTATTTCGGAACTTGTC	0.438									Marinesco-Sj_gren_syndrome				40	90					0	0	1	0	0	
SLC23A1	9963	broad.mit.edu	37	5	138715727	138715727	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:138715727C>T	uc003leh.2	-	7	783	c.686G>A	c.(685-687)CGC>CAC	p.R229H	SLC23A1_uc003leg.2_Missense_Mutation_p.R233H	NM_005847	NP_005838	Q9UHI7	S23A1_HUMAN	solute carrier family 23 (nucleobase	229					brain development|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|response to toxin|transepithelial L-ascorbic acid transport|water-soluble vitamin metabolic process	apical plasma membrane|cytoplasm|integral to plasma membrane|intracellular organelle|membrane fraction	dehydroascorbic acid transporter activity|L-ascorbate:sodium symporter activity|nucleobase transmembrane transporter activity|protein binding|sodium-dependent L-ascorbate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)		Vitamin C(DB00126)	GGTGAGGTTGCGCAGGTACTG	0.602													6	22					0	0	1	0	0	
PSD2	84249	broad.mit.edu	37	5	139216473	139216473	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:139216473G>A	uc003leu.1	+	10	1686	c.1481G>A	c.(1480-1482)CGA>CAA	p.R494Q		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	494					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGGTGACGCGAATCCTGGAT	0.582													39	98					0	0	1	0	0	
PSD2	84249	broad.mit.edu	37	5	139217339	139217339	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:139217339G>A	uc003leu.1	+	12	2000	c.1795G>A	c.(1795-1797)GAC>AAC	p.D599N		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	599	PH.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAAGACAGCCGACTGGAGGGT	0.612													14	38					0	0	1	0	0	
NRG2	9542	broad.mit.edu	37	5	139231256	139231256	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:139231256G>A	uc003lex.1	-	9	1930	c.1705C>T	c.(1705-1707)CGC>TGC	p.R569C	NRG2_uc003lev.1_Missense_Mutation_p.R577C|NRG2_uc003lew.1_Missense_Mutation_p.R571C|NRG2_uc003ley.1_Missense_Mutation_p.R563C	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	569	Cytoplasmic (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGCCCTGCGCCGCTCCTCC	0.632													22	55					0	0	1	0	0	
NRG2	9542	broad.mit.edu	37	5	139231356	139231356	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:139231356C>A	uc003lex.1	-	9	1830	c.1605G>T	c.(1603-1605)TCG>TCT	p.S535S	NRG2_uc003lev.1_Silent_p.S543S|NRG2_uc003lew.1_Silent_p.S537S|NRG2_uc003ley.1_Silent_p.S529S	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	535	Cytoplasmic (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCATGATCCCCGACTGGGAGT	0.617													15	38					2.31682e-05	2.38585e-05	1	1	0	
TMCO6	55374	broad.mit.edu	37	5	140022539	140022539	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140022539A>G	uc003lgl.2	+	7	820	c.719A>G	c.(718-720)CAC>CGC	p.H240R	TMCO6_uc003lgm.2_Missense_Mutation_p.H246R|TMCO6_uc010jft.2_5'UTR|TMCO6_uc003lgn.2_Missense_Mutation_p.H131R|TMCO6_uc003lgo.2_5'UTR	NM_018502	NP_060972	Q96DC7	TMCO6_HUMAN	transmembrane and coiled-coil domains 6	240					protein import into nucleus	cytoplasm|nuclear pore	binding|protein transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCCTCAGCACATGCTACAA	0.532													19	56					0	0	1	0	0	
TMCO6	55374	broad.mit.edu	37	5	140023501	140023501	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140023501A>G	uc003lgl.2	+	9	1156	c.1055A>G	c.(1054-1056)AAA>AGA	p.K352R	TMCO6_uc003lgm.2_Missense_Mutation_p.K358R|TMCO6_uc010jft.2_Missense_Mutation_p.K112R|TMCO6_uc003lgn.2_Missense_Mutation_p.K243R|TMCO6_uc003lgo.2_Missense_Mutation_p.K112R	NM_018502	NP_060972	Q96DC7	TMCO6_HUMAN	transmembrane and coiled-coil domains 6	352	Helical; (Potential).				protein import into nucleus	cytoplasm|nuclear pore	binding|protein transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTTTCCAGAAACAGCCCAGT	0.517													20	70					0	0	1	0	0	
WDR55	54853	broad.mit.edu	37	5	140047890	140047890	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140047890G>A	uc003lgr.3	+	2	377	c.263G>A	c.(262-264)CGA>CAA	p.R88Q	WDR55_uc011czl.1_5'Flank	NM_017706	NP_060176	Q9H6Y2	WDR55_HUMAN	WD repeat domain 55	88	WD 2.				rRNA processing	cytoplasm|nucleolus				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGGCCTGCCGAGCTGTGGCC	0.562													42	80					0	0	1	0	0	
HARS2	23438	broad.mit.edu	37	5	140077629	140077629	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140077629T>C	uc003lgx.2	+	12	1643	c.1427T>C	c.(1426-1428)GTC>GCC	p.V476A	HARS2_uc011czr.1_Missense_Mutation_p.V451A|HARS2_uc011czs.1_Missense_Mutation_p.V332A|HARS2_uc011czt.1_Missense_Mutation_p.V304A|HARS2_uc011czu.1_Missense_Mutation_p.V302A|ZMAT2_uc003lgy.1_5'Flank	NM_012208	NP_036340	P49590	SYHM_HUMAN	histidyl-tRNA synthetase 2 precursor	476					histidyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|histidine-tRNA ligase activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAGAAGGGGTCATCAAGATC	0.473													31	49					0	0	1	0	0	
PCDHA1	56147	broad.mit.edu	37	5	140166397	140166397	+	Silent	SNP	G	A	A	rs150817350		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140166397G>A	uc003lhb.2	+	1	522	c.522G>A	c.(520-522)CCG>CCA	p.P174P	PCDHA1_uc003lha.2_Silent_p.P174P|PCDHA1_uc003lgz.2_Silent_p.P174P	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	174	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCTCAGCCCGAGTGATTATT	0.418													12	95					0	0	1	0	0	
PCDHA2	56146	broad.mit.edu	37	5	140174848	140174848	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140174848C>T	uc003lhd.2	+	1	405	c.299C>T	c.(298-300)GCG>GTG	p.A100V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.A100V|PCDHA2_uc011czy.1_Missense_Mutation_p.A100V	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	100	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCGGAGCGCGGAATGTAGC	0.542													92	193					0	0	1	0	0	
PCDHA4	56144	broad.mit.edu	37	5	140187116	140187116	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140187116A>C	uc003lhi.2	+	1	445	c.344A>C	c.(343-345)CAG>CCG	p.Q115P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.Q115P|PCDHA4_uc011daa.1_Missense_Mutation_p.Q115P	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	115	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGCCGCTGCAGGTTTTCCAT	0.582													88	115					0	0	1	0	0	
PCDHA4	56144	broad.mit.edu	37	5	140187186	140187186	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140187186G>T	uc003lhi.2	+	1	515	c.414G>T	c.(412-414)AAG>AAT	p.K138N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.K138N|PCDHA4_uc011daa.1_Missense_Mutation_p.K138N	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	138	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAACACAAAAGAACCTGTCCA	0.572													47	113					1.06522e-23	1.27633e-23	1	1	0	
PCDHA6	56142	broad.mit.edu	37	5	140208802	140208802	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140208802G>A	uc003lho.2	+	1	1153	c.1126G>A	c.(1126-1128)GAC>AAC	p.D376N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.D376N|PCDHA6_uc011dab.1_Missense_Mutation_p.D376N	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	376	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGCGTGAACGACCTCGATTC	0.498													59	166					0	0	1	0	0	
PCDHA7	56141	broad.mit.edu	37	5	140214350	140214350	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140214350G>A	uc003lhq.2	+	1	382	c.382G>A	c.(382-384)GAC>AAC	p.D128N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.D128N	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	128	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACATTAACGACAACCCTCC	0.597													81	122					0	0	1	0	0	
PCDHA8	56140	broad.mit.edu	37	5	140221499	140221499	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140221499A>C	uc003lhs.2	+	1	593	c.593A>C	c.(592-594)AAA>ACA	p.K198T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.K198T	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	198	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTATTAAGAAAATCCTTGGAC	0.473													9	98					0	0	1	0	0	
PCDHA9	9752	broad.mit.edu	37	5	140228097	140228097	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140228097G>A	uc003lhu.2	+	1	741	c.17G>A	c.(16-18)CGA>CAA	p.R6Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.R6Q	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	6					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACTCAAGTCGAGGAGATCCA	0.488													73	109					0	0	1	0	0	
PCDHA11	56138	broad.mit.edu	37	5	140249484	140249484	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140249484G>A	uc003lia.2	+	1	1654	c.796G>A	c.(796-798)GCC>ACC	p.A266T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.A266T	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	266	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAAACTAAACGCCACAGACCG	0.388													7	14					0	0	1	0	0	
PCDHA12	56137	broad.mit.edu	37	5	140255526	140255526	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140255526G>A	uc003lic.2	+	1	596	c.469G>A	c.(469-471)GCT>ACT	p.A157T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.A157T	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	157	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTAGAGGGCGCTTCTGATGC	0.408													52	70					0	0	1	0	0	
PCDHAC1	56135	broad.mit.edu	37	5	140307492	140307492	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140307492G>A	uc003lih.2	+	1	1191	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.E339K	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	339	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCATGCCCCCGAACTGGACTT	0.522													72	128					0	0	1	0	0	
PCDHAC1	56135	broad.mit.edu	37	5	140307515	140307515	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140307515G>A	uc003lih.2	+	1	1214	c.1038G>A	c.(1036-1038)TCG>TCA	p.S346S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.S346S	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	346	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACTCTTTCGAACCCAGTAC	0.517													46	121					0	0	1	0	0	
PCDHAC1	56135	broad.mit.edu	37	5	140308872	140308872	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140308872C>T	uc003lih.2	+	1	2571	c.2395C>T	c.(2395-2397)CGG>TGG	p.R799W	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.R799W	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	799	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATTCAGATTCGGAATAGGAA	0.453													55	113					0	0	1	0	0	
PCDHB1	29930	broad.mit.edu	37	5	140431993	140431993	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140431993A>C	uc003lik.1	+	1	1015	c.938A>C	c.(937-939)GAA>GCA	p.E313A		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	313	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAAGCCATTGAAACATACGAC	0.458													52	77					0	0	1	0	0	
PCDHB1	29930	broad.mit.edu	37	5	140432001	140432001	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140432001G>A	uc003lik.1	+	1	1023	c.946G>A	c.(946-948)GAC>AAC	p.D316N		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	316	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGAAACATACGACATTGACAT	0.463													57	83					0	0	1	0	0	
PCDHB1	29930	broad.mit.edu	37	5	140432773	140432773	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140432773G>A	uc003lik.1	+	1	1795	c.1718G>A	c.(1717-1719)TGC>TAC	p.C573Y		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	573	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCTTGCCCTGCAATGACCTG	0.502													22	65					0	0	1	0	0	
PCDHB1	29930	broad.mit.edu	37	5	140432871	140432871	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140432871C>A	uc003lik.1	+	1	1893	c.1816C>A	c.(1816-1818)CAT>AAT	p.H606N		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	606	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTTTCATATCATCTACTTAA	0.468													28	51					1.17739e-12	1.30765e-12	1	1	0	
PCDHB1	29930	broad.mit.edu	37	5	140432958	140432958	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140432958G>T	uc003lik.1	+	1	1980	c.1903G>T	c.(1903-1905)GAC>TAC	p.D635Y		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	635	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATCTGAGAGAGACCCCATGAT	0.423													51	108					3.68337e-26	4.45113e-26	1	1	0	
PCDHB3	56132	broad.mit.edu	37	5	140481185	140481185	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140481185G>A	uc003lio.2	+	1	952	c.952G>A	c.(952-954)GAC>AAC	p.D318N	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	318	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTATGAAGTCGACATCGAGGC	0.428													37	57					0	0	1	0	0	
PCDHB3	56132	broad.mit.edu	37	5	140482283	140482283	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140482283G>A	uc003lio.2	+	1	2050	c.2050G>A	c.(2050-2052)GAC>AAC	p.D684N	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	684	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCCCAGGCCGACTTGCTCAC	0.682													79	171					0	0	1	0	0	
PCDHB4	56131	broad.mit.edu	37	5	140502262	140502262	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140502262C>T	uc003lip.1	+	1	682	c.682C>T	c.(682-684)CGA>TGA	p.R228*		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	228	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTCATGGTTCGAATCCTGAT	0.542													63	92					0	0	1	0	0	
PCDHB5	26167	broad.mit.edu	37	5	140515899	140515899	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140515899G>A	uc003liq.2	+	1	1100	c.883G>A	c.(883-885)GAG>AAG	p.E295K		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	295	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGTAATAGACGAGAAAACAGC	0.458													64	135					0	0	1	0	0	
PCDHB6	56130	broad.mit.edu	37	5	140529924	140529924	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140529924C>T	uc003lir.2	+	1	86	c.86C>T	c.(85-87)TCG>TTG	p.S29L	PCDHB6_uc011dah.1_Intron	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	29	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTTCTGAATCGATTCAGTAT	0.478													36	95					0	0	1	0	0	
PCDHB6	56130	broad.mit.edu	37	5	140530736	140530736	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140530736C>T	uc003lir.2	+	1	898	c.898C>T	c.(898-900)CGG>TGG	p.R300W	PCDHB6_uc011dah.1_Missense_Mutation_p.R164W	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	300	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGAGAAATTCGGCTGAGAAA	0.443													43	89					0	0	1	0	0	
PCDHB7	56129	broad.mit.edu	37	5	140552652	140552652	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140552652C>T	uc003lit.2	+	1	410	c.236C>T	c.(235-237)TCG>TTG	p.S79L		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	79	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGCTCAGTTCGCTTACTGGT	0.473													33	65					0	0	1	0	0	
PCDHB7	56129	broad.mit.edu	37	5	140553101	140553101	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140553101C>T	uc003lit.2	+	1	859	c.685C>T	c.(685-687)CGC>TGC	p.R229C		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	229	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCCCTCGTGCGCATTCTGGT	0.542													32	70					0	0	1	0	0	
PCDHB7	56129	broad.mit.edu	37	5	140553637	140553637	+	Missense_Mutation	SNP	A	C	C	rs142786900	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140553637A>C	uc003lit.2	+	1	1395	c.1221A>C	c.(1219-1221)AAA>AAC	p.K407N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	407	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAACAGAGAAACCTTTGGATC	0.502													40	61					0	0	1	0	0	
PCDHB8	56128	broad.mit.edu	37	5	140558153	140558153	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140558153C>T	uc011dai.1	+	1	724	c.538C>T	c.(538-540)CGG>TGG	p.R180W	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	180	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCCTATTTTCGGGTCCTCAC	0.493													35	108					0	0	1	0	0	
PCDHB8	56128	broad.mit.edu	37	5	140559338	140559338	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140559338G>A	uc011dai.1	+	1	1909	c.1723G>A	c.(1723-1725)GAG>AAG	p.E575K	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	575	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCTGCACCGAGCTGGTGCC	0.697													21	85					0	0	1	0	0	
PCDHB8	56128	broad.mit.edu	37	5	140559922	140559922	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140559922A>G	uc011dai.1	+	1	2493	c.2307A>G	c.(2305-2307)AAA>AAG	p.K769K	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	769	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTTCCTGAAACCAGTATTAC	0.478													34	92					0	0	1	0	0	
PCDHB10	56126	broad.mit.edu	37	5	140573028	140573028	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140573028C>A	uc003lix.2	+	1	1077	c.903C>A	c.(901-903)ATC>ATA	p.I301I		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	301	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGGGGAAATCTTTCTCAGAG	0.368													39	72					1.96642e-18	2.29832e-18	1	1	0	
PCDHB11	56125	broad.mit.edu	37	5	140579519	140579519	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140579519G>T	uc003liy.2	+	1	172	c.172G>T	c.(172-174)GAA>TAA	p.E58*	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	58	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAAGGTGAGAGAACTGTCCTC	0.512													37	66					2.42023e-17	2.79957e-17	1	1	0	
PCDHB11	56125	broad.mit.edu	37	5	140581471	140581471	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140581471C>T	uc003liy.2	+	1	2124	c.2124C>T	c.(2122-2124)TTC>TTT	p.F708F	PCDHB11_uc011daj.1_Silent_p.F343F	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	708	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCTCCTGTTCGTGGCGGTGC	0.682													67	183					0	0	1	0	0	
PCDHB13	56123	broad.mit.edu	37	5	140594772	140594772	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140594772G>A	uc003lja.1	+	1	1264	c.1077G>A	c.(1075-1077)GAG>GAA	p.E359E		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	359	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAATACCTGAGAACGCGCCTG	0.448													101	187					0	0	1	0	0	
PCDHB14	56122	broad.mit.edu	37	5	140605445	140605445	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140605445C>T	uc003ljb.2	+	1	2368	c.2368C>T	c.(2368-2370)CGA>TGA	p.R790*	PCDHB14_uc011dal.1_Nonsense_Mutation_p.R637*	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	790	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGAGAACTTTCGAAATAGCTT	0.343													34	67					0	0	1	0	0	
PCDHB18	54660	broad.mit.edu	37	5	140615714	140615714	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140615714C>T	uc003ljc.1	+	1	1777	c.1429C>T	c.(1429-1431)CGC>TGC	p.R477C		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GTTCGGGTTTCGCGTGGGCGC	0.667													77	133					0	0	1	0	0	
PCDHB15	56121	broad.mit.edu	37	5	140625165	140625165	+	Missense_Mutation	SNP	C	T	T	rs147410183		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140625165C>T	uc003lje.2	+	1	19	c.19C>T	c.(19-21)CGC>TGC	p.R7C		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	7					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGGGGAGCGCTTTCCCGA	0.537													20	45					0	0	1	0	0	
PCDHB15	56121	broad.mit.edu	37	5	140625274	140625274	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140625274C>A	uc003lje.2	+	1	128	c.128C>A	c.(127-129)TCT>TAT	p.S43Y		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	43	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGAGAGGTTCTTTTGTAGCC	0.547													26	71					5.61819e-17	6.48411e-17	1	1	0	
PCDHB15	56121	broad.mit.edu	37	5	140625481	140625481	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140625481A>C	uc003lje.2	+	1	335	c.335A>C	c.(334-336)AAA>ACA	p.K112T		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	112	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTACTGAAAAAACCTTTGGAA	0.438													53	88					0	0	1	0	0	
PCDHB15	56121	broad.mit.edu	37	5	140627444	140627444	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140627444C>A	uc003lje.2	+	1	2298	c.2298C>A	c.(2296-2298)TTC>TTA	p.F766L		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	766	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTTCAAGTTCTTGAAGCCTA	0.473													70	92					2.165e-29	2.63963e-29	1	1	0	
SLC25A2	83884	broad.mit.edu	37	5	140682859	140682859	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140682859C>A	uc003ljf.2	-	1	754	c.574G>T	c.(574-576)GAA>TAA	p.E192*		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	192	Solcar 2.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	CGGCTCAGTTCATAGCCACCA	0.463													40	84					1.07121e-22	1.27939e-22	1	1	0	
PCDHGA1	56114	broad.mit.edu	37	5	140710513	140710513	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140710513C>T	uc003lji.1	+	1	262	c.262C>T	c.(262-264)CGC>TGC	p.R88C	PCDHGA1_uc011dan.1_Missense_Mutation_p.R88C	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	88	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATCACCGCGCGCAGGATAGA	0.537													83	170					0	0	1	0	0	
PCDHGA1	56114	broad.mit.edu	37	5	140711198	140711198	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140711198C>A	uc003lji.1	+	1	947	c.947C>A	c.(946-948)TCA>TAA	p.S316*	PCDHGA1_uc011dan.1_Nonsense_Mutation_p.S316*	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	316	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAATGTATTCAATGGAAGTT	0.388													36	66					1.36161e-19	1.60149e-19	1	1	0	
PCDHGB1	56104	broad.mit.edu	37	5	140730274	140730274	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140730274C>A	uc003ljo.1	+	1	447	c.447C>A	c.(445-447)TTC>TTA	p.F149L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.F149L	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	149	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGTAAAATTCTCTCTGGATT	0.413													71	136					1.08321e-29	1.32225e-29	1	1	0	
PCDHGB1	56104	broad.mit.edu	37	5	140730670	140730670	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140730670C>A	uc003ljo.1	+	1	843	c.843C>A	c.(841-843)TCC>TCA	p.S281S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Silent_p.S281S	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	281	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTCAATTCCCCAATAAGTA	0.478													33	106					4.65686e-17	5.37613e-17	1	1	0	
PCDHGB1	56104	broad.mit.edu	37	5	140731944	140731944	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140731944C>T	uc003ljo.1	+	1	2117	c.2117C>T	c.(2116-2118)GCG>GTG	p.A706V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Missense_Mutation_p.A706V|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	706	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGATTCTAGCGATCGCCCTG	0.617													83	148					0	0	1	0	0	
PCDHGA4	56111	broad.mit.edu	37	5	140734861	140734861	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140734861C>A	uc003ljq.1	+	1	94	c.94C>A	c.(94-96)CTC>ATC	p.L32I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.L32I	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	32	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGAACAGATTCTCTACTCGGT	0.642													30	69					1.2476e-16	1.43726e-16	1	1	0	
PCDHGB2	56103	broad.mit.edu	37	5	140740020	140740020	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140740020C>T	uc003ljs.1	+	1	318	c.318C>T	c.(316-318)TTC>TTT	p.F106F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Silent_p.F106F	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	106	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTGGATTTCGATACTGTCG	0.383													47	106					0	0	1	0	0	
PCDHGB3	56102	broad.mit.edu	37	5	140750426	140750426	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140750426A>G	uc003ljw.1	+	1	465	c.465A>G	c.(463-465)GAA>GAG	p.E155E	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Silent_p.E155E	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	155	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGCCCTGGAATCTGCGCAAG	0.498													79	174					0	0	1	0	0	
PCDHGB3	56102	broad.mit.edu	37	5	140751953	140751953	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140751953C>T	uc003ljw.1	+	1	1992	c.1992C>T	c.(1990-1992)TTC>TTT	p.F664F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Silent_p.F664F|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	664	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTAATCTTCGCAGATAGCT	0.607													36	74					0	0	1	0	0	
PCDHGB3	56102	broad.mit.edu	37	5	140752194	140752194	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140752194G>A	uc003ljw.1	+	1	2233	c.2233G>A	c.(2233-2235)GAA>AAA	p.E745K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.E745K|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	745	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCTACAGCGAAAGGACTTT	0.512													37	54					0	0	1	0	0	
PCDHGA7	56108	broad.mit.edu	37	5	140764273	140764273	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140764273T>G	uc003lka.1	+	1	1807	c.1807T>G	c.(1807-1809)TGG>GGG	p.W603G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.W603G	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	603	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGAACGCCTGGCTGTCATA	0.637													32	106					0	0	1	0	0	
PCDHGA7	56108	broad.mit.edu	37	5	140764319	140764319	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140764319C>T	uc003lka.1	+	1	1853	c.1853C>T	c.(1852-1854)GCG>GTG	p.A618V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.A618V	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	618	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACTCTTTGCGGTTGGGCTG	0.642													18	78					0	0	1	0	0	
PCDHGB4	8641	broad.mit.edu	37	5	140769585	140769585	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140769585C>T	uc003lkc.1	+	1	2134	c.2134C>T	c.(2134-2136)CGC>TGC	p.R712C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.R712C	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	712	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATTGCCTTGCGCCTGCGACG	0.607													86	172					0	0	1	0	0	
PCDHGB4	8641	broad.mit.edu	37	5	140769650	140769650	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140769650C>T	uc003lkc.1	+	1	2199	c.2199C>T	c.(2197-2199)TCC>TCT	p.S733S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.S733S	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	733	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGTTAAATCCGAATCCGTGG	0.527													104	196					0	0	1	0	0	
PCDHGA8	9708	broad.mit.edu	37	5	140772850	140772850	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140772850C>T	uc003lkd.1	+	1	1368	c.470C>T	c.(469-471)GCT>GTT	p.A157V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.A157V	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	157	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCCAGAAGCTGTTGACCCG	0.488													32	80					0	0	1	0	0	
PCDHGA8	9708	broad.mit.edu	37	5	140773459	140773459	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140773459C>A	uc003lkd.1	+	1	1977	c.1079C>A	c.(1078-1080)TCT>TAT	p.S360Y	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.S360Y	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	360	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTAGAAAATTCTCTTCCCGGG	0.408													36	62					2.47316e-13	2.76362e-13	1	1	0	
PCDHGB5	56101	broad.mit.edu	37	5	140779267	140779267	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140779267G>A	uc003lkf.1	+	1	1573	c.1573G>A	c.(1573-1575)GAA>AAA	p.E525K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.E525K	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	525	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCACCTTCGAACTCACACT	0.652													13	30					0	0	1	0	0	
PCDHGB5	56101	broad.mit.edu	37	5	140779568	140779568	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140779568C>T	uc003lkf.1	+	1	1874	c.1874C>T	c.(1873-1875)GCG>GTG	p.A625V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.A625V|PCDHGA9_uc011dax.1_5'Flank|PCDHGA9_uc003lkh.1_5'Flank	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	625	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGCGCACAGCGCGTGCCTTG	0.697													21	48					0	0	1	0	0	
PCDHGB6	56100	broad.mit.edu	37	5	140788389	140788389	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140788389C>A	uc003lkj.1	+	1	620	c.620C>A	c.(619-621)TCT>TAT	p.S207Y	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.S207Y	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	207	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAACAGAGATCTCATAGCTTG	0.448													9	19					2.74318e-10	2.97486e-10	1	1	0	
PCDHGB6	56100	broad.mit.edu	37	5	140788952	140788952	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140788952T>C	uc003lkj.1	+	1	1183	c.1183T>C	c.(1183-1185)TAT>CAT	p.Y395H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.Y395H	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	395	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCAAGATTTATTCTTCTTC	0.453													23	50					0	0	1	0	0	
PCDHGB6	56100	broad.mit.edu	37	5	140789915	140789915	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140789915C>T	uc003lkj.1	+	1	2146	c.2146C>T	c.(2146-2148)CGA>TGA	p.R716*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Nonsense_Mutation_p.R716*|PCDHGA10_uc011day.1_5'Flank|PCDHGA10_uc003lkl.1_5'Flank	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	716	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTGCGCCTGCGACGCTCTCT	0.577													50	100					0	0	1	0	0	
PCDHGA10	56106	broad.mit.edu	37	5	140793736	140793736	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140793736C>A	uc003lkl.1	+	1	994	c.994C>A	c.(994-996)CTT>ATT	p.L332I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.L332I	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	332	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGAGCATATCTTGCAACTGC	0.353													4	16					0.00024832	0.000253393	1	1	0	
PCDHGA10	56106	broad.mit.edu	37	5	140794687	140794687	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140794687G>T	uc003lkl.1	+	1	1945	c.1945G>T	c.(1945-1947)GCC>TCC	p.A649S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.A649S|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	649	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTCGTAGTGGCCGTCCAGGA	0.706													50	98					5.82388e-19	6.82633e-19	1	1	0	
PCDHGA11	56105	broad.mit.edu	37	5	140801986	140801986	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140801986A>G	uc003lkq.1	+	1	1450	c.1192A>G	c.(1192-1194)ACT>GCT	p.T398A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.T398A|PCDHGA11_uc003lkp.1_Missense_Mutation_p.T398A	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	398	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTAGAAAAGACTTATGGAAA	0.403													22	43					0	0	1	0	0	
PCDHGA11	56105	broad.mit.edu	37	5	140802023	140802023	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140802023T>C	uc003lkq.1	+	1	1487	c.1229T>C	c.(1228-1230)GTG>GCG	p.V410A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.V410A|PCDHGA11_uc003lkp.1_Missense_Mutation_p.V410A	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	410	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAAGCAGAGTGCTGGACAGG	0.428													35	76					0	0	1	0	0	
PCDHGA11	56105	broad.mit.edu	37	5	140802987	140802987	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140802987C>T	uc003lkq.1	+	1	2451	c.2193C>T	c.(2191-2193)GGC>GGT	p.G731G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Silent_p.G731G|PCDHGA11_uc003lkp.1_Intron|PCDHGB8P_uc011daz.1_5'Flank	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	731	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTCTGAAGGCGGGTTGGCAG	0.587													18	58					0	0	1	0	0	
PCDHGB8P	56120	broad.mit.edu	37	5	140807610	140807610	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140807610A>G	uc011daz.1	+	1	1758	c.1399A>G	c.(1399-1401)ACC>GCC	p.T467A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_5'Flank|PCDHGA12_uc003lkt.1_5'Flank	NR_001297				Homo sapiens PCDH-psi3 pseudogene, mRNA sequence.												0						CTACCTGGTGACCAAGGTGGT	0.652													19	51					0	0	1	0	0	
PCDHGA12	26025	broad.mit.edu	37	5	140811351	140811351	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140811351A>G	uc003lkt.1	+	1	1194	c.1025A>G	c.(1024-1026)GAC>GGC	p.D342G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Missense_Mutation_p.D342G	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	342	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGTGAACGACAATGCCCCA	0.493													42	71					0	0	1	0	0	
PCDHGA12	26025	broad.mit.edu	37	5	140812460	140812460	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140812460C>T	uc003lkt.1	+	1	2303	c.2134C>T	c.(2134-2136)CTG>TTG	p.L712L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Silent_p.L712L	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	712	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCTTGCTGCTGGCGCTCAG	0.647													67	113					0	0	1	0	0	
PCDHGC4	56098	broad.mit.edu	37	5	140865298	140865298	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140865298C>T	uc003lky.1	+	1	558	c.558C>T	c.(556-558)AGC>AGT	p.S186S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Silent_p.S186S	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	186	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAAGCGCAGCGACGGCAGCC	0.557													30	61					0	0	1	0	0	
PCDHGC4	56098	broad.mit.edu	37	5	140866394	140866394	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140866394C>T	uc003lky.1	+	1	1654	c.1654C>T	c.(1654-1656)CGT>TGT	p.R552C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.R552C|PCDHGC5_uc011dbc.1_5'Flank|PCDHGC5_uc003lla.1_5'Flank	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	552	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTAACAGTTCGTCTATTTGT	0.567													50	95					0	0	1	0	0	
DIAPH1	1729	broad.mit.edu	37	5	140951552	140951552	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:140951552C>T	uc003llb.3	-	17	2555	c.2414G>A	c.(2413-2415)CGC>CAC	p.R805H	DIAPH1_uc003llc.3_Missense_Mutation_p.R796H|DIAPH1_uc010jgc.1_Missense_Mutation_p.R244H	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	805	FH2.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTCTCAAAGCGGTCCTCCTT	0.498													38	72					0	0	1	0	0	
RELL2	285613	broad.mit.edu	37	5	141019684	141019684	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:141019684G>T	uc003lli.2	+	6	1549	c.701G>T	c.(700-702)AGC>ATC	p.S234I	RELL2_uc003llh.2_Missense_Mutation_p.S234I|RELL2_uc003llg.2_Missense_Mutation_p.S168I|RELL2_uc010jgf.2_Missense_Mutation_p.S168I|FCHSD1_uc010jgg.2_3'UTR|FCHSD1_uc003llj.2_RNA|FCHSD1_uc003llk.2_3'UTR	NM_001130029	NP_001123501	Q8NC24	RELL2_HUMAN	RELT-like 2	234						integral to membrane|plasma membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCCTAGCCAGCCCCCCAGTA	0.662													21	44					1.96292e-10	2.12899e-10	1	1	0	
PCDH1	5097	broad.mit.edu	37	5	141244951	141244951	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:141244951G>A	uc003llq.2	-	3	1062	c.945C>T	c.(943-945)ATC>ATT	p.I315I	PCDH1_uc003llp.2_Silent_p.I315I|PCDH1_uc011dbf.1_Silent_p.I293I	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	315	Extracellular (Potential).|Cadherin 3.				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		ATGTGTATTCGATTTCTGCAT	0.483													44	90					0	0	1	0	0	
PCDH12	51294	broad.mit.edu	37	5	141335704	141335704	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:141335704G>A	uc003llx.2	-	1	2924	c.1713C>T	c.(1711-1713)AGC>AGT	p.S571S		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	571	Extracellular (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTTTCCATCGCTGAGCACAG	0.602													30	48					0	0	1	0	0	
PCDH12	51294	broad.mit.edu	37	5	141336702	141336702	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:141336702C>A	uc003llx.2	-	1	1926	c.715G>T	c.(715-717)GAC>TAC	p.D239Y		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	239	Extracellular (Potential).|Cadherin 2.				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCTATTGTCATTGGAGTCC	0.488													26	67					2.48779e-11	2.72679e-11	1	1	0	
PCDH12	51294	broad.mit.edu	37	5	141337067	141337067	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:141337067G>A	uc003llx.2	-	1	1561	c.350C>T	c.(349-351)GCT>GTT	p.A117V		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	117	Cadherin 1.|Extracellular (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGGATCAGAGCCAAATCCCC	0.582													44	74					0	0	1	0	0	
NR3C1	2908	broad.mit.edu	37	5	142780030	142780030	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:142780030G>A	uc003lmz.2	-	2	867	c.375C>T	c.(373-375)AGC>AGT	p.S125S	NR3C1_uc003lmy.2_Silent_p.S125S|NR3C1_uc003lna.2_Silent_p.S125S|NR3C1_uc003lnb.2_Silent_p.S125S|NR3C1_uc011dbk.1_Intron|NR3C1_uc003lnc.2_Silent_p.S125S|NR3C1_uc003lnd.2_Silent_p.S125S|NR3C1_uc003lne.2_Silent_p.S125S|NR3C1_uc003lnf.2_Silent_p.S125S|NR3C1_uc003lng.2_Silent_p.S125S|NR3C1_uc003lnh.2_Silent_p.S125S|NR3C1_uc003lni.2_Silent_p.S125S	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	125	Modulating.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	GGTTTGCAATGCTTTCTTCCA	0.488													54	114					0	0	1	0	0	
KCTD16	57528	broad.mit.edu	37	5	143586725	143586725	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:143586725A>C	uc003lnm.1	+	3	1077	c.448A>C	c.(448-450)ATC>CTC	p.I150L	KCTD16_uc003lnn.1_Missense_Mutation_p.I150L	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	150						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			CGACACAAGAATCTGCCCCCC	0.547													29	70					0	0	1	0	0	
TCERG1	10915	broad.mit.edu	37	5	145886637	145886637	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:145886637G>A	uc003lob.2	+	19	2817	c.2777G>A	c.(2776-2778)CGA>CAA	p.R926Q	TCERG1_uc003loc.2_Missense_Mutation_p.R905Q	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	926	FF 4.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGACCCTCCGAAAAGATCAC	0.328													59	112					0	0	1	0	0	
PPP2R2B	5521	broad.mit.edu	37	5	146070775	146070775	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:146070775G>A	uc003loe.2	-	4	888	c.363C>T	c.(361-363)AGC>AGT	p.S121S	PPP2R2B_uc010jgm.2_Silent_p.S110S|PPP2R2B_uc003log.3_Silent_p.S121S|PPP2R2B_uc003lof.3_Silent_p.S121S|PPP2R2B_uc003loi.3_Silent_p.S124S|PPP2R2B_uc003loh.3_Silent_p.S121S|PPP2R2B_uc003loj.3_Silent_p.S101S|PPP2R2B_uc003lok.3_Silent_p.S110S|PPP2R2B_uc011dbu.1_Silent_p.S127S|PPP2R2B_uc011dbv.1_Silent_p.S179S	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	121	WD 2.				apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TATCACGCTCGCTGACTTTCC	0.507													35	50					0	0	1	0	0	
DPYSL3	1809	broad.mit.edu	37	5	146778797	146778797	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:146778797C>T	uc003lon.1	-	11	1239	c.1129G>A	c.(1129-1131)GAA>AAA	p.E377K	DPYSL3_uc003loo.2_Missense_Mutation_p.E491K	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	377					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACTGGTTTTCGTCCATTTTC	0.423													58	108					0	0	1	0	0	
JAKMIP2	9832	broad.mit.edu	37	5	147020340	147020340	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:147020340T>G	uc003loq.1	-	9	1710	c.1328A>C	c.(1327-1329)GAT>GCT	p.D443A	JAKMIP2_uc011dbx.1_Missense_Mutation_p.D401A|JAKMIP2_uc003lor.1_Missense_Mutation_p.D443A|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.D443A	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	443						Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCTCTGAATCCATAGAGTC	0.428													41	47					0	0	1	0	0	
FBXO38	81545	broad.mit.edu	37	5	147803583	147803583	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:147803583C>T	uc003lpf.1	+	13	1761	c.1641C>T	c.(1639-1641)ATC>ATT	p.I547I	FBXO38_uc003lpg.1_Silent_p.I547I|FBXO38_uc003lph.2_Silent_p.I547I	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	547						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAAGACATCGTCCAAGAAG	0.433													23	59					0	0	1	0	0	
HTR4	3360	broad.mit.edu	37	5	147902810	147902810	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:147902810A>G	uc003lpn.2	-	5	617	c.453T>C	c.(451-453)TTT>TTC	p.F151F	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Silent_p.F151F|HTR4_uc003lpj.1_Silent_p.F151F|HTR4_uc003lpk.2_Silent_p.F151F|HTR4_uc011dby.1_Silent_p.F151F|HTR4_uc003lpl.2_Silent_p.F151F|HTR4_uc003lpm.2_Silent_p.F151F|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Silent_p.F151F	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	151	Helical; Name=4; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	GAAAAGAAATAAACGTGGGGA	0.463													23	51					0	0	1	0	0	
SH3TC2	79628	broad.mit.edu	37	5	148406848	148406848	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:148406848A>G	uc003lpu.2	-	11	2599	c.2447T>C	c.(2446-2448)TTG>TCG	p.L816S	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Missense_Mutation_p.L460S|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_Missense_Mutation_p.L363S|SH3TC2_uc010jgx.2_Missense_Mutation_p.L809S|SH3TC2_uc003lpv.1_Missense_Mutation_p.L363S|SH3TC2_uc011dbz.1_Missense_Mutation_p.L701S	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	816							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGCACATCCAAAGCCTTCTT	0.547													46	89					0	0	1	0	0	
AFAP1L1	134265	broad.mit.edu	37	5	148679892	148679892	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:148679892C>T	uc003lqh.2	+	3	335	c.204C>T	c.(202-204)TTC>TTT	p.F68F	AFAP1L1_uc003lqg.3_Silent_p.F68F|AFAP1L1_uc010jgy.2_Silent_p.F68F	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	68							protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCCCAGCTTCGTGGAATCCC	0.562													15	26					0	0	1	0	0	
AFAP1L1	134265	broad.mit.edu	37	5	148687128	148687128	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:148687128C>T	uc003lqh.2	+	7	830	c.699C>T	c.(697-699)TTC>TTT	p.F233F	AFAP1L1_uc003lqg.3_Silent_p.F233F|AFAP1L1_uc010jgy.2_Silent_p.F233F	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	233	PH 1.						protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAAGCGTTTCGGGCAGTGGG	0.622													15	39					0	0	1	0	0	
AFAP1L1	134265	broad.mit.edu	37	5	148699965	148699965	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:148699965C>T	uc003lqh.2	+	14	1768	c.1637C>T	c.(1636-1638)TCC>TTC	p.S546F	AFAP1L1_uc010jgy.2_Missense_Mutation_p.S546F|AFAP1L1_uc003lqi.1_Missense_Mutation_p.S161F	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	546							protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATGCAAGATCCTGCCAGAAT	0.343													18	46					0	0	1	0	0	
PCYOX1L	78991	broad.mit.edu	37	5	148746955	148746955	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:148746955C>T	uc003lqk.2	+	5	777	c.715C>T	c.(715-717)CTG>TTG	p.L239L	PCYOX1L_uc003lql.2_Silent_p.L222L|PCYOX1L_uc010jgz.2_Silent_p.L163L|PCYOX1L_uc003lqm.2_Silent_p.L121L|PCYOX1L_uc003lqn.2_Silent_p.L149L	NM_024028	NP_076933	Q8NBM8	PCYXL_HUMAN	prenylcysteine oxidase 1 like precursor	239					prenylcysteine catabolic process	extracellular region	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAAGGCAGCCTGTGGTCTGT	0.602											OREG0016912	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	50					0	0	1	0	0	
PDE6A	5145	broad.mit.edu	37	5	149324052	149324052	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:149324052A>C	uc003lrg.3	-	1	305	c.185T>G	c.(184-186)TTT>TGT	p.F62C		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	62					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CAGGAGATCAAAGATGATTTC	0.547													31	44					0	0	1	0	0	
CAMK2A	815	broad.mit.edu	37	5	149607839	149607839	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:149607839C>T	uc003lru.2	-	16	1335	c.1120G>A	c.(1120-1122)GAC>AAC	p.D374N	CAMK2A_uc003lrs.2_Missense_Mutation_p.D85N|CAMK2A_uc003lrt.2_Missense_Mutation_p.D385N	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	374					interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATGCCAGGGTCGCACATCTTC	0.502													12	20					0	0	1	0	0	
DCTN4	51164	broad.mit.edu	37	5	150133162	150133162	+	Silent	SNP	C	T	T	rs144113005	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:150133162C>T	uc003lsv.2	-	3	366	c.264G>A	c.(262-264)ACG>ACA	p.T88T	DCTN4_uc003lsu.2_Silent_p.T31T|DCTN4_uc010jhi.2_Silent_p.T88T|DCTN4_uc010jhj.2_RNA|DCTN4_uc011dck.1_Silent_p.T31T	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	88						centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGAGATGCTCGTGGCCCGAG	0.478													17	38					0	0	1	0	0	
TNIP1	10318	broad.mit.edu	37	5	150418747	150418747	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:150418747G>A	uc003ltf.2	-	12	1763	c.1174C>T	c.(1174-1176)CGC>TGC	p.R392C	TNIP1_uc010jhl.2_RNA|TNIP1_uc010jhm.2_Missense_Mutation_p.R392C|TNIP1_uc010jhn.2_Missense_Mutation_p.R392C|TNIP1_uc011dco.1_Missense_Mutation_p.R392C|TNIP1_uc003lth.2_RNA|TNIP1_uc003lti.2_Missense_Mutation_p.R392C|TNIP1_uc003ltg.2_Missense_Mutation_p.R339C|TNIP1_uc003ltj.2_Missense_Mutation_p.R392C|TNIP1_uc010jho.1_RNA|TNIP1_uc010jhq.1_Missense_Mutation_p.R339C|TNIP1_uc010jhp.1_Missense_Mutation_p.R339C|TNIP1_uc010jhr.1_Missense_Mutation_p.R392C|TNIP1_uc003ltk.2_Missense_Mutation_p.R392C	NM_006058	NP_006049	Q15025	TNIP1_HUMAN	TNFAIP3 interacting protein 1	392	Potential.|Interacts with Nef.				defense response|glycoprotein biosynthetic process|negative regulation of viral genome replication|translation	cytoplasm|nucleus	protein binding			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.0911)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACCTTTTGGCGCAGCTCCTTG	0.582													17	20					0	0	1	0	0	
SLC36A2	153201	broad.mit.edu	37	5	150704958	150704958	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:150704958G>T	uc003lty.2	-	8	1029	c.899C>A	c.(898-900)TCT>TAT	p.S300Y	GM2A_uc011dcs.1_Intron|SLC36A2_uc003ltz.2_RNA|SLC36A2_uc003lua.2_Missense_Mutation_p.S102Y|SLC36A2_uc010jhv.2_Missense_Mutation_p.S300Y	NM_181776	NP_861441	Q495M3	S36A2_HUMAN	solute carrier family 36, member 2	300	Helical; (Potential).				cellular nitrogen compound metabolic process	cytoplasm|integral to membrane|plasma membrane	glycine transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CATTCCCAAAGACAGGATGGC	0.443													10	35					7.03913e-09	7.52015e-09	1	1	0	
SLC36A1	206358	broad.mit.edu	37	5	150838484	150838484	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:150838484G>T	uc003luc.2	+	2	348	c.131G>T	c.(130-132)AGC>ATC	p.S44I	GM2A_uc011dcs.1_Intron|SLC36A1_uc003lub.1_Missense_Mutation_p.S44I|SLC36A1_uc010jhw.1_Missense_Mutation_p.S44I	NM_078483	NP_510968	Q7Z2H8	S36A1_HUMAN	solute carrier family 36 member 1	44	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|ion transport	endoplasmic reticulum|integral to membrane|lysosomal membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			skin(1)	1		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)|all_neural(839;0.138)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glycine(DB00145)|L-Alanine(DB00160)	TTTGGTCAAAGCAATAGCACA	0.552													20	42					1.66031e-10	1.80435e-10	1	1	0	
FAT2	2196	broad.mit.edu	37	5	150924751	150924751	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:150924751C>T	uc003lue.3	-	9	5950	c.5937G>A	c.(5935-5937)GAG>GAA	p.E1979E	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1979	Extracellular (Potential).|Cadherin 17.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCTGCAAGTTCTCCTTCACAG	0.453													26	47					0	0	1	0	0	
FAT2	2196	broad.mit.edu	37	5	150930303	150930303	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:150930303C>T	uc003lue.3	-	7	4439	c.4426G>A	c.(4426-4428)GAC>AAC	p.D1476N	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1476	Extracellular (Potential).|Cadherin 13.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTGCCCTTGTCTTGATCTATG	0.562													9	21					0	0	1	0	0	
FAT2	2196	broad.mit.edu	37	5	150946848	150946848	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:150946848A>G	uc003lue.3	-	1	1658	c.1645T>C	c.(1645-1647)TCC>CCC	p.S549P	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.S549P	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	549	Cadherin 4.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGAAAAATGGACACTTCCTTC	0.473													37	66					0	0	1	0	0	
FAT2	2196	broad.mit.edu	37	5	150948206	150948206	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:150948206C>A	uc003lue.3	-	1	300	c.287G>T	c.(286-288)AGA>ATA	p.R96I	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.R96I	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	96	Extracellular (Potential).|Cadherin 1.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGTCCTTATTCTTAGGAAGCA	0.507													96	187					9.06123e-46	1.12606e-45	1	1	0	
GLRA1	2741	broad.mit.edu	37	5	151208496	151208496	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:151208496G>A	uc003lut.2	-	8	1332	c.1045C>T	c.(1045-1047)CGG>TGG	p.R349W	GLRA1_uc003lur.2_Missense_Mutation_p.R349W|GLRA1_uc003lus.2_Missense_Mutation_p.R266W	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	349	Cytoplasmic (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGATGTCTCCGCTTCCTCCTG	0.463													100	179					0	0	1	0	0	
FAM114A2	10827	broad.mit.edu	37	5	153406049	153406049	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:153406049C>A	uc003lvb.2	-	8	1411	c.823G>T	c.(823-825)GAA>TAA	p.E275*	FAM114A2_uc003lvc.2_Nonsense_Mutation_p.E275*|FAM114A2_uc003lvd.2_Nonsense_Mutation_p.E275*|FAM114A2_uc003lve.2_Nonsense_Mutation_p.E91*|FAM114A2_uc011dda.1_Nonsense_Mutation_p.E205*	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	275	Potential.						purine nucleotide binding				0						GTCTCTAATTCTTCTCCACTC	0.318													10	22					0.000673444	0.000684558	1	1	0	
LARP1	23367	broad.mit.edu	37	5	154181870	154181870	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:154181870G>A	uc003lvp.2	+	11	2449	c.2020G>A	c.(2020-2022)GAA>AAA	p.E674K	LARP1_uc003lvo.2_Missense_Mutation_p.E597K|LARP1_uc010jie.1_Missense_Mutation_p.E469K	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	674							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GATGAGCGCCGAACTGGCCAA	0.552													29	48					0	0	1	0	0	
LARP1	23367	broad.mit.edu	37	5	154182861	154182861	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:154182861G>T	uc003lvp.2	+	12	2550	c.2121G>T	c.(2119-2121)GAG>GAT	p.E707D	LARP1_uc003lvo.2_Missense_Mutation_p.E630D|LARP1_uc010jie.1_Missense_Mutation_p.E502D	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	707							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AAGAAGTCGAGAACTTCAAAA	0.517													30	54					5.60225e-13	6.24063e-13	1	1	0	
LARP1	23367	broad.mit.edu	37	5	154183768	154183768	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:154183768G>A	uc003lvp.2	+	14	2876	c.2447G>A	c.(2446-2448)CGA>CAA	p.R816Q	LARP1_uc003lvo.2_Missense_Mutation_p.R739Q	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	816							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CAGATGCCTCGAAAAAGAAAG	0.507													12	110					0	0	1	0	0	
FAM71B	153745	broad.mit.edu	37	5	156589906	156589906	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:156589906G>A	uc003lwn.2	-	2	1470	c.1370C>T	c.(1369-1371)GCG>GTG	p.A457V		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	457	Bipartite nuclear localization signal (Potential).					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTTGTCCCCCGCTCTCCTGCG	0.488													62	108					0	0	1	0	0	
CYFIP2	26999	broad.mit.edu	37	5	156734839	156734839	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:156734839G>T	uc003lwq.2	+	11	1004	c.866G>T	c.(865-867)AGA>ATA	p.R289I	CYFIP2_uc011ddn.1_Missense_Mutation_p.R263I|CYFIP2_uc011ddo.1_Missense_Mutation_p.R93I|CYFIP2_uc003lwr.2_Missense_Mutation_p.R289I|CYFIP2_uc003lws.2_Missense_Mutation_p.R289I|CYFIP2_uc003lwt.2_Missense_Mutation_p.R167I|CYFIP2_uc011ddp.1_Missense_Mutation_p.R23I	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	289					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCCAAGAAGAGAATTAATCTT	0.458													9	7					1.12685e-05	1.16379e-05	1	1	0	
CYFIP2	26999	broad.mit.edu	37	5	156747684	156747684	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:156747684G>T	uc003lwq.2	+	17	1683	c.1545G>T	c.(1543-1545)AAG>AAT	p.K515N	CYFIP2_uc011ddn.1_Missense_Mutation_p.K489N|CYFIP2_uc011ddo.1_Missense_Mutation_p.K319N|CYFIP2_uc003lwr.2_Missense_Mutation_p.K515N|CYFIP2_uc003lws.2_Missense_Mutation_p.K515N|CYFIP2_uc003lwt.2_Missense_Mutation_p.K393N|CYFIP2_uc011ddp.1_Missense_Mutation_p.K249N	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	515					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CAATTCGAAAGACCATCTGTG	0.542													18	34					5.03518e-11	5.49976e-11	1	1	0	
CYFIP2	26999	broad.mit.edu	37	5	156786115	156786115	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:156786115G>A	uc003lwq.2	+	26	2914	c.2776G>A	c.(2776-2778)GCT>ACT	p.A926T	CYFIP2_uc011ddn.1_Missense_Mutation_p.A900T|CYFIP2_uc011ddo.1_Missense_Mutation_p.A730T|CYFIP2_uc003lwr.2_Missense_Mutation_p.A926T|CYFIP2_uc003lws.2_Missense_Mutation_p.A926T|CYFIP2_uc003lwt.2_Missense_Mutation_p.A829T|CYFIP2_uc011ddp.1_Missense_Mutation_p.A660T	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	951					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCAGGGCATCGCTGTGGTCAT	0.483													47	89					0	0	1	0	0	
RNF145	153830	broad.mit.edu	37	5	158596042	158596042	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:158596042C>T	uc003lxp.2	-	8	1273	c.960G>A	c.(958-960)ACG>ACA	p.T320T	RNF145_uc011ddy.1_Silent_p.T334T|RNF145_uc003lxo.1_Silent_p.T348T|RNF145_uc011ddz.1_Silent_p.T337T|RNF145_uc010jiq.1_Silent_p.T350T	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	320	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGATTAACAGCGTTACTCCTT	0.383													51	100					0	0	1	0	0	
PWWP2A	114825	broad.mit.edu	37	5	159507740	159507740	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:159507740C>T	uc003lxv.3	-	3	1644	c.1587G>A	c.(1585-1587)ACG>ACA	p.T529T	PWWP2A_uc011dec.1_Intron	NM_052927	NP_443159	Q96N64	PWP2A_HUMAN	PWWP domain containing 2A isoform a	Error:Variant_position_missing_in_Q96N64_after_alignment											0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAGCAGGACTCGTCACTGTCT	0.418													4	1					0	0	1	0	0	
C1QTNF2	114898	broad.mit.edu	37	5	159781843	159781843	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:159781843C>T	uc003lyd.2	-	2	315	c.311G>A	c.(310-312)CGA>CAA	p.R104Q		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	59	Collagen-like.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAAGCCCATTCGTCCCATCAT	0.662													9	23					0	0	1	0	0	
ATP10B	23120	broad.mit.edu	37	5	159992649	159992649	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:159992649G>C	uc003lym.1	-	26	5044	c.4197C>G	c.(4195-4197)CAC>CAG	p.H1399Q	ATP10B_uc010jit.1_Missense_Mutation_p.H649Q	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	1399	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATCTCTGTTCGTGGAGTACTG	0.557													48	120					0	0	1	0	0	
ATP10B	23120	broad.mit.edu	37	5	159992842	159992842	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:159992842T>C	uc003lym.1	-	26	4851	c.4004A>G	c.(4003-4005)GAC>GGC	p.D1335G	ATP10B_uc010jit.1_Missense_Mutation_p.D585G	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	1335	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGGGAGTTTGTCAATTTTCTG	0.468													53	111					0	0	1	0	0	
GABRA6	2559	broad.mit.edu	37	5	161128750	161128750	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:161128750A>G	uc003lyu.2	+	9	1671	c.1333A>G	c.(1333-1335)ACA>GCA	p.T445A	GABRA6_uc003lyv.2_Missense_Mutation_p.T216A	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	445					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTCCAAAGATACAATGGAAGT	0.388										TCGA Ovarian(5;0.080)			37	77					0	0	1	0	0	
GABRA1	2554	broad.mit.edu	37	5	161300284	161300284	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:161300284G>T	uc010jiw.2	+	6	885	c.417G>T	c.(415-417)ATG>ATT	p.M139I	GABRA1_uc010jix.2_Missense_Mutation_p.M139I|GABRA1_uc010jiy.2_Missense_Mutation_p.M139I|GABRA1_uc003lyx.3_Missense_Mutation_p.M139I|GABRA1_uc010jiz.2_Missense_Mutation_p.M139I|GABRA1_uc010jja.2_Missense_Mutation_p.M139I|GABRA1_uc010jjb.2_Missense_Mutation_p.M139I	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	139	Extracellular (Probable).			Missing (in Ref. 4; CAA31925).	gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	CCCACAACATGACCATGCCCA	0.473													28	60					1.77063e-15	2.01907e-15	1	1	0	
GABRA1	2554	broad.mit.edu	37	5	161309607	161309607	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:161309607G>A	uc010jiw.2	+	8	1071	c.603G>A	c.(601-603)GAG>GAA	p.E201E	GABRA1_uc010jix.2_Silent_p.E201E|GABRA1_uc010jiy.2_Silent_p.E201E|GABRA1_uc003lyx.3_Silent_p.E201E|GABRA1_uc010jiz.2_Silent_p.E201E|GABRA1_uc010jja.2_Silent_p.E201E|GABRA1_uc010jjb.2_Silent_p.E201E	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	201	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	GGACCAGAGAGCCAGCACGCT	0.393													27	48					0	0	1	0	0	
GABRA1	2554	broad.mit.edu	37	5	161317999	161317999	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:161317999C>A	uc010jiw.2	+	9	1267	c.799C>A	c.(799-801)CTC>ATC	p.L267I	GABRA1_uc010jix.2_Missense_Mutation_p.L267I|GABRA1_uc010jiy.2_Missense_Mutation_p.L267I|GABRA1_uc003lyx.3_Missense_Mutation_p.L267I|GABRA1_uc010jiz.2_Missense_Mutation_p.L267I|GABRA1_uc010jja.2_Missense_Mutation_p.L267I|GABRA1_uc010jjb.2_Missense_Mutation_p.L267I	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	267	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	GACAGTGATTCTCTCACAAGT	0.418													24	53					5.35356e-11	5.83973e-11	1	1	0	
GABRA1	2554	broad.mit.edu	37	5	161324122	161324122	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:161324122G>T	uc010jiw.2	+	11	1533	c.1065G>T	c.(1063-1065)AAG>AAT	p.K355N	GABRA1_uc010jix.2_Missense_Mutation_p.K355N|GABRA1_uc010jiy.2_Missense_Mutation_p.K355N|GABRA1_uc003lyx.3_Missense_Mutation_p.K355N|GABRA1_uc010jiz.2_Missense_Mutation_p.K355N|GABRA1_uc010jja.2_Missense_Mutation_p.K355N|GABRA1_uc010jjb.2_Missense_Mutation_p.K355N	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	355	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	TACAGCCAAAGAAAGTAAAGG	0.433													36	94					6.97489e-18	8.11623e-18	1	1	0	
GABRA1	2554	broad.mit.edu	37	5	161324264	161324264	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:161324264G>A	uc010jiw.2	+	11	1675	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	GABRA1_uc010jix.2_Missense_Mutation_p.E403K|GABRA1_uc010jiy.2_Missense_Mutation_p.E403K|GABRA1_uc003lyx.3_Missense_Mutation_p.E403K|GABRA1_uc010jiz.2_Missense_Mutation_p.E403K|GABRA1_uc010jja.2_Missense_Mutation_p.E403K|GABRA1_uc010jjb.2_Missense_Mutation_p.E403K	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	403	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	GGTCAAGCCCGAAACAAAACC	0.473													44	114					0	0	1	0	0	
GABRG2	2566	broad.mit.edu	37	5	161495013	161495013	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:161495013C>T	uc003lyz.3	+	1	366	c.8C>T	c.(7-9)TCG>TTG	p.S3L	GABRG2_uc010jjc.2_Missense_Mutation_p.S3L|GABRG2_uc003lyy.3_Missense_Mutation_p.S3L|GABRG2_uc011dej.1_5'UTR	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	3					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GCGATGAGTTCGCCAAATATA	0.453													21	38					0	0	1	0	0	
GABRG2	2566	broad.mit.edu	37	5	161530961	161530961	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:161530961G>T	uc003lyz.3	+	6	1056	c.698G>T	c.(697-699)AGA>ATA	p.R233I	GABRG2_uc010jjc.2_Missense_Mutation_p.R273I|GABRG2_uc003lyy.3_Missense_Mutation_p.R233I|GABRG2_uc011dej.1_Missense_Mutation_p.R138I	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	233	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GGCGACACAAGATCCTGGAGG	0.413													33	51					1.99505e-19	2.34416e-19	1	1	0	
HMMR	3161	broad.mit.edu	37	5	162900198	162900198	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:162900198A>G	uc003lzf.2	+	8	843	c.661A>G	c.(661-663)AAA>GAA	p.K221E	HMMR_uc003lzh.2_Missense_Mutation_p.K222E|HMMR_uc003lzg.2_Missense_Mutation_p.K206E|HMMR_uc011dem.1_Missense_Mutation_p.K135E	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	221						cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		TTCAATAGAGAAAGAAAAGAT	0.264													5	22					0	0	1	0	0	
HMMR	3161	broad.mit.edu	37	5	162900450	162900450	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:162900450A>C	uc003lzf.2	+	9	970	c.788A>C	c.(787-789)GAG>GCG	p.E263A	HMMR_uc003lzh.2_Missense_Mutation_p.E264A|HMMR_uc003lzg.2_Missense_Mutation_p.E248A|HMMR_uc011dem.1_Missense_Mutation_p.E177A	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	263						cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		AATTTGAAAGAGAAGAATGAT	0.308													28	67					0	0	1	0	0	
HMMR	3161	broad.mit.edu	37	5	162902491	162902491	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:162902491C>T	uc003lzf.2	+	11	1260	c.1078C>T	c.(1078-1080)CTC>TTC	p.L360F	HMMR_uc003lzh.2_Missense_Mutation_p.L361F|HMMR_uc003lzg.2_Missense_Mutation_p.L345F|HMMR_uc011dem.1_Missense_Mutation_p.L274F	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	360						cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		TCATCAGAAGCTCTGTTCTTT	0.353													16	45					0	0	1	0	0	
ODZ2	57451	broad.mit.edu	37	5	167551866	167551866	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:167551866G>A	uc010jjd.2	+	11	2020	c.2020G>A	c.(2020-2022)GAT>AAT	p.D674N	ODZ2_uc003lzr.3_Missense_Mutation_p.D442N|ODZ2_uc003lzt.3_Missense_Mutation_p.D38N|ODZ2_uc010jje.2_5'UTR|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGATTGCTTGGATCCCACCTG	0.507													10	13					0	0	1	0	0	
ODZ2	57451	broad.mit.edu	37	5	167671461	167671461	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:167671461C>T	uc010jjd.2	+	26	5530	c.5530C>T	c.(5530-5532)CGA>TGA	p.R1844*	ODZ2_uc003lzr.3_Nonsense_Mutation_p.R1614*|ODZ2_uc003lzt.3_Nonsense_Mutation_p.R1217*|ODZ2_uc010jje.2_Nonsense_Mutation_p.R1108*	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TGACTATGATCGAAATATTCG	0.502													12	22					0	0	1	0	0	
WWC1	23286	broad.mit.edu	37	5	167855774	167855774	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:167855774G>A	uc003lzu.2	+	13	2075	c.1982G>A	c.(1981-1983)CGA>CAA	p.R661Q	WWC1_uc003lzv.2_Missense_Mutation_p.R661Q|WWC1_uc011den.1_Missense_Mutation_p.R661Q|WWC1_uc003lzw.2_Missense_Mutation_p.R460Q|WWC1_uc010jjf.1_5'Flank	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	661	C2.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GGTGCGACCCGAATTCAGATT	0.547													30	33					0	0	1	0	0	
PANK3	79646	broad.mit.edu	37	5	167990936	167990936	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:167990936T>G	uc003lzz.1	-	4	1070	c.770A>C	c.(769-771)GAT>GCT	p.D257A	uc003maa.1_5'Flank|MIR103-1_hsa-mir-103-1|MI0000109_5'Flank	NM_024594	NP_078870	Q9H999	PANK3_HUMAN	pantothenate kinase 3	257					coenzyme A biosynthetic process	cytoplasm|nucleus	ATP binding|pantothenate kinase activity			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0441)|all_lung(126;0.0909)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0989)|OV - Ovarian serous cystadenocarcinoma(192;0.147)|Epithelial(171;0.188)		TCTTTCATAATCTCCTCCATA	0.378													73	130					0	0	1	0	0	
DOCK2	1794	broad.mit.edu	37	5	169141087	169141087	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:169141087G>A	uc003maf.2	+	18	1795	c.1715G>A	c.(1714-1716)CGA>CAA	p.R572Q	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.R64Q|DOCK2_uc010jjl.1_Missense_Mutation_p.R90Q	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	572	DHR-1.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCTTCTTATCGACACCATGTG	0.572													27	54					0	0	1	0	0	
LCP2	3937	broad.mit.edu	37	5	169679511	169679511	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:169679511G>T	uc003man.1	-	19	1457	c.1250C>A	c.(1249-1251)TCA>TAA	p.S417*	C5orf58_uc003mal.2_RNA|LCP2_uc011des.1_Nonsense_Mutation_p.S212*|LCP2_uc011det.1_Nonsense_Mutation_p.S246*	NM_005565	NP_005556	Q13094	LCP2_HUMAN	lymphocyte cytosolic protein 2	417					immune response|platelet activation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	cytosol	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.247)		TTCATTTAATGAATTCTGAAA	0.308													6	6					5.9392e-07	6.20744e-07	1	1	0	
NPM1	4869	broad.mit.edu	37	5	170818793	170818793	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:170818793G>A	uc011dex.1	+	5	477	c.342G>A	c.(340-342)CAG>CAA	p.Q114Q	NPM1_uc003mbh.2_Silent_p.Q114Q|NPM1_uc003mbi.2_Silent_p.Q114Q|NPM1_uc003mbj.2_Silent_p.Q114Q	NM_002520	NP_002511	P06748	NPM_HUMAN	nucleophosmin 1 isoform 1	114	Necessary for interaction with APEX1.|Required for interaction with SENP3.				anti-apoptosis|cell aging|CenH3-containing nucleosome assembly at centromere|centrosome cycle|DNA repair|interspecies interaction between organisms|intracellular protein transport|negative regulation of cell proliferation|negative regulation of centrosome duplication|nucleocytoplasmic transport|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|regulation of endodeoxyribonuclease activity|regulation of endoribonuclease activity|ribosome assembly|signal transduction	nucleolus|nucleoplasm|ribonucleoprotein complex|spindle pole centrosome	histone binding|NF-kappaB binding|protein binding|protein heterodimerization activity|protein homodimerization activity|ribosomal large subunit binding|ribosomal small subunit binding|RNA binding|Tat protein binding|transcription coactivator activity|unfolded protein binding		NPM1/ALK(632)	haematopoietic_and_lymphoid_tissue(3109)|skin(1)	3110	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TTAGTGGACAGCACTTAGTAG	0.403			T|F 	ALK|RARA|MLF1	NHL|APL|AML								23	40					0	0	1	0	0	
FBXW11	23291	broad.mit.edu	37	5	171295779	171295779	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:171295779G>A	uc003mbm.1	-	12	1860	c.1489C>T	c.(1489-1491)CGG>TGG	p.R497W	FBXW11_uc011dey.1_Missense_Mutation_p.R465W|FBXW11_uc003mbl.1_Missense_Mutation_p.R484W|FBXW11_uc003mbn.1_Missense_Mutation_p.R463W	NM_012300	NP_036432	Q9UKB1	FBW1B_HUMAN	F-box and WD repeat domain containing 11 isoform	497	WD 7.				cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of circadian rhythm|positive regulation of proteolysis|positive regulation of transcription, DNA-dependent|protein dephosphorylation|protein destabilization|protein polyubiquitination|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	centrosome|cytosol|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)|breast(1)	2	Renal(175;0.000159)|Lung NSC(126;0.00384)|all_lung(126;0.00659)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AACTGGAGCCGAAACACACGT	0.413													27	42					0	0	1	0	0	
FBXW11	23291	broad.mit.edu	37	5	171299912	171299912	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:171299912C>T	uc003mbm.1	-	9	1612	c.1241G>A	c.(1240-1242)CGC>CAC	p.R414H	FBXW11_uc011dey.1_Missense_Mutation_p.R382H|FBXW11_uc003mbl.1_Missense_Mutation_p.R401H|FBXW11_uc003mbn.1_Missense_Mutation_p.R380H	NM_012300	NP_036432	Q9UKB1	FBW1B_HUMAN	F-box and WD repeat domain containing 11 isoform	414	WD 5.				cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of circadian rhythm|positive regulation of proteolysis|positive regulation of transcription, DNA-dependent|protein dephosphorylation|protein destabilization|protein polyubiquitination|rhythmic process|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	centrosome|cytosol|nucleus|SCF ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)|breast(1)	2	Renal(175;0.000159)|Lung NSC(126;0.00384)|all_lung(126;0.00659)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AACAACCAGGCGATCCCTGTA	0.473													32	51					0	0	1	0	0	
ERGIC1	57222	broad.mit.edu	37	5	172341770	172341770	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:172341770G>A	uc003mbw.3	+	5	498	c.304G>A	c.(304-306)GAC>AAC	p.D102N	ERGIC1_uc003mby.3_Missense_Mutation_p.D10N|ERGIC1_uc011dfa.1_Missense_Mutation_p.D47N|ERGIC1_uc003mbz.3_Missense_Mutation_p.D57N	NM_001031711	NP_001026881	Q969X5	ERGI1_HUMAN	endoplasmic reticulum-golgi intermediate	102	Lumenal (Potential).				ER to Golgi vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	protein binding			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGGCCACATCGACAACTCCAT	0.572													6	59					0	0	1	0	0	
RPL26L1	51121	broad.mit.edu	37	5	172396461	172396461	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:172396461C>A	uc003mcc.2	+	4	397	c.355C>A	c.(355-357)CTT>ATT	p.L119I		NM_016093	NP_057177	Q9UNX3	RL26L_HUMAN	ribosomal protein L26-like 1	119					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GAAAAAAATTCTTGAACGCAA	0.403													32	81					2.61193e-14	2.9448e-14	1	1	0	
C5orf41	153222	broad.mit.edu	37	5	172513516	172513516	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:172513516G>T	uc003mch.2	+	3	326	c.22G>T	c.(22-24)GGA>TGA	p.G8*	C5orf41_uc003mcg.2_Nonsense_Mutation_p.G8*|C5orf41_uc003mcf.2_Nonsense_Mutation_p.G8*|C5orf41_uc011dfd.1_Nonsense_Mutation_p.G8*	NM_153607	NP_705835	Q8IUR6	CE041_HUMAN	luman-recruiting factor	8							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(175;0.000159)|Lung NSC(126;0.00223)|all_lung(126;0.00391)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TAGTGTAAGCGGAATGGATCC	0.438													42	97					2.95478e-19	3.46784e-19	1	1	0	
BNIP1	662	broad.mit.edu	37	5	172590728	172590728	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:172590728T>G	uc003mcj.3	+	6	595	c.491T>G	c.(490-492)GTC>GGC	p.V164G	BNIP1_uc003mci.3_Missense_Mutation_p.V207G|BNIP1_uc003mck.3_Missense_Mutation_p.V173G|BNIP1_uc003mcl.3_Missense_Mutation_p.V130G	NM_001205	NP_001196	Q12981	SEC20_HUMAN	BCL2/adenovirus E1B 19kD interacting protein 1	164	Cytoplasmic (Potential).				anti-apoptosis|apoptosis|endoplasmic reticulum membrane fusion|endoplasmic reticulum organization|induction of apoptosis|vesicle-mediated transport	integral to endoplasmic reticulum membrane|nuclear envelope|SNARE complex	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			TTTGTTTCAGTCACTTCTTCA	0.493													13	43					0	0	1	0	0	
CDHR2	54825	broad.mit.edu	37	5	176003151	176003151	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:176003151G>A	uc003mem.1	+	12	1225	c.1159G>A	c.(1159-1161)GAT>AAT	p.D387N	CDHR2_uc003men.1_Missense_Mutation_p.D387N	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	387	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding	p.D387N(1)		ovary(2)	2						CATCCCCATCGATGACCTCAC	0.657													35	47					0	0	1	0	0	
HK3	3101	broad.mit.edu	37	5	176308305	176308305	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:176308305C>T	uc003mfa.2	-	18	2717	c.2625G>A	c.(2623-2625)CCG>CCA	p.P875P	HK3_uc003mez.2_Silent_p.P431P	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	875	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGACTCACCGCGGGTGCAGCT	0.672													30	67					0	0	1	0	0	
NSD1	64324	broad.mit.edu	37	5	176636805	176636805	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:176636805G>T	uc003mfr.3	+	5	1543	c.1405G>T	c.(1405-1407)GAC>TAC	p.D469Y	NSD1_uc003mft.3_Missense_Mutation_p.D200Y|NSD1_uc003mfs.1_Missense_Mutation_p.D366Y|NSD1_uc011dfx.1_Missense_Mutation_p.D117Y	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	469					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		GTCAGAACATGACCTGTTGCT	0.423			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			47	89					1.30916e-28	1.59356e-28	1	1	0	
NSD1	64324	broad.mit.edu	37	5	176671259	176671259	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:176671259G>T	uc003mfr.3	+	9	4504	c.4366G>T	c.(4366-4368)GAT>TAT	p.D1456Y	NSD1_uc003mft.3_Missense_Mutation_p.D1187Y|NSD1_uc003mfs.1_Missense_Mutation_p.D1353Y|NSD1_uc011dfx.1_Missense_Mutation_p.D1104Y	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1456					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TTATTCAAAAGATTTTGGTGG	0.343			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			12	22					2.80697e-09	3.01096e-09	1	1	0	
NHP2	55651	broad.mit.edu	37	5	177580513	177580513	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:177580513A>C	uc003mir.2	-	2	352	c.209T>G	c.(208-210)TTT>TGT	p.F70C	NHP2_uc003mis.2_Missense_Mutation_p.F70C	NM_017838	NP_060308	Q9NX24	NHP2_HUMAN	nucleolar protein family A, member 2 isoform a	70					rRNA pseudouridine synthesis	Cajal body|nucleolus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding				0						TTTGTTGACAAATTTCTGAAC	0.512													62	125					0	0	1	0	0	
COL23A1	91522	broad.mit.edu	37	5	177681965	177681965	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:177681965G>T	uc003mje.2	-	16	1303	c.945C>A	c.(943-945)ATC>ATA	p.I315I	COL23A1_uc010jkt.2_Silent_p.I197I	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	315	Extracellular (Potential).|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		GGGCATCCAAGATCCTGCCAT	0.488													77	163					2.26256e-52	2.81814e-52	1	1	0	
ZNF354A	6940	broad.mit.edu	37	5	178139758	178139758	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178139758C>A	uc003mjj.2	-	5	1319	c.1121G>T	c.(1120-1122)AGA>ATA	p.R374I		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	374	C2H2-type 5.				regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		AGTGTGAATTCTCTGATGATA	0.403													34	75					1.62957e-23	1.95196e-23	1	1	0	
ZNF354A	6940	broad.mit.edu	37	5	178152396	178152396	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178152396A>G	uc003mjj.2	-	4	435	c.237T>C	c.(235-237)GGT>GGC	p.G79G		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	79	KRAB.				regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		AGACGCCAGAACCGTCTTTCT	0.517													40	130					0	0	1	0	0	
AACSL	729522	broad.mit.edu	37	5	178194260	178194260	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178194260G>A	uc011dgk.1	-	6		c.731C>T			AACSL_uc011dgl.1_RNA|AACSL_uc003mjk.2_RNA	NR_024035				Homo sapiens acetoacetyl-CoA synthetase-like, mRNA (cDNA clone IMAGE:3945810), partial cds.												0						GTTCGAGAAAGCACCTCGTTG	0.527													5	12					0	0	1	0	0	
AACSL	729522	broad.mit.edu	37	5	178202321	178202321	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178202321G>A	uc011dgk.1	-	2		c.152C>T			AACSL_uc011dgl.1_RNA|AACSL_uc003mjk.2_RNA	NR_024035				Homo sapiens acetoacetyl-CoA synthetase-like, mRNA (cDNA clone IMAGE:3945810), partial cds.												0						TGCAGCAGTCGCCATGAGCCC	0.657													4	3					0	0	1	0	0	
ZNF354B	117608	broad.mit.edu	37	5	178309931	178309931	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178309931A>C	uc003mjl.2	+	5	704	c.478A>C	c.(478-480)AAT>CAT	p.N160H	ZNF354B_uc003mjm.2_Missense_Mutation_p.N160H	NM_058230	NP_478137	Q96LW1	Z354B_HUMAN	zinc finger protein 354B	160					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAGCCATAAAAATGTTGAATT	0.294													21	43					0	0	1	0	0	
ZNF454	285676	broad.mit.edu	37	5	178373364	178373364	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178373364C>T	uc003mjo.1	+	3	309	c.38C>T	c.(37-39)TCG>TTG	p.S13L	ZNF454_uc010jkz.1_Missense_Mutation_p.S13L|ZNF454_uc003mjp.2_Silent_p.I48I	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	13					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		TTGCAGGAATCGGTGACCTTC	0.567													37	69					0	0	1	0	0	
ZNF454	285676	broad.mit.edu	37	5	178392029	178392029	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178392029A>C	uc003mjo.1	+	5	895	c.624A>C	c.(622-624)AAA>AAC	p.K208N	ZNF454_uc010jkz.1_Missense_Mutation_p.K208N	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	208					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		CAAATCAGAAAATTCATATTA	0.348													39	47					0	0	1	0	0	
ZNF454	285676	broad.mit.edu	37	5	178392784	178392784	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178392784G>T	uc003mjo.1	+	5	1650	c.1379G>T	c.(1378-1380)AGA>ATA	p.R460I	ZNF454_uc010jkz.1_Missense_Mutation_p.R460I	NM_182594	NP_872400	Q8N9F8	ZN454_HUMAN	zinc finger protein 454	460	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(89;0.000904)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.225)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.234)		CAACATAAGAGAATTCATACT	0.403													45	104					1.23103e-26	1.49092e-26	1	1	0	
ZNF879	345462	broad.mit.edu	37	5	178460208	178460208	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178460208G>T	uc003mjt.3	+	5	1424	c.1259G>T	c.(1258-1260)AGA>ATA	p.R420I		NM_001136116	NP_001129588	B4DU55	ZN879_HUMAN	zinc finger protein 879	420	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CAACATCAAAGAATTCACACT	0.403													7	15					0.27861	0.278883	1	1	0	
ZNF879	345462	broad.mit.edu	37	5	178460260	178460260	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178460260C>T	uc003mjt.3	+	5	1476	c.1311C>T	c.(1309-1311)TTC>TTT	p.F437F		NM_001136116	NP_001129588	B4DU55	ZN879_HUMAN	zinc finger protein 879	437	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						GGAAAGCCTTCTCTTGGATTT	0.413													5	10					0	0	1	0	0	
ZNF354C	30832	broad.mit.edu	37	5	178505734	178505734	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178505734T>G	uc003mju.2	+	5	416	c.301T>G	c.(301-303)TTT>GTT	p.F101V		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	101					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		ACAGGACATTTTTATAGAAGA	0.383													31	50					0	0	1	0	0	
ZNF354C	30832	broad.mit.edu	37	5	178506881	178506881	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178506881T>G	uc003mju.2	+	5	1563	c.1448T>G	c.(1447-1449)TTA>TGA	p.L483*		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	483	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		TATTCATTTTTAACCGAACAT	0.393													41	61					0	0	1	0	0	
ADAMTS2	9509	broad.mit.edu	37	5	178541025	178541025	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178541025G>A	uc003mjw.2	-	22	3479	c.3479C>T	c.(3478-3480)GCC>GTC	p.A1160V	uc003mjv.3_5'Flank	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1160					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TTCATCTACGGCATTGGTTTC	0.552													49	86					0	0	1	0	0	
ADAMTS2	9509	broad.mit.edu	37	5	178557056	178557056	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178557056C>A	uc003mjw.2	-	16	2334	c.2334G>T	c.(2332-2334)GAG>GAT	p.E778D		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	778	Spacer.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CCACGTCATTCTCTTCATTTA	0.577													23	48					1.96895e-08	2.09068e-08	1	1	0	
ADAMTS2	9509	broad.mit.edu	37	5	178770784	178770784	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:178770784C>T	uc003mjw.2	-	2	518	c.518G>A	c.(517-519)AGC>AAC	p.S173N	ADAMTS2_uc011dgm.1_Missense_Mutation_p.S173N	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	173					collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		ATCGCAGTTGCTGAGCGCCAC	0.637													7	11					0	0	1	0	0	
MAML1	9794	broad.mit.edu	37	5	179195995	179195995	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:179195995T>C	uc003mkm.2	+	3	2139	c.1876T>C	c.(1876-1878)TTG>CTG	p.L626L	MAML1_uc003mkn.1_Silent_p.L626L	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	626					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCAGCATCAGTTGCTTTTGGA	0.552													52	103					0	0	1	0	0	
TBC1D9B	23061	broad.mit.edu	37	5	179302018	179302018	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:179302018G>A	uc003mlh.2	-	12	2107	c.2070C>T	c.(2068-2070)TGC>TGT	p.C690C	TBC1D9B_uc003mli.2_Silent_p.C690C|TBC1D9B_uc003mlj.2_Silent_p.C690C|TBC1D9B_uc011dgv.1_5'Flank	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	690	Rab-GAP TBC.					integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CATAGAAAAAGCAGTCGACGA	0.627													25	55					0	0	1	0	0	
RASGEF1C	255426	broad.mit.edu	37	5	179529139	179529139	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:179529139A>C	uc003mlq.2	-	12	1605	c.1308T>G	c.(1306-1308)CTT>CTG	p.L436L	RASGEF1C_uc003mlr.2_Silent_p.L436L|RASGEF1C_uc003mlp.3_Silent_p.L285L	NM_175062	NP_778232	Q8N431	RGF1C_HUMAN	RasGEF domain family, member 1C	436	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(89;3.44e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0242)|Medulloblastoma(196;0.00498)|all_neural(177;0.0137)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAGCCAAATAAAGACCTAGAC	0.363													22	36					0	0	1	0	0	
GFPT2	9945	broad.mit.edu	37	5	179743815	179743815	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:179743815G>A	uc003mlw.1	-	12	1199	c.1101C>T	c.(1099-1101)TGC>TGT	p.C367C		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	367	SIS 1.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	TGAGCCGTCGGCATCGTCGAA	0.577													23	37					0	0	1	0	0	
CNOT6	57472	broad.mit.edu	37	5	179994129	179994129	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:179994129G>A	uc003mlx.2	+	8	1108	c.759G>A	c.(757-759)GAG>GAA	p.E253E	CNOT6_uc010jld.2_Silent_p.E253E|CNOT6_uc010jle.2_Silent_p.E248E	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	253					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		TTCTGGTAGAGCTGAAAGAAC	0.363													37	66					0	0	1	0	0	
FLT4	2324	broad.mit.edu	37	5	180057603	180057603	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr5:180057603C>A	uc003mma.3	-	3	431	c.352G>T	c.(352-354)GCA>TCA	p.A118S	FLT4_uc003mlz.3_Missense_Mutation_p.A118S|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Missense_Mutation_p.A118S|FLT4_uc011dgz.1_Missense_Mutation_p.A118S|FLT4_uc011dha.1_Missense_Mutation_p.A118S	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	118	Ig-like C2-type 1.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCGATGCGTGCCTTGATGTAC	0.642									Congenital_Hereditary_Lymphedema				21	39					8.10497e-08	8.54627e-08	1	1	0	
IRF4	3662	broad.mit.edu	37	6	393249	393249	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:393249G>A	uc003msz.3	+	2	210	c.97G>A	c.(97-99)GAC>AAC	p.D33N	IRF4_uc010jne.1_Missense_Mutation_p.D33N|IRF4_uc003mta.3_RNA|IRF4_uc003mtb.3_Missense_Mutation_p.D33N	NM_002460	NP_002451	Q15306	IRF4_HUMAN	interferon regulatory factor 4	33	IRF tryptophan pentad repeat.				interferon-gamma-mediated signaling pathway|positive regulation of interleukin-10 biosynthetic process|positive regulation of interleukin-13 biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of transcription, DNA-dependent|regulation of T-helper cell differentiation|T cell activation|type I interferon-mediated signaling pathway	cytoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(1)	1		Breast(5;0.0155)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.03)|BRCA - Breast invasive adenocarcinoma(62;0.0702)		CGACCAGATCGACAGCGGCAA	0.662			T	IGH@	MM 								3	10					0	0	1	0	0	
EXOC2	55770	broad.mit.edu	37	6	598085	598085	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:598085C>A	uc003mtd.2	-	10	1143	c.1009G>T	c.(1009-1011)GAA>TAA	p.E337*	EXOC2_uc003mte.2_Nonsense_Mutation_p.E337*|EXOC2_uc011dho.1_Intron	NM_018303	NP_060773	Q96KP1	EXOC2_HUMAN	Sec5 protein	337					exocytosis|protein transport					breast(4)|ovary(2)|pancreas(1)	7	Ovarian(93;0.0733)	Breast(5;0.0014)|all_lung(73;0.0697)|all_hematologic(90;0.0897)		OV - Ovarian serous cystadenocarcinoma(45;0.0507)|BRCA - Breast invasive adenocarcinoma(62;0.14)		AGAAGTAATTCTCTTAAAGCT	0.274													12	29					0.105934	0.10631	1	1	0	
EXOC2	55770	broad.mit.edu	37	6	637805	637805	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:637805C>T	uc003mtd.2	-	2	148	c.14G>A	c.(13-15)CGA>CAA	p.R5Q	EXOC2_uc003mte.2_Missense_Mutation_p.R5Q|EXOC2_uc011dho.1_Intron	NM_018303	NP_060773	Q96KP1	EXOC2_HUMAN	Sec5 protein	5					exocytosis|protein transport					breast(4)|ovary(2)|pancreas(1)	7	Ovarian(93;0.0733)	Breast(5;0.0014)|all_lung(73;0.0697)|all_hematologic(90;0.0897)		OV - Ovarian serous cystadenocarcinoma(45;0.0507)|BRCA - Breast invasive adenocarcinoma(62;0.14)		GGGGGGTTGTCGTGATCGAGA	0.478													31	99					0	0	1	0	0	
FOXC1	2296	broad.mit.edu	37	6	1610914	1610914	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:1610914G>T	uc003mtp.2	+	1	234	c.234G>T	c.(232-234)AAG>AAT	p.K78N		NM_001453	NP_001444	Q12948	FOXC1_HUMAN	forkhead box C1	78	Fork-head.				anti-apoptosis|artery morphogenesis|blood vessel remodeling|brain development|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|germ cell migration|glycosaminoglycan metabolic process|lacrimal gland development|lymphangiogenesis|metanephros development|negative regulation of mitotic cell cycle|neural crest cell fate commitment|Notch signaling pathway|odontogenesis of dentine-containing tooth|ossification|ovarian follicle development|paraxial mesodermal cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|ureteric bud development|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	nuclear heterochromatin|transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1	Ovarian(93;0.0733)	all_cancers(2;4.45e-07)|all_epithelial(2;4.33e-05)|all_lung(73;0.0713)|all_hematologic(90;0.0895)		Epithelial(2;0.0904)|OV - Ovarian serous cystadenocarcinoma(45;0.095)|all cancers(2;0.168)		ACATGGTGAAGCCGCCCTATA	0.647													31	51					1.88708e-17	2.18811e-17	1	1	0	
MYLK4	340156	broad.mit.edu	37	6	2671570	2671570	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:2671570G>A	uc003mty.3	-	12	1429	c.1132C>T	c.(1132-1134)CGT>TGT	p.R378C	MYLK4_uc003mtx.3_Missense_Mutation_p.R93C	NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	378							ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				TCAGAGCCACGATTCTTCTTC	0.473													9	41					0	0	1	0	0	
WRNIP1	56897	broad.mit.edu	37	6	2770510	2770510	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:2770510C>T	uc003mtz.2	+	3	1362	c.1171C>T	c.(1171-1173)CGA>TGA	p.R391*	WRNIP1_uc003mua.2_Nonsense_Mutation_p.R366*	NM_020135	NP_064520	Q96S55	WRIP1_HUMAN	Werner helicase interacting protein isoform 1	391					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA-dependent DNA replication initiation	mitochondrion|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|DNA binding|metal ion binding|protein binding			ovary(1)|pancreas(1)	2	Ovarian(93;0.0412)	all_hematologic(90;0.0895)				TATTTTAATGCGAGCGATCAA	0.517													47	66					0	0	1	0	0	
SERPINB6	5269	broad.mit.edu	37	6	2948628	2948628	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:2948628G>A	uc003muk.2	-	6	3030	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	SERPINB6_uc003mui.2_Silent_p.F228F|SERPINB6_uc003muj.2_RNA|SERPINB6_uc003mul.2_Silent_p.F345F|SERPINB6_uc003mum.2_Silent_p.F345F|SERPINB6_uc003mun.2_Silent_p.F345F|SERPINB6_uc003muo.2_Silent_p.F345F	NM_004568	NP_004559	P35237	SPB6_HUMAN	serine (or cysteine) proteinase inhibitor, clade	345					regulation of proteolysis	centrosome|cytosol|protein complex	protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)			Drotrecogin alfa(DB00055)	AGCGGGGGACGAATCTGGCAC	0.582													23	57					0	0	1	0	0	
C6orf146	222826	broad.mit.edu	37	6	4069760	4069760	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:4069760T>G	uc003mvx.2	-	7	1037	c.697A>C	c.(697-699)AAT>CAT	p.N233H	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Missense_Mutation_p.N170H	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	233										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TCCTCAACATTTTTTATTGTT	0.378													10	118					0	0	1	0	0	
CDYL	9425	broad.mit.edu	37	6	4954278	4954278	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:4954278C>T	uc003mwi.2	+	9	1916	c.1785C>T	c.(1783-1785)ATC>ATT	p.I595I	CDYL_uc003mwj.2_Silent_p.I541I|CDYL_uc003mwk.2_Silent_p.I306I|CDYL_uc011dhx.1_Silent_p.I409I|CDYL_uc011dhy.1_Silent_p.I409I	NM_001143971	NP_001137443	Q9Y232	CDYL1_HUMAN	chromodomain protein, Y chromosome-like isoform	595					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	histone acetyltransferase activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0901)|Lung NSC(90;0.244)		OV - Ovarian serous cystadenocarcinoma(45;0.182)		AGAGGAAGATCGATGAGTTCT	0.577													7	35					0	0	1	0	0	
F13A1	2162	broad.mit.edu	37	6	6167838	6167838	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:6167838C>T	uc003mwv.2	-	13	1884	c.1761G>A	c.(1759-1761)GCG>GCA	p.A587A	F13A1_uc011dib.1_Silent_p.A524A	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	587					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GGATCAGCACCGCCTCTTTCT	0.527													11	31					0	0	1	0	0	
F13A1	2162	broad.mit.edu	37	6	6225075	6225075	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:6225075C>T	uc003mwv.2	-	7	940	c.817G>A	c.(817-819)GAA>AAA	p.E273K	F13A1_uc011dib.1_Missense_Mutation_p.E210K	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	273					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	AGGACACCTTCGTCATCTTTG	0.498													30	70					0	0	1	0	0	
CAGE1	285782	broad.mit.edu	37	6	7373574	7373574	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:7373574T>G	uc003mxi.2	-	4	1791	c.1070A>C	c.(1069-1071)AAA>ACA	p.K357T	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.K248T|CAGE1_uc003mxk.1_Missense_Mutation_p.K248T	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	493	Potential.										0	Ovarian(93;0.0418)					CTTTTCAAGTTTCTGGAATTC	0.378													9	27					0	0	1	0	0	
RIOK1	83732	broad.mit.edu	37	6	7405486	7405486	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:7405486C>A	uc003mxn.2	+	12	1275	c.1101C>A	c.(1099-1101)TTC>TTA	p.F367L	RIOK1_uc003mxo.2_Missense_Mutation_p.F126L	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	367	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					TGACAGATTTCTTTATGAGGC	0.363													17	37					4.75885e-15	5.40475e-15	1	1	0	
RIOK1	83732	broad.mit.edu	37	6	7411600	7411600	+	Silent	SNP	T	C	C	rs138618030		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:7411600T>C	uc003mxn.2	+	14	1479	c.1305T>C	c.(1303-1305)AAT>AAC	p.N435N	RIOK1_uc003mxo.2_Silent_p.N194N	NM_031480	NP_113668	Q9BRS2	RIOK1_HUMAN	RIO kinase 1 isoform 1	435	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|skin(1)	4	Ovarian(93;0.0418)					GAACCTTGAATGAAGTGAAAA	0.358													37	64					0	0	1	0	0	
DSP	1832	broad.mit.edu	37	6	7575554	7575554	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:7575554G>T	uc003mxp.1	+	18	2742	c.2463G>T	c.(2461-2463)AAG>AAT	p.K821N	DSP_uc003mxq.1_Missense_Mutation_p.K821N	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	821	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TGAACTTGAAGAAGTCGTTGT	0.388													38	89					3.33393e-15	3.79275e-15	1	1	0	
DSP	1832	broad.mit.edu	37	6	7584004	7584004	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:7584004A>C	uc003mxp.1	+	24	6788	c.6509A>C	c.(6508-6510)AAA>ACA	p.K2170T	DSP_uc003mxq.1_Missense_Mutation_p.K1571T	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2170	Plectin 5.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GATAGTCAGAAAAACTTTGTG	0.473													32	72					0	0	1	0	0	
PIP5K1P1	206426	broad.mit.edu	37	6	7987010	7987010	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:7987010A>G	uc003mxx.3	+	1	676	c.241A>G	c.(241-243)ACT>GCT	p.T81A	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						GTTAGGCATTACTTACACTGT	0.478													23	56					0	0	1	0	0	
GCM2	9247	broad.mit.edu	37	6	10876691	10876691	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:10876691G>A	uc003mzn.3	-	3	515	c.443C>T	c.(442-444)GCG>GTG	p.A148V	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	148	GCM.				cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				AAAAAAGATCGCGTTGCCATC	0.498													18	36					0	0	1	0	0	
ERVFRDE1	405754	broad.mit.edu	37	6	11104843	11104843	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:11104843C>T	uc003mzt.2	-	2	1071	c.701G>A	c.(700-702)CGA>CAA	p.R234Q	LOC221710_uc003mzr.2_Intron|LOC221710_uc011dio.1_Intron	NM_207582	NP_997465	P60508	EFRD1_HUMAN	syncytin 2	234	Extracellular (Potential).					integral to membrane|plasma membrane|virion					0						aagagaatttcgagttTGGTC	0.219													16	40					0	0	1	0	0	
HIVEP1	3096	broad.mit.edu	37	6	12120209	12120209	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:12120209A>C	uc003nac.2	+	4	360	c.181A>C	c.(181-183)AAA>CAA	p.K61Q	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	61					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				TCACCTGAAAAAAATACCAAA	0.398													53	101					0	0	1	0	0	
HIVEP1	3096	broad.mit.edu	37	6	12120319	12120319	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:12120319G>T	uc003nac.2	+	4	470	c.291G>T	c.(289-291)CAG>CAT	p.Q97H	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	97					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				ACAAGAAACAGAATTATATTC	0.388													50	84					1.0442e-30	1.27806e-30	1	1	0	
HIVEP1	3096	broad.mit.edu	37	6	12121176	12121176	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:12121176T>G	uc003nac.2	+	4	1327	c.1148T>G	c.(1147-1149)GTT>GGT	p.V383G	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	383					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GCCTCTGTTGTTAATCAAAGC	0.393													86	159					0	0	1	0	0	
HIVEP1	3096	broad.mit.edu	37	6	12122667	12122667	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:12122667T>C	uc003nac.2	+	4	2818	c.2639T>C	c.(2638-2640)GTA>GCA	p.V880A	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	880					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GATGTCTTTGTATCGGGACCT	0.443													49	98					0	0	1	0	0	
JARID2	3720	broad.mit.edu	37	6	15501389	15501389	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:15501389C>T	uc003nbj.2	+	8	2441	c.2197C>T	c.(2197-2199)CGC>TGC	p.R733C	JARID2_uc011div.1_Missense_Mutation_p.R561C|JARID2_uc011diw.1_Missense_Mutation_p.R695C	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	733					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				CCTGGAGAAGCGCAAGGGGCC	0.637													44	114					0	0	1	0	0	
GMPR	2766	broad.mit.edu	37	6	16274705	16274705	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:16274705C>A	uc003nbs.2	+	5	639	c.525C>A	c.(523-525)ATC>ATA	p.I175I		NM_006877	NP_006868	P36959	GMPR1_HUMAN	guanosine monophosphate reductase	175					nucleotide metabolic process|purine base metabolic process|purine-containing compound salvage|response to cold	cytosol	GMP reductase activity|metal ion binding			ovary(1)	1	Breast(50;0.0427)|Ovarian(93;0.103)	all_hematologic(90;0.0895)				GAGCAGATATCATCAAAGTGG	0.493													17	38					9.16793e-09	9.77785e-09	1	1	0	
NUP153	9972	broad.mit.edu	37	6	17648090	17648090	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:17648090A>C	uc003ncd.1	-	13	1780	c.1580T>G	c.(1579-1581)TTT>TGT	p.F527C	NUP153_uc011dje.1_Missense_Mutation_p.F558C|NUP153_uc010jpl.1_Missense_Mutation_p.F527C	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	527					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			TGGAGATGAAAATTTAAACAT	0.338													49	96					0	0	1	0	0	
DEK	7913	broad.mit.edu	37	6	18256686	18256686	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:18256686C>T	uc003ncr.1	-	5	551	c.358G>A	c.(358-360)GTG>ATG	p.V120M	DEK_uc011djf.1_Missense_Mutation_p.V86M|DEK_uc011djg.1_RNA	NM_003472	NP_003463	P35659	DEK_HUMAN	DEK oncogene isoform 1	120					chromatin modification|regulation of transcription from RNA polymerase II promoter|signal transduction|transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|histone binding			kidney(1)	1	Ovarian(93;0.00769)|Breast(50;0.0495)	all_hematologic(90;0.053)	OV - Ovarian serous cystadenocarcinoma(7;0.00291)|all cancers(50;0.031)|Epithelial(50;0.0332)			AATGAGGACACCTGAAAATGT	0.308			T	NUP214	AML								17	35					0	0	1	0	0	
MIR548A1	693125	broad.mit.edu	37	6	18572108	18572108	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:18572108T>C	hsa-mir-548a-1|MI0003593	+			c.94T>C			uc003nct.1_Intron																	0						ccaaACCTGGTATTTTTGATC	0.259													31	52					0	0	1	0	0	
MBOAT1	154141	broad.mit.edu	37	6	20118675	20118675	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:20118675T>G	uc003ncx.1	-	9	1209	c.1004A>C	c.(1003-1005)AAA>ACA	p.K335T	MBOAT1_uc011dji.1_Missense_Mutation_p.K186T	NM_001080480	NP_001073949	Q6ZNC8	MBOA1_HUMAN	membrane bound O-acyltransferase domain	335					phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(95;0.244)|Breast(50;0.0379)|Ovarian(93;0.0473)|all_epithelial(95;0.109)		OV - Ovarian serous cystadenocarcinoma(7;0.00392)|all cancers(50;0.0117)|Epithelial(50;0.0454)			CACCTCAATTTTCCAGATGTT	0.423													5	63					0	0	1	0	0	
E2F3	1871	broad.mit.edu	37	6	20480168	20480168	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:20480168G>A	uc003nda.2	+	2	812	c.485G>A	c.(484-486)CGA>CAA	p.R162Q	E2F3_uc003ncz.2_Missense_Mutation_p.R162Q	NM_001949	NP_001940	O00716	E2F3_HUMAN	E2F transcription factor 3	162	Potential.				G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(95;0.154)|all_epithelial(95;0.0585)|Breast(50;0.146)|Ovarian(93;0.148)		OV - Ovarian serous cystadenocarcinoma(7;0.0068)|all cancers(50;0.0148)|Epithelial(50;0.0562)			GCTGCACTACGAAGTCCAGAT	0.453													11	20					0	0	1	0	0	
E2F3	1871	broad.mit.edu	37	6	20483077	20483077	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:20483077G>A	uc003nda.2	+	4	1137	c.810G>A	c.(808-810)GAG>GAA	p.E270E	E2F3_uc003ncz.2_Silent_p.E264E	NM_001949	NP_001940	O00716	E2F3_HUMAN	E2F transcription factor 3	270	Dimerization (Potential).				G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(95;0.154)|all_epithelial(95;0.0585)|Breast(50;0.146)|Ovarian(93;0.148)		OV - Ovarian serous cystadenocarcinoma(7;0.0068)|all cancers(50;0.0148)|Epithelial(50;0.0562)			GTCAGGAAGAGAAGAAATTAG	0.502													20	63					0	0	1	0	0	
NRSN1	140767	broad.mit.edu	37	6	24145834	24145834	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:24145834G>A	uc010jpq.1	+	4	485	c.248G>A	c.(247-249)GGC>GAC	p.G83D		NM_080723	NP_542454	Q8IZ57	NRSN1_HUMAN	neurensin 1	83	Helical; (Potential).				nervous system development	growth cone|integral to membrane|neuronal cell body|transport vesicle					0						CTGGCAGTGGGCTTTCTTGTG	0.478													47	79					0	0	1	0	0	
GPLD1	2822	broad.mit.edu	37	6	24489651	24489651	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:24489651A>G	uc003ned.1	-	1	200	c.89T>C	c.(88-90)GTA>GCA	p.V30A	GPLD1_uc010jps.1_Missense_Mutation_p.V30A|GPLD1_uc003nee.2_Missense_Mutation_p.V30A	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	30						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						ACCTATTTCTACGTGTGTTGA	0.458													23	46					0	0	1	0	0	
KIAA0319	9856	broad.mit.edu	37	6	24596714	24596714	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:24596714T>C	uc011djo.1	-	3	425	c.188A>G	c.(187-189)GAC>GGC	p.D63G	KIAA0319_uc011djp.1_Missense_Mutation_p.D18G|KIAA0319_uc003neh.1_Missense_Mutation_p.D63G|KIAA0319_uc011djq.1_Missense_Mutation_p.D54G|KIAA0319_uc011djr.1_Missense_Mutation_p.D63G	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	63	MANSC.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GCTGGACAGGTCACAGCAAGC	0.567													24	50					0	0	1	0	0	
GMNN	51053	broad.mit.edu	37	6	24784681	24784681	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:24784681G>T	uc003nem.2	+	6	574	c.367G>T	c.(367-369)GAA>TAA	p.E123*	GMNN_uc003nen.2_Nonsense_Mutation_p.E123*	NM_015895	NP_056979	O75496	GEMI_HUMAN	geminin	123	|Necessary and sufficient for interaction with IDAS.				M/G1 transition of mitotic cell cycle|negative regulation of cell cycle|negative regulation of DNA replication|negative regulation of transcription, DNA-dependent	cytosol|nucleoplasm	histone deacetylase binding			ovary(1)	1						GCTTCATAAAGAAATTGAACA	0.338													10	46					4.68919e-08	4.95982e-08	1	1	0	
SCGN	10590	broad.mit.edu	37	6	25682209	25682209	+	Missense_Mutation	SNP	C	T	T	rs148850055	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:25682209C>T	uc003nfb.2	+	7	705	c.502C>T	c.(502-504)CGG>TGG	p.R168W	SCGN_uc010jpz.2_Intron	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	168	4 (Potential).|EF-hand 4.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						TAAAGATGGTCGGTTGGATCT	0.338													13	47					0	0	1	0	0	
HFE	3077	broad.mit.edu	37	6	26092943	26092943	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:26092943T>C	uc003nfx.1	+	4	807	c.647T>C	c.(646-648)GTG>GCG	p.V216A	HFE_uc003nfy.1_Missense_Mutation_p.V193A|HFE_uc010jqe.1_Intron|HFE_uc003nfz.1_Missense_Mutation_p.V128A|HFE_uc003ngd.1_Intron|HFE_uc003nga.1_Intron|HFE_uc003ngb.1_Intron|HFE_uc003ngc.1_Missense_Mutation_p.V124A|HFE_uc003nge.1_Missense_Mutation_p.V36A|HFE_uc003ngf.1_Intron	NM_000410	NP_000401	Q30201	HFE_HUMAN	hemochromatosis protein isoform 1 precursor	216	Alpha-3.|Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation of peptide antigen via MHC class I|cellular iron ion homeostasis|immune response|iron ion transport|protein complex assembly|receptor-mediated endocytosis	apical part of cell|basal part of cell|cytoplasmic vesicle|early endosome|integral to plasma membrane|MHC class I protein complex|perinuclear region of cytoplasm|recycling endosome	protein binding				0						ACACATCATGTGACCTCTTCA	0.512									Hemochromatosis				56	118					0	0	1	0	0	
HIST1H1E	3008	broad.mit.edu	37	6	26157150	26157150	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:26157150G>A	uc003ngq.2	+	1	592	c.532G>A	c.(532-534)GCA>ACA	p.A178T	HIST1H2BD_uc003ngr.2_5'Flank|HIST1H2BD_uc003ngs.2_5'Flank	NM_005321	NP_005312	P10412	H14_HUMAN	histone cluster 1, H1e	178					nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			large_intestine(1)|ovary(1)	2						AAAGGCGAAAGCAGCCAAGCC	0.582													8	18					0	0	1	0	0	
HIST1H3F	8968	broad.mit.edu	37	6	26250748	26250748	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:26250748C>A	uc003nhg.1	-	1	88	c.86G>T	c.(85-87)AGC>ATC	p.S29I	HIST1H2BH_uc003nhh.2_5'Flank	NM_021018	NP_066298	P68431	H31_HUMAN	histone cluster 1, H3f	29					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0						GGCTGGCGCGCTTTTGCGAGC	0.607													30	87					3.73148e-12	4.12027e-12	1	1	0	
BTN3A2	11118	broad.mit.edu	37	6	26373510	26373510	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:26373510T>C	uc010jqh.1	+	7	1182	c.923T>C	c.(922-924)CTC>CCC	p.L308P	BTN3A2_uc003nho.1_Missense_Mutation_p.L306P|BTN3A2_uc003nhp.2_Missense_Mutation_p.L308P|BTN3A2_uc011dkd.1_Missense_Mutation_p.L266P|BTN3A2_uc011dke.1_Missense_Mutation_p.L285P|BTN3A2_uc010jqi.1_Missense_Mutation_p.L306P	NM_007047	NP_008978	P78410	BT3A2_HUMAN	butyrophilin, subfamily 3, member A2 precursor	308	Cytoplasmic (Potential).|Potential.					integral to membrane					0						CCAGAGAGCCTCCAGGAGGAA	0.398													11	96					0	0	1	0	0	
ZSCAN16	80345	broad.mit.edu	37	6	28097700	28097700	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:28097700G>T	uc003nkm.2	+	4	1119	c.1019G>T	c.(1018-1020)AGA>ATA	p.R340I	uc010jqw.1_Intron|uc003nkk.1_Intron|uc003nkl.1_Intron	NM_025231	NP_079507	Q9H4T2	ZSC16_HUMAN	zinc finger and SCAN domain containing 16	340	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)	1						AGACATCAAAGAATTCATACC	0.363													15	30					1.3612e-06	1.41942e-06	1	1	0	
ZNF323	64288	broad.mit.edu	37	6	28297521	28297521	+	Translation_Start_Site	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:28297521A>C	uc003nla.2	-	2	340	c.-60T>G	c.(-62--58)ATTTT>ATGTT		ZNF323_uc003nld.2_Intron|ZNF323_uc010jra.2_Intron|ZNF323_uc003nlb.2_Intron|ZNF323_uc010jrb.2_Intron|ZNF323_uc003nlc.2_Translation_Start_Site	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323						viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TGTGATTTAAAATTTTCTGAT	0.338													19	37					0	0	1	0	0	
GPX5	2880	broad.mit.edu	37	6	28499606	28499606	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:28499606G>A	uc003nll.2	+	3	295	c.293G>A	c.(292-294)GGC>GAC	p.G98D	GPX5_uc003nlm.2_Intron|GPX5_uc003nln.2_Intron	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	98					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	GTTGTGTTGGGCTTTCCCTGC	0.473													92	179					0	0	1	0	0	
SCAND3	114821	broad.mit.edu	37	6	28540442	28540442	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:28540442C>T	uc003nlo.2	-	4	3842	c.3224G>A	c.(3223-3225)CGA>CAA	p.R1075Q		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1075					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						gagttcatttcgtatttcaaa	0													33	68					0	0	1	0	0	
SCAND3	114821	broad.mit.edu	37	6	28541080	28541080	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:28541080C>A	uc003nlo.2	-	4	3204	c.2586G>T	c.(2584-2586)AAG>AAT	p.K862N		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	862					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						gagctaccttctttgctgcag	0													61	107					8.13277e-46	1.01083e-45	1	1	0	
SCAND3	114821	broad.mit.edu	37	6	28541478	28541478	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:28541478G>T	uc003nlo.2	-	4	2806	c.2188C>A	c.(2188-2190)CAT>AAT	p.H730N		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	730					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						aaactagcatgaactcttttg	0													16	39					1.15088e-07	1.20949e-07	1	1	0	
OR11A1	26531	broad.mit.edu	37	6	29394947	29394947	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:29394947C>T	uc003nmg.2	-	1	563	c.472G>A	c.(472-474)GGA>AGA	p.G158R		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACAACCAGTCCATCTACCACA	0.567													33	37					0	0	1	0	0	
OR10C1	442194	broad.mit.edu	37	6	29408578	29408578	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:29408578G>A	uc011dlp.1	+	1	786	c.786G>A	c.(784-786)AAG>AAA	p.K262K	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCGCCCTAAGGCCAGCTACG	0.587													90	197					0	0	1	0	0	
MAS1L	116511	broad.mit.edu	37	6	29455512	29455512	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:29455512C>A	uc011dlq.1	-	1	168	c.168G>T	c.(166-168)ACG>ACT	p.T56T		NM_052967	NP_443199	P35410	MAS1L_HUMAN	MAS1 oncogene-like	56	Extracellular (Potential).					cytoplasm|integral to membrane|nucleus|plasma membrane	G-protein coupled receptor activity			ovary(7)|lung(2)	9						TGGTTTCATTCGTCTCATTTT	0.522													27	54					1.77063e-15	2.01907e-15	1	1	0	
OR2H2	7932	broad.mit.edu	37	6	29556646	29556646	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:29556646C>T	uc003nmr.1	+	1	964	c.925C>T	c.(925-927)CTC>TTC	p.L309F	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	309	Cytoplasmic (Potential).			MGLTQS -> RDSRESWRAA (in Ref. 1; AAB36567).	defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGAAATGGGGCTCACACAAAG	0.483													18	48					0	0	1	0	0	
TRIM10	10107	broad.mit.edu	37	6	30121843	30121843	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:30121843C>T	uc003npo.3	-	7	1425	c.1349G>A	c.(1348-1350)CGA>CAA	p.R450Q	TRIM10_uc003npn.2_Intron	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	450	B30.2/SPRY.					cytoplasm	zinc ion binding				0						GATGGGCTCTCGGGTGACAGC	0.597													28	54					0	0	1	0	0	
TRIM39	56658	broad.mit.edu	37	6	30314232	30314232	+	Missense_Mutation	SNP	G	A	A	rs148620646	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:30314232G>A	uc010jsa.1	+	9	1319	c.1312G>A	c.(1312-1314)GTA>ATA	p.V438I	RPP21_uc003nqd.1_Missense_Mutation_p.V112I|RPP21_uc003nqe.1_Missense_Mutation_p.V89I|RPP21_uc003nqf.1_Missense_Mutation_p.V89I	NM_172016	NP_742013	Q9HCM9	TRI39_HUMAN	tripartite motif-containing 39 isoform 2	Error:Variant_position_missing_in_Q9HCM9_after_alignment					apoptosis	cytosol|mitochondrion	identical protein binding|zinc ion binding			ovary(3)	3						GCGCTGGACCGTACAGACCTG	0.572													24	52					0	0	1	0	0	
HLA-E	3133	broad.mit.edu	37	6	30458020	30458020	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:30458020C>A	uc003nqg.2	+	3	376	c.338C>A	c.(337-339)TCT>TAT	p.S113Y	HLA-E_uc011dmg.1_Intron|HLA-E_uc011dmh.1_Missense_Mutation_p.S154Y	NM_005516	NP_005507	P13747	HLAE_HUMAN	major histocompatibility complex, class I, E	113	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			central_nervous_system(4)|ovary(1)	5						GGGCCAGGGTCTCACACCCTG	0.637													18	40					2.35188e-11	2.57851e-11	1	1	0	
PPP1R10	5514	broad.mit.edu	37	6	30577694	30577694	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:30577694C>A	uc003nqn.1	-	3	580	c.28G>T	c.(28-30)GAA>TAA	p.E10*	PPP1R10_uc010jsc.1_5'UTR	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	10	Interaction with TOX4 (By similarity).				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						TTGAGAAGTTCTTTGGGGTCT	0.478													27	50					4.87955e-14	5.4818e-14	1	1	0	
MDC1	9656	broad.mit.edu	37	6	30673264	30673264	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:30673264T>G	uc003nrg.3	-	10	4136	c.3696A>C	c.(3694-3696)AAA>AAC	p.K1232N	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Missense_Mutation_p.K839N	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1232	Pro-rich.|Interaction with the PRKDC complex.			Missing (in Ref. 2; CAH18685).	cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						AGGATCTATTTTTTCTTCCCC	0.572								Other_conserved_DNA_damage_response_genes					130	216					0	0	1	0	0	
DDR1	780	broad.mit.edu	37	6	30863249	30863249	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:30863249G>A	uc003nrr.2	+	13	1841	c.1582G>A	c.(1582-1584)GGC>AGC	p.G528S	DDR1_uc010jse.2_Intron|DDR1_uc003nrq.2_Intron|DDR1_uc003nrs.2_Missense_Mutation_p.G528S|DDR1_uc003nrt.2_Intron|DDR1_uc011dms.1_Intron|DDR1_uc003nru.2_Intron|DDR1_uc003nrv.2_Missense_Mutation_p.G528S|DDR1_uc003nrw.1_Silent_p.R299R|DDR1_uc003nry.1_Intron|DDR1_uc003nrx.1_Intron|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	528	Gly/Pro-rich.|Cytoplasmic (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	TCGAGGCCCGGGCCCCCCCAC	0.692													74	130					0	0	1	0	0	
VARS2	57176	broad.mit.edu	37	6	30884684	30884684	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:30884684G>A	uc003nsc.1	+	7	1333	c.701G>A	c.(700-702)CGA>CAA	p.R234Q	VARS2_uc003nsd.2_Missense_Mutation_p.R234Q|VARS2_uc011dmx.1_Missense_Mutation_p.R234Q|VARS2_uc011dmy.1_Missense_Mutation_p.R94Q|VARS2_uc011dmz.1_Missense_Mutation_p.R264Q|VARS2_uc011dna.1_Missense_Mutation_p.R234Q|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_5'Flank|VARS2_uc010jsg.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	234					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						GAGCAGCTGCGAGCTCTGGGT	0.428													49	81					0	0	1	0	0	
C2	717	broad.mit.edu	37	6	31901481	31901481	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:31901481G>A	uc003nyf.2	+	4	801	c.537G>A	c.(535-537)TCG>TCA	p.S179S	C2_uc003nyc.2_Missense_Mutation_p.R11Q|C2_uc011doo.1_Missense_Mutation_p.R11Q|C2_uc011dop.1_Silent_p.S56S|C2_uc003nye.3_Silent_p.S179S|C2_uc010jtk.2_Silent_p.S47S|C2_uc011doq.1_Silent_p.S150S|C2_uc003nyg.2_Silent_p.S47S|CFB_uc011dor.1_Silent_p.S117S	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	179	Sushi 3.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		GCTGCTCCTCGAATCTTGTGC	0.652													25	52					0	0	1	0	0	
TNXB	7148	broad.mit.edu	37	6	32036213	32036213	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:32036213G>A	uc003nzl.2	-	17	6376	c.6174C>T	c.(6172-6174)TTC>TTT	p.F2058F		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2140	Fibronectin type-III 13.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCCACCGTGGAAGCCGTACA	0.632													15	43					0	0	1	0	0	
TNXB	7148	broad.mit.edu	37	6	32047025	32047025	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:32047025G>A	uc003nzl.2	-	11	4362	c.4160C>T	c.(4159-4161)TCG>TTG	p.S1387L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1474	Fibronectin type-III 7.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GAGGCTCAGCGAATCAGGGGA	0.687													40	80					0	0	1	0	0	
TNXB	7148	broad.mit.edu	37	6	32065029	32065029	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:32065029G>A	uc003nzl.2	-	3	803	c.601C>T	c.(601-603)CGT>TGT	p.R201C		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	201	EGF-like 2.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CACACGCAACGACCACGGACA	0.657													7	15					0	0	1	0	0	
PPT2	9374	broad.mit.edu	37	6	32130710	32130710	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:32130710G>T	uc003nzx.2	+	9	1460	c.892G>T	c.(892-894)GAA>TAA	p.E298*	PPT2_uc003nzw.2_Nonsense_Mutation_p.E304*|PPT2_uc011dpi.1_Intron|PPT2_uc003nzy.1_Intron|PPT2_uc003nzz.2_Nonsense_Mutation_p.E298*|PPT2_uc003oaa.2_Nonsense_Mutation_p.E298*|PPT2_uc010jtu.1_Intron|EGFL8_uc003oac.1_5'Flank|EGFL8_uc003oab.1_5'Flank	NM_005155	NP_005146	Q9UMR5	PPT2_HUMAN	palmitoyl-protein thioesterase 2 isoform a	298					protein modification process	lysosome	palmitoyl-(protein) hydrolase activity				0						GACCTGCATTGAACCTTGGCT	0.562													77	173					8.6838e-40	1.07605e-39	1	1	0	
AGER	177	broad.mit.edu	37	6	32150740	32150740	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:32150740G>A	uc003oal.1	-	6	593	c.569C>T	c.(568-570)TCG>TTG	p.S190L	AGER_uc003oak.1_5'Flank|AGER_uc003oar.2_Missense_Mutation_p.S89L|AGER_uc011dpm.1_Missense_Mutation_p.S89L|AGER_uc011dpn.1_Missense_Mutation_p.S89L|AGER_uc010jtv.1_Missense_Mutation_p.S190L|AGER_uc011dpo.1_Missense_Mutation_p.S103L|AGER_uc003oam.1_Intron|AGER_uc003oan.1_Missense_Mutation_p.S176L|AGER_uc003oap.1_Missense_Mutation_p.S206L|AGER_uc003oat.1_Missense_Mutation_p.S206L|AGER_uc003oao.1_RNA|AGER_uc003oaq.1_Missense_Mutation_p.S176L|AGER_uc010jtw.1_RNA|AGER_uc003oas.1_Missense_Mutation_p.S190L|AGER_uc003oau.1_Missense_Mutation_p.S190L|AGER_uc011dpp.1_Missense_Mutation_p.S190L|AGER_uc011dpq.1_Missense_Mutation_p.S206L	NM_001136	NP_001127	Q15109	RAGE_HUMAN	advanced glycosylation end product-specific	190	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|inflammatory response|innate immune response|neuron projection development|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	S100 alpha binding|transmembrane receptor activity			breast(1)	1						CATTAGCTCCGACTGCAGTGT	0.597													31	53					0	0	1	0	0	
C6orf10	10665	broad.mit.edu	37	6	32307386	32307386	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:32307386C>A	uc011dpy.1	-	10	552	c.379G>T	c.(379-381)GAA>TAA	p.E127*	C6orf10_uc011dpz.1_Nonsense_Mutation_p.E111*	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	127						integral to membrane				skin(1)	1						CAAGGAGGTTCTTCAGTTGTT	0.214													43	126					5.57489e-27	6.76085e-27	1	1	0	
HLA-DMB	3109	broad.mit.edu	37	6	32905115	32905115	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:32905115G>A	uc003ocl.1	-	3	689	c.456C>T	c.(454-456)AAC>AAT	p.N152N	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_5'Flank|HLA-DMB_uc010jud.1_Silent_p.N21N|HLA-DMB_uc010jue.1_Silent_p.N21N|HLA-DMB_uc010juf.1_Silent_p.N21N|HLA-DMB_uc011dql.1_Silent_p.N152N	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	152	Lumenal (Potential).|Ig-like C1-type.|Beta-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						CAAGCTTCCCGTTCTTCCTCC	0.537													42	85					0	0	1	0	0	
HLA-DOA	3111	broad.mit.edu	37	6	32975854	32975854	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:32975854G>A	uc003ocr.2	-	2	343	c.267C>T	c.(265-267)ATC>ATT	p.I89I	HLA-DOA_uc010juj.2_Silent_p.I59I|HLA-DOA_uc010jui.2_Silent_p.I89I	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	89	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						TGATTGCGGCGATGCCGGCCA	0.642													16	42					0	0	1	0	0	
COL11A2	1302	broad.mit.edu	37	6	33132248	33132248	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:33132248G>T	uc003ocx.1	-	65	5094	c.4866C>A	c.(4864-4866)TTC>TTA	p.F1622L	COL11A2_uc010jul.1_Missense_Mutation_p.F192L|COL11A2_uc003ocy.1_Missense_Mutation_p.F1536L|COL11A2_uc003ocz.1_Missense_Mutation_p.F1515L	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1622	Fibrillar collagen NC1.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCACGTAAGAGAACTGGAAGG	0.642													3	3					0.004672	0.00471866	1	1	0	
RGL2	5863	broad.mit.edu	37	6	33260034	33260034	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:33260034C>T	uc003odv.2	-	18	2312	c.2179G>A	c.(2179-2181)GAT>AAT	p.D727N	RGL2_uc003odu.2_Missense_Mutation_p.D287N|RGL2_uc010jur.2_Missense_Mutation_p.D287N|RGL2_uc003odw.2_Missense_Mutation_p.D645N	NM_004761	NP_004752	O15211	RGL2_HUMAN	ral guanine nucleotide dissociation	727	Ras-associating.				Ras protein signal transduction|regulation of small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity			skin(3)|lung(1)|breast(1)|pancreas(1)	6						AGGAGGAAATCGTGTGAAGCT	0.577													26	68					0	0	1	0	0	
DAXX	1616	broad.mit.edu	37	6	33287518	33287518	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:33287518T>C	uc003oec.2	-	6	1783	c.1579A>G	c.(1579-1581)ATA>GTA	p.I527V	ZBTB22_uc003oeb.2_5'Flank|ZBTB22_uc010juu.2_5'Flank|DAXX_uc011drd.1_Missense_Mutation_p.I452V|DAXX_uc011dre.1_Missense_Mutation_p.I539V|DAXX_uc003oed.2_Missense_Mutation_p.I527V	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	527	Asp/Glu-rich (acidic).|Interaction with MAP3K5.|Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						GGTGACACTATGCGTCCTTTG	0.517			Mis|F|N		Pancreatic neuroendocrine tumors								37	71					0	0	1	0	0	
ZBTB9	221504	broad.mit.edu	37	6	33423510	33423510	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:33423510G>A	uc003oeq.2	+	2	901	c.633G>A	c.(631-633)GTG>GTA	p.V211V		NM_152735	NP_689948	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	211					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAATTCaggtggaagaagaag	0.438													35	69					0	0	1	0	0	
C6orf1	221491	broad.mit.edu	37	6	34214882	34214882	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:34214882T>C	uc003ojf.2	-	4	656	c.64A>G	c.(64-66)ACC>GCC	p.T22A	uc003oje.1_5'Flank|C6orf1_uc003ojg.2_Missense_Mutation_p.T22A|C6orf1_uc003ojh.2_Missense_Mutation_p.T22A|C6orf1_uc003oji.2_RNA	NM_178508	NP_848603	Q86T20	CF001_HUMAN	hypothetical protein LOC221491 precursor	22						extracellular region					0		Ovarian(999;0.0228)		BRCA - Breast invasive adenocarcinoma(397;1.11e-10)		CTCAGCTGGGTCATAGCTGTA	0.627													41	106					0	0	1	0	0	
UHRF1BP1	54887	broad.mit.edu	37	6	34802027	34802027	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:34802027G>A	uc003oju.3	+	5	606	c.372G>A	c.(370-372)GGG>GGA	p.G124G	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	124										ovary(3)	3						TGGTGGAAGGGATGTTCATCA	0.433													14	35					0	0	1	0	0	
UHRF1BP1	54887	broad.mit.edu	37	6	34840168	34840168	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:34840168A>C	uc003oju.3	+	21	4510	c.4276A>C	c.(4276-4278)AAA>CAA	p.K1426Q	UHRF1BP1_uc010jvm.1_Intron|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	1426	Potential.									ovary(3)	3						GGATAAAGAAAAACTTCTTCA	0.418													23	54					0	0	1	0	0	
ANKS1A	23294	broad.mit.edu	37	6	34953007	34953007	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:34953007G>A	uc003ojx.3	+	8	1303	c.1161G>A	c.(1159-1161)ACG>ACA	p.T387T	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	387						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						AAGACTCCACGAACAAGGAGG	0.587													20	64					0	0	1	0	0	
SCUBE3	222663	broad.mit.edu	37	6	35213122	35213122	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:35213122G>A	uc003okf.1	+	19	2525	c.2519G>A	c.(2518-2520)CGC>CAC	p.R840H	SCUBE3_uc003okg.1_Missense_Mutation_p.R839H|SCUBE3_uc003okh.1_Missense_Mutation_p.R727H	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	840	CUB.				protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						CCACCCAAGCGCAAGATCCTT	0.557													11	92					0	0	1	0	0	
PPARD	5467	broad.mit.edu	37	6	35391736	35391736	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:35391736T>C	uc003okm.2	+	6	747	c.438T>C	c.(436-438)GGT>GGC	p.G146G	PPARD_uc003okl.2_Silent_p.G146G|PPARD_uc003okn.2_Silent_p.G146G|PPARD_uc011dtb.1_Silent_p.G107G|PPARD_uc011dtc.1_Silent_p.G48G|PPARD_uc010jvv.1_RNA	NM_006238	NP_006229	Q03181	PPARD_HUMAN	peroxisome proliferative activated receptor,	146					apoptosis|axon ensheathment|cholesterol metabolic process|decidualization|embryo implantation|fatty acid beta-oxidation|fatty acid transport|generation of precursor metabolites and energy|glucose metabolic process|glucose transport|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fat cell differentiation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|linoleic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1					Icosapent(DB00159)|Sulindac(DB00605)|Treprostinil(DB00374)	TCCGTTTTGGTCGGATGCCGG	0.622													19	37					0	0	1	0	0	
FKBP5	2289	broad.mit.edu	37	6	35547912	35547912	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:35547912C>T	uc011dte.1	-	9	1130	c.927G>A	c.(925-927)TCG>TCA	p.S309S	FKBP5_uc003okx.2_Silent_p.S309S|FKBP5_uc011dtf.1_Silent_p.S130S|FKBP5_uc003oky.2_Silent_p.S309S	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	309					protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						CAGAAGCTTTCGATTCCTTTT	0.433													52	99					0	0	1	0	0	
C6orf222	389384	broad.mit.edu	37	6	36288974	36288974	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:36288974A>C	uc003oly.2	-	10	1804	c.1626T>G	c.(1624-1626)CTT>CTG	p.L542L		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	542										skin(2)|ovary(1)|breast(1)	4						GAAGTGCCACAAGCTTCTGGA	0.517													6	8					0	0	1	0	0	
C6orf222	389384	broad.mit.edu	37	6	36298001	36298001	+	Missense_Mutation	SNP	C	T	T	rs141030977		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:36298001C>T	uc003oly.2	-	2	645	c.467G>A	c.(466-468)CGC>CAC	p.R156H		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	156										skin(2)|ovary(1)|breast(1)	4						TTGCTTCTTGCGGCTGGGCTT	0.622													28	60					0	0	1	0	0	
CPNE5	57699	broad.mit.edu	37	6	36767773	36767773	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:36767773G>A	uc003omr.1	-	4	325	c.258C>T	c.(256-258)TTC>TTT	p.F86F	CPNE5_uc003oms.1_Silent_p.F48F	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	86	C2 1.									skin(1)	1						GCTTCTCCTCGAAAAAGTAAT	0.517													15	27					0	0	1	0	0	
MTCH1	23787	broad.mit.edu	37	6	36938221	36938221	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:36938221A>G	uc003ond.1	-	10	983	c.983T>C	c.(982-984)TTC>TCC	p.F328S	MTCH1_uc003onc.1_Missense_Mutation_p.F311S|MTCH1_uc010jwo.1_RNA|MTCH1_uc003one.3_Missense_Mutation_p.F328S|MTCH1_uc011dtt.1_Missense_Mutation_p.F143S	NM_014341	NP_055156	Q9NZJ7	MTCH1_HUMAN	mitochondrial carrier homolog 1	328	Helical; (Potential).				activation of caspase activity|neuronal ion channel clustering|positive regulation of apoptosis|regulation of signal transduction|transport	integral to membrane|mitochondrial inner membrane	protein binding				0						AACTAGCAGGAAGGGGTAGGT	0.622													26	51					0	0	1	0	0	
DNAH8	1769	broad.mit.edu	37	6	38818056	38818056	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:38818056G>T	uc003ooe.1	+	36	5178	c.4578G>T	c.(4576-4578)AAG>AAT	p.K1526N		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATATTGACAAGTCTTGGATAA	0.363													8	99					0.0381472	0.0383344	1	1	0	
DNAH8	1769	broad.mit.edu	37	6	38994321	38994321	+	Splice_Site	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:38994321G>T	uc003ooe.1	+	90	13664	c.13064_splice	c.e90-1	p.G4355_splice		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTTTCTTTAAGGCTTCCTCAC	0.433													12	41					1.05317e-09	1.13491e-09	1	1	0	
GLP1R	2740	broad.mit.edu	37	6	39046914	39046914	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:39046914C>A	uc003ooj.3	+	10	1041	c.981C>A	c.(979-981)GTC>GTA	p.V327V	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	327	Helical; Name=5; (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	TTGTTCGGGTCATCTGCATCG	0.557													61	101					3.94839e-29	4.8097e-29	1	1	0	
LRFN2	57497	broad.mit.edu	37	6	40359708	40359708	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:40359708C>T	uc003oph.1	-	3	2809	c.2344G>A	c.(2344-2346)GAA>AAA	p.E782K		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	782	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					ATCACCCATTCGGAGCTGCCA	0.597													30	50					0	0	1	0	0	
BYSL	705	broad.mit.edu	37	6	41898422	41898422	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:41898422T>C	uc003orl.2	+	4	956	c.620T>C	c.(619-621)ATC>ACC	p.I207T		NM_004053	NP_004044	Q13895	BYST_HUMAN	bystin	207					cell adhesion|female pregnancy|ribosome biogenesis	cytoplasm|nucleolus					0	Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000473)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			TTTAAGATCATCCCTGCACTC	0.512													8	52					0	0	1	0	0	
PRPH2	5961	broad.mit.edu	37	6	42666207	42666207	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:42666207C>T	uc003osk.2	-	3	1153	c.867G>A	c.(865-867)TCG>TCA	p.S289S		NM_000322	NP_000313	P23942	PRPH2_HUMAN	peripherin 2	289	Helical; (Potential).				cell adhesion|visual perception	integral to membrane				ovary(4)|central_nervous_system(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.00178)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0904)			CACCATCCAGCGACGTCTGTA	0.587													19	62					0	0	1	0	0	
GNMT	27232	broad.mit.edu	37	6	42931424	42931424	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:42931424G>A	uc003otd.2	+	6	874	c.868G>A	c.(868-870)GTG>ATG	p.V290M	uc003ote.1_5'Flank	NM_018960	NP_061833	Q14749	GNMT_HUMAN	glycine N-methyltransferase	290					protein homotetramerization|protein modification process|S-adenosylmethionine metabolic process		folic acid binding|glycine binding|glycine N-methyltransferase activity				0	Colorectal(47;0.196)		all cancers(41;0.00196)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0461)		Glycine(DB00145)|S-Adenosylmethionine(DB00118)	CTTCATCCACGTGCTCAAGAG	0.597													21	37					0	0	1	0	0	
PPP2R5D	5528	broad.mit.edu	37	6	42978669	42978669	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:42978669G>A	uc003oth.2	+	15	1691	c.1605G>A	c.(1603-1605)GAG>GAA	p.E535E	MEA1_uc010jyc.1_Intron|PPP2R5D_uc003otg.2_Silent_p.E503E|PPP2R5D_uc010jyd.2_Silent_p.E429E|PPP2R5D_uc011dva.1_Silent_p.E384E|PPP2R5D_uc003oti.2_Silent_p.E384E|PPP2R5D_uc003otj.2_Silent_p.E366E	NM_006245	NP_006236	Q14738	2A5D_HUMAN	delta isoform of regulatory subunit B56, protein	535					nervous system development|signal transduction	cytoplasm|nucleus|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			breast(1)|central_nervous_system(1)	2			Colorectal(64;0.00237)|all cancers(41;0.00411)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0664)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			ACTCGATGGAGACAGAGACCC	0.567													43	84					0	0	1	0	0	
MRPL2	51069	broad.mit.edu	37	6	43024071	43024071	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:43024071A>C	uc003ots.1	-	3	501	c.378T>G	c.(376-378)GTT>GTG	p.V126V	CUL7_uc011dvb.1_5'Flank|CUL7_uc003otq.2_5'Flank|CUL7_uc010jyh.2_5'Flank|KLC4_uc003otr.1_Intron|MRPL2_uc011dvc.1_Silent_p.V126V	NM_015950	NP_057034	Q5T653	RM02_HUMAN	mitochondrial ribosomal protein L2 precursor	126					translation	mitochondrion|ribosome	structural constituent of ribosome				0		Ovarian(999;0.0014)	Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00708)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)	BRCA - Breast invasive adenocarcinoma(397;0.0026)		GGACTTGGATAACCTTCTCCT	0.507													31	56					0	0	1	0	0	
CUL9	23113	broad.mit.edu	37	6	43156447	43156447	+	Missense_Mutation	SNP	C	T	T	rs79064744	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:43156447C>T	uc003ouk.2	+	8	2249	c.2174C>T	c.(2173-2175)TCG>TTG	p.S725L	CUL9_uc003ouj.1_3'UTR|CUL9_uc003oul.2_Missense_Mutation_p.S725L|CUL9_uc010jyk.2_5'UTR|CUL9_uc003oum.1_3'UTR	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	725					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						CCTGACAGATCGCTGAGGTTA	0.547													16	32					0	0	1	0	0	
CUL9	23113	broad.mit.edu	37	6	43166427	43166427	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:43166427G>T	uc003ouk.2	+	12	2959	c.2884G>T	c.(2884-2886)GAA>TAA	p.E962*	CUL9_uc003oul.2_Nonsense_Mutation_p.E962*|CUL9_uc010jyk.2_Nonsense_Mutation_p.E114*	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	962					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						CCCATCTGCAGAACTACTCCT	0.632													70	150					1.12115e-39	1.38906e-39	1	1	0	
ZNF318	24149	broad.mit.edu	37	6	43306479	43306479	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:43306479C>A	uc003oux.2	-	10	5335	c.5257G>T	c.(5257-5259)GAA>TAA	p.E1753*	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1753					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TTAACAGATTCTCTGAGGTGG	0.433													47	87					1.89013e-27	2.29391e-27	1	1	0	
ZNF318	24149	broad.mit.edu	37	6	43323460	43323460	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:43323460G>T	uc003oux.2	-	4	1690	c.1612C>A	c.(1612-1614)CTC>ATC	p.L538I	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	538					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TCCCCATAGAGAAATTTCTCC	0.483													133	224					5.78353e-53	7.20589e-53	1	1	0	
ZNF318	24149	broad.mit.edu	37	6	43323494	43323494	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:43323494A>G	uc003oux.2	-	4	1656	c.1578T>C	c.(1576-1578)CGT>CGC	p.R526R	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	526					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CGGGAAAGCTACGTCGCCTTT	0.493													138	264					0	0	1	0	0	
ABCC10	89845	broad.mit.edu	37	6	43400462	43400462	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:43400462C>T	uc003ouy.1	+	3	959	c.744C>T	c.(742-744)TGC>TGT	p.C248C	ABCC10_uc003ouz.1_Silent_p.C205C	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	248						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			AGGACATTTGCCGCCTCCCCC	0.642													32	56					0	0	1	0	0	
GTPBP2	54676	broad.mit.edu	37	6	43592340	43592340	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:43592340A>G	uc003ovs.2	-	7	1044	c.1007T>C	c.(1006-1008)GTC>GCC	p.V336A	GTPBP2_uc010jyv.2_Missense_Mutation_p.V248A|GTPBP2_uc003ovt.1_Missense_Mutation_p.V336A	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	336							GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			CTGCTTGAGGACCCGCTCCAG	0.597													23	49					0	0	1	0	0	
TMEM63B	55362	broad.mit.edu	37	6	44103088	44103088	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:44103088G>A	uc003owr.2	+	4	327	c.263G>A	c.(262-264)CGA>CAA	p.R88Q	TMEM63B_uc003owq.1_Missense_Mutation_p.R88Q|TMEM63B_uc010jyy.1_Intron|TMEM63B_uc003ows.2_Intron	NM_018426	NP_060896	Q5T3F8	TM63B_HUMAN	transmembrane protein 63B	88						integral to membrane	nucleotide binding|protein binding			pancreas(2)|central_nervous_system(1)	3	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0215)			GAGAGGGACCGAGTGGAACAG	0.587													8	14					0	0	1	0	0	
TCTE1	202500	broad.mit.edu	37	6	44250104	44250104	+	Missense_Mutation	SNP	G	A	A	rs114241529	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:44250104G>A	uc003oxi.2	-	4	1195	c.1039C>T	c.(1039-1041)CGT>TGT	p.R347C	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	347	LRR 2.									ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CCGGGTGCACGCACCTGGTTG	0.597													52	100					0	0	1	0	0	
CDC5L	988	broad.mit.edu	37	6	44360556	44360556	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:44360556A>C	uc003oxl.2	+	3	561	c.302A>C	c.(301-303)GAA>GCA	p.E101A		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	101	H-T-H motif (By similarity).|HTH myb-type 2.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GAACACTATGAATTTCTTCTG	0.388													11	38					0	0	1	0	0	
SLC25A27	9481	broad.mit.edu	37	6	46630234	46630234	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:46630234C>T	uc003oyh.2	+	4	756	c.505C>T	c.(505-507)CGA>TGA	p.R169*	SLC25A27_uc011dwb.1_Nonsense_Mutation_p.R169*|SLC25A27_uc003oyg.2_Nonsense_Mutation_p.R169*|SLC25A27_uc011dwc.1_Nonsense_Mutation_p.R83*|SLC25A27_uc003oyi.2_Nonsense_Mutation_p.R99*	NM_004277	NP_004268	O95847	UCP4_HUMAN	solute carrier family 25, member 27	169	Solcar 2.				generation of precursor metabolites and energy|transport	integral to membrane|mitochondrial inner membrane					0			Lung(136;0.192)			AAAACCATTGCGGTAAGTTCT	0.398													21	52					0	0	1	0	0	
TDRD6	221400	broad.mit.edu	37	6	46657305	46657305	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:46657305T>G	uc003oyj.2	+	1	1440	c.1440T>G	c.(1438-1440)TCT>TCG	p.S480S	TDRD6_uc010jze.2_Silent_p.S474S	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	480					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			CCTTAAGATCTATCAGGTTAA	0.433													45	88					0	0	1	0	0	
PLA2G7	7941	broad.mit.edu	37	6	46677131	46677131	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:46677131C>T	uc010jzf.2	-	9	1071	c.802G>A	c.(802-804)GCA>ACA	p.A268T	PLA2G7_uc010jzg.1_Missense_Mutation_p.A268T	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	268					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			CCAATTACTGCTATTTTTTCC	0.308													29	74					0	0	1	0	0	
MEP1A	4224	broad.mit.edu	37	6	46803248	46803248	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:46803248C>T	uc010jzh.1	+	13	2088	c.2046C>T	c.(2044-2046)GAC>GAT	p.D682D	MEP1A_uc011dwg.1_Silent_p.D404D|MEP1A_uc011dwh.1_Silent_p.D710D|MEP1A_uc011dwi.1_Silent_p.D582D	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	682	EGF-like.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			GCCAAAATGACGGCATCTGTG	0.607													5	27					0	0	1	0	0	
GPR116	221395	broad.mit.edu	37	6	46821800	46821800	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:46821800T>G	uc003oyo.3	-	21	4259	c.3970A>C	c.(3970-3972)AAT>CAT	p.N1324H	GPR116_uc011dwj.1_Missense_Mutation_p.N879H|GPR116_uc011dwk.1_3'UTR|GPR116_uc003oyp.3_Missense_Mutation_p.N1182H|GPR116_uc003oyq.3_Missense_Mutation_p.N1324H	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1324	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GTGGAAACATTATACGTTCCT	0.493													34	53					0	0	1	0	0	
GPR110	266977	broad.mit.edu	37	6	46996794	46996794	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:46996794T>G	uc003oyt.2	-	2	203	c.4A>C	c.(4-6)AAA>CAA	p.K2Q	GPR110_uc011dwl.1_5'UTR|GPR110_uc003oyu.1_Missense_Mutation_p.K2Q	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	2					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						ACTCCAACTTTCATTTTCCCT	0.488													24	57					0	0	1	0	0	
MUT	4594	broad.mit.edu	37	6	49419394	49419394	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:49419394C>A	uc003ozg.3	-	6	1372	c.1117G>T	c.(1117-1119)GAA>TAA	p.E373*		NM_000255	NP_000246	P22033	MUTA_HUMAN	methylmalonyl Coenzyme A mutase precursor	373					fatty acid beta-oxidation	mitochondrial matrix	cobalamin binding|metal ion binding|methylmalonyl-CoA mutase activity				0	Lung NSC(77;0.0376)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GCCATTGCTTCTATTGCAGTA	0.368													25	39					4.4004e-07	4.60384e-07	1	1	0	
TFAP2D	83741	broad.mit.edu	37	6	50696595	50696595	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:50696595G>T	uc003paf.2	+	4	1137	c.625G>T	c.(625-627)GAC>TAC	p.D209Y	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	209							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					CAACCCCACAGACTTATTTTG	0.463													25	65					1.16021e-09	1.2491e-09	1	1	0	
TFAP2B	7021	broad.mit.edu	37	6	50796360	50796360	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:50796360T>C	uc003pag.2	+	3	735	c.569T>C	c.(568-570)ATG>ACG	p.M190T		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	190					nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					AACAGCGGCATGAATCTATTG	0.328													40	78					0	0	1	0	0	
TFAP2B	7021	broad.mit.edu	37	6	50810818	50810818	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:50810818G>T	uc003pag.2	+	7	1262	c.1096G>T	c.(1096-1098)GAA>TAA	p.E366*		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	366				QLCKEFTDLLAQDRTPIGNSRPSPILEPGIQSCLTHFSLIT HGFGAPAICAALTALQNYLTEALKGMDKMFLNNTTTNRHTS GEGPGSKTGDKEEKHRK -> GNFVKNLRIYWRRTGHR (in Ref. 1; CAA71047).	nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					ACTTTGTAAAGAATTTACGGA	0.567													119	63					1.88967e-73	2.36014e-73	1	1	0	
PKHD1	5314	broad.mit.edu	37	6	51524753	51524753	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:51524753C>A	uc003pah.1	-	61	10447	c.10171G>T	c.(10171-10173)GAA>TAA	p.E3391*		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3391	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CATTTCTGTTCTTCTCTAAAT	0.348													17	26					9.16793e-09	9.77785e-09	1	1	0	
PKHD1	5314	broad.mit.edu	37	6	51612618	51612618	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:51612618C>A	uc003pah.1	-	58	10072	c.9796G>T	c.(9796-9798)GAT>TAT	p.D3266Y	PKHD1_uc010jzn.1_Missense_Mutation_p.D1249Y|PKHD1_uc003pai.2_Missense_Mutation_p.D3266Y	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3266	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					ATTGAATGATCATTCCTCACT	0.408													34	78					6.02846e-25	7.25611e-25	1	1	0	
PKHD1	5314	broad.mit.edu	37	6	51613035	51613035	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:51613035G>A	uc003pah.1	-	58	9655	c.9379C>T	c.(9379-9381)CTT>TTT	p.L3127F	PKHD1_uc010jzn.1_Missense_Mutation_p.L1110F|PKHD1_uc003pai.2_Missense_Mutation_p.L3127F	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3127	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					AGGCCATGAAGACTTGAATGC	0.468													116	248					0	0	1	0	0	
PKHD1	5314	broad.mit.edu	37	6	51747971	51747971	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:51747971C>A	uc003pah.1	-	46	7546	c.7270G>T	c.(7270-7272)GAT>TAT	p.D2424Y	PKHD1_uc010jzn.1_Missense_Mutation_p.D407Y|PKHD1_uc003pai.2_Missense_Mutation_p.D2424Y	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2424	Extracellular (Potential).|PbH1 5.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					ATTCCAAAATCTCTGCATGAA	0.368													21	30					1.55795e-14	1.75964e-14	1	1	0	
PKHD1	5314	broad.mit.edu	37	6	51892664	51892664	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:51892664T>G	uc003pah.1	-	31	3867	c.3591A>C	c.(3589-3591)GAA>GAC	p.E1197D	PKHD1_uc003pai.2_Missense_Mutation_p.E1197D	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1197	Extracellular (Potential).|IPT/TIG 7.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TGCTGAAAACTTCTGTGAGGT	0.438													29	47					0	0	1	0	0	
PAQR8	85315	broad.mit.edu	37	6	52268312	52268312	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:52268312G>A	uc003pao.3	+	2	475	c.301G>A	c.(301-303)GCC>ACC	p.A101T		NM_133367	NP_588608	Q8TEZ7	MPRB_HUMAN	progestin and adipoQ receptor family member	101	Extracellular (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding				0	Lung NSC(77;0.0875)					CGAGGCTGAGGCCTTGCCATG	0.592													33	79					0	0	1	0	0	
GSTA5	221357	broad.mit.edu	37	6	52702399	52702399	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:52702399C>A	uc003pba.1	-	3	166	c.96G>T	c.(94-96)GAG>GAT	p.E32D		NM_153699	NP_714543	Q7RTV2	GSTA5_HUMAN	glutathione S-transferase alpha 5	32	GST N-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.0912)				Glutathione(DB00143)	CTAGAAATTTCTCTTCCAACT	0.368													19	50					2.4624e-09	2.64481e-09	1	1	0	
GSTA4	2941	broad.mit.edu	37	6	52859107	52859107	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:52859107C>T	uc003pbc.2	-	1	1	c.-63_splice	c.e1-1		GSTA4_uc003pbd.2_Splice_Site|GSTA4_uc003pbe.2_Splice_Site|GSTA4_uc003pbf.2_Intron|GSTA4_uc003pbg.2_5'Flank	NM_001512	NP_001503	O15217	GSTA4_HUMAN	glutathione S-transferase alpha 4						glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity|protein homodimerization activity				0	Lung NSC(77;0.103)				Glutathione(DB00143)	GTCCCAATTTCGCGTCTTCAA	0.473													14	25					0	0	1	0	0	
ICK	22858	broad.mit.edu	37	6	52897353	52897353	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:52897353G>T	uc003pbh.2	-	5	746	c.256C>A	c.(256-258)CTT>ATT	p.L86I	ICK_uc003pbi.2_Missense_Mutation_p.L86I|ICK_uc003pbj.2_Missense_Mutation_p.L86I	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	86	Protein kinase.				intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					AGCTGGTAAAGATTTTCCTTC	0.284													17	17					1.15919e-05	1.19703e-05	1	1	0	
FBXO9	26268	broad.mit.edu	37	6	52960345	52960345	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:52960345G>A	uc003pbo.2	+	12	1169	c.1118G>A	c.(1117-1119)CGT>CAT	p.R373H	FBXO9_uc003pbk.2_Missense_Mutation_p.R329H|FBXO9_uc003pbl.2_Missense_Mutation_p.R363H|FBXO9_uc003pbm.2_Missense_Mutation_p.R253H|FBXO9_uc003pbn.2_Missense_Mutation_p.R253H	NM_012347	NP_036479	Q9UK97	FBX9_HUMAN	F-box only protein 9 isoform 1	373						ubiquitin ligase complex	ubiquitin-protein ligase activity			pancreas(1)	1	Lung NSC(77;0.103)					TATTTTCGTCGTGTCCCTGTA	0.378													17	23					0	0	1	0	0	
LRRC1	55227	broad.mit.edu	37	6	53767437	53767437	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:53767437G>T	uc003pcd.1	+	9	1075	c.798G>T	c.(796-798)AAG>AAT	p.K266N		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	266	LRR 12.					cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		GAAAACTAAAGAAACTGTCAA	0.333													24	59					1.10923e-09	1.19438e-09	1	1	0	
LRRC1	55227	broad.mit.edu	37	6	53785469	53785469	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:53785469C>A	uc003pcd.1	+	13	1603	c.1326C>A	c.(1324-1326)GTC>GTA	p.V442V		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	442						cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		TAAATGATGTCTCTGATGAAG	0.463													33	54					2.81731e-10	3.05284e-10	1	1	0	
C6orf142	90523	broad.mit.edu	37	6	53989606	53989606	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:53989606G>T	uc003pcg.3	+	3	668	c.555G>T	c.(553-555)AAG>AAT	p.K185N	C6orf142_uc003pcf.2_Missense_Mutation_p.K185N|C6orf142_uc003pch.3_Missense_Mutation_p.K123N|C6orf142_uc011dwz.1_Missense_Mutation_p.K144N|C6orf142_uc011dxa.1_Missense_Mutation_p.K196N	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	185						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					CTGATCTCAAGACCTCATCAC	0.522													19	47					3.99206e-14	4.49031e-14	1	1	0	
TINAG	27283	broad.mit.edu	37	6	54214548	54214548	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:54214548G>T	uc003pcj.2	+	7	1080	c.934G>T	c.(934-936)GAC>TAC	p.D312Y	TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	312					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			ACTTTTCAAAGACCAAAATGC	0.428													37	79					9.45814e-24	1.13393e-23	1	1	0	
HCRTR2	3062	broad.mit.edu	37	6	55145214	55145214	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:55145214G>A	uc003pcl.2	+	6	1392	c.1077G>A	c.(1075-1077)GCG>GCA	p.A359A	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	359	Helical; Name=7; (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			ATAGTGCTGCGAATCCAATTA	0.343													38	63					0	0	1	0	0	
BMP5	653	broad.mit.edu	37	6	55659124	55659124	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:55659124T>G	uc003pcq.2	-	3	1497	c.785A>C	c.(784-786)AAT>ACT	p.N262T	BMP5_uc011dxf.1_Missense_Mutation_p.N262T	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	262					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			ATTCTGGGGATTAATCACCCA	0.403													30	68					0	0	1	0	0	
DST	667	broad.mit.edu	37	6	56325025	56325025	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:56325025G>A	uc003pdf.2	-	96	16697	c.16669C>T	c.(16669-16671)CGA>TGA	p.R5557*	DST_uc003pcz.3_Nonsense_Mutation_p.R5379*|DST_uc011dxj.1_Nonsense_Mutation_p.R5408*|DST_uc011dxk.1_Nonsense_Mutation_p.R5419*|DST_uc003pcy.3_Nonsense_Mutation_p.R5053*|DST_uc003pcv.3_Nonsense_Mutation_p.R175*|DST_uc003pcw.3_Nonsense_Mutation_p.R136*|DST_uc003pcx.3_Nonsense_Mutation_p.R99*	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	7452					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CCTGGAAGTCGAAGCTTGCTT	0.458													16	38					0	0	1	0	0	
DST	667	broad.mit.edu	37	6	56354333	56354333	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:56354333G>A	uc003pdf.2	-	80	14503	c.14475C>T	c.(14473-14475)ATC>ATT	p.I4825I	DST_uc003pcz.3_Silent_p.I4647I|DST_uc011dxj.1_Silent_p.I4676I|DST_uc011dxk.1_Silent_p.I4687I|DST_uc003pcy.3_Silent_p.I4321I|DST_uc003pda.3_Silent_p.I17I	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	6733	Spectrin 18.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			GATCATTTGCGATTTCCAGTT	0.358													33	87					0	0	1	0	0	
ZNF451	26036	broad.mit.edu	37	6	56963933	56963933	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:56963933T>C	uc003pdm.1	+	3	404	c.180T>C	c.(178-180)TAT>TAC	p.Y60Y	ZNF451_uc003pdl.2_Silent_p.Y60Y|ZNF451_uc003pdn.1_Silent_p.Y60Y|ZNF451_uc011dxn.1_Silent_p.Y60Y|ZNF451_uc003pdk.1_Silent_p.Y60Y|ZNF451_uc003pdo.2_RNA|uc003pdp.2_5'Flank	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	60					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			GCACCTCTTATACTGATGTAA	0.358													14	25					0	0	1	0	0	
ZNF451	26036	broad.mit.edu	37	6	56997971	56997971	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:56997971C>T	uc003pdm.1	+	6	780	c.556C>T	c.(556-558)CTC>TTC	p.L186F	ZNF451_uc003pdl.2_Missense_Mutation_p.L186F|ZNF451_uc003pdn.1_Missense_Mutation_p.L186F|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.L186F	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	186	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			TGGGCACCTTCTCTTAGGACA	0.393													23	85					0	0	1	0	0	
RAB23	51715	broad.mit.edu	37	6	57061318	57061318	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:57061318C>T	uc003pds.2	-	4	534	c.328G>A	c.(328-330)GAA>AAA	p.E110K	RAB23_uc003pdt.2_Missense_Mutation_p.E110K|RAB23_uc010kac.2_Missense_Mutation_p.E110K|RAB23_uc010kad.2_Intron	NM_183227	NP_899050	Q9ULC3	RAB23_HUMAN	Ras-related protein Rab-23	110					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			skin(1)	1	Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			TCTCCCACTTCGGCTACTACT	0.428													46	70					0	0	1	0	0	
PRIM2	5558	broad.mit.edu	37	6	57467169	57467169	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:57467169T>G	uc003pdx.2	+	12	1197	c.1110T>G	c.(1108-1110)ATT>ATG	p.I370M		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	370					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		GCCTGAAGATTATTCTATCCA	0.438													16	109					0	0	1	0	0	
PRIM2	5558	broad.mit.edu	37	6	57472420	57472420	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:57472420C>A	uc003pdx.2	+	13	1296	c.1209C>A	c.(1207-1209)ATC>ATA	p.I403I		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	403					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		CATACAAGATCTCTCCTGGAG	0.443													7	52					1.06961e-07	1.12684e-07	1	1	0	
PHF3	23469	broad.mit.edu	37	6	64395212	64395212	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:64395212G>A	uc003pep.1	+	3	1615	c.1589G>A	c.(1588-1590)CGA>CAA	p.R530Q	PHF3_uc010kaf.1_Missense_Mutation_p.R530Q|PHF3_uc003pem.2_Missense_Mutation_p.R483Q|PHF3_uc010kag.1_Missense_Mutation_p.R442Q|PHF3_uc010kah.1_Missense_Mutation_p.R344Q|PHF3_uc003pen.2_Missense_Mutation_p.R442Q|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Missense_Mutation_p.R530Q	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	530					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			AGTGTGAAACGAAATACTGAT	0.343													21	48					0	0	1	0	0	
PHF3	23469	broad.mit.edu	37	6	64395712	64395712	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:64395712A>C	uc003pep.1	+	3	2115	c.2089A>C	c.(2089-2091)ATA>CTA	p.I697L	PHF3_uc010kaf.1_Missense_Mutation_p.I697L|PHF3_uc003pem.2_Missense_Mutation_p.I650L|PHF3_uc010kag.1_Missense_Mutation_p.I609L|PHF3_uc010kah.1_Missense_Mutation_p.I511L|PHF3_uc003pen.2_Missense_Mutation_p.I609L|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Missense_Mutation_p.I697L	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	697					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			CATAGCTACCATAAGAAGAGA	0.418													38	84					0	0	1	0	0	
MCART3P	442229	broad.mit.edu	37	6	66498858	66498858	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:66498858A>G	uc011dxw.1	+	1		c.1087A>G				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						TCCAGAATGGACTCAGTAATG	0.428													32	70					0	0	1	0	0	
MCART3P	442229	broad.mit.edu	37	6	66499086	66499086	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:66499086G>A	uc011dxw.1	+	1		c.1315G>A				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						TGGCTGGAACGGGACAGAAAA	0.373													18	38					0	0	1	0	0	
BAI3	577	broad.mit.edu	37	6	69666665	69666665	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:69666665G>A	uc003pev.3	+	8	1937	c.1489G>A	c.(1489-1491)GAA>AAA	p.E497K	BAI3_uc010kak.2_Missense_Mutation_p.E497K	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	497	TSP type-1 4.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AGGAACGGGCGAAGAAGTGAG	0.453													22	71					0	0	1	0	0	
LMBRD1	55788	broad.mit.edu	37	6	70407530	70407530	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:70407530T>C	uc003pfa.2	-	14	1457	c.1342A>G	c.(1342-1344)AAT>GAT	p.N448D	LMBRD1_uc003pey.2_Missense_Mutation_p.N244D|LMBRD1_uc003pez.2_Missense_Mutation_p.N375D|LMBRD1_uc010kal.2_Missense_Mutation_p.N375D|LMBRD1_uc003pfb.2_RNA	NM_018368	NP_060838	Q9NUN5	LMBD1_HUMAN	liver regeneration p-53 related protein	448	Extracellular (Potential).			N->Q: Affects glycosylation status; when associated with Q-457.	interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			ovary(1)	1						GAAGTTATATTAGTCTGAAAG	0.294													21	47					0	0	1	0	0	
COL9A1	1297	broad.mit.edu	37	6	71009840	71009840	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:71009840C>T	uc003pfg.3	-	4	364	c.205G>A	c.(205-207)GCA>ACA	p.A69T		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	69	Nonhelical region (NC4).|TSP N-terminal.				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						CTTCTAGATGCTGCTTTATCT	0.383													23	49					0	0	1	0	0	
FAM135A	57579	broad.mit.edu	37	6	71235543	71235543	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:71235543A>C	uc003pfj.2	+	13	2889	c.2756A>C	c.(2755-2757)GAC>GCC	p.D919A	FAM135A_uc003pfi.2_Missense_Mutation_p.D723A|FAM135A_uc003pfh.2_Missense_Mutation_p.D706A|FAM135A_uc003pfl.2_Missense_Mutation_p.D586A|FAM135A_uc003pfn.2_Intron|FAM135A_uc003pfo.1_Missense_Mutation_p.D290A|FAM135A_uc010kan.1_5'Flank	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	919										central_nervous_system(1)	1						AGCATTAAAGACCCTTTACAA	0.363													33	66					0	0	1	0	0	
RIMS1	22999	broad.mit.edu	37	6	72975748	72975748	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:72975748G>A	uc003pga.2	+	22	3471	c.3394G>A	c.(3394-3396)GAA>AAA	p.E1132K	RIMS1_uc011dyb.1_Intron|RIMS1_uc003pgc.2_Missense_Mutation_p.E694K|RIMS1_uc010kaq.2_Missense_Mutation_p.E541K|RIMS1_uc011dyc.1_Missense_Mutation_p.E542K|RIMS1_uc010kar.2_Missense_Mutation_p.E461K|RIMS1_uc011dyd.1_Missense_Mutation_p.E527K|RIMS1_uc003pgf.2_Intron|RIMS1_uc003pgg.2_Missense_Mutation_p.E285K|RIMS1_uc003pgi.2_Intron|RIMS1_uc003pgh.2_Missense_Mutation_p.E284K|RIMS1_uc003pgd.2_Missense_Mutation_p.E311K|RIMS1_uc003pge.2_Missense_Mutation_p.E285K|RIMS1_uc011dye.1_Intron|RIMS1_uc011dyf.1_Intron|RIMS1_uc010kas.1_Missense_Mutation_p.E527K	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1132					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				ACCAGAACGAGAAAGGTATAA	0.383													3	5					0	0	1	0	0	
RIMS1	22999	broad.mit.edu	37	6	73108789	73108789	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:73108789T>C	uc003pga.2	+	33	4930	c.4853T>C	c.(4852-4854)GTT>GCT	p.V1618A	RIMS1_uc011dyb.1_Missense_Mutation_p.V1015A|RIMS1_uc003pgc.2_Missense_Mutation_p.V1033A|RIMS1_uc010kaq.2_Missense_Mutation_p.V938A|RIMS1_uc011dyc.1_Missense_Mutation_p.V743A|RIMS1_uc010kar.2_Missense_Mutation_p.V686A|RIMS1_uc011dyd.1_Missense_Mutation_p.V752A|RIMS1_uc003pgf.2_Missense_Mutation_p.V618A|RIMS1_uc003pgg.2_Missense_Mutation_p.V514A|RIMS1_uc003pgi.2_Missense_Mutation_p.V434A|RIMS1_uc003pgh.2_Missense_Mutation_p.V485A|RIMS1_uc003pgd.2_Missense_Mutation_p.V684A|RIMS1_uc003pge.2_Missense_Mutation_p.V658A|RIMS1_uc011dye.1_Missense_Mutation_p.V424A|RIMS1_uc011dyf.1_Missense_Mutation_p.V242A|RIMS1_uc011dyg.1_Missense_Mutation_p.V145A	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1618	C2 2.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				CAGGGTAAAGTTCTTCAGGTC	0.383													32	45					0	0	1	0	0	
KCNQ5	56479	broad.mit.edu	37	6	73843259	73843259	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:73843259G>A	uc003pgk.2	+	10	1710	c.1363G>A	c.(1363-1365)GAG>AAG	p.E455K	KCNQ5_uc011dyh.1_Missense_Mutation_p.E474K|KCNQ5_uc011dyi.1_Missense_Mutation_p.E465K|KCNQ5_uc010kat.2_Missense_Mutation_p.E446K|KCNQ5_uc011dyj.1_Intron|KCNQ5_uc011dyk.1_Missense_Mutation_p.E205K	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	455					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		CATCACAGCCGAGGGCAGTCC	0.592													42	75					0	0	1	0	0	
C6orf150	115004	broad.mit.edu	37	6	74138502	74138502	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:74138502C>T	uc003pgx.1	-	4	1286	c.1147G>A	c.(1147-1149)GAA>AAA	p.E383K		NM_138441	NP_612450	Q8N884	M21D1_HUMAN	hypothetical protein LOC115004	383											0						ATTTCCTTTTCGATGTGAGAG	0.323													12	33					0	0	1	0	0	
MTO1	25821	broad.mit.edu	37	6	74191931	74191931	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:74191931C>T	uc003pgy.3	+	9	1628	c.1504C>T	c.(1504-1506)CGC>TGC	p.R502C	MTO1_uc010kav.2_Missense_Mutation_p.R517C|MTO1_uc003pgz.3_Missense_Mutation_p.R477C|MTO1_uc003pha.3_Missense_Mutation_p.R139C|MTO1_uc003phb.3_Missense_Mutation_p.R428C	NM_133645	NP_598400	Q9Y2Z2	MTO1_HUMAN	mitochondrial translation optimization 1 homolog	502					tRNA processing	mitochondrion	flavin adenine dinucleotide binding			ovary(3)|skin(2)|pancreas(1)	6						TTTGTCACTGCGCCCTGATAA	0.418													15	55					0	0	1	0	0	
CD109	135228	broad.mit.edu	37	6	74530184	74530184	+	Splice_Site	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:74530184G>A	uc003php.2	+	32	4485	c.4060_splice	c.e32-1	p.V1354_splice	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Splice_Site_p.V1337_splice|CD109_uc010kba.2_Splice_Site_p.V1277_splice	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor							anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TATTTCTCAAGGTAAATGAAA	0.328													16	31					0	0	1	0	0	
COL12A1	1303	broad.mit.edu	37	6	75841699	75841699	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:75841699C>T	uc003phs.2	-	35	6060	c.5894G>A	c.(5893-5895)CGC>CAC	p.R1965H	COL12A1_uc003pht.2_Missense_Mutation_p.R801H	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1965	Fibronectin type-III 15.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						ATACACAACGCGATATTGCAG	0.468													25	49					0	0	1	0	0	
COL12A1	1303	broad.mit.edu	37	6	75848567	75848567	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:75848567C>T	uc003phs.2	-	28	5234	c.5068G>A	c.(5068-5070)GCA>ACA	p.A1690T	COL12A1_uc003pht.2_Missense_Mutation_p.A526T	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1690	Fibronectin type-III 12.			A -> G (in Ref. 1; AAC51244).	cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CCAAAAGGTGCCCAAGTTATT	0.403													35	76					0	0	1	0	0	
COL12A1	1303	broad.mit.edu	37	6	75890799	75890799	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:75890799C>A	uc003phs.2	-	11	2186	c.2020G>T	c.(2020-2022)GAG>TAG	p.E674*	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_Nonsense_Mutation_p.E332*	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	674	Fibronectin type-III 3.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						ACAGTGACCTCATCATCCCCA	0.478													44	62					6.07928e-31	7.44305e-31	1	1	0	
COL12A1	1303	broad.mit.edu	37	6	75893216	75893216	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:75893216G>T	uc003phs.2	-	10	1607	c.1441C>A	c.(1441-1443)CTT>ATT	p.L481I	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_Missense_Mutation_p.L139I	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	481	VWFA 2.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TATTGCACAAGACTAATCTGG	0.363													34	76					9.04072e-19	1.05817e-18	1	1	0	
FILIP1	27145	broad.mit.edu	37	6	76018411	76018411	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:76018411C>T	uc003pia.2	-	6	4011	c.3638G>A	c.(3637-3639)GGC>GAC	p.G1213D	FILIP1_uc003phy.1_Intron|FILIP1_uc003phz.2_Missense_Mutation_p.G1114D|FILIP1_uc010kbe.2_Missense_Mutation_p.G1216D	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	1213										skin(3)|ovary(1)	4						CTGCCCTCAGCCCTTCCCCCC	0.493													56	135					0	0	1	0	0	
MYO6	4646	broad.mit.edu	37	6	76551007	76551007	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:76551007G>T	uc003pih.1	+	9	1007	c.728G>T	c.(727-729)AGA>ATA	p.R243I	MYO6_uc003pig.1_Missense_Mutation_p.R243I|MYO6_uc003pii.1_Missense_Mutation_p.R243I	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	243	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		AAAGAGGAAAGAAATTATCAT	0.353													16	39					4.14922e-12	4.57968e-12	1	1	0	
MYO6	4646	broad.mit.edu	37	6	76551055	76551055	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:76551055T>C	uc003pih.1	+	9	1055	c.776T>C	c.(775-777)ATT>ACT	p.I259T	MYO6_uc003pig.1_Missense_Mutation_p.I259T|MYO6_uc003pii.1_Missense_Mutation_p.I259T	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	259	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		TCTGAAGATATTAGAGAAAAA	0.284													14	38					0	0	1	0	0	
MYO6	4646	broad.mit.edu	37	6	76604947	76604947	+	Splice_Site	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:76604947G>T	uc003pih.1	+	29	3387	c.3108_splice	c.e29-1	p.R1036_splice	MYO6_uc003pig.1_Intron|MYO6_uc003pii.1_Intron|MYO6_uc003pij.1_5'UTR	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI						actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		TCTTTTCACAGAAATGATGGA	0.303													16	45					8.00594e-06	8.28612e-06	1	1	0	
IMPG1	3617	broad.mit.edu	37	6	76633355	76633355	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:76633355T>C	uc003pik.1	-	16	2442	c.2312A>G	c.(2311-2313)AAC>AGC	p.N771S		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	771					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TTTTACCTTGTTATTTTGTTG	0.279													9	27					0	0	1	0	0	
HTR1B	3351	broad.mit.edu	37	6	78173062	78173062	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:78173062A>G	uc003pil.1	-	1	59	c.59T>C	c.(58-60)GTT>GCT	p.V20A		NM_000863	NP_000854	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B	20	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity				0		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	GGCTTGAGGAACCCAGGTCTC	0.622													36	64					0	0	1	0	0	
PHIP	55023	broad.mit.edu	37	6	79656535	79656535	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:79656535A>C	uc003pir.2	-	37	4489	c.4263T>G	c.(4261-4263)GTT>GTG	p.V1421V	PHIP_uc003piq.2_Silent_p.V445V|PHIP_uc011dyp.1_Silent_p.V1420V|PHIP_uc003pio.3_Silent_p.V307V	NM_017934	NP_060404	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	1421					insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding			large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	6		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		AATCTGATAAAACTGAACTAA	0.368													21	50					0	0	1	0	0	
LCA5	167691	broad.mit.edu	37	6	80222985	80222985	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:80222985C>T	uc003pix.2	-	3	1099	c.664G>A	c.(664-666)GCA>ACA	p.A222T	LCA5_uc003piy.2_Missense_Mutation_p.A222T|LCA5_uc011dyq.1_RNA|LCA5_uc011dyr.1_Missense_Mutation_p.A222T	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	222	Potential.				protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		AGTTTCTTTGCCAAATCATCT	0.358													45	82					0	0	1	0	0	
LCA5	167691	broad.mit.edu	37	6	80223141	80223141	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:80223141C>A	uc003pix.2	-	3	943	c.508G>T	c.(508-510)GCA>TCA	p.A170S	LCA5_uc003piy.2_Missense_Mutation_p.A170S|LCA5_uc011dyq.1_RNA|LCA5_uc011dyr.1_Missense_Mutation_p.A170S	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	170	Potential.				protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		TCTTTGAGTGCTGTAATCTCA	0.358													42	81					8.16277e-20	9.61182e-20	1	1	0	
TTK	7272	broad.mit.edu	37	6	80717654	80717654	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:80717654C>T	uc003pjc.2	+	3	342	c.268C>T	c.(268-270)CGT>TGT	p.R90C	TTK_uc003pjb.3_Missense_Mutation_p.R90C	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	90					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		ATTGATTGGTCGTTACAGTCA	0.388													39	55					0	0	1	0	0	
FAM46A	55603	broad.mit.edu	37	6	82460081	82460081	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:82460081A>G	uc003pjg.2	-	3	978	c.660T>C	c.(658-660)GAT>GAC	p.D220D	FAM46A_uc003pjf.2_Silent_p.D239D	NM_017633	NP_060103	Q96IP4	FA46A_HUMAN	hypothetical protein LOC55603	220											0		all_cancers(76;6.74e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000282)|all_epithelial(107;0.0104)		BRCA - Breast invasive adenocarcinoma(397;0.0428)		TCCGGAGGGAATCCACAAATT	0.393													29	55					0	0	1	0	0	
IBTK	25998	broad.mit.edu	37	6	82914599	82914599	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:82914599A>C	uc003pjl.1	-	17	3113	c.2586T>G	c.(2584-2586)ATT>ATG	p.I862M	IBTK_uc011dyu.1_Translation_Start_Site|IBTK_uc011dyv.1_Missense_Mutation_p.I862M|IBTK_uc011dyw.1_Missense_Mutation_p.I661M|IBTK_uc010kbi.1_Missense_Mutation_p.I556M|IBTK_uc003pjm.2_Missense_Mutation_p.I862M	NM_015525	NP_056340	Q9P2D0	IBTK_HUMAN	inhibitor of Bruton's tyrosine kinase	862					negative regulation of protein phosphorylation|release of sequestered calcium ion into cytosol	cytoplasm|membrane|nucleus	protein kinase binding|protein tyrosine kinase inhibitor activity			ovary(2)|central_nervous_system(2)	4		all_cancers(76;3.38e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.0037)		BRCA - Breast invasive adenocarcinoma(397;0.0901)		CTACTTCACAAATCTCTTTCA	0.274													19	31					0	0	1	0	0	
DOPEY1	23033	broad.mit.edu	37	6	83819957	83819957	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:83819957A>G	uc003pjs.1	+	6	865	c.605A>G	c.(604-606)TAT>TGT	p.Y202C	DOPEY1_uc011dyy.1_Missense_Mutation_p.Y202C|DOPEY1_uc010kbl.1_Missense_Mutation_p.Y202C	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	202					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		GGAATCACGTATGTTCTTGCC	0.433													85	117					0	0	1	0	0	
PGM3	5238	broad.mit.edu	37	6	83884180	83884180	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:83884180C>A	uc003pjv.2	-	10	1195	c.1155G>T	c.(1153-1155)ATG>ATT	p.M385I	PGM3_uc003pjw.2_Missense_Mutation_p.M304I|PGM3_uc011dyz.1_Missense_Mutation_p.M413I	NM_015599	NP_056414	O95394	AGM1_HUMAN	phosphoglucomutase 3	385					dolichol-linked oligosaccharide biosynthetic process|embryo development ending in birth or egg hatching|glucose 1-phosphate metabolic process|hemopoiesis|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	magnesium ion binding|phosphoacetylglucosamine mutase activity|phosphoglucomutase activity				0		all_cancers(76;0.000504)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.068)		BRCA - Breast invasive adenocarcinoma(397;0.0478)		GTTTTATCTTCATTTCAACAG	0.338													15	28					2.48551e-13	2.7759e-13	1	1	0	
PRSS35	167681	broad.mit.edu	37	6	84233365	84233365	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:84233365G>T	uc003pjz.2	+	2	368	c.205G>T	c.(205-207)GAA>TAA	p.E69*	PRSS35_uc010kbm.2_Nonsense_Mutation_p.E69*	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	69					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		ATGCCAGAAAGAACTCCCAAC	0.468													27	70					7.92952e-12	8.72397e-12	1	1	0	
PRSS35	167681	broad.mit.edu	37	6	84233890	84233890	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:84233890G>A	uc003pjz.2	+	2	893	c.730G>A	c.(730-732)GAA>AAA	p.E244K	PRSS35_uc010kbm.2_Missense_Mutation_p.E244K	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	244	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		GAGGATTGCCGAAGGGAGGCC	0.567													21	48					0	0	1	0	0	
CYB5R4	51167	broad.mit.edu	37	6	84618734	84618734	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:84618734C>T	uc003pkf.2	+	4	469	c.337C>T	c.(337-339)CGT>TGT	p.R113C		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	113	Cytochrome b5 heme-binding.				cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		CCAGGTTCATCGTTGGGTCAA	0.418													12	35					0	0	1	0	0	
SYNCRIP	10492	broad.mit.edu	37	6	86333812	86333812	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:86333812G>A	uc003pla.2	-	7	1226	c.685C>T	c.(685-687)CGT>TGT	p.R229C	SYNCRIP_uc003pku.2_Missense_Mutation_p.R229C|SYNCRIP_uc003pkw.2_Missense_Mutation_p.R229C|SYNCRIP_uc003pky.2_Missense_Mutation_p.R131C|SYNCRIP_uc003pkv.2_Missense_Mutation_p.R229C|SYNCRIP_uc003pkx.2_Missense_Mutation_p.R77C|SYNCRIP_uc003pkz.2_Missense_Mutation_p.R229C	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	229	RRM 1.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		TTTCCAGAACGAATTTCATGA	0.328													19	49					0	0	1	0	0	
SYNCRIP	10492	broad.mit.edu	37	6	86349994	86349994	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:86349994T>C	uc003pla.2	-	4	861	c.320A>G	c.(319-321)AAA>AGA	p.K107R	SYNCRIP_uc003pku.2_Missense_Mutation_p.K107R|SYNCRIP_uc003pkw.2_Missense_Mutation_p.K107R|SYNCRIP_uc003pky.2_Missense_Mutation_p.K9R|SYNCRIP_uc003pkv.2_Missense_Mutation_p.K107R|SYNCRIP_uc003pkx.2_5'UTR|SYNCRIP_uc003pkz.2_Missense_Mutation_p.K107R	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	107					CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		GGTCCCTTGTTTTTCTCTCTG	0.338													49	81					0	0	1	0	0	
HTR1E	3354	broad.mit.edu	37	6	87725558	87725558	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:87725558C>T	uc003pli.2	+	2	1209	c.506C>T	c.(505-507)CCC>CTC	p.P169L		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	169	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	CTAAGCCCTCCCCCTAGTCAG	0.532													34	82					0	0	1	0	0	
ZNF292	23036	broad.mit.edu	37	6	87967536	87967536	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:87967536C>T	uc003plm.3	+	8	4230	c.4189C>T	c.(4189-4191)CGA>TGA	p.R1397*		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1397	C2H2-type 8; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		CTTATCCAAGCGATCTTACTG	0.448													39	66					0	0	1	0	0	
ZNF292	23036	broad.mit.edu	37	6	87969690	87969690	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:87969690C>T	uc003plm.3	+	8	6384	c.6343C>T	c.(6343-6345)CGA>TGA	p.R2115*		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2115	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		CAGACCTTATCGATGTGTTCA	0.418													33	81					0	0	1	0	0	
C6orf165	154313	broad.mit.edu	37	6	88120335	88120335	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:88120335C>T	uc003plv.2	+	3	233	c.141C>T	c.(139-141)GGC>GGT	p.G47G	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Silent_p.G47G	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	47										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		CAAGTAATGGCTTTAACATGG	0.348													29	76					0	0	1	0	0	
C6orf165	154313	broad.mit.edu	37	6	88123615	88123615	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:88123615C>T	uc003plv.2	+	4	372	c.280C>T	c.(280-282)CGA>TGA	p.R94*	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Nonsense_Mutation_p.R94*	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	94										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		TTATACGAATCGAGGTAATGT	0.313													30	41					0	0	1	0	0	
C6orf165	154313	broad.mit.edu	37	6	88126425	88126425	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:88126425A>G	uc003plv.2	+	6	603	c.511A>G	c.(511-513)ACA>GCA	p.T171A	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.T171A	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	171										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		AGAGCTTGGGACATTTCTAAC	0.358													11	20					0	0	1	0	0	
C6orf165	154313	broad.mit.edu	37	6	88170746	88170746	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:88170746G>A	uc003plv.2	+	12	1593	c.1501G>A	c.(1501-1503)GAT>AAT	p.D501N	SLC35A1_uc003plx.2_RNA|C6orf165_uc003plw.2_Missense_Mutation_p.D313N|C6orf165_uc010kbv.1_RNA	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	501										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		TTAGATGAGAGATGCTGACAA	0.303													15	34					0	0	1	0	0	
C6orf165	154313	broad.mit.edu	37	6	88170802	88170802	+	Silent	SNP	G	A	A	rs149608815	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:88170802G>A	uc003plv.2	+	12	1649	c.1557G>A	c.(1555-1557)ACG>ACA	p.T519T	SLC35A1_uc003plx.2_RNA|C6orf165_uc003plw.2_Silent_p.T331T|C6orf165_uc010kbv.1_RNA	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	519										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		GCACACAGACGAATACACACA	0.328													15	43					0	0	1	0	0	
RARS2	57038	broad.mit.edu	37	6	88231241	88231241	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:88231241C>A	uc003pme.2	-	12	1036	c.976G>T	c.(976-978)GAT>TAT	p.D326Y	RARS2_uc003pmb.2_Missense_Mutation_p.D151Y|RARS2_uc003pmc.2_Missense_Mutation_p.D151Y|RARS2_uc003pmd.2_5'UTR|RARS2_uc003pmf.2_RNA	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	arginyl-tRNA synthetase 2, mitochondrial	326					arginyl-tRNA aminoacylation	mitochondrial matrix	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		GCTGCAAGATCTCTGAAACAA	0.323													22	55					2.89027e-11	3.162e-11	1	1	0	
AKIRIN2	55122	broad.mit.edu	37	6	88387650	88387650	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:88387650C>A	uc003pmk.2	-	3	998	c.415G>T	c.(415-417)GAA>TAA	p.E139*		NM_018064	NP_060534	Q53H80	AKIR2_HUMAN	akirin 2	139					innate immune response|transcription, DNA-dependent	transcriptional repressor complex					0						AAGGGCTGTTCTTTTTTTAAT	0.373													39	55					3.78316e-11	4.13718e-11	1	1	0	
PNRC1	10957	broad.mit.edu	37	6	89790697	89790697	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:89790697C>A	uc003pmv.2	+	1	269	c.84C>A	c.(82-84)TAC>TAA	p.Y28*	PNRC1_uc003pmu.2_Nonsense_Mutation_p.Y28*|PNRC1_uc003pmx.2_5'Flank	NM_006813	NP_006804	Q12796	PNRC1_HUMAN	proline-rich nuclear receptor coactivator 1	28					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding				0		all_cancers(76;3.64e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.102)		CCCGAGGTTACTTTGGGGCCC	0.667										Multiple Myeloma(7;0.094)			9	49					7.48243e-07	7.81738e-07	1	1	0	
ANKRD6	22881	broad.mit.edu	37	6	90323556	90323556	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:90323556T>C	uc003pni.3	+	7	903	c.562T>C	c.(562-564)TCC>CCC	p.S188P	ANKRD6_uc003pne.3_Missense_Mutation_p.S188P|ANKRD6_uc003pnf.3_Missense_Mutation_p.S188P|ANKRD6_uc011dzy.1_Missense_Mutation_p.S188P|ANKRD6_uc010kcd.2_Missense_Mutation_p.S155P|LYRM2_uc010kce.1_Intron|LYRM2_uc003png.2_Intron|ANKRD6_uc003pnh.3_5'UTR	NM_014942	NP_055757	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	188	ANK 6.						protein binding			ovary(2)|pancreas(1)	3		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		TAATCACTTGTCCATCATTAG	0.468													12	33					0	0	1	0	0	
MDN1	23195	broad.mit.edu	37	6	90361988	90361988	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:90361988C>A	uc003pnn.1	-	95	15954	c.15838G>T	c.(15838-15840)GAT>TAT	p.D5280Y		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	5280					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TCATTGACATCTTTTAAAAAG	0.458													24	61					7.33532e-06	7.59587e-06	1	1	0	
MDN1	23195	broad.mit.edu	37	6	90434994	90434994	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:90434994A>C	uc003pnn.1	-	38	5710	c.5594T>G	c.(5593-5595)TTT>TGT	p.F1865C		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1865					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CTGACACCCAAAAATCTTCGT	0.448													38	78					0	0	1	0	0	
MDN1	23195	broad.mit.edu	37	6	90448144	90448144	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:90448144C>A	uc003pnn.1	-	33	4740	c.4624G>T	c.(4624-4626)GAA>TAA	p.E1542*		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1542					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CACCATATTTCTGTAAACCGG	0.383													34	65					3.90053e-15	4.43362e-15	1	1	0	
MDN1	23195	broad.mit.edu	37	6	90450000	90450000	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:90450000G>T	uc003pnn.1	-	32	4662	c.4546C>A	c.(4546-4548)CGT>AGT	p.R1516S		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1516					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GCTAGAATACGAAATTTTTTC	0.408													34	84					2.20474e-14	2.4888e-14	1	1	0	
CASP8AP2	9994	broad.mit.edu	37	6	90578381	90578381	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:90578381A>T	uc003pnr.2	+	8	5568	c.5372A>T	c.(5371-5373)GAG>GTG	p.E1791V	CASP8AP2_uc003pns.2_Intron|CASP8AP2_uc003pnt.2_Missense_Mutation_p.E1791V|CASP8AP2_uc011dzz.1_Missense_Mutation_p.E1791V	NM_001137667	NP_001131139	Q9UKL3	C8AP2_HUMAN	caspase 8 associated protein 2	1791	NCOA2-binding.				cell cycle|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|nucleus	caspase activator activity|death receptor binding|transcription corepressor activity			ovary(2)	2		all_cancers(76;3.64e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;4.69e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0953)		TGCATTGTTGAGGAAACCTAT	0.408													17	44					0	0	1	0	0	
GJA10	84694	broad.mit.edu	37	6	90604936	90604936	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:90604936G>A	uc011eaa.1	+	1	749	c.749G>A	c.(748-750)GGC>GAC	p.G250D		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	250	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		AGCAGTGAGGGCATTGAGGAT	0.398													42	86					0	0	1	0	0	
MAP3K7	6885	broad.mit.edu	37	6	91229036	91229036	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:91229036T>C	uc003pnz.1	-	15	1627	c.1465A>G	c.(1465-1467)ACC>GCC	p.T489A	MAP3K7_uc003pny.1_Missense_Mutation_p.T26A|MAP3K7_uc003poa.1_Missense_Mutation_p.T489A|MAP3K7_uc003pob.1_Missense_Mutation_p.T462A|MAP3K7_uc003poc.1_Missense_Mutation_p.T462A	NM_145331	NP_663304	O43318	M3K7_HUMAN	mitogen-activated protein kinase kinase kinase 7	489					activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|histone H3 acetylation|I-kappaB phosphorylation|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytosol|endosome membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)	6		all_cancers(76;6.4e-08)|Acute lymphoblastic leukemia(125;1.43e-09)|Prostate(29;9.32e-09)|all_hematologic(105;3.69e-06)|all_epithelial(107;0.000187)|Ovarian(999;0.0164)		OV - Ovarian serous cystadenocarcinoma(136;2.05e-11)|all cancers(137;3.25e-11)|GBM - Glioblastoma multiforme(226;0.0416)|BRCA - Breast invasive adenocarcinoma(108;0.0429)		GATCCATTGGTATCTGGAATT	0.328													19	38					0	0	1	0	0	
FHL5	9457	broad.mit.edu	37	6	97052727	97052727	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:97052727C>T	uc003pos.1	+	4	666	c.261C>T	c.(259-261)CGC>CGT	p.R87R	FHL5_uc003pot.1_Silent_p.R87R	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	87	LIM zinc-binding 1.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		AGGATGAGCGCCTGCTGTGCA	0.522													40	69					0	0	1	0	0	
GPR63	81491	broad.mit.edu	37	6	97246403	97246403	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:97246403C>T	uc010kcl.2	-	3	1683	c.1205G>A	c.(1204-1206)CGA>CAA	p.R402Q	GPR63_uc003pou.2_Missense_Mutation_p.R402Q	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	402	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		ACGTATCCGTCGCTTTGTGTG	0.473													32	57					0	0	1	0	0	
KLHL32	114792	broad.mit.edu	37	6	97424044	97424044	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:97424044C>A	uc010kcm.1	+	3	667	c.195C>A	c.(193-195)GAC>GAA	p.D65E	KLHL32_uc003poy.2_Missense_Mutation_p.D65E|KLHL32_uc011ead.1_Missense_Mutation_p.D65E|KLHL32_uc003poz.2_5'UTR|KLHL32_uc011eae.1_Missense_Mutation_p.D65E	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	65	BTB.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		CATGCAGTGACTATTTCCGGG	0.448													17	59					0.000566183	0.000576314	1	1	0	
KLHL32	114792	broad.mit.edu	37	6	97562324	97562324	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:97562324C>A	uc010kcm.1	+	7	1765	c.1293C>A	c.(1291-1293)TCC>TCA	p.S431S	KLHL32_uc003poy.2_Silent_p.S431S|KLHL32_uc011ead.1_Silent_p.S395S|KLHL32_uc003poz.2_Intron|KLHL32_uc011eae.1_Silent_p.S362S|KLHL32_uc003ppa.2_Intron	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	431	Kelch 3.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		TTGTTCAGTCCTTTGACAGAT	0.438													37	64					2.6416e-12	2.92235e-12	1	1	0	
FBXL4	26235	broad.mit.edu	37	6	99374803	99374803	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:99374803C>T	uc003ppf.1	-	3	420	c.62G>A	c.(61-63)CGC>CAC	p.R21H	FBXL4_uc003ppg.1_Missense_Mutation_p.R21H|FBXL4_uc003pph.1_5'UTR	NM_012160	NP_036292	Q9UKA2	FBXL4_HUMAN	F-box and leucine-rich repeat protein 4	21					ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex				skin(2)	2		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0413)		CCTGGCTCGGCGCCGAAGGCA	0.448													70	106					0	0	1	0	0	
C6orf168	84553	broad.mit.edu	37	6	99771429	99771429	+	Silent	SNP	C	T	T	rs144270064	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:99771429C>T	uc003ppj.3	-	4	997	c.714G>A	c.(712-714)ACG>ACA	p.T238T	C6orf168_uc003ppi.3_Intron	NM_032511	NP_115900	Q5TGI0	CF168_HUMAN	hypothetical protein LOC84553	238										ovary(2)|central_nervous_system(1)	3		all_cancers(76;1.63e-06)|Acute lymphoblastic leukemia(125;5.12e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00898)|Colorectal(196;0.0699)|Lung NSC(302;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.073)		CAATTCCTTTCGTTATGTGGC	0.537													16	27					0	0	1	0	0	
COQ3	51805	broad.mit.edu	37	6	99825356	99825356	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:99825356T>C	uc003ppk.2	-	4	419	c.392A>G	c.(391-393)AAT>AGT	p.N131S		NM_017421	NP_059117	Q9NZJ6	COQ3_HUMAN	hexaprenyldihydroxybenzoate methyltransferase	131					glycerol metabolic process|ubiquinone biosynthetic process	mitochondrial matrix	2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity|3-demethylubiquinone-9 3-O-methyltransferase activity|hexaprenyldihydroxybenzoate methyltransferase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0625)		TTTCAGAAGATTGTCCCTTTT	0.348													11	27					0	0	1	0	0	
SFRS18	25957	broad.mit.edu	37	6	99852513	99852513	+	Silent	SNP	G	A	A	rs143393166	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:99852513G>A	uc003ppo.3	-	9	1296	c.1068C>T	c.(1066-1068)TAC>TAT	p.Y356Y	SFRS18_uc003ppp.3_Silent_p.Y356Y|SFRS18_uc011eag.1_Silent_p.Y356Y	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	356						nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		CTTTGGCTACGTAATAAATTT	0.353													19	41					0	0	1	0	0	
SFRS18	25957	broad.mit.edu	37	6	99862453	99862453	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:99862453T>C	uc003ppo.3	-	3	311	c.83A>G	c.(82-84)GAT>GGT	p.D28G	SFRS18_uc003ppp.3_Missense_Mutation_p.D28G|SFRS18_uc011eag.1_Missense_Mutation_p.D28G|SFRS18_uc003ppr.2_Missense_Mutation_p.D28G|SFRS18_uc003ppt.2_Missense_Mutation_p.D28G|SFRS18_uc003pps.2_Missense_Mutation_p.D28G	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	28	Gln-rich.					nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		CTTACTTGGATCCTGTTGGTG	0.443													27	49					0	0	1	0	0	
USP45	85015	broad.mit.edu	37	6	99885256	99885256	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:99885256T>G	uc003ppx.2	-	17	2713	c.2180A>C	c.(2179-2181)AAA>ACA	p.K727T	USP45_uc003ppv.2_RNA|USP45_uc003ppw.2_Missense_Mutation_p.K407T	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	ubiquitin specific peptidase 45	727					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|breast(1)	2		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		GTAGAGAACTTTATCTCCCAC	0.358													15	40					0	0	1	0	0	
USP45	85015	broad.mit.edu	37	6	99891518	99891518	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:99891518A>C	uc003ppx.2	-	15	2529	c.1996T>G	c.(1996-1998)TAT>GAT	p.Y666D	USP45_uc003ppv.2_RNA|USP45_uc003ppw.2_Missense_Mutation_p.Y346D	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	ubiquitin specific peptidase 45	666					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|breast(1)	2		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		GCATTAGTATAAACTCCTTCT	0.289													10	34					0	0	1	0	0	
USP45	85015	broad.mit.edu	37	6	99956550	99956550	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:99956550C>T	uc003ppx.2	-	3	742	c.209G>A	c.(208-210)AGA>AAA	p.R70K	USP45_uc003ppw.2_5'UTR|USP45_uc003ppy.2_RNA|USP45_uc010kcq.1_Missense_Mutation_p.R70K|USP45_uc003ppz.2_Missense_Mutation_p.R70K|USP45_uc003pqa.2_Missense_Mutation_p.R70K	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	ubiquitin specific peptidase 45	70	UBP-type.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|breast(1)	2		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		ATCATAGAATCTTCTTTCTTT	0.378													12	20					0	0	1	0	0	
MCHR2	84539	broad.mit.edu	37	6	100395798	100395798	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:100395798C>A	uc003pqh.1	-	3	547	c.232G>T	c.(232-234)GCT>TCT	p.A78S	MCHR2_uc003pqi.1_Missense_Mutation_p.A78S	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	78	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		ACCAAATCAGCCACAGCCAGG	0.468													28	58					3.73148e-12	4.12027e-12	1	1	0	
ASCC3	10973	broad.mit.edu	37	6	101091945	101091945	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:101091945T>C	uc003pqk.2	-	23	4023	c.3694A>G	c.(3694-3696)ATT>GTT	p.I1232V		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	1232	SEC63 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		GAATGATAAATATGATCATTT	0.303													49	74					0	0	1	0	0	
ASCC3	10973	broad.mit.edu	37	6	101166000	101166000	+	Missense_Mutation	SNP	C	T	T	rs142555952		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:101166000C>T	uc003pqk.2	-	12	2359	c.2030G>A	c.(2029-2031)CGA>CAA	p.R677Q	ASCC3_uc011eai.1_Missense_Mutation_p.R579Q|ASCC3_uc003pql.2_Missense_Mutation_p.R677Q	NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	677					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		AGGTACTGGTCGAAAACGGCC	0.333													24	44					0	0	1	0	0	
ASCC3	10973	broad.mit.edu	37	6	101246682	101246682	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:101246682A>G	uc003pqk.2	-	8	1631	c.1302T>C	c.(1300-1302)AAT>AAC	p.N434N	ASCC3_uc011eai.1_Silent_p.N336N|ASCC3_uc003pql.2_Silent_p.N434N	NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	434					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		AAAGCTTGTTATTCTCTCTTT	0.333													30	49					0	0	1	0	0	
ASCC3	10973	broad.mit.edu	37	6	101248368	101248368	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:101248368T>G	uc003pqk.2	-	6	1264	c.935A>C	c.(934-936)AAA>ACA	p.K312T	ASCC3_uc011eai.1_Missense_Mutation_p.K214T|ASCC3_uc003pql.2_Missense_Mutation_p.K312T	NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	312					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		TCCTAAAATTTTTTTACAATT	0.303													12	16					0	0	1	0	0	
GRIK2	2898	broad.mit.edu	37	6	102074270	102074270	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:102074270C>A	uc003pqp.3	+	3	548	c.299C>A	c.(298-300)TCT>TAT	p.S100Y	GRIK2_uc003pqn.2_Missense_Mutation_p.S100Y|GRIK2_uc003pqo.3_Missense_Mutation_p.S100Y|GRIK2_uc010kcw.2_Missense_Mutation_p.S100Y	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	100	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	GATCAGCTGTCTCTTGGGGTG	0.502													118	206					9.05284e-58	1.12844e-57	1	1	0	
GRIK2	2898	broad.mit.edu	37	6	102134199	102134199	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:102134199G>A	uc003pqp.3	+	6	1171	c.922G>A	c.(922-924)GAT>AAT	p.D308N	GRIK2_uc003pqn.2_Missense_Mutation_p.D308N|GRIK2_uc003pqo.3_Missense_Mutation_p.D308N|GRIK2_uc010kcw.2_Missense_Mutation_p.D308N	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	308	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	TCCGAAACCCGATTCAGGTTT	0.393													28	84					0	0	1	0	0	
HACE1	57531	broad.mit.edu	37	6	105224916	105224916	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:105224916G>A	uc003pqu.1	-	16	2025	c.1748C>T	c.(1747-1749)GCT>GTT	p.A583V	HACE1_uc010kcy.1_Missense_Mutation_p.A65V|HACE1_uc010kcz.1_Intron|HACE1_uc010kcx.1_5'UTR|HACE1_uc003pqt.1_Missense_Mutation_p.A236V	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	583	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		GAACCGTACAGCAATCCCTTG	0.333													26	25					0	0	1	0	0	
HACE1	57531	broad.mit.edu	37	6	105239404	105239404	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:105239404T>G	uc003pqu.1	-	11	1326	c.1049A>C	c.(1048-1050)AAA>ACA	p.K350T	HACE1_uc010kcy.1_5'UTR|HACE1_uc010kcz.1_Missense_Mutation_p.K350T	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	350					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		TCTTGGAGTTTTATTCCCATT	0.383													52	92					0	0	1	0	0	
BVES	11149	broad.mit.edu	37	6	105577274	105577274	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:105577274G>T	uc003pqw.2	-	3	488	c.331C>A	c.(331-333)CTT>ATT	p.L111I	BVES_uc003pqx.2_Missense_Mutation_p.L111I|BVES_uc003pqy.2_Missense_Mutation_p.L111I	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	blood vessel epicardial substance isoform 5	111	Helical; (Potential).				epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity				0		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				TTGTATAAAAGATACGACAGA	0.348													22	25					1.64113e-05	1.69216e-05	1	1	0	
POPDC3	64208	broad.mit.edu	37	6	105606497	105606497	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:105606497T>G	uc003prb.2	-	4	1126	c.724A>C	c.(724-726)AAA>CAA	p.K242Q	uc003pqz.2_Intron|POPDC3_uc003pra.2_RNA	NM_022361	NP_071756	Q9HBV1	POPD3_HUMAN	popeye protein 3	242						integral to membrane				skin(3)|ovary(2)	5		all_cancers(87;4.87e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0157)|Colorectal(196;0.202)|Lung NSC(302;0.238)				GCATAGAGTTTATCTGCAATG	0.393													90	155					0	0	1	0	0	
PREP	5550	broad.mit.edu	37	6	105816843	105816843	+	Missense_Mutation	SNP	C	T	T	rs145682559		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:105816843C>T	uc003prc.2	-	6	855	c.652G>A	c.(652-654)GAT>AAT	p.D218N		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	218					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	TCTGACTGATCGGTTCCCAAG	0.408													47	119					0	0	1	0	0	
PDSS2	57107	broad.mit.edu	37	6	107780297	107780297	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:107780297A>G	uc003prt.2	-	1	483	c.193T>C	c.(193-195)TCC>CCC	p.S65P	PDSS2_uc011eak.1_Intron|PDSS2_uc011eal.1_Missense_Mutation_p.S65P|PDSS2_uc003pru.2_Missense_Mutation_p.S65P|PDSS2_uc003prv.2_Missense_Mutation_p.S65P	NM_020381	NP_065114	Q86YH6	DLP1_HUMAN	prenyl diphosphate synthase, subunit 2	65					isoprenoid biosynthetic process|ubiquinone biosynthetic process	mitochondrion	protein heterodimerization activity			ovary(2)	2	Breast(9;0.0127)	all_cancers(87;3.63e-05)|Acute lymphoblastic leukemia(125;2.86e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.0108)|Colorectal(196;0.156)|Lung NSC(302;0.211)	BRCA - Breast invasive adenocarcinoma(8;0.0101)|all cancers(7;0.243)	BRCA - Breast invasive adenocarcinoma(108;0.112)|OV - Ovarian serous cystadenocarcinoma(136;0.173)|all cancers(137;0.191)		CTCATGAAGGACGTGGGGTAC	0.622											OREG0017595	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	49					0	0	1	0	0	
NR2E1	7101	broad.mit.edu	37	6	108499413	108499413	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:108499413C>T	uc003psg.2	+	5	1365	c.610C>T	c.(610-612)CCA>TCA	p.P204S		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	204	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		TAAGAGTGTGCCAGCCTTCTC	0.512													19	51					0	0	1	0	0	
ARMC2	84071	broad.mit.edu	37	6	109197433	109197433	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:109197433C>T	uc003pss.3	+	5	725	c.551C>T	c.(550-552)GCT>GTT	p.A184V	ARMC2_uc011eao.1_Missense_Mutation_p.A19V	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	184							binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		AAATCAAATGCTATTTGCCAC	0.368													28	61					0	0	1	0	0	
ARMC2	84071	broad.mit.edu	37	6	109286202	109286202	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:109286202G>T	uc003pss.3	+	17	2479	c.2305G>T	c.(2305-2307)GAT>TAT	p.D769Y	ARMC2_uc011eao.1_Missense_Mutation_p.D604Y	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	769	ARM 12.						binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		CTGTTTAAGAGATTTGGGTCC	0.333													75	139					2.9056e-39	3.59884e-39	1	1	0	
ZBTB24	9841	broad.mit.edu	37	6	109787482	109787482	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:109787482C>T	uc003ptl.1	-	7	1834	c.1666G>A	c.(1666-1668)GTA>ATA	p.V556I	MICAL1_uc011eaq.1_5'Flank|ZBTB24_uc011ear.1_RNA|ZBTB24_uc010kds.1_Missense_Mutation_p.V500I|ZBTB24_uc010kdt.1_RNA	NM_014797	NP_055612	O43167	ZBT24_HUMAN	zinc finger and BTB domain containing 24 isoform	556					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0154)|all cancers(137;0.0216)|OV - Ovarian serous cystadenocarcinoma(136;0.0242)|BRCA - Breast invasive adenocarcinoma(108;0.059)		GAATCGGTTACGAGAAGCTGA	0.468													40	92					0	0	1	0	0	
AKD1	221264	broad.mit.edu	37	6	109814771	109814771	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:109814771A>C	uc003ptn.2	-	41	5614	c.5537T>G	c.(5536-5538)TTT>TGT	p.F1846C	AKD1_uc011eas.1_Missense_Mutation_p.F231C	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1846					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						TTTGGGATTAAATGCTGTAGA	0.363													5	64					0	0	1	0	0	
AKD1	221264	broad.mit.edu	37	6	109816641	109816641	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:109816641G>A	uc003ptn.2	-	39	5395	c.5318C>T	c.(5317-5319)TCG>TTG	p.S1773L	AKD1_uc011eas.1_Missense_Mutation_p.S158L	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1773					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						TTTCAGTGGCGACCTAAGAAC	0.408													17	42					0	0	1	0	0	
AKD1	221264	broad.mit.edu	37	6	109820263	109820263	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:109820263G>T	uc003ptn.2	-	36	5107	c.5030C>A	c.(5029-5031)TCT>TAT	p.S1677Y	AKD1_uc011eas.1_Missense_Mutation_p.S62Y	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1677					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						TTTTTCCTGAGAACTCATTTT	0.398													7	28					2.17888e-05	2.24492e-05	1	1	0	
FIG4	9896	broad.mit.edu	37	6	110048403	110048403	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:110048403C>T	uc003ptt.2	+	4	596	c.381C>T	c.(379-381)GTC>GTT	p.V127V	FIG4_uc011eau.1_Intron	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	127					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		TCTATAAGGTCGAAGATACAA	0.353													52	141					0	0	1	0	0	
WASF1	8936	broad.mit.edu	37	6	110424718	110424718	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:110424718A>C	uc003ptv.1	-	9	1593	c.756T>G	c.(754-756)CTT>CTG	p.L252L	WASF1_uc003ptw.1_Silent_p.L252L|WASF1_uc003ptx.1_Silent_p.L252L|WASF1_uc003pty.1_Silent_p.L252L	NM_003931	NP_003922	Q92558	WASF1_HUMAN	Wiskott-Aldrich syndrome protein family member	252					actin filament polymerization|cellular component movement	actin cytoskeleton	actin binding				0		all_cancers(87;1.18e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		OV - Ovarian serous cystadenocarcinoma(136;0.0364)|Epithelial(106;0.051)|all cancers(137;0.0687)		GCAAGGCAGAAAGTGAGTAAG	0.373													37	75					0	0	1	0	0	
GTF3C6	112495	broad.mit.edu	37	6	111288852	111288852	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:111288852G>T	uc003pum.2	+	6	711	c.501G>T	c.(499-501)GAG>GAT	p.E167D		NM_138408	NP_612417	Q969F1	TF3C6_HUMAN	general transcription factor IIIC, polypeptide	167						transcription factor TFIIIC complex	DNA binding|protein binding				0		all_cancers(87;0.00328)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|Colorectal(196;0.0466)|all_epithelial(87;0.0575)		OV - Ovarian serous cystadenocarcinoma(136;0.105)|all cancers(137;0.179)|Epithelial(106;0.186)		AAGAGGAAGAGATTCAAATGA	0.393													51	94					8.44121e-28	1.02551e-27	1	1	0	
SLC16A10	117247	broad.mit.edu	37	6	111540115	111540115	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:111540115C>T	uc003pus.2	+	5	1360	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	SLC16A10_uc003put.2_Silent_p.F81F	NM_018593	NP_061063	Q8TF71	MOT10_HUMAN	solute carrier family 16, member 10	395	Cytoplasmic (Potential).				aromatic amino acid transport|cellular nitrogen compound metabolic process|ion transport	basolateral plasma membrane|integral to membrane	amino acid transmembrane transporter activity				0		all_cancers(87;0.00172)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0313)|Colorectal(196;0.0466)		OV - Ovarian serous cystadenocarcinoma(136;0.0703)|Epithelial(106;0.12)|all cancers(137;0.132)		TGGGTCTCTTCGATGGATGCT	0.468													58	113					0	0	1	0	0	
REV3L	5980	broad.mit.edu	37	6	111680142	111680142	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:111680142C>A	uc003puy.3	-	17	7278	c.6955G>T	c.(6955-6957)GAC>TAC	p.D2319Y	REV3L_uc003pux.3_Missense_Mutation_p.D2241Y|REV3L_uc003puz.3_Missense_Mutation_p.D2241Y|REV3L_uc003pva.1_RNA	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	2319					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		CAGATTGGGTCAAATTCAGGA	0.388								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					38	72					2.40579e-17	2.7868e-17	1	1	0	
REV3L	5980	broad.mit.edu	37	6	111694807	111694807	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:111694807C>T	uc003puy.3	-	13	5074	c.4751G>A	c.(4750-4752)CGA>CAA	p.R1584Q	REV3L_uc003pux.3_Missense_Mutation_p.R1506Q|REV3L_uc003puz.3_Missense_Mutation_p.R1506Q	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1584					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TCTGGGAGTTCGAGGTTTTCT	0.353								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					103	208					0	0	1	0	0	
REV3L	5980	broad.mit.edu	37	6	111695509	111695509	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:111695509T>C	uc003puy.3	-	13	4372	c.4049A>G	c.(4048-4050)GAA>GGA	p.E1350G	REV3L_uc003pux.3_Missense_Mutation_p.E1272G|REV3L_uc003puz.3_Missense_Mutation_p.E1272G	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1350					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TAACGTTGATTCCTTTAGAGT	0.328								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					58	92					0	0	1	0	0	
REV3L	5980	broad.mit.edu	37	6	111709117	111709117	+	Splice_Site	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:111709117C>A	uc003puy.3	-	9	1271	c.948_splice	c.e9-1	p.V316_splice	REV3L_uc003pux.3_Splice_Site_p.V238_splice|REV3L_uc003puz.3_Splice_Site_p.V238_splice	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta						DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TGATAATGTTCTGCTTAATTA	0.358								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					22	39					3.08376e-08	3.26638e-08	1	1	0	
FYN	2534	broad.mit.edu	37	6	111995824	111995824	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:111995824A>C	uc003pvj.2	-	12	1623	c.1283T>G	c.(1282-1284)TTC>TGC	p.F428C	FYN_uc003pvi.2_Missense_Mutation_p.F373C|FYN_uc003pvk.2_Missense_Mutation_p.F428C|FYN_uc003pvh.2_Missense_Mutation_p.F425C	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	428	Protein kinase.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	CTTGATGGGGAACTTTGCACC	0.542													48	101					0	0	1	0	0	
WISP3	8838	broad.mit.edu	37	6	112389552	112389552	+	Missense_Mutation	SNP	G	A	A	rs146519527		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:112389552G>A	uc003pvm.2	+	5	844	c.734G>A	c.(733-735)AGA>AAA	p.R245K	WISP3_uc003pvn.2_RNA|WISP3_uc003pvo.2_Missense_Mutation_p.R263K	NM_003880	NP_003871	O95389	WISP3_HUMAN	WNT1 inducible signaling pathway protein 3	245	TSP type-1.				cell-cell signaling|regulation of cell growth|signal transduction	extracellular region|soluble fraction	growth factor activity|insulin-like growth factor binding				0		all_cancers(87;0.000196)|Acute lymphoblastic leukemia(125;1.18e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0283)|OV - Ovarian serous cystadenocarcinoma(136;0.0613)|Epithelial(106;0.0827)|GBM - Glioblastoma multiforme(226;0.0972)|BRCA - Breast invasive adenocarcinoma(108;0.246)		AAAGAGAAAAGACTGTGTTAC	0.343													8	29					0	0	1	0	0	
TUBE1	51175	broad.mit.edu	37	6	112397530	112397530	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:112397530T>C	uc003pvq.2	-	7	745	c.631A>G	c.(631-633)AAT>GAT	p.N211D	TUBE1_uc003pvr.2_Missense_Mutation_p.N136D	NM_016262	NP_057346	Q9UJT0	TBE_HUMAN	tubulin, epsilon 1	211					centrosome cycle|microtubule-based movement|protein polymerization	microtubule|pericentriolar material	GTP binding|GTPase activity|structural constituent of cytoskeleton			ovary(1)	1		all_cancers(87;0.0101)|all_hematologic(75;0.000258)|Colorectal(196;0.0466)|all_epithelial(87;0.1)		all cancers(137;0.0217)|OV - Ovarian serous cystadenocarcinoma(136;0.0613)|Epithelial(106;0.0636)|GBM - Glioblastoma multiforme(226;0.0972)|BRCA - Breast invasive adenocarcinoma(108;0.246)		CTTACTTGATTGTCAATGGGC	0.338													23	65					0	0	1	0	0	
LAMA4	3910	broad.mit.edu	37	6	112496523	112496523	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:112496523G>A	uc003pvu.2	-	11	1658	c.1349C>T	c.(1348-1350)GCT>GTT	p.A450V	LAMA4_uc003pvv.2_Missense_Mutation_p.A443V|LAMA4_uc003pvt.2_Missense_Mutation_p.A443V	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	450	Domain II and I.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		ACGTTCGTAAGCCTCATCTGC	0.483													43	80					0	0	1	0	0	
LAMA4	3910	broad.mit.edu	37	6	112513010	112513010	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:112513010G>A	uc003pvu.2	-	6	855	c.546C>T	c.(544-546)AGC>AGT	p.S182S	LAMA4_uc003pvv.2_Silent_p.S182S|LAMA4_uc003pvt.2_Silent_p.S182S	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	182	Laminin EGF-like 2.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		TCTTACAGGTGCTTCCAATGA	0.398													21	43					0	0	1	0	0	
COL10A1	1300	broad.mit.edu	37	6	116441409	116441409	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:116441409T>C	uc003pwm.2	-	3	1966	c.1870A>G	c.(1870-1872)ACC>GCC	p.T624A	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	624	Nonhelical region (NC1).|C1q.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		TCATCATAGGTGTACATTACA	0.463													51	68					0	0	1	0	0	
COL10A1	1300	broad.mit.edu	37	6	116441517	116441517	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:116441517T>G	uc003pwm.2	-	3	1858	c.1762A>C	c.(1762-1764)ATC>CTC	p.I588L	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	588	Nonhelical region (NC1).|C1q.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		CAAGTAAAGATTCCAGTCCTT	0.403													30	58					0	0	1	0	0	
FAM162B	221303	broad.mit.edu	37	6	117086337	117086337	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:117086337G>A	uc003pxi.2	-	2	401	c.254C>T	c.(253-255)TCG>TTG	p.S85L		NM_001085480	NP_001078949	Q5T6X4	F162B_HUMAN	hypothetical protein LOC221303	85						integral to membrane					0						CTCCTCCATCGATTTGAAACG	0.637													18	58					0	0	1	0	0	
GPRC6A	222545	broad.mit.edu	37	6	117127925	117127925	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:117127925G>A	uc003pxj.1	-	3	965	c.943C>T	c.(943-945)CCT>TCT	p.P315S	GPRC6A_uc003pxk.1_Intron|GPRC6A_uc003pxl.1_Missense_Mutation_p.P315S	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	315	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TTAACATTAGGAATGGTGGTA	0.363													44	111					0	0	1	0	0	
RFX6	222546	broad.mit.edu	37	6	117203536	117203536	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:117203536C>T	uc003pxm.2	+	4	574	c.511C>T	c.(511-513)CGC>TGC	p.R171C		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	171	RFX-type winged-helix.				glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TTAGACAATTCGCCAGAAGTT	0.403													13	45					0	0	1	0	0	
RFX6	222546	broad.mit.edu	37	6	117203581	117203581	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:117203581G>A	uc003pxm.2	+	4	619	c.556G>A	c.(556-558)GGC>AGC	p.G186S		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	186	RFX-type winged-helix.				glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TGGAACAAGAGGCCATTCAAA	0.383													17	55					0	0	1	0	0	
ROS1	6098	broad.mit.edu	37	6	117641051	117641051	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:117641051C>T	uc003pxp.1	-	36	6119	c.5920G>A	c.(5920-5922)GAA>AAA	p.E1974K	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Missense_Mutation_p.E300K	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1974	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ACTTTGATTTCTCCACTTCCA	0.413			T	GOPC|ROS1	glioblastoma|NSCLC								32	109					0	0	1	0	0	
ROS1	6098	broad.mit.edu	37	6	117647545	117647545	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:117647545T>G	uc003pxp.1	-	33	5598	c.5399A>C	c.(5398-5400)AAT>ACT	p.N1800T	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1800	Fibronectin type-III 9.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CCACCTTAAATTCTGGTTCTG	0.323			T	GOPC|ROS1	glioblastoma|NSCLC								16	26					0	0	1	0	0	
ROS1	6098	broad.mit.edu	37	6	117658374	117658374	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:117658374C>A	uc003pxp.1	-	31	5408	c.5209G>T	c.(5209-5211)GAA>TAA	p.E1737*	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1737	Fibronectin type-III 8.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GTGCTATTTTCTCCCGTCTTA	0.358			T	GOPC|ROS1	glioblastoma|NSCLC								24	49					9.57634e-11	1.04293e-10	1	1	0	
SLC35F1	222553	broad.mit.edu	37	6	118588164	118588164	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:118588164G>T	uc003pxx.3	+	4	685	c.484G>T	c.(484-486)GAC>TAC	p.D162Y	SLC35F1_uc003pxy.1_5'UTR	NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	162	Helical; (Potential).				transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		ATAGCTCCTGGACTGTTTTGT	0.473													88	217					1.19196e-48	1.48263e-48	1	1	0	
C6orf204	387119	broad.mit.edu	37	6	118844970	118844970	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:118844970G>A	uc003pxz.1	-	4	1722	c.1134C>T	c.(1132-1134)ATC>ATT	p.I378I	C6orf204_uc003pya.1_Silent_p.I381I|C6orf204_uc003pyb.2_Silent_p.I378I|C6orf204_uc011ebj.1_Silent_p.I276I|C6orf204_uc003pyc.2_Silent_p.I381I	NM_001042475	NP_001035940	Q5SZL2	CF204_HUMAN	chromosome 6 open reading frame 204 isoform a	378						centrosome				breast(1)	1		all_cancers(87;0.0814)|all_epithelial(87;0.115)		GBM - Glioblastoma multiforme(226;0.0114)|all cancers(137;0.035)|OV - Ovarian serous cystadenocarcinoma(136;0.0618)		CTCACCGATCGATTACAATTT	0.308													15	46					0	0	1	0	0	
ASF1A	25842	broad.mit.edu	37	6	119221986	119221986	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:119221986A>C	uc011ebn.1	+	2	502	c.165A>C	c.(163-165)CAA>CAC	p.Q55H		NM_014034	NP_054753	Q9Y294	ASF1A_HUMAN	ASF1 anti-silencing function 1 homolog A	55	Interaction with histone H3, CHAF1B, and HIRA.				chromatin modification|DNA repair|loss of chromatin silencing|nucleosome assembly|transcription, DNA-dependent	chromatin remodeling complex	chromatin binding|histone binding				0		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0633)|OV - Ovarian serous cystadenocarcinoma(136;0.188)		AATACGATCAAGTTTTAGACT	0.348													59	110					0	0	1	0	0	
ASF1A	25842	broad.mit.edu	37	6	119226904	119226904	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:119226904G>T	uc011ebn.1	+	3	650	c.313G>T	c.(313-315)GAA>TAA	p.E105*		NM_014034	NP_054753	Q9Y294	ASF1A_HUMAN	ASF1 anti-silencing function 1 homolog A	105	Interaction with histone H3, CHAF1B, and HIRA.				chromatin modification|DNA repair|loss of chromatin silencing|nucleosome assembly|transcription, DNA-dependent	chromatin remodeling complex	chromatin binding|histone binding				0		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0633)|OV - Ovarian serous cystadenocarcinoma(136;0.188)		TCGAGGACAAGAATTTATTAG	0.358													82	53					5.52753e-52	6.88169e-52	1	1	0	
FAM184A	79632	broad.mit.edu	37	6	119345901	119345901	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:119345901T>G	uc003pyj.2	-	2	585	c.237A>C	c.(235-237)GAA>GAC	p.E79D	FAM184A_uc003pyk.3_5'UTR|FAM184A_uc003pyl.3_5'UTR	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	79	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						TTTGTTGAATTTCTTCTTCAT	0.323													19	48					0	0	1	0	0	
MAN1A1	4121	broad.mit.edu	37	6	119510876	119510876	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:119510876A>G	uc003pym.1	-	10	1941	c.1499T>C	c.(1498-1500)CTC>CCC	p.L500P		NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	500	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		TTCAGCCCCGAGTTCAAGGTA	0.498													56	95					0	0	1	0	0	
C6orf170	221322	broad.mit.edu	37	6	121642797	121642797	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:121642797C>A	uc003pyo.1	-	2	367	c.299G>T	c.(298-300)AGA>ATA	p.R100I	C6orf170_uc003pyq.1_RNA	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	100					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		TTCTTGAGTTCTTTTAGTGAC	0.274													68	142					2.48295e-43	3.08233e-43	1	1	0	
HSF2	3298	broad.mit.edu	37	6	122753198	122753198	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:122753198G>A	uc003pyu.2	+	13	1631	c.1444G>A	c.(1444-1446)GAA>AAA	p.E482K	HSF2_uc003pyv.2_Missense_Mutation_p.E464K	NM_004506	NP_004497	Q03933	HSF2_HUMAN	heat shock transcription factor 2 isoform a	482					response to stress|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0				OV - Ovarian serous cystadenocarcinoma(136;0.00371)|all cancers(137;0.0299)|GBM - Glioblastoma multiforme(226;0.0586)		TAAACCCATAGAAGTTGATGA	0.473													47	107					0	0	1	0	0	
SMPDL3A	10924	broad.mit.edu	37	6	123124953	123124953	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:123124953A>C	uc003pzg.2	+	5	1234	c.713A>C	c.(712-714)AAC>ACC	p.N238T	SMPDL3A_uc003pzh.2_Missense_Mutation_p.N107T	NM_006714	NP_006705	Q92484	ASM3A_HUMAN	acid sphingomyelinase-like phosphodiesterase 3A	238					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|protein binding|sphingomyelin phosphodiesterase activity				0				GBM - Glioblastoma multiforme(226;0.236)		AGTACATTGAACAACTCTCAG	0.398													36	99					0	0	1	0	0	
TRDN	10345	broad.mit.edu	37	6	123699033	123699033	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:123699033C>A	uc003pzj.1	-	17	1219	c.1197G>T	c.(1195-1197)AAG>AAT	p.K399N	TRDN_uc003pzk.1_Missense_Mutation_p.K400N|TRDN_uc003pzl.1_Missense_Mutation_p.K400N|TRDN_uc010kem.1_5'UTR	NM_006073	NP_006064	Q13061	TRDN_HUMAN	triadin	399	Lumenal.				muscle contraction	integral to membrane|plasma membrane|sarcoplasmic reticulum membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.184)		GTTTTTCTTTCTTTTCCTGTT	0.234													4	10					0.00024832	0.000253393	1	1	0	
RSPO3	84870	broad.mit.edu	37	6	127469858	127469858	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:127469858T>G	uc003qar.2	+	2	453	c.163T>G	c.(163-165)TTG>GTG	p.L55V	RSPO3_uc003qas.1_Missense_Mutation_p.L55V	NM_032784	NP_116173	Q9BXY4	RSPO3_HUMAN	R-spondin 3 precursor	55	FU 1.					extracellular region	heparin binding				0				GBM - Glioblastoma multiforme(226;0.0555)		CAATGGATGTTTGTCATGTAA	0.423													30	71					0	0	1	0	0	
RNF146	81847	broad.mit.edu	37	6	127608756	127608756	+	Missense_Mutation	SNP	G	A	A	rs143742264		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:127608756G>A	uc003qav.2	+	3	1157	c.998G>A	c.(997-999)CGA>CAA	p.R333Q	RNF146_uc003qat.2_Missense_Mutation_p.R332Q|RNF146_uc003qau.2_Missense_Mutation_p.R332Q|RNF146_uc003qaw.2_Missense_Mutation_p.R332Q	NM_030963	NP_112225	Q9NTX7	RN146_HUMAN	ring finger protein 146	333					positive regulation of canonical Wnt receptor signaling pathway|protein autoubiquitination|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol	poly-ADP-D-ribose binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1				GBM - Glioblastoma multiforme(226;0.0407)|all cancers(137;0.2)		GGAACTGATCGATCAGTAGCA	0.463													32	80					0	0	1	0	0	
C6orf174	387104	broad.mit.edu	37	6	127797590	127797590	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:127797590G>A	uc003qbd.2	-	6	2446	c.1581C>T	c.(1579-1581)TGC>TGT	p.C527C	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	527	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		ACTGCAGCTGGCACTTCAGAT	0.408													43	64					0	0	1	0	0	
THEMIS	387357	broad.mit.edu	37	6	128150816	128150816	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:128150816C>A	uc003qbi.2	-	4	833	c.514G>T	c.(514-516)GAA>TAA	p.E172*	THEMIS_uc010kfa.2_Nonsense_Mutation_p.E75*|THEMIS_uc011ebt.1_Nonsense_Mutation_p.E172*|THEMIS_uc010kfb.2_Nonsense_Mutation_p.E137*	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	172	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TCGTAGAATTCTCCTTCTTGT	0.368													41	100					2.66277e-13	2.97347e-13	1	1	0	
THEMIS	387357	broad.mit.edu	37	6	128176253	128176253	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:128176253T>C	uc003qbi.2	-	3	491	c.172A>G	c.(172-174)AAG>GAG	p.K58E	THEMIS_uc010kfa.2_5'UTR|THEMIS_uc011ebt.1_Missense_Mutation_p.K58E|THEMIS_uc010kfb.2_Missense_Mutation_p.K23E	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	58	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						GCTATGATCTTCTTAACTTTG	0.353													28	45					0	0	1	0	0	
LAMA2	3908	broad.mit.edu	37	6	129380932	129380932	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:129380932G>T	uc003qbn.2	+	3	392	c.287G>T	c.(286-288)AGA>ATA	p.R96I	LAMA2_uc003qbo.2_Missense_Mutation_p.R96I	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	96	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TCAATAGAGAGACACCCGATT	0.333													15	54					2.31682e-05	2.38585e-05	1	1	0	
LAMA2	3908	broad.mit.edu	37	6	129826403	129826403	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:129826403G>T	uc003qbn.2	+	60	8711	c.8606G>T	c.(8605-8607)AGA>ATA	p.R2869I	LAMA2_uc003qbo.2_Missense_Mutation_p.R2865I|uc003qbq.2_Intron	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2869	Laminin G-like 4.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GCTTCCAACAGAACCATCAGT	0.413													24	59					3.08376e-08	3.26638e-08	1	1	0	
C6orf191	253582	broad.mit.edu	37	6	130154651	130154651	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:130154651A>C	uc003qbs.2	-	4	356	c.273T>G	c.(271-273)GAT>GAG	p.D91E		NM_001010876	NP_001010876	Q5VVB8	CF191_HUMAN	hypothetical protein LOC253582	91						integral to membrane				large_intestine(1)	1				GBM - Glioblastoma multiforme(226;0.0387)|all cancers(137;0.115)|OV - Ovarian serous cystadenocarcinoma(155;0.131)		AAATAGCATAATCCCAAACCC	0.343													21	76					0	0	1	0	0	
SAMD3	154075	broad.mit.edu	37	6	130497126	130497126	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:130497126G>A	uc003qbv.2	-	9	1008	c.682C>T	c.(682-684)CGC>TGC	p.R228C	SAMD3_uc003qbx.2_Missense_Mutation_p.R228C|SAMD3_uc003qbw.2_Missense_Mutation_p.R228C|SAMD3_uc010kfg.1_3'UTR	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	228										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TATTTAAAGCGATCTTTGAGG	0.353													42	65					0	0	1	0	0	
SAMD3	154075	broad.mit.edu	37	6	130505666	130505666	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:130505666C>T	uc003qbv.2	-	7	812	c.486G>A	c.(484-486)GAG>GAA	p.E162E	SAMD3_uc003qbx.2_Silent_p.E162E|SAMD3_uc003qbw.2_Silent_p.E162E|SAMD3_uc010kfg.1_Silent_p.E162E|SAMD3_uc003qby.2_Silent_p.E162E|SAMD3_uc003qbz.1_Silent_p.E121E	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	162										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		GGCACTTCTGCTCTGCTAACA	0.443													19	30					0	0	1	0	0	
TMEM200A	114801	broad.mit.edu	37	6	130762121	130762121	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:130762121A>G	uc003qca.2	+	3	1425	c.554A>G	c.(553-555)TAC>TGC	p.Y185C	TMEM200A_uc010kfh.2_Missense_Mutation_p.Y185C|TMEM200A_uc010kfi.2_Missense_Mutation_p.Y185C|TMEM200A_uc003qcb.2_Missense_Mutation_p.Y185C	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	185	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		AACGGCATGTACACTGGTTTG	0.453													38	58					0	0	1	0	0	
TMEM200A	114801	broad.mit.edu	37	6	130762228	130762228	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:130762228C>T	uc003qca.2	+	3	1532	c.661C>T	c.(661-663)CGA>TGA	p.R221*	TMEM200A_uc010kfh.2_Nonsense_Mutation_p.R221*|TMEM200A_uc010kfi.2_Nonsense_Mutation_p.R221*|TMEM200A_uc003qcb.2_Nonsense_Mutation_p.R221*	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	221	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GAGCAGTTTTCGAATGGACAG	0.478													21	33					0	0	1	0	0	
EPB41L2	2037	broad.mit.edu	37	6	131276416	131276416	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:131276416T>G	uc003qch.2	-	3	716	c.534A>C	c.(532-534)AAA>AAC	p.K178N	EPB41L2_uc003qcg.1_Missense_Mutation_p.K178N|EPB41L2_uc011eby.1_Missense_Mutation_p.K178N|EPB41L2_uc003qci.2_Missense_Mutation_p.K178N|EPB41L2_uc010kfk.2_Missense_Mutation_p.K178N|EPB41L2_uc010kfl.1_Missense_Mutation_p.K178N	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	178					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CCTGTGTTTCTTTTACCTTCT	0.393													59	93					0	0	1	0	0	
MED23	9439	broad.mit.edu	37	6	131911481	131911481	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:131911481C>A	uc003qcs.1	-	27	3962	c.3788G>T	c.(3787-3789)AGA>ATA	p.R1263I	MED23_uc003qcq.2_Missense_Mutation_p.R1269I|MED23_uc003qcr.1_Missense_Mutation_p.R118I	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	1263					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		ACAACGAGTTCTCTCTTGCTG	0.303													18	44					5.35267e-07	5.59727e-07	1	1	0	
ENPP1	5167	broad.mit.edu	37	6	132179855	132179855	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:132179855A>C	uc011ecf.1	+	7	783	c.763A>C	c.(763-765)AAA>CAA	p.K255Q	ENPP1_uc003qcy.2_5'Flank	NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	255	Phosphodiesterase.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	ATATCCAACAAAAACTTTCCC	0.338													19	43					0	0	1	0	0	
MOXD1	26002	broad.mit.edu	37	6	132641802	132641802	+	Missense_Mutation	SNP	C	T	T	rs142592039	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:132641802C>T	uc003qdf.2	-	9	1430	c.1331G>A	c.(1330-1332)CGC>CAC	p.R444H	MOXD1_uc003qde.2_Missense_Mutation_p.R376H	NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	444	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		CGTGTTGTAGCGACACTCAGT	0.308													9	25					0	0	1	0	0	
EYA4	2070	broad.mit.edu	37	6	133827290	133827290	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:133827290T>G	uc003qec.3	+	14	1696	c.1238T>G	c.(1237-1239)ATT>AGT	p.I413S	EYA4_uc011ecq.1_Missense_Mutation_p.I359S|EYA4_uc011ecr.1_Missense_Mutation_p.I365S|EYA4_uc003qed.3_Missense_Mutation_p.I413S|EYA4_uc003qee.3_Missense_Mutation_p.I390S|EYA4_uc011ecs.1_Missense_Mutation_p.I419S|uc003qef.1_RNA|uc003qeg.1_RNA	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	413					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		GAAGAAATGATTTTTAATCTT	0.353													30	50					0	0	1	0	0	
AHI1	54806	broad.mit.edu	37	6	135752450	135752450	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:135752450G>T	uc003qgi.2	-	17	2653	c.2269C>A	c.(2269-2271)CAT>AAT	p.H757N	AHI1_uc003qgf.2_RNA|AHI1_uc003qgg.2_Missense_Mutation_p.H207N|AHI1_uc003qgh.2_Missense_Mutation_p.H757N|AHI1_uc003qgj.2_Missense_Mutation_p.H757N|AHI1_uc003qgk.3_RNA|AHI1_uc003qgl.3_Missense_Mutation_p.H757N	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	757	WD 4.					adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		TACATATGATGACCTATTTAA	0.348													5	10					0.217242	0.217534	1	1	0	
BCLAF1	9774	broad.mit.edu	37	6	136589344	136589344	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:136589344C>A	uc003qgx.1	-	10	2606	c.2353G>T	c.(2353-2355)GAA>TAA	p.E785*	BCLAF1_uc011edb.1_Nonsense_Mutation_p.E113*|BCLAF1_uc003qgw.1_Nonsense_Mutation_p.E612*|BCLAF1_uc003qgy.1_Nonsense_Mutation_p.E783*|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Nonsense_Mutation_p.E783*	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	785					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		CCTGAGTATTCTTTCATTTCA	0.383													43	151					1.48734e-19	1.74885e-19	1	1	0	
BCLAF1	9774	broad.mit.edu	37	6	136590593	136590593	+	Missense_Mutation	SNP	T	G	G	rs142580882		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:136590593T>G	uc003qgx.1	-	9	2454	c.2201A>C	c.(2200-2202)AAA>ACA	p.K734T	BCLAF1_uc011edb.1_5'Flank|BCLAF1_uc003qgw.1_Missense_Mutation_p.K561T|BCLAF1_uc003qgy.1_Missense_Mutation_p.K732T|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.K732T	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	734					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TTTGTAAGATTTGTATTCCTT	0.348													22	61					0	0	1	0	0	
BCLAF1	9774	broad.mit.edu	37	6	136597477	136597477	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:136597477C>A	uc003qgx.1	-	5	1439	c.1186G>T	c.(1186-1188)GAT>TAT	p.D396Y	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Missense_Mutation_p.D394Y|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.D394Y	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	396					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		CCTTCTGAATCATTAAACTTT	0.443													93	560					5.48297e-45	6.80965e-45	1	1	0	
MAP3K5	4217	broad.mit.edu	37	6	136888937	136888937	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:136888937T>C	uc003qhc.2	-	26	3954	c.3593A>G	c.(3592-3594)CAT>CGT	p.H1198R	MAP3K5_uc011edj.1_Missense_Mutation_p.H445R|MAP3K5_uc011edk.1_Missense_Mutation_p.H1044R	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1198					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		CTGTTCCTCATGGTCATCTTC	0.468													28	50					0	0	1	0	0	
MAP3K5	4217	broad.mit.edu	37	6	136904864	136904864	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:136904864C>T	uc003qhc.2	-	24	3601	c.3240G>A	c.(3238-3240)CCG>CCA	p.P1080P	MAP3K5_uc011edj.1_Silent_p.P327P|MAP3K5_uc011edk.1_Silent_p.P926P	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1080					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		ATTTTAGTTTCGGTTCTTCAG	0.448													34	61					0	0	1	0	0	
MAP3K5	4217	broad.mit.edu	37	6	136923031	136923031	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:136923031A>G	uc003qhc.2	-	20	3127	c.2766T>C	c.(2764-2766)GAT>GAC	p.D922D	MAP3K5_uc011edj.1_Silent_p.D169D|MAP3K5_uc011edk.1_Silent_p.D767D	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	922	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TCTTGTCAGGATCTGGTTCAA	0.408													35	55					0	0	1	0	0	
KIAA1244	57221	broad.mit.edu	37	6	138644882	138644882	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:138644882C>T	uc003qhu.2	+	30	4841	c.4841C>T	c.(4840-4842)GCG>GTG	p.A1614V		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1614					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CTGCAAGATGCGTTCTCTGCC	0.527													17	36					0	0	1	0	0	
KIAA1244	57221	broad.mit.edu	37	6	138655224	138655224	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:138655224G>A	uc003qhu.2	+	33	5241	c.5241G>A	c.(5239-5241)ACG>ACA	p.T1747T		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1747					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		AGGAAAAGACGATACAAGTGC	0.478													12	37					0	0	1	0	0	
REPS1	85021	broad.mit.edu	37	6	139241371	139241371	+	Silent	SNP	G	A	A	rs35695721	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:139241371G>A	uc003qii.2	-	12	2088	c.1509C>T	c.(1507-1509)TTC>TTT	p.F503F	REPS1_uc003qig.3_Silent_p.F476F|REPS1_uc011edr.1_Silent_p.F503F|REPS1_uc003qij.2_Silent_p.F476F|REPS1_uc003qik.2_Silent_p.F109F	NM_031922	NP_114128	Q96D71	REPS1_HUMAN	RALBP1 associated Eps domain containing 1	503						coated pit|plasma membrane	calcium ion binding|SH3 domain binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(68;0.000434)|OV - Ovarian serous cystadenocarcinoma(155;0.000548)		TACCAGAAGCGAATTTCACCG	0.328													49	68					0	0	1	0	0	
TXLNB	167838	broad.mit.edu	37	6	139564361	139564361	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:139564361C>T	uc011eds.1	-	10	1522	c.1357G>A	c.(1357-1359)GAA>AAA	p.E453K		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	453	Potential.					cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		TTGTGGAGTTCGTTTCTCTCT	0.438													17	38					0	0	1	0	0	
GPR126	57211	broad.mit.edu	37	6	142691792	142691792	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:142691792C>T	uc010khc.2	+	4	1342	c.931C>T	c.(931-933)CGA>TGA	p.R311*	GPR126_uc010khd.2_Nonsense_Mutation_p.R311*|GPR126_uc010khe.2_Nonsense_Mutation_p.R311*|GPR126_uc010khf.2_Nonsense_Mutation_p.R311*|GPR126_uc003qix.2_Nonsense_Mutation_p.R311*	NM_020455	NP_065188	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126 alpha 1	311	Pentaxin.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		TTATAACTTTCGACTTTGGAA	0.383													54	144					0	0	1	0	0	
HIVEP2	3097	broad.mit.edu	37	6	143082678	143082678	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:143082678G>T	uc003qjd.2	-	8	6286	c.5543C>A	c.(5542-5544)TCT>TAT	p.S1848Y		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1848	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		GTGTGCTTTAGATTTCATATG	0.358													52	120					3.07002e-29	3.74194e-29	1	1	0	
PHACTR2	9749	broad.mit.edu	37	6	144086472	144086472	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:144086472C>T	uc003qjq.3	+	6	866	c.736C>T	c.(736-738)CGT>TGT	p.R246C	PHACTR2_uc010khh.2_Missense_Mutation_p.R166C|PHACTR2_uc010khi.2_Missense_Mutation_p.R257C|PHACTR2_uc003qjr.3_Missense_Mutation_p.R177C	NM_014721	NP_055536	O75167	PHAR2_HUMAN	phosphatase and actin regulator 2 isoform 3	246							actin binding|protein phosphatase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(155;1.58e-05)|GBM - Glioblastoma multiforme(68;0.0386)		CACCTCATCTCGTCCCAAAGC	0.463													48	106					0	0	1	0	0	
UTRN	7402	broad.mit.edu	37	6	144808711	144808711	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:144808711G>A	uc003qkt.2	+	28	3942	c.3850G>A	c.(3850-3852)GCA>ACA	p.A1284T		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1284	Spectrin 9.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GCGCCACCCGGCAGATAATCG	0.458													48	91					0	0	1	0	0	
UTRN	7402	broad.mit.edu	37	6	144860536	144860536	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:144860536A>C	uc003qkt.2	+	44	6568	c.6476A>C	c.(6475-6477)AAA>ACA	p.K2159T		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	2159					muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GAAAGGGATAAAATTTCAGAA	0.328													26	48					0	0	1	0	0	
UTRN	7402	broad.mit.edu	37	6	144869983	144869983	+	Missense_Mutation	SNP	G	A	A	rs150069642		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:144869983G>A	uc003qkt.2	+	46	6895	c.6803G>A	c.(6802-6804)CGA>CAA	p.R2268Q		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	2268	Spectrin 15.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		ACCGTTTCCCGAATGAAAGTA	0.428													24	29					0	0	1	0	0	
FBXO30	84085	broad.mit.edu	37	6	146126324	146126324	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:146126324T>G	uc003qla.2	-	2	1417	c.1218A>C	c.(1216-1218)GTA>GTC	p.V406V	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	406	F-box.						ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		CTGATGTATCTACTGCTTTAT	0.403													77	182					0	0	1	0	0	
SHPRH	257218	broad.mit.edu	37	6	146266673	146266673	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:146266673G>A	uc003qlf.2	-	8	1821	c.1422C>T	c.(1420-1422)TAC>TAT	p.Y474Y	SHPRH_uc003qld.2_Silent_p.Y474Y|SHPRH_uc003qle.2_Silent_p.Y474Y|SHPRH_uc003qlg.1_Silent_p.Y30Y|SHPRH_uc003qlj.1_Silent_p.Y363Y	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	474	H15.				DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		GTTGAACATCGTATCTATATA	0.378													21	47					0	0	1	0	0	
STXBP5	134957	broad.mit.edu	37	6	147680279	147680279	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:147680279G>T	uc003qlz.2	+	23	2526	c.2365G>T	c.(2365-2367)GAA>TAA	p.E789*	STXBP5_uc010khz.1_Nonsense_Mutation_p.E753*|STXBP5_uc003qlx.2_RNA|STXBP5_uc003qly.2_Nonsense_Mutation_p.E444*	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	789					exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		CATTGACAAAGAATCCCGAGA	0.433													23	51					1.96895e-08	2.09068e-08	1	1	0	
STXBP5	134957	broad.mit.edu	37	6	147684753	147684753	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:147684753C>T	uc003qlz.2	+	24	2989	c.2828C>T	c.(2827-2829)TCG>TTG	p.S943L	STXBP5_uc010khz.1_Missense_Mutation_p.S907L|STXBP5_uc003qlx.2_RNA|STXBP5_uc003qly.2_Missense_Mutation_p.S598L	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	943	WD 13.				exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		ACAGAGACCTCGTTTGTGCTT	0.388													49	83					0	0	1	0	0	
STXBP5	134957	broad.mit.edu	37	6	147703987	147703987	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:147703987C>T	uc003qlz.2	+	27	3428	c.3267C>T	c.(3265-3267)GGC>GGT	p.G1089G	STXBP5_uc010khz.1_Silent_p.G1053G|STXBP5_uc003qlx.2_RNA|STXBP5_uc003qly.2_Silent_p.G744G	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	1089	v-SNARE coiled-coil homology.				exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		GCATTGAAGGCGTAAAAGGGG	0.488													52	100					0	0	1	0	0	
SASH1	23328	broad.mit.edu	37	6	148865654	148865654	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:148865654G>A	uc003qme.1	+	18	3523	c.3048G>A	c.(3046-3048)GCG>GCA	p.A1016A	SASH1_uc011eeb.1_Silent_p.A777A|SASH1_uc003qmf.1_Silent_p.A426A	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	1016	Pro-rich.						protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		GTCCCGATGCGCCATGCCTGC	0.672													25	12					0	0	1	0	0	
SUMO4	387082	broad.mit.edu	37	6	149721599	149721599	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:149721599A>G	uc003qml.2	+	1	105	c.72A>G	c.(70-72)GGA>GGG	p.G24G	TAB2_uc011eec.1_Intron|TAB2_uc003qmj.2_Intron|TAB2_uc003qmk.3_Intron	NM_001002255	NP_001002255	Q6EEV6	SUMO4_HUMAN	SMT3 suppressor of mif two 3 homolog 4	24	Ubiquitin-like.										0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;7.91e-12)|GBM - Glioblastoma multiforme(68;0.0282)		AGGTGGCGGGACAGGATGGTT	0.463													41	55					0	0	1	0	0	
PPIL4	85313	broad.mit.edu	37	6	149862082	149862082	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:149862082G>A	uc003qmo.1	-	4	347	c.317C>T	c.(316-318)TCT>TTT	p.S106F	PPIL4_uc010kic.2_RNA|PPIL4_uc003qmp.1_Missense_Mutation_p.S106F	NM_139126	NP_624311	Q8WUA2	PPIL4_HUMAN	peptidylprolyl isomerase-like 4	106	PPIase cyclophilin-type.				protein folding	nucleus	nucleotide binding|peptidyl-prolyl cis-trans isomerase activity|RNA binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.11e-11)|GBM - Glioblastoma multiforme(68;0.0885)		CCTAACCTGAGATCCATGTTG	0.393													47	52					0	0	1	0	0	
KATNA1	11104	broad.mit.edu	37	6	149954037	149954037	+	Missense_Mutation	SNP	T	G	G	rs146991684		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:149954037T>G	uc003qmr.1	-	2	223	c.178A>C	c.(178-180)AAT>CAT	p.N60H	KATNA1_uc003qms.2_Missense_Mutation_p.N60H|KATNA1_uc003qmt.2_Missense_Mutation_p.N60H|KATNA1_uc011eed.1_Missense_Mutation_p.N60H	NM_007044	NP_008975	O75449	KTNA1_HUMAN	katanin p60 subunit A 1	60	Interaction with microtubule.				cell division|interphase of mitotic cell cycle|mitosis	microtubule|microtubule organizing center|spindle pole	ATP binding|microtubule binding|microtubule-severing ATPase activity|protein heterodimerization activity			skin(1)	1		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;2.95e-12)|GBM - Glioblastoma multiforme(68;0.173)		GCTTCCACATTTATTTCCTGC	0.363													32	20					0	0	1	0	0	
LATS1	9113	broad.mit.edu	37	6	149983146	149983146	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:149983146T>G	uc003qmu.1	-	8	3660	c.3112A>C	c.(3112-3114)AAT>CAT	p.N1038H	LATS1_uc010kif.1_Missense_Mutation_p.N933H	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	1038	AGC-kinase C-terminal.				cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		GGATCAAAATTTGATGTATCT	0.358													20	80					0	0	1	0	0	
LATS1	9113	broad.mit.edu	37	6	149983213	149983213	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:149983213G>T	uc003qmu.1	-	8	3593	c.3045C>A	c.(3043-3045)TTC>TTA	p.F1015L	LATS1_uc010kif.1_Missense_Mutation_p.F910L	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	1015	AGC-kinase C-terminal.				cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		GGTCACTGGAGAAGTCAATTG	0.378													46	41					1.48734e-19	1.74885e-19	1	1	0	
PLEKHG1	57480	broad.mit.edu	37	6	151161391	151161391	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:151161391G>A	uc003qny.1	+	17	3829	c.3517G>A	c.(3517-3519)GCT>ACT	p.A1173T	PLEKHG1_uc011eem.1_Missense_Mutation_p.A1232T	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	1173					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		AGGGATCAGCGCTAAATCTCA	0.488													49	53					0	0	1	0	0	
MTHFD1L	25902	broad.mit.edu	37	6	151239797	151239797	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:151239797G>A	uc003qob.2	+	9	1245	c.977G>A	c.(976-978)CGA>CAA	p.R326Q	MTHFD1L_uc011een.1_RNA|MTHFD1L_uc011eeo.1_Missense_Mutation_p.R327Q|MTHFD1L_uc003qoc.2_Missense_Mutation_p.R274Q	NM_015440	NP_056255	Q6UB35	C1TM_HUMAN	methylenetetrahydrofolate dehydrogenase (NADP+	326	Methylenetetrahydrofolate dehydrogenase and cyclohydrolase.				folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity			ovary(3)|large_intestine(1)	4		Ovarian(120;0.128)		OV - Ovarian serous cystadenocarcinoma(155;8.7e-12)		GCAGCTCTGCGAATTCAGGTT	0.408													44	29					0	0	1	0	0	
AKAP12	9590	broad.mit.edu	37	6	151672532	151672532	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:151672532G>T	uc011eep.1	+	4	3246	c.3006G>T	c.(3004-3006)ATG>ATT	p.M1002I	AKAP12_uc003qoe.2_Missense_Mutation_p.M1002I|AKAP12_uc003qof.2_Missense_Mutation_p.M904I|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Missense_Mutation_p.M897I	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	1002					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		CCACAGAAATGGTGTCAGCAG	0.572													26	14					1.66031e-10	1.80435e-10	1	1	0	
C6orf97	80129	broad.mit.edu	37	6	151865837	151865837	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:151865837G>A	uc003qol.2	+	4	663	c.574G>A	c.(574-576)GAT>AAT	p.D192N		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	192	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		ATCAGATGAAGATTTAATTTT	0.378													32	35					0	0	1	0	0	
C6orf97	80129	broad.mit.edu	37	6	151894465	151894465	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:151894465G>A	uc003qol.2	+	6	1020	c.931G>A	c.(931-933)GCC>ACC	p.A311T		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	311											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		GAGTTTGAAGGCCAGTCAGGA	0.522													10	60					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152576134	152576134	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:152576134G>C	uc010kiw.2	-	104	19953	c.19351C>G	c.(19351-19353)CGA>GGA	p.R6451G	SYNE1_uc010kiv.2_Missense_Mutation_p.R975G|SYNE1_uc003qos.3_Missense_Mutation_p.R975G|SYNE1_uc003qot.3_Missense_Mutation_p.R6380G|SYNE1_uc003qou.3_Missense_Mutation_p.R6451G	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6451	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATAACATCTCGATTATCACCA	0.373										HNSCC(10;0.0054)			12	9					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152631869	152631869	+	Missense_Mutation	SNP	C	T	T	rs141550859	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:152631869C>T	uc010kiw.2	-	88	17452	c.16850G>A	c.(16849-16851)CGA>CAA	p.R5617Q	SYNE1_uc010kiv.2_Missense_Mutation_p.R141Q|SYNE1_uc003qos.3_Missense_Mutation_p.R141Q|SYNE1_uc003qot.3_Missense_Mutation_p.R5546Q|SYNE1_uc003qou.3_Missense_Mutation_p.R5617Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5617	Spectrin 17.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GATCATCTGTCGCAACTCCTC	0.363										HNSCC(10;0.0054)			11	19					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152725425	152725425	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:152725425T>G	uc010kiw.2	-	46	7350	c.6748A>C	c.(6748-6750)AGA>CGA	p.R2250R	SYNE1_uc003qot.3_Silent_p.R2257R|SYNE1_uc003qou.3_Silent_p.R2250R|SYNE1_uc010kjb.1_Silent_p.R2233R	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2250	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCTTCCAATCTCAATGCTTTG	0.323										HNSCC(10;0.0054)			28	37					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152792886	152792886	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:152792886G>A	uc010kiw.2	-	16	2080	c.1478C>T	c.(1477-1479)TCC>TTC	p.S493F	SYNE1_uc003qot.3_Missense_Mutation_p.S500F|SYNE1_uc003qou.3_Missense_Mutation_p.S493F|SYNE1_uc010kjb.1_Missense_Mutation_p.S476F|SYNE1_uc003qpa.1_Missense_Mutation_p.S493F|SYNE1_uc003qox.1_Missense_Mutation_p.S9F|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Missense_Mutation_p.S60F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	493	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGATGTGGAGGAAACAAAATG	0.363										HNSCC(10;0.0054)			22	24					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152826458	152826458	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:152826458G>A	uc010kiw.2	-	9	1258	c.656C>T	c.(655-657)GCC>GTC	p.A219V	SYNE1_uc003qot.3_Missense_Mutation_p.A226V|SYNE1_uc003qou.3_Missense_Mutation_p.A219V|SYNE1_uc010kjb.1_Missense_Mutation_p.A219V|SYNE1_uc003qpa.1_Missense_Mutation_p.A219V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	219	Actin-binding.|CH 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CGGTCGAATGGCATGAATAAC	0.428										HNSCC(10;0.0054)			33	31					0	0	1	0	0	
TFB1M	51106	broad.mit.edu	37	6	155578994	155578994	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:155578994A>C	uc003qqj.3	-	7	1081	c.1017T>G	c.(1015-1017)GAT>GAG	p.D339E	TFB1M_uc003qqk.2_RNA|uc003qqi.1_5'Flank	NM_016020	NP_057104	Q8WVM0	TFB1M_HUMAN	transcription factor B1, mitochondrial	339					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial nucleoid	DNA binding|protein binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity			skin(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;1.48e-12)|BRCA - Breast invasive adenocarcinoma(81;0.0131)		TCTCTGCGTCATCCTCTTCTT	0.413													39	33					0	0	1	0	0	
FNDC1	84624	broad.mit.edu	37	6	159653106	159653106	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:159653106G>A	uc010kjv.2	+	11	1762	c.1562G>A	c.(1561-1563)CGA>CAA	p.R521Q	FNDC1_uc010kjw.1_Missense_Mutation_p.R406Q	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	521						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GGGGCGCCCCGAAAACCCCAG	0.567													16	14					0	0	1	0	0	
FNDC1	84624	broad.mit.edu	37	6	159653414	159653414	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:159653414G>A	uc010kjv.2	+	11	2070	c.1870G>A	c.(1870-1872)GCG>ACG	p.A624T	FNDC1_uc010kjw.1_Missense_Mutation_p.A509T	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	624						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TGCCCACCACGCGTCCACCCA	0.667													25	13					0	0	1	0	0	
TCP1	6950	broad.mit.edu	37	6	160200773	160200773	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:160200773A>G	uc003qsr.2	-	11	1575	c.1340T>C	c.(1339-1341)GTT>GCT	p.V447A	TCP1_uc003qss.2_Missense_Mutation_p.V292A|TCP1_uc010kjz.2_Intron|TCP1_uc003qst.2_Missense_Mutation_p.V223A	NM_030752	NP_110379	P17987	TCPA_HUMAN	T-complex protein 1 isoform a	447					'de novo' posttranslational protein folding|tubulin complex assembly	cell junction|Golgi apparatus	ATP binding|unfolded protein binding			breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(65;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		ATTGGGAATAACAAGAAGTGA	0.418													40	35					0	0	1	0	0	
LPA	4018	broad.mit.edu	37	6	161015117	161015117	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:161015117A>G	uc003qtl.2	-	23	3622	c.3502T>C	c.(3502-3504)TGC>CGC	p.C1168R		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3676	Kringle 33.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	CCATGGTAGCAATCCTGGACC	0.473													52	36					0	0	1	0	0	
PLG	5340	broad.mit.edu	37	6	161160158	161160158	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:161160158G>A	uc003qtm.3	+	16	1999	c.1936G>A	c.(1936-1938)GAA>AAA	p.E646K		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	646	Peptidase S1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AGTGAATCTCGAACCGCATGT	0.488													29	35					0	0	1	0	0	
MAP3K4	4216	broad.mit.edu	37	6	161470677	161470677	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:161470677C>T	uc003qtn.2	+	3	1515	c.1373C>T	c.(1372-1374)ACG>ATG	p.T458M	MAP3K4_uc010kkc.1_Missense_Mutation_p.T458M|MAP3K4_uc003qto.2_Missense_Mutation_p.T458M|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Translation_Start_Site	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	458					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		GAAAGTAGTACGGATGAGAGT	0.478													15	20					0	0	1	0	0	
MAP3K4	4216	broad.mit.edu	37	6	161513055	161513055	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:161513055T>G	uc003qtn.2	+	13	3291	c.3149T>G	c.(3148-3150)GTT>GGT	p.V1050G	MAP3K4_uc010kkc.1_Missense_Mutation_p.V1050G|MAP3K4_uc003qto.2_Missense_Mutation_p.V1050G|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.V503G|MAP3K4_uc003qtp.2_Missense_Mutation_p.V40G	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1050					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		CATAAAGAAGTTGTTCGTTTG	0.328													56	45					0	0	1	0	0	
C6orf118	168090	broad.mit.edu	37	6	165713944	165713944	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:165713944T>G	uc003qum.3	-	3	821	c.785A>C	c.(784-786)CAG>CCG	p.Q262P	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	262											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		GTTGAACTGCTGGGGGCTGCA	0.423													71	66					0	0	1	0	0	
KIF25	3834	broad.mit.edu	37	6	168440763	168440763	+	Silent	SNP	G	A	A	rs146483835		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:168440763G>A	uc003qwk.1	+	6	775	c.513G>A	c.(511-513)TCG>TCA	p.S171S	KIF25_uc003qwl.1_Silent_p.S171S	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	171	Kinesin-motor.				microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		GCAGCGCCTCGAAACTGATGG	0.607													29	35					0	0	1	0	0	
DLL1	28514	broad.mit.edu	37	6	170592125	170592125	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:170592125G>A	uc003qxm.2	-	10	2587	c.2117C>T	c.(2116-2118)TCG>TTG	p.S706L		NM_005618	NP_005609	O00548	DLL1_HUMAN	delta-like 1 precursor	706	Cytoplasmic (Potential).				cell communication|cell fate determination|hemopoiesis|Notch receptor processing|Notch signaling pathway|regulation of cell adhesion	extracellular region|integral to plasma membrane	calcium ion binding|Notch binding			lung(4)|ovary(1)	5		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;6.71e-23)|BRCA - Breast invasive adenocarcinoma(81;4.81e-06)|GBM - Glioblastoma multiforme(31;0.0584)		GACGTACACCGACTGGTACTT	0.502													41	61					0	0	1	0	0	
INTS1	26173	broad.mit.edu	37	7	1511249	1511249	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:1511249G>A	uc003skn.2	-	45	6314	c.6213C>T	c.(6211-6213)GAC>GAT	p.D2071D	INTS1_uc003skm.1_Silent_p.D208D	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	2071					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		GGGACATCTCGTCTATGTCAC	0.632													22	59					0	0	1	0	0	
TFAMP1	260341	broad.mit.edu	37	7	1654478	1654478	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:1654478G>A	uc003slb.2	+	1		c.373G>A				NR_001288				Homo sapiens transcription factor A, mitochondrial pseudogene 1 (TFAMP1), non-coding RNA.												0						TAGAAGAATCGCTGAGCATTG	0.363													14	9					0	0	1	0	0	
EIF3B	8662	broad.mit.edu	37	7	2406181	2406181	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:2406181C>A	uc003slx.2	+	8	1394	c.1311C>A	c.(1309-1311)TTC>TTA	p.F437L	EIF3B_uc003sly.2_Missense_Mutation_p.F437L|EIF3B_uc003sma.2_Missense_Mutation_p.F165L	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	437	WD 3.				regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		ATGGCAAATTCTTTGCCAGAA	0.483													41	75					6.1244e-12	6.75432e-12	1	1	0	
EIF3B	8662	broad.mit.edu	37	7	2414218	2414218	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:2414218C>T	uc003slx.2	+	13	1949	c.1866C>T	c.(1864-1866)TTC>TTT	p.F622F	EIF3B_uc003sly.2_Silent_p.F622F|EIF3B_uc003sma.2_Silent_p.F350F|EIF3B_uc003smb.2_5'Flank	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	622					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		AAGGACAGTTCGTGGTGTTGG	0.627													36	89					0	0	1	0	0	
CARD11	84433	broad.mit.edu	37	7	2946428	2946428	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:2946428G>A	uc003smv.2	-	25	3713	c.3309C>T	c.(3307-3309)TGC>TGT	p.C1103C		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	1103	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CCTTCAGCCGGCACACGCGCA	0.672			Mis		DLBCL								17	31					0	0	1	0	0	
CARD11	84433	broad.mit.edu	37	7	2951926	2951926	+	Silent	SNP	G	A	A	rs148497800	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:2951926G>A	uc003smv.2	-	23	3428	c.3024C>T	c.(3022-3024)ATC>ATT	p.I1008I		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	1008	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CTCTTGTGACGATATCTGCAG	0.582			Mis		DLBCL								21	30					0	0	1	0	0	
CARD11	84433	broad.mit.edu	37	7	2974176	2974176	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:2974176A>C	uc003smv.2	-	10	1833	c.1429T>G	c.(1429-1431)TCT>GCT	p.S477A		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	477					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GAGGTGGAAGAATCGTCAGCT	0.577			Mis		DLBCL								12	27					0	0	1	0	0	
SDK1	221935	broad.mit.edu	37	7	3678674	3678674	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:3678674T>G	uc003smx.2	+	3	636	c.497T>G	c.(496-498)TTT>TGT	p.F166C		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	166	Ig-like C2-type 1.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GATGCTGGGTTTTACCGCTGC	0.408													9	20					0	0	1	0	0	
SDK1	221935	broad.mit.edu	37	7	3681706	3681706	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:3681706G>T	uc003smx.2	+	4	821	c.682G>T	c.(682-684)GAA>TAA	p.E228*		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	228	Ig-like C2-type 2.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TTGGTTTAGAGAAGGGCACAA	0.453													21	53					2.39556e-15	2.72789e-15	1	1	0	
SDK1	221935	broad.mit.edu	37	7	4116768	4116768	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:4116768C>T	uc003smx.2	+	21	3288	c.3149C>T	c.(3148-3150)GCC>GTC	p.A1050V	SDK1_uc010kso.2_Missense_Mutation_p.A326V	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1050	Fibronectin type-III 4.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GCTGTGACTGCCGTGGGCACT	0.577													15	39					0	0	1	0	0	
TNRC18	84629	broad.mit.edu	37	7	5372633	5372633	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:5372633T>C	uc003soi.3	-	19	6116	c.5767A>G	c.(5767-5769)AAG>GAG	p.K1923E		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	1923							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GGCGACCGCTTGCGCACCTTG	0.721													5	7					0	0	1	0	0	
TNRC18	84629	broad.mit.edu	37	7	5410840	5410840	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:5410840C>T	uc003soi.3	-	11	3734	c.3385G>A	c.(3385-3387)GAA>AAA	p.E1129K		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	1129	Pro-rich.						DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GGCTTGTCTTCGGGTGAGAGT	0.701													10	18					0	0	1	0	0	
TNRC18	84629	broad.mit.edu	37	7	5415827	5415827	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:5415827C>T	uc003soi.3	-	9	2986	c.2637G>A	c.(2635-2637)CCG>CCA	p.P879P		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	879							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GCCAGAGGGGCGGTACGGTGG	0.692													5	5					0	0	1	0	0	
RNF216	54476	broad.mit.edu	37	7	5662563	5662563	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:5662563G>A	uc003soy.1	-	17	2719	c.2529C>T	c.(2527-2529)TTC>TTT	p.F843F	RNF216_uc010ksz.1_Silent_p.F465F|RNF216_uc010kta.1_Silent_p.F465F|RNF216_uc011jwj.1_Silent_p.F465F|RNF216_uc003sox.1_Silent_p.F900F	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	843	Pro-rich.				apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		GGATGGGACCGAAGTCATAGT	0.627													75	124					0	0	1	0	0	
RNF216	54476	broad.mit.edu	37	7	5780605	5780605	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:5780605G>A	uc003soy.1	-	4	1062	c.872C>T	c.(871-873)ACG>ATG	p.T291M	RNF216_uc010ksz.1_Translation_Start_Site|RNF216_uc010kta.1_Intron|RNF216_uc011jwj.1_Intron|RNF216_uc003sox.1_Missense_Mutation_p.T348M	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	291					apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		AAAACTTACCGTTTCTTTCAC	0.343													21	48					0	0	1	0	0	
RNF216	54476	broad.mit.edu	37	7	5792512	5792512	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:5792512C>T	uc003soy.1	-	3	356	c.166G>A	c.(166-168)GAA>AAA	p.E56K	RNF216_uc010ksz.1_5'UTR|RNF216_uc010kta.1_5'UTR|RNF216_uc011jwj.1_Intron|RNF216_uc003sox.1_Missense_Mutation_p.E56K	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	56					apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		AGGTCCTCTTCTTCATGCTGC	0.453													13	28					0	0	1	0	0	
ZNF12	7559	broad.mit.edu	37	7	6731035	6731035	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:6731035C>A	uc003sqt.1	-	5	2092	c.1538G>T	c.(1537-1539)AGA>ATA	p.R513I	ZNF12_uc011jxa.1_Missense_Mutation_p.R351I|ZNF12_uc003sqs.1_Missense_Mutation_p.R475I	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	513	C2H2-type 9.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		TGAATGAGTTCTATGATGGAT	0.418													33	79					4.4194e-11	4.82974e-11	1	1	0	
RSPH10B2	728194	broad.mit.edu	37	7	6805365	6805365	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:6805365C>T	uc003sqw.1	+	7	873	c.602C>T	c.(601-603)ACG>ATG	p.T201M	RSPH10B2_uc010ktk.1_Missense_Mutation_p.T201M|RSPH10B2_uc011jxc.1_Intron|RSPH10B2_uc010ktl.1_RNA	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	201	MORN 5.									ovary(1)|pancreas(1)|skin(1)	3						CAAGAGGGTACGTGTTGGTAC	0.423													14	67					0	0	1	0	0	
C1GALT1	56913	broad.mit.edu	37	7	7278086	7278086	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:7278086G>T	uc010ktn.2	+	3	644	c.421G>T	c.(421-423)GAT>TAT	p.D141Y	C1GALT1_uc003sra.2_Missense_Mutation_p.D141Y|C1GALT1_uc010kto.1_Missense_Mutation_p.D141Y	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	141	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		AGAAGGCAGAGATCAACTATA	0.373													30	67					9.39395e-14	1.05303e-13	1	1	0	
C1GALT1	56913	broad.mit.edu	37	7	7278461	7278461	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:7278461T>A	uc010ktn.2	+	3	1019	c.796T>A	c.(796-798)TTT>ATT	p.F266I	C1GALT1_uc003sra.2_Missense_Mutation_p.F266I|C1GALT1_uc010kto.1_Missense_Mutation_p.F266I	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	266	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		AAAAGAAACTTTTCATCCCTT	0.378													22	42					0	0	1	0	0	
COL28A1	340267	broad.mit.edu	37	7	7493131	7493131	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:7493131T>G	uc003src.1	-	17	1497	c.1380A>C	c.(1378-1380)CAA>CAC	p.Q460H	COL28A1_uc011jxe.1_Missense_Mutation_p.Q143H|COL28A1_uc003srd.2_Missense_Mutation_p.Q15H	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	460					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CAATAGGACCTTGGATTCCCt	0.373													27	72					0	0	1	0	0	
PHF14	9678	broad.mit.edu	37	7	11076293	11076293	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:11076293A>C	uc003sry.1	+	9	2286	c.1851A>C	c.(1849-1851)GCA>GCC	p.A617A	PHF14_uc011jxi.1_Silent_p.A332A|PHF14_uc003srz.2_Silent_p.A617A|PHF14_uc011jxj.1_Silent_p.A332A	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	617							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		CTCTCACTGCAGATTTTGTGA	0.348													12	29					0	0	1	0	0	
PHF14	9678	broad.mit.edu	37	7	11091326	11091326	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:11091326A>G	uc003sry.1	+	14	2835	c.2400A>G	c.(2398-2400)TCA>TCG	p.S800S	PHF14_uc011jxi.1_Silent_p.S515S|PHF14_uc003srz.2_Silent_p.S800S|PHF14_uc011jxj.1_Silent_p.S515S	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	800							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		CCAAACGATCAAGGAGGCAGA	0.458													13	34					0	0	1	0	0	
THSD7A	221981	broad.mit.edu	37	7	11446969	11446969	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:11446969G>A	uc003ssf.3	-	19	4132	c.3880C>T	c.(3880-3882)CCT>TCT	p.P1294S		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1294	Extracellular (Potential).|TSP type-1 13.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TCTGACCAAGGAGACCAATCA	0.438										HNSCC(18;0.044)			12	14					0	0	1	0	0	
THSD7A	221981	broad.mit.edu	37	7	11450874	11450874	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:11450874C>T	uc003ssf.3	-	18	4010	c.3758G>A	c.(3757-3759)CGA>CAA	p.R1253Q		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1253	TSP type-1 12.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GCCATCACTTCGAACACAATC	0.403										HNSCC(18;0.044)			19	41					0	0	1	0	0	
THSD7A	221981	broad.mit.edu	37	7	11514155	11514155	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:11514155T>C	uc003ssf.3	-	8	2310	c.2058A>G	c.(2056-2058)GTA>GTG	p.V686V		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	686	TSP type-1 6.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TACAGCTTCGTACTTCTTGCA	0.463										HNSCC(18;0.044)			14	31					0	0	1	0	0	
SCIN	85477	broad.mit.edu	37	7	12680065	12680065	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:12680065G>A	uc003ssn.3	+	11	1714	c.1504G>A	c.(1504-1506)GGA>AGA	p.G502R	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Missense_Mutation_p.G255R	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	502	Ca(2+)-dependent actin binding.				actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		ATCAAAGAAAGGAGGTCAGGC	0.463													10	26					0	0	1	0	0	
ETV1	2115	broad.mit.edu	37	7	13946202	13946202	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:13946202T>G	uc011jxq.1	-	12	1702	c.963A>C	c.(961-963)GGA>GGC	p.G321G	ETV1_uc011jxn.1_Silent_p.G281G|ETV1_uc011jxo.1_Silent_p.G218G|ETV1_uc011jxp.1_Silent_p.G263G|ETV1_uc003ssw.3_Silent_p.G298G|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Silent_p.G303G|ETV1_uc011jxs.1_Silent_p.G303G|ETV1_uc010ktv.2_Missense_Mutation_p.E190A	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	321					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						CCCGATACATTCCTGGCTCTT	0.363			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								7	19					0	0	1	0	0	
ETV1	2115	broad.mit.edu	37	7	13971292	13971292	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:13971292G>A	uc011jxq.1	-	9	1376	c.637C>T	c.(637-639)CGC>TGC	p.R213C	ETV1_uc011jxn.1_Missense_Mutation_p.R173C|ETV1_uc011jxo.1_Missense_Mutation_p.R110C|ETV1_uc011jxp.1_Missense_Mutation_p.R155C|ETV1_uc003ssw.3_Missense_Mutation_p.R213C|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.R195C|ETV1_uc011jxs.1_Missense_Mutation_p.R195C|ETV1_uc010ktv.2_Missense_Mutation_p.R82C	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	213					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						GACATCTGGCGTTGGTACATA	0.532			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								21	30					0	0	1	0	0	
ETV1	2115	broad.mit.edu	37	7	13971370	13971370	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:13971370G>A	uc011jxq.1	-	9	1298	c.559C>T	c.(559-561)CGC>TGC	p.R187C	ETV1_uc011jxn.1_Missense_Mutation_p.R147C|ETV1_uc011jxo.1_Missense_Mutation_p.R84C|ETV1_uc011jxp.1_Missense_Mutation_p.R129C|ETV1_uc003ssw.3_Missense_Mutation_p.R187C|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.R169C|ETV1_uc011jxs.1_Missense_Mutation_p.R169C|ETV1_uc010ktv.2_Missense_Mutation_p.R56C	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	187					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						AGCTGGCGGCGAAATCTAGGG	0.448			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								15	33					0	0	1	0	0	
ETV1	2115	broad.mit.edu	37	7	14027729	14027729	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:14027729G>T	uc011jxq.1	-	4	854	c.115C>A	c.(115-117)CTG>ATG	p.L39M	ETV1_uc011jxn.1_5'Flank|ETV1_uc011jxo.1_5'Flank|ETV1_uc011jxp.1_5'Flank|ETV1_uc003ssw.3_Missense_Mutation_p.L39M|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.L39M|ETV1_uc011jxs.1_Missense_Mutation_p.L39M|ETV1_uc010ktv.2_5'Flank	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	39				L -> V (in Ref. 2; CAA60642).	transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						TCATGAGCCAGATCTCTGTTA	0.388			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								8	35					1.58986e-06	1.65575e-06	1	1	0	
DGKB	1607	broad.mit.edu	37	7	14613896	14613896	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:14613896C>A	uc003ssz.2	-	19	1901	c.1714G>T	c.(1714-1716)GAT>TAT	p.D572Y	DGKB_uc011jxt.1_Missense_Mutation_p.D553Y|DGKB_uc003sta.2_Missense_Mutation_p.D572Y|DGKB_uc011jxu.1_Missense_Mutation_p.D571Y	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	572					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	CCTTTCTCATCTTTGTCATTA	0.368													80	138					7.68447e-34	9.45924e-34	1	1	0	
DGKB	1607	broad.mit.edu	37	7	14741347	14741347	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:14741347G>A	uc003ssz.2	-	6	662	c.475C>T	c.(475-477)CGC>TGC	p.R159C	DGKB_uc011jxt.1_Missense_Mutation_p.R152C|DGKB_uc003sta.2_Missense_Mutation_p.R159C|DGKB_uc011jxu.1_Missense_Mutation_p.R159C|DGKB_uc011jxv.1_Missense_Mutation_p.R159C	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	159	EF-hand 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TCATAAAGGCGAAACATAACT	0.318													11	48					0	0	1	0	0	
ISPD	729920	broad.mit.edu	37	7	16255710	16255710	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:16255710A>C	uc010ktx.2	-	9	1232	c.1232T>G	c.(1231-1233)CTT>CGT	p.L411R	ISPD_uc010kty.2_Missense_Mutation_p.L361R|uc003stf.2_Intron	NM_001101426	NP_001094896	A4D126	ISPD_HUMAN	notch1-induced protein isoform a	411					isoprenoid biosynthetic process		nucleotidyltransferase activity			ovary(1)	1						AGATATGAGAAGCCCATATAA	0.328										Multiple Myeloma(15;0.18)			13	34					0	0	1	0	0	
ISPD	729920	broad.mit.edu	37	7	16255773	16255773	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:16255773T>C	uc010ktx.2	-	9	1169	c.1169A>G	c.(1168-1170)AAC>AGC	p.N390S	ISPD_uc010kty.2_Missense_Mutation_p.N340S|uc003stf.2_Intron	NM_001101426	NP_001094896	A4D126	ISPD_HUMAN	notch1-induced protein isoform a	390					isoprenoid biosynthetic process		nucleotidyltransferase activity			ovary(1)	1						CTGCATTAGGTTTTCCATTTT	0.308										Multiple Myeloma(15;0.18)			12	17					0	0	1	0	0	
SOSTDC1	25928	broad.mit.edu	37	7	16505131	16505131	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:16505131T>G	uc003stg.2	-	1	344	c.163A>C	c.(163-165)AAT>CAT	p.N55H	SOSTDC1_uc003sth.2_Missense_Mutation_p.N55H	NM_015464	NP_056279	Q6X4U4	SOSD1_HUMAN	sclerostin domain containing 1 precursor	55					Wnt receptor signaling pathway					ovary(2)|central_nervous_system(1)	3	Lung NSC(10;0.185)			UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		CTGCCTCCATTTCTGGCTTGA	0.408													13	126					0	0	1	0	0	
ANKMY2	57037	broad.mit.edu	37	7	16650274	16650274	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:16650274C>A	uc003sti.2	-	6	846	c.646G>T	c.(646-648)GAA>TAA	p.E216*	ANKMY2_uc010ktz.2_RNA	NM_020319	NP_064715	Q8IV38	ANKY2_HUMAN	ankyrin repeat and MYND domain containing 2	216						cilium	zinc ion binding			central_nervous_system(1)	1	Lung NSC(10;0.103)|all_lung(11;0.204)			UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		GCCAATACTTCATTCATGTCT	0.358													23	70					1.55469e-16	1.78953e-16	1	1	0	
AHR	196	broad.mit.edu	37	7	17378642	17378642	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:17378642G>A	uc011jxz.1	+	10	1806	c.1193G>A	c.(1192-1194)CGA>CAA	p.R398Q	AHR_uc003stt.3_RNA	NM_001621	NP_001612	P35869	AHR_HUMAN	aryl hydrocarbon receptor precursor	398					apoptosis|blood vessel development|cell cycle|regulation of B cell proliferation|response to stress|transcription from RNA polymerase II promoter|xenobiotic metabolic process	cytosolic aryl hydrocarbon receptor complex|transcription factor complex	Hsp90 protein binding|ligand-dependent nuclear receptor activity|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			urinary_tract(1)|kidney(1)|pancreas(1)	3	Lung NSC(10;0.0392)|all_lung(11;0.0754)					TTACGAAAACGAAATACGAAG	0.333													41	88					0	0	1	0	0	
AHR	196	broad.mit.edu	37	7	17379187	17379187	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:17379187G>T	uc011jxz.1	+	10	2351	c.1738G>T	c.(1738-1740)GAA>TAA	p.E580*	AHR_uc003stt.3_RNA	NM_001621	NP_001612	P35869	AHR_HUMAN	aryl hydrocarbon receptor precursor	580					apoptosis|blood vessel development|cell cycle|regulation of B cell proliferation|response to stress|transcription from RNA polymerase II promoter|xenobiotic metabolic process	cytosolic aryl hydrocarbon receptor complex|transcription factor complex	Hsp90 protein binding|ligand-dependent nuclear receptor activity|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			urinary_tract(1)|kidney(1)|pancreas(1)	3	Lung NSC(10;0.0392)|all_lung(11;0.0754)					CTTAACGGATGAAATCCTGAC	0.383													59	101					1.00798e-23	1.20828e-23	1	1	0	
SNX13	23161	broad.mit.edu	37	7	17836501	17836501	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:17836501G>A	uc003stw.1	-	25	2821	c.2608C>T	c.(2608-2610)CGA>TGA	p.R870*	SNX13_uc003stv.2_Nonsense_Mutation_p.R859*|SNX13_uc010kuc.2_Nonsense_Mutation_p.R656*|SNX13_uc010kub.2_Nonsense_Mutation_p.R265*			Q9Y5W8	SNX13_HUMAN	SubName: Full=Putative uncharacterized protein SNX13; SubName: Full=Sorting nexin 13, isoform CRA_g;	870					cell communication|intracellular protein transport|negative regulation of signal transduction|positive regulation of GTPase activity	early endosome membrane	phosphatidylinositol binding|signal transducer activity			central_nervous_system(2)|kidney(1)	3	Lung NSC(10;0.0261)|all_lung(11;0.0521)					GTTCTCATTCGAATACTTTTA	0.328													39	92					0	0	1	0	0	
SNX13	23161	broad.mit.edu	37	7	17854462	17854462	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:17854462G>A	uc003stw.1	-	20	2305	c.2092C>T	c.(2092-2094)CGC>TGC	p.R698C	SNX13_uc003stv.2_Missense_Mutation_p.R687C|SNX13_uc010kuc.2_Missense_Mutation_p.R484C|SNX13_uc010kub.2_Missense_Mutation_p.R93C			Q9Y5W8	SNX13_HUMAN	SubName: Full=Putative uncharacterized protein SNX13; SubName: Full=Sorting nexin 13, isoform CRA_g;	698					cell communication|intracellular protein transport|negative regulation of signal transduction|positive regulation of GTPase activity	early endosome membrane	phosphatidylinositol binding|signal transducer activity			central_nervous_system(2)|kidney(1)	3	Lung NSC(10;0.0261)|all_lung(11;0.0521)					CTTACCTTGCGAGCAAAATCC	0.388													5	7					0	0	1	0	0	
SNX13	23161	broad.mit.edu	37	7	17890483	17890483	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:17890483T>C	uc003stw.1	-	10	1155	c.942A>G	c.(940-942)TTA>TTG	p.L314L	SNX13_uc003stv.2_Silent_p.L314L|SNX13_uc010kuc.2_Silent_p.L111L			Q9Y5W8	SNX13_HUMAN	SubName: Full=Putative uncharacterized protein SNX13; SubName: Full=Sorting nexin 13, isoform CRA_g;	314					cell communication|intracellular protein transport|negative regulation of signal transduction|positive regulation of GTPase activity	early endosome membrane	phosphatidylinositol binding|signal transducer activity			central_nervous_system(2)|kidney(1)	3	Lung NSC(10;0.0261)|all_lung(11;0.0521)					TAAGATACTGTAATTCTTCTG	0.303													19	44					0	0	1	0	0	
PRPS1L1	221823	broad.mit.edu	37	7	18066628	18066628	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:18066628G>A	uc003stz.2	-	1	859	c.778C>T	c.(778-780)CGC>TGC	p.R260C		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	260					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					GTGTTGATGCGAGAAATGGCT	0.443													48	110					0	0	1	0	0	
HDAC9	9734	broad.mit.edu	37	7	18687588	18687588	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:18687588G>T	uc003suh.2	+	9	1248	c.1207G>T	c.(1207-1209)GAA>TAA	p.E403*	HDAC9_uc003sue.2_Nonsense_Mutation_p.E403*|HDAC9_uc011jyd.1_Nonsense_Mutation_p.E403*|HDAC9_uc003sui.2_Nonsense_Mutation_p.E406*|HDAC9_uc003suj.2_Nonsense_Mutation_p.E362*|HDAC9_uc011jya.1_Nonsense_Mutation_p.E400*|HDAC9_uc003sua.1_Nonsense_Mutation_p.E381*|HDAC9_uc011jyb.1_Nonsense_Mutation_p.E359*|HDAC9_uc003sud.1_Nonsense_Mutation_p.E403*|HDAC9_uc011jyc.1_Nonsense_Mutation_p.E362*|HDAC9_uc003suf.1_Nonsense_Mutation_p.E434*|HDAC9_uc010kud.1_Nonsense_Mutation_p.E406*|HDAC9_uc011jye.1_Nonsense_Mutation_p.E375*|HDAC9_uc011jyf.1_Nonsense_Mutation_p.E326*|HDAC9_uc010kue.1_Nonsense_Mutation_p.E146*	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	403					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	ATTATTGAAAGAACAAATGCG	0.443													3	19					0.004672	0.00471866	1	1	0	
HDAC9	9734	broad.mit.edu	37	7	18688191	18688191	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:18688191G>A	uc003suh.2	+	10	1384	c.1343G>A	c.(1342-1344)CGA>CAA	p.R448Q	HDAC9_uc003sue.2_Missense_Mutation_p.R448Q|HDAC9_uc011jyd.1_Missense_Mutation_p.R448Q|HDAC9_uc003sui.2_Missense_Mutation_p.R451Q|HDAC9_uc003suj.2_Missense_Mutation_p.R407Q|HDAC9_uc011jya.1_Missense_Mutation_p.R445Q|HDAC9_uc003sua.1_Missense_Mutation_p.R426Q|HDAC9_uc011jyb.1_Missense_Mutation_p.R404Q|HDAC9_uc003sud.1_Missense_Mutation_p.R448Q|HDAC9_uc011jyc.1_Missense_Mutation_p.R407Q|HDAC9_uc003suf.1_Missense_Mutation_p.R479Q|HDAC9_uc010kud.1_Missense_Mutation_p.R451Q|HDAC9_uc011jye.1_Missense_Mutation_p.R420Q|HDAC9_uc011jyf.1_Missense_Mutation_p.R371Q|HDAC9_uc010kue.1_Missense_Mutation_p.R191Q	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	448					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity	p.P448P(1)		lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CCCCTGAACCGAACCCAGTCT	0.517													36	78					0	0	1	0	0	
HDAC9	9734	broad.mit.edu	37	7	18975448	18975448	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:18975448G>A	uc003suh.2	+	22	2852	c.2811G>A	c.(2809-2811)ACG>ACA	p.T937T	HDAC9_uc003sue.2_Silent_p.T937T|HDAC9_uc003sui.2_Silent_p.T940T|HDAC9_uc003suj.2_Silent_p.T896T|HDAC9_uc003suk.2_Silent_p.T185T	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	937	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GTCATTTGACGAAGCAATTGA	0.363													66	116					0	0	1	0	0	
FERD3L	222894	broad.mit.edu	37	7	19184613	19184613	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:19184613G>A	uc003suo.1	-	1	432	c.373C>T	c.(373-375)CGG>TGG	p.R125W	uc003sun.1_RNA	NM_152898	NP_690862	Q96RJ6	FER3L_HUMAN	nephew of atonal 3	125	Helix-loop-helix motif.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			large_intestine(1)	1						ACCTTCCTCCGCAGCTGGTCA	0.587													24	49					0	0	1	0	0	
MACC1	346389	broad.mit.edu	37	7	20180649	20180649	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:20180649C>A	uc003sus.3	-	7	2788	c.2479G>T	c.(2479-2481)GAA>TAA	p.E827*	MACC1_uc010kug.2_Nonsense_Mutation_p.E827*	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	827					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						CCAGTTAATTCTCTCCAGTGT	0.383													32	87					5.90632e-09	6.31323e-09	1	1	0	
ITGB8	3696	broad.mit.edu	37	7	20420296	20420296	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:20420296A>C	uc003suu.2	+	5	1348	c.643A>C	c.(643-645)AAT>CAT	p.N215H	ITGB8_uc011jyh.1_Missense_Mutation_p.N80H|ITGB8_uc003sut.2_Missense_Mutation_p.N215H	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	215	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						CAGTGACTACAATTTAGACTG	0.388													37	75					0	0	1	0	0	
ABCB5	340273	broad.mit.edu	37	7	20682911	20682911	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:20682911G>A	uc010kuh.2	+	6	656	c.419G>A	c.(418-420)CGA>CAA	p.R140Q		NM_001163941	NP_001157413	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	324	Extracellular (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						AAGAGGATTCGAAAACAGTTT	0.418													15	31					0	0	1	0	0	
SP8	221833	broad.mit.edu	37	7	20824181	20824181	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:20824181C>T	uc003suy.2	-	3	1442	c.1201G>A	c.(1201-1203)GAC>AAC	p.D401N	SP8_uc003suz.2_Missense_Mutation_p.D419N	NM_198956	NP_945194	Q8IXZ3	SP8_HUMAN	Sp8 transcription factor isoform 2	401					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TGCAGCTCGTCGGAGCGCGTG	0.657													8	12					0	0	1	0	0	
DNAH11	8701	broad.mit.edu	37	7	21641066	21641066	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:21641066G>T	uc003svc.2	+	18	3509	c.3478G>T	c.(3478-3480)GAA>TAA	p.E1160*		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1160	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ACTTCAGAGAGAATTAAATGA	0.348									Kartagener_syndrome				23	49					1.96895e-08	2.09068e-08	1	1	0	
DNAH11	8701	broad.mit.edu	37	7	21721288	21721288	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:21721288C>A	uc003svc.2	+	31	5499	c.5468C>A	c.(5467-5469)TCT>TAT	p.S1823Y		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1823	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AAACTTATTTCTCAGAAGGCA	0.383									Kartagener_syndrome				30	66					4.31634e-10	4.67161e-10	1	1	0	
DNAH11	8701	broad.mit.edu	37	7	21857846	21857846	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:21857846C>T	uc003svc.2	+	66	10632	c.10601C>T	c.(10600-10602)GCC>GTC	p.A3534V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3534	AAA 5 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTTTTGAATGCCATTGAAACT	0.318									Kartagener_syndrome				17	33					0	0	1	0	0	
RAPGEF5	9771	broad.mit.edu	37	7	22175722	22175722	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:22175722C>T	uc003svg.2	-	23	2204	c.1891G>A	c.(1891-1893)GCC>ACC	p.A631T	RAPGEF5_uc011jyl.1_Missense_Mutation_p.A312T	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	481	Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TCTCTGTAGGCTTTGTGATTT	0.358													8	35					0	0	1	0	0	
FAM126A	84668	broad.mit.edu	37	7	22985298	22985298	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:22985298A>C	uc003svm.3	-	11	1731	c.1476T>G	c.(1474-1476)ATT>ATG	p.I492M	FAM126A_uc003svn.3_3'UTR	NM_032581	NP_115970	Q9BYI3	HYCCI_HUMAN	family with sequence similarity 126, member A	492						cytoplasm|membrane	signal transducer activity			central_nervous_system(1)	1						CTGAAACGTAAATAAGCTTTT	0.433													43	89					0	0	1	0	0	
NUPL2	11097	broad.mit.edu	37	7	23239806	23239806	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:23239806C>T	uc003svu.2	+	7	973	c.714C>T	c.(712-714)AGC>AGT	p.S238S	NUPL2_uc003svv.2_RNA|NUPL2_uc003svw.2_Silent_p.S115S|NUPL2_uc011jyw.1_RNA|NUPL2_uc003svx.2_Silent_p.S115S|NUPL2_uc011jyx.1_Silent_p.S10S	NM_007342	NP_031368	O15504	NUPL2_HUMAN	nucleoporin like 2	238	Ser-rich.				carbohydrate metabolic process|glucose transport|mRNA transport|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nuclear pore	nuclear export signal receptor activity|nucleic acid binding|zinc ion binding			skin(2)|ovary(1)	3						TCAATAACAGCAGCAGTGATA	0.358													8	11					0	0	1	0	0	
GPNMB	10457	broad.mit.edu	37	7	23286505	23286505	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:23286505T>G	uc003swc.2	+	1	190	c.29T>G	c.(28-30)TTT>TGT	p.F10C	GPNMB_uc003swa.2_Missense_Mutation_p.F10C|GPNMB_uc003swb.2_Missense_Mutation_p.F10C|GPNMB_uc011jyy.1_Missense_Mutation_p.F10C|GPNMB_uc011jyz.1_Missense_Mutation_p.F10C	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	10					negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			TTCCTGGGATTTCTGCTCCTG	0.483													46	89					0	0	1	0	0	
GPNMB	10457	broad.mit.edu	37	7	23306137	23306137	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:23306137A>G	uc003swc.2	+	7	1217	c.1056A>G	c.(1054-1056)GGA>GGG	p.G352G	GPNMB_uc003swb.2_Silent_p.G340G|GPNMB_uc011jyy.1_Silent_p.G294G|GPNMB_uc011jyz.1_Silent_p.G241G	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	352	Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			ACACCCCAGGACCTGCTGGTG	0.383													24	61					0	0	1	0	0	
IGF2BP3	10643	broad.mit.edu	37	7	23352069	23352069	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:23352069C>A	uc003swg.2	-	15	1918	c.1652G>T	c.(1651-1653)AGA>ATA	p.R551I	IGF2BP3_uc003swf.2_Missense_Mutation_p.R170I	NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	551	KH 4.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						CTGAATTTTTCTCTGGGCAAC	0.393													34	63					9.17885e-22	1.0907e-21	1	1	0	
TRA2A	29896	broad.mit.edu	37	7	23552632	23552632	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:23552632G>A	uc003swi.2	-	4	620	c.406C>T	c.(406-408)CGT>TGT	p.R136C	TRA2A_uc011jzb.1_RNA|TRA2A_uc011jzc.1_Missense_Mutation_p.R35C|TRA2A_uc011jzd.1_Missense_Mutation_p.R35C|TRA2A_uc010kuo.1_RNA	NM_013293	NP_037425	Q13595	TRA2A_HUMAN	transformer-2 alpha	136	RRM.				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|RNA binding			ovary(1)	1						AATACTTCACGAAGATCCCTC	0.413													25	48					0	0	1	0	0	
CLK2P	1197	broad.mit.edu	37	7	23625335	23625335	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:23625335A>G	uc003swk.2	-	1	812	c.162T>C	c.(160-162)CAT>CAC	p.H54H		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						GCTTGTTATCATGGAGGAACT	0.493													32	87					0	0	1	0	0	
C7orf46	340277	broad.mit.edu	37	7	23724207	23724207	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:23724207A>C	uc003swo.3	+	2	244	c.155A>C	c.(154-156)AAC>ACC	p.N52T	C7orf46_uc003swq.3_Missense_Mutation_p.N52T|C7orf46_uc003swr.3_Intron|C7orf46_uc003swp.3_RNA|C7orf46_uc010kup.2_RNA	NM_199136	NP_954587	A4D161	CG046_HUMAN	hypothetical protein LOC340277 isoform 1	52											0						CGCTTACAAAACAGATTATTT	0.378													22	44					0	0	1	0	0	
STK31	56164	broad.mit.edu	37	7	23811802	23811802	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:23811802C>T	uc003sws.3	+	15	1937	c.1870C>T	c.(1870-1872)CCC>TCC	p.P624S	STK31_uc003swt.3_Missense_Mutation_p.P601S|STK31_uc011jze.1_Missense_Mutation_p.P624S|STK31_uc010kuq.2_Missense_Mutation_p.P601S	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	624							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AAATAAGAGTCCCAGTGTGGA	0.303													28	60					0	0	1	0	0	
NFE2L3	9603	broad.mit.edu	37	7	26225069	26225069	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:26225069G>A	uc003sxq.2	+	4	2023	c.1751G>A	c.(1750-1752)CGA>CAA	p.R584Q		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	584	Basic motif.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						GACATCAGACGAAGAGGGAAA	0.373													16	47					0	0	1	0	0	
HIBADH	11112	broad.mit.edu	37	7	27669050	27669050	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:27669050C>A	uc003szf.2	-	4	619	c.424G>T	c.(424-426)GAA>TAA	p.E142*	HIBADH_uc003szg.2_Nonsense_Mutation_p.E93*|HIBADH_uc003szh.2_Nonsense_Mutation_p.E41*|HIBADH_uc003szi.2_Nonsense_Mutation_p.E93*	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	142					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	TTGGCCAATTCTTTTGAAACT	0.333													49	71					1.21353e-23	1.45383e-23	1	1	0	
TAX1BP1	8887	broad.mit.edu	37	7	27831686	27831686	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:27831686G>A	uc003szl.2	+	9	1258	c.1100G>A	c.(1099-1101)CGG>CAG	p.R367Q	TAX1BP1_uc011jzo.1_Missense_Mutation_p.R367Q|TAX1BP1_uc003szk.2_Missense_Mutation_p.R367Q|TAX1BP1_uc011jzp.1_Missense_Mutation_p.R210Q	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	367	Oligomerization.|Potential.				anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			CAGGCAACTCGGCAAGAAGTT	0.418													28	53					0	0	1	0	0	
LOC402644	402644	broad.mit.edu	37	7	28319061	28319061	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:28319061C>A	uc010kuz.1	-	1	258	c.258G>T	c.(256-258)GAG>GAT	p.E86D		NM_001126493	NP_001119965			hypothetical protein LOC402644												0						GGATAAATTTCTCATCTTCAA	0.463													25	50					6.12954e-19	7.17843e-19	1	1	0	
CPVL	54504	broad.mit.edu	37	7	29132288	29132288	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:29132288T>C	uc003szv.2	-	6	612	c.493A>G	c.(493-495)ACC>GCC	p.T165A	CPVL_uc003szw.2_Missense_Mutation_p.T165A|CPVL_uc003szx.2_Missense_Mutation_p.T165A	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	165					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						TATCCGTGGGTATCATCAGTA	0.453													13	31					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	7	29781835	29781835	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:29781835C>A	uc003tai.2	+	5	399	c.279C>A	c.(277-279)AGC>AGA	p.S93R						Homo sapiens DPY-19-like 2 pseudogene 3 (DPY19L2P3) pseudogene mRNA, complete sequence.																		CCTTACGTAGCATCCTGCTCG	0.428													10	17					1.58986e-06	1.65575e-06	1	1	0	
C7orf41	222166	broad.mit.edu	37	7	30185810	30185810	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:30185810C>T	uc011kab.1	+	2	381	c.180C>T	c.(178-180)AGC>AGT	p.S60S	C7orf41_uc010kvr.1_RNA|C7orf41_uc003tar.1_Silent_p.S60S	NM_152793	NP_690006	Q8N3F0	CG041_HUMAN	hypothetical protein LOC222166	60											0						GGAGTGAGAGCGAGGACTGCC	0.522													31	57					0	0	1	0	0	
DKFZP586I1420	222161	broad.mit.edu	37	7	30412183	30412183	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:30412183G>T	uc003tau.2	+	1		c.2518G>T				NR_002186				Homo sapiens cDNA FLJ31332 fis, clone MAMGL1000096.												0						GAGAAAAATTGCTGAGCTTAT	0.483													12	26					3.07112e-06	3.18826e-06	1	1	0	
INMT	11185	broad.mit.edu	37	7	30795377	30795377	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:30795377G>A	uc003tbs.1	+	3	718	c.702G>A	c.(700-702)CAG>CAA	p.Q234Q	FAM188B_uc010kwe.2_Intron|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Silent_p.Q233Q	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	234						cytoplasm	amine N-methyltransferase activity				0						ACATTGAACAGCTCCTACACA	0.577													42	94					0	0	1	0	0	
CCDC129	223075	broad.mit.edu	37	7	31611727	31611727	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:31611727A>C	uc003tcj.1	+	6	1313	c.320A>C	c.(319-321)CAG>CCG	p.Q107P	CCDC129_uc011kad.1_Missense_Mutation_p.Q117P|CCDC129_uc003tci.1_Missense_Mutation_p.Q106P|CCDC129_uc011kae.1_Missense_Mutation_p.Q133P|CCDC129_uc003tck.1_Missense_Mutation_p.Q15P	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	107											0						TCTTTGCATCAGTTTTCAGAA	0.403													10	18					0	0	1	0	0	
CCDC129	223075	broad.mit.edu	37	7	31682346	31682346	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:31682346G>A	uc003tcj.1	+	11	2355	c.1362G>A	c.(1360-1362)AAG>AAA	p.K454K	CCDC129_uc011kad.1_Silent_p.K464K|CCDC129_uc003tci.1_Silent_p.K305K|CCDC129_uc011kae.1_Silent_p.K480K|CCDC129_uc003tck.1_Silent_p.K362K	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	454											0						GAGGTAGAAAGCCAAGAGATC	0.522													14	36					0	0	1	0	0	
CCDC129	223075	broad.mit.edu	37	7	31691657	31691657	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:31691657T>C	uc003tcj.1	+	13	3809	c.2816T>C	c.(2815-2817)ATT>ACT	p.I939T	CCDC129_uc011kad.1_Missense_Mutation_p.I949T|CCDC129_uc003tci.1_Missense_Mutation_p.I790T|CCDC129_uc011kae.1_Missense_Mutation_p.I965T|CCDC129_uc003tck.1_Missense_Mutation_p.I847T	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	939											0						AGAGAAGGGATTTTACTGGTA	0.488													5	12					0	0	1	0	0	
C7orf16	10842	broad.mit.edu	37	7	31735144	31735144	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:31735144A>C	uc003tcl.2	+	3	302	c.144A>C	c.(142-144)AAA>AAC	p.K48N	C7orf16_uc011kaf.1_Intron	NM_006658	NP_006649	O96001	GSUB_HUMAN	G-substrate isoform 1	48					behavior|central nervous system development|intracellular protein kinase cascade|protein phosphorylation	soluble fraction				ovary(2)|central_nervous_system(1)	3			GBM - Glioblastoma multiforme(11;0.216)			GAAAGGGAAAAAATGTACAGG	0.398													45	95					0	0	1	0	0	
C7orf16	10842	broad.mit.edu	37	7	31746890	31746890	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:31746890C>T	uc003tcl.2	+	5	619	c.461C>T	c.(460-462)GCT>GTT	p.A154V	C7orf16_uc011kaf.1_Missense_Mutation_p.A103V	NM_006658	NP_006649	O96001	GSUB_HUMAN	G-substrate isoform 1	154					behavior|central nervous system development|intracellular protein kinase cascade|protein phosphorylation	soluble fraction				ovary(2)|central_nervous_system(1)	3			GBM - Glioblastoma multiforme(11;0.216)			GACAAGATAGCTATTTAAAGA	0.423													15	36					0	0	1	0	0	
PDE1C	5137	broad.mit.edu	37	7	31855674	31855674	+	Silent	SNP	G	A	A	rs144853377	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:31855674G>A	uc003tcm.1	-	15	2146	c.1677C>T	c.(1675-1677)GGC>GGT	p.G559G	PDE1C_uc003tcn.1_Silent_p.G559G|PDE1C_uc003tco.1_Silent_p.G619G|PDE1C_uc003tcr.2_Silent_p.G559G|PDE1C_uc003tcs.2_Silent_p.G559G	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	559					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TGCCAGATGCGCCTTCTTCAG	0.502													77	119					0	0	1	0	0	
PDE1C	5137	broad.mit.edu	37	7	31862790	31862790	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:31862790C>T	uc003tcm.1	-	14	1948	c.1479G>A	c.(1477-1479)CCG>CCA	p.P493P	PDE1C_uc003tcn.1_Silent_p.P493P|PDE1C_uc003tco.1_Silent_p.P553P|PDE1C_uc003tcr.2_Silent_p.P493P|PDE1C_uc003tcs.2_Silent_p.P493P	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	493	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			AATTGTTGATCGGGGCACTTC	0.468													49	69					0	0	1	0	0	
KBTBD2	25948	broad.mit.edu	37	7	32909220	32909220	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:32909220A>G	uc003tdb.2	-	4	2268	c.1609T>C	c.(1609-1611)TTT>CTT	p.F537L	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	537	Kelch 5.										0			GBM - Glioblastoma multiforme(11;0.0499)			TCTCGCATAAACACACATAGA	0.448													66	115					0	0	1	0	0	
KBTBD2	25948	broad.mit.edu	37	7	32910050	32910050	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:32910050C>A	uc003tdb.2	-	4	1438	c.779G>T	c.(778-780)AGA>ATA	p.R260I	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	260											0			GBM - Glioblastoma multiforme(11;0.0499)			CATCCCAAGTCTTGGTTTGAA	0.418													27	58					2.41591e-17	2.79654e-17	1	1	0	
NT5C3	51251	broad.mit.edu	37	7	33066500	33066500	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:33066500G>A	uc003tdk.2	-	2	258	c.181C>T	c.(181-183)CGA>TGA	p.R61*	AVL9_uc011kai.1_Intron|NT5C3_uc003tdi.2_Nonsense_Mutation_p.R22*|NT5C3_uc003tdj.2_Nonsense_Mutation_p.R22*	NM_001002010	NP_001002010	Q9H0P0	5NT3_HUMAN	5'-nucleotidase, cytosolic III isoform 1	61					nucleotide metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol|endoplasmic reticulum	2'-phosphotransferase activity|5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1			GBM - Glioblastoma multiforme(11;0.0894)			TTCTTGATTCGAACTGAACTT	0.338													22	38					0	0	1	0	0	
BBS9	27241	broad.mit.edu	37	7	33312691	33312691	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:33312691C>T	uc003tdn.1	+	8	1283	c.770C>T	c.(769-771)GCA>GTA	p.A257V	BBS9_uc003tdo.1_Missense_Mutation_p.A257V|BBS9_uc003tdp.1_Missense_Mutation_p.A257V|BBS9_uc003tdq.1_Missense_Mutation_p.A257V|BBS9_uc010kwn.1_RNA|BBS9_uc011kan.1_Missense_Mutation_p.A257V|BBS9_uc011kao.1_Missense_Mutation_p.A135V	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	257					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			AATCAGTCGGCATCCTCTGTT	0.373									Bardet-Biedl_syndrome				62	128					0	0	1	0	0	
DPY19L2P1	554236	broad.mit.edu	37	7	35129972	35129972	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:35129972A>C	uc003teq.1	-	21	2320	c.1213T>G	c.(1213-1215)TAT>GAT	p.Y405D	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						AAAACATAATAATTCACATGT	0.328													71	122					0	0	1	0	0	
KIAA0895	23366	broad.mit.edu	37	7	36366482	36366482	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:36366482C>T	uc003tfd.2	-	7	1501	c.1450G>A	c.(1450-1452)GAA>AAA	p.E484K	KIAA0895_uc003tfc.2_Missense_Mutation_p.E471K|KIAA0895_uc011kaw.1_Missense_Mutation_p.E381K|KIAA0895_uc003tfb.2_Missense_Mutation_p.E433K|KIAA0895_uc011kax.1_Missense_Mutation_p.E481K	NM_001100425	NP_001093895	Q8NCT3	K0895_HUMAN	hypothetical protein LOC23366 isoform 1	484											0						CTCATGTTTTCGGTAACTGCC	0.378													46	84					0	0	1	0	0	
ANLN	54443	broad.mit.edu	37	7	36435908	36435908	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:36435908A>C	uc003tff.2	+	2	256	c.52A>C	c.(52-54)AAT>CAT	p.N18H	ANLN_uc011kaz.1_Missense_Mutation_p.N18H|ANLN_uc003tfg.2_Missense_Mutation_p.N18H|ANLN_uc010kxe.2_Missense_Mutation_p.N18H	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	18	Required for ubiquitination.|Nuclear localization.|Interaction with CD2AP.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						CAGGCGAGAGAATCTTCAGAG	0.428													26	53					0	0	1	0	0	
ANLN	54443	broad.mit.edu	37	7	36438957	36438957	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:36438957A>C	uc003tff.2	+	3	646	c.442A>C	c.(442-444)AAA>CAA	p.K148Q	ANLN_uc011kaz.1_Missense_Mutation_p.K60Q|ANLN_uc003tfg.2_Missense_Mutation_p.K148Q|ANLN_uc010kxe.2_Missense_Mutation_p.K148Q	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	148	Nuclear localization.|Interaction with CD2AP.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						ACGTATGCAAAAACTTGCAGA	0.458													22	39					0	0	1	0	0	
ANLN	54443	broad.mit.edu	37	7	36465637	36465637	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:36465637A>C	uc003tff.2	+	19	2966	c.2762A>C	c.(2761-2763)CAT>CCT	p.H921P	ANLN_uc011kaz.1_Missense_Mutation_p.H833P|ANLN_uc003tfg.2_Missense_Mutation_p.H884P|ANLN_uc010kxe.2_Missense_Mutation_p.H883P	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	921	Localization to the cleavage furrow.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						AGCAACATTCATTCTTCAGGT	0.274													18	32					0	0	1	0	0	
TXNDC3	51314	broad.mit.edu	37	7	37901645	37901645	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:37901645G>A	uc003tfn.2	+	7	658	c.286G>A	c.(286-288)GAA>AAA	p.E96K		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	96	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CAAAATTATCGAAAAGATTCA	0.383									Kartagener_syndrome				27	52					0	0	1	0	0	
TXNDC3	51314	broad.mit.edu	37	7	37907312	37907312	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:37907312C>T	uc003tfn.2	+	11	1002	c.630C>T	c.(628-630)TTC>TTT	p.F210F		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	210	NDK 1.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AGTGTGACTTCGAAGAGTTTG	0.388									Kartagener_syndrome				24	42					0	0	1	0	0	
SFRP4	6424	broad.mit.edu	37	7	37947093	37947093	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:37947093C>T	uc003tfo.3	-	6	1415	c.1029G>A	c.(1027-1029)CCG>CCA	p.P343P		NM_003014	NP_003005	Q6FHJ7	SFRP4_HUMAN	secreted frizzled-related  protein 4 precursor	343					brain development|cell differentiation|decidualization|embryo development|epithelium development|gonad development|mammary gland involution|menstrual cycle phase|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell proliferation|negative regulation of JNK cascade|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of sodium-dependent phosphate transport|phosphate ion homeostasis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epidermal cell differentiation|positive regulation of gene expression|positive regulation of receptor internalization|vasculature development|Wnt receptor signaling pathway	cell surface|cytoplasm|extracellular space|nucleus	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(1)	1						ACACTCTTTTCGGGTTTGTTC	0.507													55	90					0	0	1	0	0	
EPDR1	54749	broad.mit.edu	37	7	37988556	37988556	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:37988556T>C	uc003tfp.2	+	2	763	c.744T>C	c.(742-744)CCT>CCC	p.P248P	EPDR1_uc003tfq.2_Intron|EPDR1_uc010kxh.2_Silent_p.P67P	NM_017549	NP_060019	Q9UM22	EPDR1_HUMAN	ependymin related protein 1 precursor	128					cell-matrix adhesion	extracellular region	calcium ion binding			upper_aerodigestive_tract(1)	1						TTGACATTCCTCAAAACTCCA	0.512													35	72					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	7	38288871	38288871	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:38288871C>A	uc003tfu.3	-	2	353	c.118G>T	c.(118-120)GAA>TAA	p.E40*	uc003tfv.2_Nonsense_Mutation_p.E40*|uc003tfw.2_RNA|uc003tfx.1_RNA|uc003tfz.1_RNA					SubName: Full=TARP protein;																		AAGATAATTTCTTGATCAATT	0.348													27	53					4.47668e-21	5.30033e-21	1	1	0	
Unknown	0	broad.mit.edu	37	7	38374606	38374606	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:38374606T>G	uc010kxk.1	-	2		c.511A>C								Homo sapiens cDNA FLJ77147 complete cds, highly similar to Homo sapiens T cell receptor gamma variable 7, mRNA.																		CAAGGCAGATTTTCAGTGTGG	0.428													3	5					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	7	38375163	38375163	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:38375163G>A	uc010kxk.1	-	1		c.75C>T								Homo sapiens cDNA FLJ77147 complete cds, highly similar to Homo sapiens T cell receptor gamma variable 7, mRNA.																		ATGAAGAGGAGCAGAAGACGC	0.557											OREG0017990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	13					0	0	1	0	0	
AMPH	273	broad.mit.edu	37	7	38574563	38574563	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:38574563C>T	uc003tgu.2	-	2	187	c.118G>A	c.(118-120)GAA>AAA	p.E40K	AMPH_uc003tgv.2_Missense_Mutation_p.E40K	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	40	BAR.|Potential.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						ACATATTCTTCGAACTGTTCG	0.338													19	48					0	0	1	0	0	
VPS41	27072	broad.mit.edu	37	7	38791871	38791871	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:38791871G>A	uc003tgy.2	-	22	1857	c.1831C>T	c.(1831-1833)CGT>TGT	p.R611C	VPS41_uc003tgz.2_Missense_Mutation_p.R586C|VPS41_uc010kxn.2_Missense_Mutation_p.R522C	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	611	Clathrin.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						TCATGGTAACGCTGCCCCTTA	0.408													36	85					0	0	1	0	0	
VPS41	27072	broad.mit.edu	37	7	38796580	38796580	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:38796580T>C	uc003tgy.2	-	19	1579	c.1553A>G	c.(1552-1554)TAC>TGC	p.Y518C	VPS41_uc003tgz.2_Missense_Mutation_p.Y493C|VPS41_uc010kxn.2_Missense_Mutation_p.Y429C	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	518					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						GTCATAGGTGTACCTGGTAAT	0.308													18	38					0	0	1	0	0	
CDK13	8621	broad.mit.edu	37	7	40132606	40132606	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:40132606C>T	uc003thh.3	+	13	3740	c.3458C>T	c.(3457-3459)TCG>TTG	p.S1153L	CDK13_uc003thi.3_Missense_Mutation_p.S1093L|CDK13_uc003thj.2_Missense_Mutation_p.S204L|CDK13_uc003thk.2_Missense_Mutation_p.S86L	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	1153					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						CAGGAGTCTTCGAAACCGTTG	0.478													71	150					0	0	1	0	0	
CDK13	8621	broad.mit.edu	37	7	40133992	40133992	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:40133992G>T	uc003thh.3	+	14	4234	c.3952G>T	c.(3952-3954)GAA>TAA	p.E1318*	CDK13_uc003thi.3_Nonsense_Mutation_p.E1258*|CDK13_uc003thj.2_Nonsense_Mutation_p.E369*|CDK13_uc003thk.2_Nonsense_Mutation_p.E251*	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	1318					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						CCCCAAAAGAGAAGGTGGGAT	0.493													65	85					1.12612e-26	1.36447e-26	1	1	0	
C7orf10	79783	broad.mit.edu	37	7	40228169	40228169	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:40228169G>A	uc003thn.1	+	4	347	c.302G>A	c.(301-303)CGA>CAA	p.R101Q	C7orf10_uc003thm.1_Missense_Mutation_p.R108Q|C7orf10_uc003tho.1_Missense_Mutation_p.R101Q	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	108							transferase activity			ovary(2)	2						AGTGTTAACCGAAATAAAAAA	0.338													6	13					0	0	1	0	0	
GLI3	2737	broad.mit.edu	37	7	42003980	42003980	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:42003980G>T	uc011kbh.1	-	15	4782	c.4691C>A	c.(4690-4692)TCT>TAT	p.S1564Y	GLI3_uc011kbg.1_Missense_Mutation_p.S1505Y	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1564					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GGTCAGCAAAGAACTCATGTC	0.517									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				14	26					0.000151284	0.000154703	1	1	0	
GLI3	2737	broad.mit.edu	37	7	42004153	42004153	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:42004153G>A	uc011kbh.1	-	15	4609	c.4518C>T	c.(4516-4518)TTC>TTT	p.F1506F	GLI3_uc011kbg.1_Silent_p.F1447F	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1506	Asp/Glu-rich (acidic).				negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TGATGGCATCGAAGTCAATCT	0.552									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				17	49					0	0	1	0	0	
GLI3	2737	broad.mit.edu	37	7	42004714	42004714	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:42004714T>C	uc011kbh.1	-	15	4048	c.3957A>G	c.(3955-3957)GGA>GGG	p.G1319G	GLI3_uc011kbg.1_Silent_p.G1260G	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1319					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GGTACCCCTGTCCCACTGGGT	0.642									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				14	42					0	0	1	0	0	
GLI3	2737	broad.mit.edu	37	7	42018306	42018306	+	Silent	SNP	G	A	A	rs142888674		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:42018306G>A	uc011kbh.1	-	11	1630	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	GLI3_uc011kbg.1_Silent_p.F454F	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	513	C2H2-type 2.				negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						ACCTGCACACGAACTCCTTCT	0.448									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				23	43					0	0	1	0	0	
C7orf25	79020	broad.mit.edu	37	7	42949774	42949774	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:42949774G>A	uc003thw.2	-	2	1190	c.726C>T	c.(724-726)GTC>GTT	p.V242V	C7orf25_uc010kxq.2_Silent_p.V242V|C7orf25_uc003thx.3_Silent_p.V300V|C7orf25_uc010kxr.2_Silent_p.V300V	NM_024054	NP_076959	Q9BPX7	CG025_HUMAN	hypothetical protein LOC79020 b	242										skin(1)	1						TGCACACATCGACCTTAATTT	0.413													39	106					0	0	1	0	0	
BLVRA	644	broad.mit.edu	37	7	43830923	43830923	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:43830923C>T	uc003tir.2	+	4	293	c.210C>T	c.(208-210)GTC>GTT	p.V70V	BLVRA_uc010kxv.2_Silent_p.V70V	NM_000712	NP_000703	P53004	BIEA_HUMAN	biliverdin reductase A precursor	70					heme catabolic process	cytosol	biliverdin reductase activity|zinc ion binding			ovary(1)	1					NADH(DB00157)	AGGTGGAGGTCGCCTATATCT	0.398													36	77					0	0	1	0	0	
BLVRA	644	broad.mit.edu	37	7	43840110	43840110	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:43840110C>T	uc003tir.2	+	6	482	c.399C>T	c.(397-399)TTC>TTT	p.F133F	BLVRA_uc010kxv.2_Silent_p.F133F	NM_000712	NP_000703	P53004	BIEA_HUMAN	biliverdin reductase A precursor	133					heme catabolic process	cytosol	biliverdin reductase activity|zinc ion binding			ovary(1)	1					NADH(DB00157)	TGGAGGAATTCGCTTTCCTGA	0.483													18	45					0	0	1	0	0	
BLVRA	644	broad.mit.edu	37	7	43846619	43846619	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:43846619A>C	uc003tir.2	+	8	759	c.676A>C	c.(676-678)AAC>CAC	p.N226H	BLVRA_uc010kxv.2_Missense_Mutation_p.N226H	NM_000712	NP_000703	P53004	BIEA_HUMAN	biliverdin reductase A precursor	226					heme catabolic process	cytosol	biliverdin reductase activity|zinc ion binding			ovary(1)	1					NADH(DB00157)	TCTAAAACGAAACAGATATTT	0.363													20	44					0	0	1	0	0	
URGCP	55665	broad.mit.edu	37	7	43921522	43921522	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:43921522G>A	uc003tiw.2	-	4	204	c.147C>T	c.(145-147)TGC>TGT	p.C49C	URGCP_uc003tiu.2_Silent_p.C6C|URGCP_uc003tiv.2_5'UTR|URGCP_uc003tix.2_Silent_p.C40C|URGCP_uc003tiy.2_Silent_p.C6C|URGCP_uc003tiz.2_Silent_p.C6C|URGCP_uc011kbj.1_Silent_p.C6C	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	49					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						aacggaactcgcaatcatctc	0.119													71	149					0	0	1	0	0	
AEBP1	165	broad.mit.edu	37	7	44150348	44150348	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:44150348C>T	uc003tkb.2	+	12	1730	c.1425C>T	c.(1423-1425)TTC>TTT	p.F475F	AEBP1_uc003tkc.3_5'UTR|AEBP1_uc003tkd.2_5'Flank	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	475	Required for DNA-binding and interaction with NFKBIA (By similarity).|F5/8 type C.|Interaction with MAPK1 and MAPK3 (By similarity).				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCACCTTCTTCGTGGGCTTCA	0.582													60	120					0	0	1	0	0	
AEBP1	165	broad.mit.edu	37	7	44153214	44153214	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:44153214G>A	uc003tkb.2	+	21	3136	c.2831G>A	c.(2830-2832)CGA>CAA	p.R944Q	AEBP1_uc003tkc.3_Missense_Mutation_p.R519Q|AEBP1_uc003tkd.2_Missense_Mutation_p.R194Q	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	944	Interaction with PTEN (By similarity).|Required for transcriptional repression (By similarity).				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GATTACTGGCGAATCTTGAAC	0.493													27	48					0	0	1	0	0	
GCK	2645	broad.mit.edu	37	7	44190669	44190669	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:44190669G>A	uc003tkl.2	-	4	839	c.369C>T	c.(367-369)TTC>TTT	p.F123F	GCK_uc003tkj.1_Silent_p.F122F|GCK_uc003tkk.1_Silent_p.F124F	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	123					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding	p.F124L(1)		skin(3)|lung(1)	4						AGATGTAGTCGAAGAGCTGGA	0.592													16	45					0	0	1	0	0	
YKT6	10652	broad.mit.edu	37	7	44251851	44251851	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:44251851G>A	uc003tkm.2	+	7	724	c.567G>A	c.(565-567)CGG>CGA	p.R189R	YKT6_uc011kbv.1_Silent_p.R155R	NM_006555	NP_006546	O15498	YKT6_HUMAN	YKT6 v-SNARE protein	189	v-SNARE coiled-coil homology.				ER to Golgi vesicle-mediated transport|protein transport|retrograde transport, endosome to Golgi|vesicle docking involved in exocytosis|vesicle targeting	cytoplasmic vesicle membrane|cytosol|endoplasmic reticulum|endosome|Golgi membrane|integral to plasma membrane|mitochondrion|SNARE complex	protein-cysteine S-palmitoleyltransferase activity|SNAP receptor activity				0						CCAAGGCCCGGAAACAAAACT	0.542													74	145					0	0	1	0	0	
NPC1L1	29881	broad.mit.edu	37	7	44579499	44579499	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:44579499T>C	uc003tlb.2	-	2	553	c.497A>G	c.(496-498)GAG>GGG	p.E166G	NPC1L1_uc003tlc.2_Missense_Mutation_p.E166G|NPC1L1_uc011kbw.1_Missense_Mutation_p.E166G|NPC1L1_uc003tld.2_Missense_Mutation_p.E166G	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	166	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	ATAGCTCTGCTCGGCAAAGCT	0.617													23	32					0	0	1	0	0	
DDX56	54606	broad.mit.edu	37	7	44609623	44609623	+	Missense_Mutation	SNP	C	T	T	rs144918436		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:44609623C>T	uc003tlg.2	-	8	1758	c.1115G>A	c.(1114-1116)CGA>CAA	p.R372Q	DDX56_uc003tle.2_RNA|DDX56_uc003tlf.2_Missense_Mutation_p.R308Q|DDX56_uc003tlh.2_RNA|DDX56_uc010kyg.2_Missense_Mutation_p.R332Q|DDX56_uc010kyh.1_RNA	NM_019082	NP_061955	Q9NY93	DDX56_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	372	Helicase C-terminal.				rRNA processing	nucleolus	ATP binding|ATP-dependent RNA helicase activity|identical protein binding|RNA binding			upper_aerodigestive_tract(1)	1						CCTGCCAGCTCGATGGATGTA	0.592													15	26					0	0	1	0	0	
TBRG4	9238	broad.mit.edu	37	7	45139956	45139956	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:45139956G>A	uc003tmv.2	-	11	1990	c.1864C>T	c.(1864-1866)CGC>TGC	p.R622C	TBRG4_uc003tmu.2_Missense_Mutation_p.R447C|TBRG4_uc003tmw.2_Missense_Mutation_p.R512C|TBRG4_uc003tmx.2_Missense_Mutation_p.R512C|TBRG4_uc011kcd.1_Missense_Mutation_p.R633C	NM_004749	NP_004740	Q969Z0	TBRG4_HUMAN	cell cycle progression 2 protein isoform 1	622					apoptosis|cell cycle arrest|cellular respiration|G1 phase of mitotic cell cycle|positive regulation of cell proliferation	mitochondrion	ATP binding|protein binding|protein kinase activity				0						ACCGCTTTGCGCATCTTGTCC	0.592													16	22					0	0	1	0	0	
ADCY1	107	broad.mit.edu	37	7	45662318	45662318	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:45662318C>T	uc003tne.3	+	4	1014	c.996C>T	c.(994-996)TTC>TTT	p.F332F	ADCY1_uc003tnd.2_Silent_p.F107F	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	332	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	ATGAGCTCTTCGGCAAGTTCG	0.488													10	22					0	0	1	0	0	
ADCY1	107	broad.mit.edu	37	7	45688281	45688281	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:45688281C>T	uc003tne.3	+	5	1051	c.1033C>T	c.(1033-1035)CGC>TGC	p.R345C	ADCY1_uc003tnd.2_Missense_Mutation_p.R120C	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	345	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GAACCACTGTCGCCGCATCAA	0.592													19	48					0	0	1	0	0	
ADCY1	107	broad.mit.edu	37	7	45743055	45743055	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:45743055C>T	uc003tne.3	+	15	2553	c.2535C>T	c.(2533-2535)GTC>GTT	p.V845V		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	845	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CGGCCCACGTCGCCCAGCACT	0.627													23	48					0	0	1	0	0	
IGFBP1	3484	broad.mit.edu	37	7	45931546	45931546	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:45931546G>T	uc003tnp.2	+	3	828	c.535G>T	c.(535-537)GAA>TAA	p.E179*	IGFBP1_uc003tno.3_Nonsense_Mutation_p.E179*|IGFBP1_uc010kyn.2_Intron	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	179	Thyroglobulin type-1.					extracellular space	insulin-like growth factor binding			lung(1)	1						CTGCCGAATAGAACTCTACAG	0.398											OREG0018048	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	36					1.15088e-07	1.20949e-07	1	1	0	
TNS3	64759	broad.mit.edu	37	7	47341845	47341845	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:47341845G>A	uc003tnv.2	-	23	3850	c.3483C>T	c.(3481-3483)ATC>ATT	p.I1161I	TNS3_uc003tnw.2_Silent_p.I1161I	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	1161						focal adhesion	protein binding			ovary(4)	4						CAAATTTCACGATCACAAGTT	0.448													17	50					0	0	1	0	0	
C7orf65	401335	broad.mit.edu	37	7	47698352	47698352	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:47698352G>T	uc010kyp.1	+	2	167	c.132G>T	c.(130-132)AAG>AAT	p.K44N		NM_001123065	NP_001116537	Q6ZTY9	CG065_HUMAN	hypothetical protein LOC401335	44											0						attcaccaaagaggtaatatt	0.1													12	24					2.80697e-09	3.01096e-09	1	1	0	
PKD1L1	168507	broad.mit.edu	37	7	47842892	47842892	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:47842892G>A	uc003tny.1	-	53	7878	c.7878C>T	c.(7876-7878)TGC>TGT	p.C2626C	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2626	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GAAGATAGACGCATTTTAATG	0.502													18	47					0	0	1	0	0	
PKD1L1	168507	broad.mit.edu	37	7	47894612	47894612	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:47894612A>C	uc003tny.1	-	30	4727	c.4727T>G	c.(4726-4728)TTT>TGT	p.F1576C		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1576	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AAGTAATACAAATGTCGTTTT	0.348													21	51					0	0	1	0	0	
PKD1L1	168507	broad.mit.edu	37	7	47898276	47898276	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:47898276A>G	uc003tny.1	-	27	4357	c.4357T>C	c.(4357-4359)TTG>CTG	p.L1453L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1453	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CTTACCAACAATAAATCTGAG	0.383													30	66					0	0	1	0	0	
PKD1L1	168507	broad.mit.edu	37	7	47927693	47927693	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:47927693C>T	uc003tny.1	-	17	2731	c.2731G>A	c.(2731-2733)GAA>AAA	p.E911K		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	911	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AGAGAGAGTTCGTCATTCCAG	0.393													21	48					0	0	1	0	0	
ABCA13	154664	broad.mit.edu	37	7	48269512	48269512	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:48269512G>A	uc003toq.2	+	7	748	c.723G>A	c.(721-723)TCG>TCA	p.S241S	ABCA13_uc003top.2_3'UTR|ABCA13_uc010kyr.2_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	241					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGACCATTTCGACACTGACAT	0.388													36	70					0	0	1	0	0	
ABCA13	154664	broad.mit.edu	37	7	48311639	48311639	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:48311639A>C	uc003toq.2	+	17	2401	c.2376A>C	c.(2374-2376)AAA>AAC	p.K792N	ABCA13_uc010kyr.2_Missense_Mutation_p.K295N	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	792					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ATGCTCAGAAACTCTTGGAAT	0.383													15	42					0	0	1	0	0	
ABCA13	154664	broad.mit.edu	37	7	48311803	48311803	+	Missense_Mutation	SNP	G	T	T	rs117711958	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:48311803G>T	uc003toq.2	+	17	2565	c.2540G>T	c.(2539-2541)AGA>ATA	p.R847I	ABCA13_uc010kyr.2_Missense_Mutation_p.R350I	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	847					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AAAGGAAAAAGAGCTAAATTG	0.289													19	44					0.006122	0.00618162	1	1	0	
ABCA13	154664	broad.mit.edu	37	7	48315973	48315973	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:48315973T>C	uc003toq.2	+	17	6735	c.6710T>C	c.(6709-6711)TTC>TCC	p.F2237S	ABCA13_uc010kyr.2_Missense_Mutation_p.F1740S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2237					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ATAATGAATTTCATTAACCTT	0.328													5	18					0	0	1	0	0	
ABCA13	154664	broad.mit.edu	37	7	48318153	48318153	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:48318153G>A	uc003toq.2	+	18	7387	c.7362G>A	c.(7360-7362)ACG>ACA	p.T2454T	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2454					transport	integral to membrane	ATP binding|ATPase activity	p.S2454I(1)		ovary(5)|central_nervous_system(4)|skin(1)	10						CTAATCTAACGGATTTGCTTT	0.348													32	104					0	0	1	0	0	
CDC14C	168448	broad.mit.edu	37	7	48964846	48964846	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:48964846G>A	uc010kyv.1	+	1	690	c.578G>A	c.(577-579)CGA>CAA	p.R193Q		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						ATACCAGACCGATTTATTGCC	0.353													31	53					0	0	1	0	0	
ZPBP	11055	broad.mit.edu	37	7	49977177	49977177	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:49977177G>A	uc003tou.2	-	8	1073	c.1003C>T	c.(1003-1005)CAT>TAT	p.H335Y	ZPBP_uc011kci.1_Missense_Mutation_p.H261Y|ZPBP_uc010kyw.2_Missense_Mutation_p.H334Y	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	335					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					TGAAGGCAATGAATTCCATCA	0.328													51	81					0	0	1	0	0	
ZPBP	11055	broad.mit.edu	37	7	50023074	50023074	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:50023074T>G	uc003tou.2	-	7	895	c.825A>C	c.(823-825)GAA>GAC	p.E275D	ZPBP_uc011kci.1_Missense_Mutation_p.E201D|ZPBP_uc010kyw.2_Missense_Mutation_p.E274D	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	275					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					TGCCAAGAATTTCTACTTGTT	0.303													18	37					0	0	1	0	0	
POM121L12	285877	broad.mit.edu	37	7	53103453	53103453	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:53103453C>A	uc003tpz.2	+	1	105	c.89C>A	c.(88-90)GCG>GAG	p.A30E		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	30											0						GACGCCCTGGCGGCTCCCATG	0.692													10	40					3.86212e-05	3.96572e-05	1	1	0	
EGFR	1956	broad.mit.edu	37	7	55221711	55221711	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:55221711G>A	uc003tqk.2	+	7	1001	c.755G>A	c.(754-756)CGC>CAC	p.R252H	EGFR_uc003tqh.2_Missense_Mutation_p.R252H|EGFR_uc003tqi.2_Missense_Mutation_p.R252H|EGFR_uc003tqj.2_Missense_Mutation_p.R252H|EGFR_uc010kzg.1_Missense_Mutation_p.R207H|EGFR_uc011kco.1_Missense_Mutation_p.R199H|EGFR_uc011kcp.1_5'Flank|EGFR_uc011kcq.1_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	252	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)|p.R252C(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TAGGTCTGCCGCAAATTCCGA	0.587		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			37	73					0	0	1	0	0	
SEPT14	346288	broad.mit.edu	37	7	55912390	55912390	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:55912390G>A	uc003tqz.2	-	4	314	c.197C>T	c.(196-198)TCG>TTG	p.S66L		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	66	GTP (By similarity).				cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TATCAGTGTCGATTTTCCAAT	0.358													15	28					0	0	1	0	0	
ZNF713	349075	broad.mit.edu	37	7	55990859	55990859	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:55990859C>A	uc003trc.1	+	2	91	c.53C>A	c.(52-54)TCA>TAA	p.S18*	ZNF713_uc003tra.1_Nonsense_Mutation_p.S31*|MRPS17_uc003trb.2_Nonsense_Mutation_p.S18*	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	18					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TTTCAGGAATCACTGACGTTT	0.517													6	65					3.59834e-05	3.69903e-05	1	1	0	
GBAS	2631	broad.mit.edu	37	7	56045869	56045869	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:56045869C>T	uc003tre.1	+	2	151	c.143C>T	c.(142-144)TCC>TTC	p.S48F	GBAS_uc003trf.1_Missense_Mutation_p.S48F	NM_001483	NP_001474	O75323	NIPS2_HUMAN	nipsnap homolog 2	48						integral to plasma membrane|membrane fraction|mitochondrion	protein binding			central_nervous_system(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TGGCTAAAATCCTTATTTGTC	0.408													33	93					0	0	1	0	0	
ZNF479	90827	broad.mit.edu	37	7	57188256	57188256	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:57188256C>A	uc010kzo.2	-	5	1137	c.866G>T	c.(865-867)AGA>ATA	p.R289I		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	289	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			AGTATGAATTCTCTTGTGGTT	0.453													26	43					2.61193e-14	2.9448e-14	1	1	0	
ZNF716	441234	broad.mit.edu	37	7	57528892	57528892	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:57528892G>T	uc011kdi.1	+	4	837	c.725G>T	c.(724-726)AGA>ATA	p.R242I		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						AAACCCTACAGATGTGAGGAA	0.403													17	14					1.99824e-07	2.09758e-07	1	1	0	
ZNF716	441234	broad.mit.edu	37	7	57529114	57529114	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:57529114G>T	uc011kdi.1	+	4	1059	c.947G>T	c.(946-948)AGA>ATA	p.R316I		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						AACCACAAGAGAATTCATACT	0.408													15	32					1.62849e-17	1.88987e-17	1	1	0	
ZNF716	441234	broad.mit.edu	37	7	57529466	57529466	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:57529466G>A	uc011kdi.1	+	4	1411	c.1299G>A	c.(1297-1299)GAG>GAA	p.E433E		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						ATACTGGAGAGAAACTCTACA	0.383													5	20					0	0	1	0	0	
ZNF716	441234	broad.mit.edu	37	7	57529580	57529580	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:57529580A>C	uc011kdi.1	+	4	1525	c.1413A>C	c.(1411-1413)CAA>CAC	p.Q471H		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						AATGTGACCAAACTTTTAAGT	0.388													3	15					0	0	1	0	0	
ZNF727	442319	broad.mit.edu	37	7	63538506	63538506	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:63538506G>T	uc011kdm.1	+	4	1258	c.1079G>T	c.(1078-1080)AGA>ATA	p.R360I		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	360	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGCCACAAGAGAATTCATATG	0.388													3	8					1	1	1	1	0	
ZNF727	442319	broad.mit.edu	37	7	63538809	63538809	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:63538809T>C	uc011kdm.1	+	4	1561	c.1382T>C	c.(1381-1383)TTT>TCT	p.F461S		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	461	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGCAAAACCTTTACCTGCTCC	0.433													4	5					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	7	63797318	63797318	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:63797318C>T	uc011kdo.1	+	3	321	c.184C>T	c.(184-186)CCT>TCT	p.P62S						SubName: Full=cDNA FLJ57041, moderately similar to Zinc finger protein 92;																		AAGAAAAGAGCCTTGGAAAGT	0.433													3	9					0	0	1	0	0	
ZNF680	340252	broad.mit.edu	37	7	63982024	63982024	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:63982024T>G	uc003tta.2	-	4	1281	c.1108A>C	c.(1108-1110)AAA>CAA	p.K370Q	ZNF680_uc010kzr.2_Missense_Mutation_p.K297Q	NM_178558	NP_848653	Q8NEM1	ZN680_HUMAN	zinc finger protein 680 isoform 1	370	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.118)|all_lung(88;0.243)				GTATGAATTTTCTTATGTCTA	0.353													16	33					0	0	1	0	0	
ZNF107	51427	broad.mit.edu	37	7	64167547	64167547	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:64167547A>G	uc003ttd.2	+	7	1651	c.865A>G	c.(865-867)AAA>GAA	p.K289E	ZNF107_uc003tte.2_Missense_Mutation_p.K289E	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	289	C2H2-type 8; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				AAACCTTAATAAACAGGAGAA	0.343													18	42					0	0	1	0	0	
ZNF107	51427	broad.mit.edu	37	7	64167657	64167657	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:64167657G>T	uc003ttd.2	+	7	1761	c.975G>T	c.(973-975)GAG>GAT	p.E325D	ZNF107_uc003tte.2_Missense_Mutation_p.E325D	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	325					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TAATGGAAGAGAAACCCTACA	0.343													9	36					0.000274275	0.000279565	1	1	0	
ZNF273	10793	broad.mit.edu	37	7	64389307	64389307	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:64389307A>C	uc003tto.2	+	4	1677	c.1601A>C	c.(1600-1602)AAA>ACA	p.K534T	ZNF273_uc003ttl.2_Missense_Mutation_p.K469T|ZNF273_uc003ttn.2_Missense_Mutation_p.K469T	NM_021148	NP_066971	Q14593	ZN273_HUMAN	zinc finger protein 273	534	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(55;0.0295)|all_lung(88;0.0691)				CGACATAAGAAAATTCATACT	0.373													39	70					0	0	1	0	0	
ZNF117	51351	broad.mit.edu	37	7	64439395	64439395	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:64439395C>A	uc003ttr.2	-	4	1839	c.554G>T	c.(553-555)AGA>ATA	p.R185I		NM_015852	NP_056936	Q03924	ZN117_HUMAN	zinc finger protein 117	185	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Lung NSC(55;0.0295)|all_lung(88;0.0691)				AGTATGAATTCTCTTATGTCT	0.353													8	67					3.09899e-07	3.24682e-07	1	1	0	
INTS4L1	285905	broad.mit.edu	37	7	64639744	64639744	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:64639744G>A	uc003ttw.2	+	5		c.627G>A				NR_027393				Homo sapiens cDNA FLJ25037 fis, clone CBL03066.												0						GAAGTGCCTTGATTTCCTAGT	0.438													11	15					0	0	1	0	0	
ZNF92	168374	broad.mit.edu	37	7	64852845	64852845	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:64852845G>T	uc003ttz.2	+	2	177	c.34G>T	c.(34-36)GAA>TAA	p.E12*	ZNF92_uc003tua.2_Intron|ZNF92_uc010kzu.2_Nonsense_Mutation_p.E12*|ZNF92_uc003tub.2_Intron	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	12	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				TGTGAAAATAGAATTCTCTCT	0.353													38	85					1.08052e-11	1.18718e-11	1	1	0	
ZNF92	168374	broad.mit.edu	37	7	64864067	64864067	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:64864067G>A	uc003ttz.2	+	4	1183	c.1040G>A	c.(1039-1041)GGC>GAC	p.G347D	ZNF92_uc003tua.2_Missense_Mutation_p.G278D|ZNF92_uc010kzu.2_Missense_Mutation_p.G315D|ZNF92_uc003tub.2_Missense_Mutation_p.G271D	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	347	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				GAAGAATGTGGCAAAGCCTTT	0.348													13	36					0	0	1	0	0	
ZNF92	168374	broad.mit.edu	37	7	64864785	64864785	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:64864785C>T	uc003ttz.2	+	4	1901	c.1758C>T	c.(1756-1758)ACC>ACT	p.T586T	ZNF92_uc003tua.2_Silent_p.T517T|ZNF92_uc010kzu.2_Silent_p.T554T|ZNF92_uc003tub.2_Silent_p.T510T	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	586	C2H2-type 16; degenerate.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				AACTACAAACCTGAAAGATGT	0.338													13	48					0	0	1	0	0	
GUSB	2990	broad.mit.edu	37	7	65444478	65444478	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:65444478T>G	uc003tun.2	-	4	708	c.632A>C	c.(631-633)TAC>TCC	p.Y211S	GUSB_uc011kdt.1_Intron|GUSB_uc010kzw.1_Missense_Mutation_p.T40P	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	211					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						CAGTCCAGCGTAGTTGAAAAA	0.537													31	60					0	0	1	0	0	
LOC729156	729156	broad.mit.edu	37	7	66290287	66290287	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:66290287T>G	uc003tvj.1	-	8		c.746A>C				NR_003934				Homo sapiens cDNA FLJ36054 fis, clone TESTI2018290.												0						GCTCACCATATCATCTGTTGA	0.592													4	6					0	0	1	0	0	
LOC729156	729156	broad.mit.edu	37	7	66304891	66304891	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:66304891G>A	uc003tvj.1	-	2		c.182C>T				NR_003934				Homo sapiens cDNA FLJ36054 fis, clone TESTI2018290.												0						CACCTGGCCCGCAGTCTTCAC	0.617													24	37					0	0	1	0	0	
AUTS2	26053	broad.mit.edu	37	7	70228040	70228040	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:70228040G>A	uc003tvw.3	+	7	1670	c.927G>A	c.(925-927)CCG>CCA	p.P309P	AUTS2_uc003tvx.3_Silent_p.P309P	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	309										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		TACCCCAGCCGCAGACGGAGC	0.612													32	54					0	0	1	0	0	
AUTS2	26053	broad.mit.edu	37	7	70252212	70252212	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:70252212G>A	uc003tvw.3	+	18	3069	c.2326G>A	c.(2326-2328)GGC>AGC	p.G776S	AUTS2_uc003tvx.3_Missense_Mutation_p.G752S|AUTS2_uc011keg.1_Missense_Mutation_p.G228S	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	776										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CTCAATGTTCGGCCACAAGGA	0.493													21	33					0	0	1	0	0	
WBSCR17	64409	broad.mit.edu	37	7	71177108	71177108	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:71177108A>G	uc003tvy.2	+	11	1774	c.1774A>G	c.(1774-1776)ACC>GCC	p.T592A	WBSCR17_uc003tvz.2_Missense_Mutation_p.T291A	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	592	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TCAGAGGTGGACCATTAAGAA	0.637													22	45					0	0	1	0	0	
TYW1B	441250	broad.mit.edu	37	7	72081692	72081692	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:72081692C>T	uc011kej.1	-	16	1909	c.1750G>A	c.(1750-1752)GAA>AAA	p.E584K	TYW1B_uc011keh.1_Missense_Mutation_p.E422K|TYW1B_uc011kei.1_Missense_Mutation_p.E210K	NM_001145440	NP_001138912	Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B isoform	584					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity				0						TTAGAGTGTTCGTGTTCACAT	0.473													35	77					0	0	1	0	0	
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657577	72657577	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:72657577G>A	uc003txs.1	-	13	2335	c.1407C>T	c.(1405-1407)ATC>ATT	p.I469I	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						gcacactgtcgatcttcgtgg	0													51	78					0	0	1	0	0	
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657673	72657673	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:72657673G>A	uc003txs.1	-	13	2239	c.1311C>T	c.(1309-1311)ATC>ATT	p.I437I	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						tgagttccgcgattttgggaa	0													60	104					0	0	1	0	0	
BAZ1B	9031	broad.mit.edu	37	7	72863979	72863979	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:72863979T>G	uc003tyc.2	-	15	3966	c.3621A>C	c.(3619-3621)AAA>AAC	p.K1207N		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	1207	PHD-type.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				GGTGGAAGGCTTTATTACACT	0.512													32	39					0	0	1	0	0	
MLXIPL	51085	broad.mit.edu	37	7	73008305	73008305	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:73008305T>C	uc003tyn.1	-	17	2497	c.2449A>G	c.(2449-2451)AAC>GAC	p.N817D	MLXIPL_uc003tyj.1_Missense_Mutation_p.N196D|MLXIPL_uc003tyk.1_Missense_Mutation_p.N796D|MLXIPL_uc003tyl.1_Missense_Mutation_p.N815D|MLXIPL_uc003tym.1_Missense_Mutation_p.N798D|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_3'UTR	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	817					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				CGTAGGGAGTTCAGGACAGCT	0.602													18	28					0	0	1	0	0	
WBSCR28	135886	broad.mit.edu	37	7	73279635	73279635	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:73279635G>T	uc003tzk.2	+	2	421	c.385G>T	c.(385-387)GAT>TAT	p.D129Y	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_Missense_Mutation_p.D28Y	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	129						integral to membrane				breast(1)	1		Lung NSC(55;0.159)				CATCTGGACAGATCTGTTTTT	0.612													17	39					2.35188e-11	2.57851e-11	1	1	0	
EIF4H	7458	broad.mit.edu	37	7	73604598	73604598	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:73604598C>A	uc003uad.1	+	5	439	c.431C>A	c.(430-432)TCT>TAT	p.S144Y	RFC2_uc011kfa.1_Intron|EIF4H_uc011kfg.1_3'UTR|EIF4H_uc010lbm.2_Intron|EIF4H_uc003uae.1_Intron|EIF4H_uc003uaf.1_Intron|MIR590_hsa-mir-590|MI0003602_5'Flank	NM_022170	NP_071496	Q15056	IF4H_HUMAN	eukaryotic translation initiation factor 4H	144	HHV-1 Vhs binding site.				interspecies interaction between organisms|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0						TCTCGAGAATCTAGAGGTGGA	0.413													24	52					4.59853e-10	4.97375e-10	1	1	0	
GTF2IRD1	9569	broad.mit.edu	37	7	73960133	73960133	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:73960133C>T	uc003uaq.2	+	16	2119	c.1726C>T	c.(1726-1728)CGA>TGA	p.R576*	GTF2IRD1_uc010lbq.2_Nonsense_Mutation_p.R608*|GTF2IRD1_uc003uap.2_Nonsense_Mutation_p.R576*|GTF2IRD1_uc003uar.1_Nonsense_Mutation_p.R576*	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	576	GTF2I-like 3.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						CTTCAACACACGATACGGTGA	0.622													14	22					0	0	1	0	0	
GTF2IRD1	9569	broad.mit.edu	37	7	74015485	74015485	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:74015485C>T	uc003uaq.2	+	26	3182	c.2789C>T	c.(2788-2790)TCG>TTG	p.S930L	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.S947L|GTF2IRD1_uc003uap.2_Missense_Mutation_p.S915L|GTF2IRD1_uc003uar.1_Missense_Mutation_p.S915L	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	930	Ser-rich.			Missing: Cytoplasmic localization.		nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						TCAGTGGCATCGGCCAACCAG	0.463													4	12					0	0	1	0	0	
POM121C	100101267	broad.mit.edu	37	7	75052307	75052307	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:75052307C>T	uc003udk.3	-	13	2113	c.1228G>A	c.(1228-1230)GAC>AAC	p.D410N		NM_001099415	NP_001092885	A8CG34	P121C_HUMAN	POM121 membrane glycoprotein (rat)-like	652	Pore side (Potential).				mRNA transport|protein transport|transmembrane transport	endoplasmic reticulum membrane|nuclear membrane|nuclear pore	protein binding				0						GCCTTGGTGTCAGTGGCTGGT	0.627													21	34					0	0	1	0	0	
CCDC146	57639	broad.mit.edu	37	7	76916866	76916866	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:76916866A>C	uc003uga.2	+	17	2514	c.2387A>C	c.(2386-2388)AAG>ACG	p.K796T	CCDC146_uc010ldp.2_Missense_Mutation_p.K510T|CCDC146_uc003ugc.2_Missense_Mutation_p.K133T	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	796	Potential.									ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				CAGGGCTGCAAGCAGGACACA	0.522													11	40					0	0	1	0	0	
CCDC146	57639	broad.mit.edu	37	7	76922474	76922474	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:76922474G>A	uc003uga.2	+	18	2748	c.2621G>A	c.(2620-2622)CGA>CAA	p.R874Q	CCDC146_uc010ldp.2_Missense_Mutation_p.R588Q|CCDC146_uc003ugc.2_Missense_Mutation_p.R211Q	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	874										ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				AAAGTCCTTCGAGATGAAGAA	0.453													43	106					0	0	1	0	0	
PTPN12	5782	broad.mit.edu	37	7	77268548	77268548	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:77268548G>A	uc003ugh.2	+	18	2385	c.2294G>A	c.(2293-2295)CGA>CAA	p.R765Q	PTPN12_uc011kgp.1_Missense_Mutation_p.R646Q|PTPN12_uc011kgq.1_Missense_Mutation_p.R635Q|PTPN12_uc010lds.2_Missense_Mutation_p.R497Q	NM_002835	NP_002826	Q05209	PTN12_HUMAN	protein tyrosine phosphatase, non-receptor type	765						soluble fraction	non-membrane spanning protein tyrosine phosphatase activity|SH3 domain binding			ovary(1)|breast(1)|pancreas(1)	3						TTTGGTAATCGATGTGGAAAA	0.388													19	45					0	0	1	0	0	
TMEM60	85025	broad.mit.edu	37	7	77423307	77423307	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:77423307G>T	uc003ugn.2	-	2	611	c.384C>A	c.(382-384)GTC>GTA	p.V128V		NM_032936	NP_116325	Q9H2L4	TMM60_HUMAN	transmembrane protein 60	128	Helical; (Potential).					integral to membrane					0						TCACAAAAAAGACATTATATC	0.383													30	64					2.2171e-23	2.65456e-23	1	1	0	
MAGI2	9863	broad.mit.edu	37	7	77789394	77789394	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:77789394G>A	uc003ugx.2	-	16	3047	c.2793C>T	c.(2791-2793)TTC>TTT	p.F931F	MAGI2_uc003ugy.2_Silent_p.F917F|MAGI2_uc010ldx.1_Silent_p.F524F	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	931	PDZ 5.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGACAAAGCCGAAGCCCTCAT	0.517													29	53					0	0	1	0	0	
MAGI2	9863	broad.mit.edu	37	7	77789413	77789413	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:77789413C>T	uc003ugx.2	-	16	3028	c.2774G>A	c.(2773-2775)CGC>CAC	p.R925H	MAGI2_uc003ugy.2_Missense_Mutation_p.R911H|MAGI2_uc010ldx.1_Missense_Mutation_p.R518H	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	925	PDZ 5.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				ATTCTCTTTGCGGTGAATGAC	0.532													22	51					0	0	1	0	0	
MAGI2	9863	broad.mit.edu	37	7	77830508	77830508	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:77830508A>C	uc003ugx.2	-	11	2304	c.2050T>G	c.(2050-2052)TTC>GTC	p.F684V	MAGI2_uc003ugy.2_Missense_Mutation_p.F684V|MAGI2_uc010ldx.1_Missense_Mutation_p.F293V|MAGI2_uc010ldy.1_Missense_Mutation_p.F293V	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	684						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GGAGAAAAGAAACCTGTAATA	0.264													15	39					0	0	1	0	0	
SEMA3C	10512	broad.mit.edu	37	7	80418725	80418725	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:80418725C>T	uc003uhj.2	-	12	1813	c.1251G>A	c.(1249-1251)AGG>AGA	p.R417R	SEMA3C_uc011kgw.1_Silent_p.R435R	NM_006379	NP_006370	Q99985	SEM3C_HUMAN	semaphorin 3C precursor	417	Sema.				immune response|response to drug	membrane	receptor activity			ovary(1)	1						CAATCAAAGGCCTTTTGTGGA	0.448													42	88					0	0	1	0	0	
PCLO	27445	broad.mit.edu	37	7	82390067	82390067	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:82390067G>T	uc003uhx.2	-	24	15465	c.15176C>A	c.(15175-15177)TCT>TAT	p.S5059Y		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4982	C2 2.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTTTGGGTAGAAATATTCAT	0.299													14	28					1.36491e-13	1.52772e-13	1	1	0	
PCLO	27445	broad.mit.edu	37	7	82578855	82578855	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:82578855C>T	uc003uhx.2	-	6	11338	c.11049G>A	c.(11047-11049)AAG>AAA	p.K3683K	PCLO_uc003uhv.2_Silent_p.K3683K|PCLO_uc010lec.2_Silent_p.K648K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3614					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GACTCAGAGGCTTGGGGTCAG	0.473													86	173					0	0	1	0	0	
PCLO	27445	broad.mit.edu	37	7	82579967	82579967	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:82579967G>A	uc003uhx.2	-	6	10226	c.9937C>T	c.(9937-9939)CGG>TGG	p.R3313W	PCLO_uc003uhv.2_Missense_Mutation_p.R3313W|PCLO_uc010lec.2_Missense_Mutation_p.R278W	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3244	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TAGATCTGCCGAATCTTTTGC	0.493													11	84					0	0	1	0	0	
PCLO	27445	broad.mit.edu	37	7	82583601	82583601	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:82583601G>A	uc003uhx.2	-	5	6957	c.6668C>T	c.(6667-6669)TCT>TTT	p.S2223F	PCLO_uc003uhv.2_Missense_Mutation_p.S2223F|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2154					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AATTTCCTCAGAATCTTCAAA	0.403													8	25					0	0	1	0	0	
PCLO	27445	broad.mit.edu	37	7	82764042	82764042	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:82764042C>T	uc003uhx.2	-	3	3113	c.2824G>A	c.(2824-2826)GCA>ACA	p.A942T	PCLO_uc003uhv.2_Missense_Mutation_p.A942T	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	888	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAATTTGATGCCTGGCTGAAG	0.512													14	33					0	0	1	0	0	
PCLO	27445	broad.mit.edu	37	7	82764221	82764221	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:82764221C>T	uc003uhx.2	-	3	2934	c.2645G>A	c.(2644-2646)CGA>CAA	p.R882Q	PCLO_uc003uhv.2_Missense_Mutation_p.R882Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	828	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGCGGTAGGTCGTGGGCCAGG	0.517													91	227					0	0	1	0	0	
SEMA3E	9723	broad.mit.edu	37	7	83032082	83032082	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:83032082G>A	uc003uhy.1	-	10	1475	c.1009C>T	c.(1009-1011)CGA>TGA	p.R337*		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	337	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				GCATGCCCTCGAAAAATATTA	0.403													13	29					0	0	1	0	0	
SEMA3A	10371	broad.mit.edu	37	7	83606510	83606510	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:83606510C>T	uc003uhz.2	-	15	1970	c.1655G>A	c.(1654-1656)CGC>CAC	p.R552H		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	552					axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						TCGTCTTGTGCGTCTGAAGCA	0.328													23	81					0	0	1	0	0	
SEMA3A	10371	broad.mit.edu	37	7	83764139	83764139	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:83764139C>T	uc003uhz.2	-	2	556	c.241G>A	c.(241-243)GAC>AAC	p.D81N		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	81	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						TTAACCAGGTCGAATGAAAAT	0.358													30	49					0	0	1	0	0	
GRM3	2913	broad.mit.edu	37	7	86416107	86416107	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:86416107C>T	uc003uid.2	+	3	2098	c.999C>T	c.(997-999)TTC>TTT	p.F333F	GRM3_uc010lef.2_Silent_p.F331F|GRM3_uc010leg.2_Silent_p.F205F|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	333	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TCCGCCAGTTCGACCGCTACT	0.627													13	29					0	0	1	0	0	
GRM3	2913	broad.mit.edu	37	7	86468223	86468223	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:86468223C>T	uc003uid.2	+	4	2492	c.1393C>T	c.(1393-1395)CGA>TGA	p.R465*	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Nonsense_Mutation_p.R337*|GRM3_uc010leh.2_Nonsense_Mutation_p.R57*	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	465	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TGGAATGGGGCGATACAACGT	0.383													16	27					0	0	1	0	0	
KIAA1324L	222223	broad.mit.edu	37	7	86521160	86521160	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:86521160T>G	uc011kha.1	-	21	3095	c.2910A>C	c.(2908-2910)AAA>AAC	p.K970N	KIAA1324L_uc003uif.1_Missense_Mutation_p.K730N|KIAA1324L_uc011kgz.1_Missense_Mutation_p.K856N|KIAA1324L_uc003uie.2_Missense_Mutation_p.K803N	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	970	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					GTTCACACTCTTTTGAGTTAG	0.318													24	35					0	0	1	0	0	
CROT	54677	broad.mit.edu	37	7	87005144	87005144	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87005144G>A	uc003uit.2	+	9	996	c.751G>A	c.(751-753)GCA>ACA	p.A251T	CROT_uc003uiu.2_Missense_Mutation_p.A279T	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase	251					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	TGCCCTTTAGGCACGAGAATA	0.353													7	57					0	0	1	0	0	
CROT	54677	broad.mit.edu	37	7	87020970	87020970	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87020970G>A	uc003uit.2	+	14	1612	c.1367G>A	c.(1366-1368)CGA>CAA	p.R456Q	CROT_uc003uiu.2_Missense_Mutation_p.R484Q	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase	456					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	GAGACTATGCGATCATGCACA	0.388													14	65					0	0	1	0	0	
ABCB4	5244	broad.mit.edu	37	7	87092105	87092105	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87092105A>C	uc003uiv.1	-	4	331	c.255T>G	c.(253-255)TTT>TTG	p.F85L	ABCB4_uc003uiw.1_Missense_Mutation_p.F85L|ABCB4_uc003uix.1_Missense_Mutation_p.F85L|ABCB4_uc003uiy.2_Missense_Mutation_p.F85L	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	85	Extracellular (By similarity).|ABC transmembrane type-1 1.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CAGTATCAACAAATTTGTCAG	0.388													6	77					0	0	1	0	0	
ABCB1	5243	broad.mit.edu	37	7	87144576	87144576	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87144576G>A	uc003uiz.1	-	26	3671	c.3253C>T	c.(3253-3255)CGG>TGG	p.R1085W	ABCB1_uc011khc.1_Missense_Mutation_p.R1021W	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	1085	Cytoplasmic (Potential).|ABC transporter 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity	p.R1085W(1)		ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TCGTAGAACCGCTCCAGGAGC	0.527													23	49					0	0	1	0	0	
ABCB1	5243	broad.mit.edu	37	7	87150189	87150189	+	Missense_Mutation	SNP	C	T	T	rs147487745		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87150189C>T	uc003uiz.1	-	23	3107	c.2689G>A	c.(2689-2691)GCT>ACT	p.A897T	ABCB1_uc011khc.1_Missense_Mutation_p.A833T	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	897	ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	GCTTCAGTAGCGATCTGTAAC	0.368													22	36					0	0	1	0	0	
ABCB1	5243	broad.mit.edu	37	7	87178674	87178674	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87178674G>A	uc003uiz.1	-	15	2133	c.1715C>T	c.(1714-1716)GCT>GTT	p.A572V	ABCB1_uc011khc.1_Missense_Mutation_p.A508V	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	572	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CTTATCCAGAGCCACCTGAAC	0.463													18	34					0	0	1	0	0	
RUNDC3B	154661	broad.mit.edu	37	7	87436797	87436797	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87436797A>G	uc003ujb.2	+	10	1528	c.1117A>G	c.(1117-1119)ACG>GCG	p.T373A	RUNDC3B_uc011khd.1_Missense_Mutation_p.T356A|RUNDC3B_uc011khe.1_Missense_Mutation_p.T356A|RUNDC3B_uc003ujc.2_Intron|RUNDC3B_uc003ujd.2_Intron	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	373										skin(1)	1	Esophageal squamous(14;0.00164)					TGCCTTGGATACGTTGCTTTA	0.378													31	62					0	0	1	0	0	
RUNDC3B	154661	broad.mit.edu	37	7	87459269	87459269	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87459269T>G	uc003ujb.2	+	12	1757	c.1346T>G	c.(1345-1347)CTA>CGA	p.L449R	RUNDC3B_uc011khe.1_Missense_Mutation_p.L432R|RUNDC3B_uc003ujc.2_Missense_Mutation_p.L383R|RUNDC3B_uc003ujd.2_Missense_Mutation_p.L305R	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	449										skin(1)	1	Esophageal squamous(14;0.00164)					TACAAGTCTCTAACAAGCTTA	0.373													27	74					0	0	1	0	0	
ADAM22	53616	broad.mit.edu	37	7	87759747	87759747	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87759747G>A	uc003ujn.2	+	10	877	c.798G>A	c.(796-798)GCG>GCA	p.A266A	ADAM22_uc003ujj.1_Silent_p.A266A|ADAM22_uc003ujk.1_Silent_p.A266A|ADAM22_uc003ujl.1_Silent_p.A266A|ADAM22_uc003ujm.2_Silent_p.A266A|ADAM22_uc003ujo.2_Silent_p.A266A|ADAM22_uc003ujp.1_Silent_p.A318A	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	266	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			ATACCTATGCGAAATCTGTGG	0.353													25	74					0	0	1	0	0	
ADAM22	53616	broad.mit.edu	37	7	87811315	87811315	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87811315T>G	uc003ujn.2	+	29	2631	c.2552T>G	c.(2551-2553)TTT>TGT	p.F851C	ADAM22_uc003ujk.1_Missense_Mutation_p.F851C|ADAM22_uc003ujl.1_Missense_Mutation_p.F815C|ADAM22_uc003ujm.2_Missense_Mutation_p.F815C|ADAM22_uc003ujo.2_Missense_Mutation_p.F815C|ADAM22_uc003ujp.1_Missense_Mutation_p.F903C	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	851	Cytoplasmic (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			GGCAAAAGATTTAGACCTCGG	0.383													27	56					0	0	1	0	0	
SRI	6717	broad.mit.edu	37	7	87840206	87840206	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87840206T>C	uc003ujq.1	-	4	292	c.240A>G	c.(238-240)TCA>TCG	p.S80S	SRI_uc011khg.1_Silent_p.S80S|SRI_uc003ujr.1_Silent_p.S65S|SRI_uc011khh.1_Silent_p.S65S|SRI_uc010lej.1_Silent_p.S80S	NM_003130	NP_003121	P30626	SORCN_HUMAN	sorcin isoform a	80	EF-hand 2.				heart development|intracellular sequestering of iron ion|muscle organ development|regulation of action potential|regulation of heart contraction|regulation of striated muscle contraction|signal transduction	sarcoplasmic reticulum membrane	calcium channel regulator activity|calcium ion binding|receptor binding			upper_aerodigestive_tract(1)	1	Esophageal squamous(14;0.00202)					CATCCAGCATTGAAACCATAA	0.294													39	34					0	0	1	0	0	
STEAP4	79689	broad.mit.edu	37	7	87912071	87912071	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:87912071C>T	uc003ujs.2	-	3	974	c.869G>A	c.(868-870)CGA>CAA	p.R290Q	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Missense_Mutation_p.R290Q	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	290	Ferric oxidoreductase.				fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					AAGCTGCTTTCGGCAAAGCAT	0.473													23	44					0	0	1	0	0	
ZNF804B	219578	broad.mit.edu	37	7	88962747	88962747	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:88962747T>A	uc011khi.1	+	4	989	c.451T>A	c.(451-453)TTC>ATC	p.F151I		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	151						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GCAAGGAATTTTCCCCATTAA	0.398										HNSCC(36;0.09)			21	53					0	0	1	0	0	
ZNF804B	219578	broad.mit.edu	37	7	88964416	88964416	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:88964416G>T	uc011khi.1	+	4	2658	c.2120G>T	c.(2119-2121)AGA>ATA	p.R707I		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	707						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TGTTTGAGTAGATATTCTTCC	0.408										HNSCC(36;0.09)			17	37					4.7546e-09	5.08881e-09	1	1	0	
ZNF804B	219578	broad.mit.edu	37	7	88965794	88965794	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:88965794G>A	uc011khi.1	+	4	4036	c.3498G>A	c.(3496-3498)CAG>CAA	p.Q1166Q		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1166						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TACAAGCCCAGCAGCATATGC	0.448										HNSCC(36;0.09)			29	66					0	0	1	0	0	
ZNF804B	219578	broad.mit.edu	37	7	88966008	88966008	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:88966008C>A	uc011khi.1	+	4	4250	c.3712C>A	c.(3712-3714)CTT>ATT	p.L1238I		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1238						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TCTACATCCTCTTTCACAGGC	0.458										HNSCC(36;0.09)			54	122					2.84144e-21	3.36763e-21	1	1	0	
STEAP1	26872	broad.mit.edu	37	7	89790273	89790273	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:89790273T>G	uc003ujx.2	+	3	439	c.239T>G	c.(238-240)ATT>AGT	p.I80S	STEAP1_uc010lem.2_Missense_Mutation_p.I80S	NM_012449	NP_036581	Q9UHE8	STEA1_HUMAN	six transmembrane epithelial antigen of the	80	Helical; (Potential).				electron transport chain|ion transport|iron ion homeostasis	cell-cell junction|endosome membrane|integral to plasma membrane	channel activity|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	all_hematologic(106;0.112)					ATAGCTGCTATTATAGCATCT	0.403													56	118					0	0	1	0	0	
AKAP9	10142	broad.mit.edu	37	7	91632062	91632062	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:91632062A>C	uc003ulg.2	+	8	3056	c.2831A>C	c.(2830-2832)AAA>ACA	p.K944T	AKAP9_uc003ule.2_Missense_Mutation_p.K956T|AKAP9_uc003ulf.2_Missense_Mutation_p.K944T|AKAP9_uc003uli.2_Missense_Mutation_p.K569T	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	956	Glu-rich.|Potential.			K -> N (in Ref. 3; BAA78718).	G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CTCATGGAAAAACTTGAGGTA	0.353			T	BRAF	papillary thyroid								35	47					0	0	1	0	0	
AKAP9	10142	broad.mit.edu	37	7	91672072	91672072	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:91672072T>G	uc003ulg.2	+	20	5374	c.5149T>G	c.(5149-5151)TTG>GTG	p.L1717V	AKAP9_uc003ulf.2_Missense_Mutation_p.L1717V|AKAP9_uc003uli.2_Missense_Mutation_p.L1342V	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1729					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TCCTGAGATTTTGTCTAATGA	0.299			T	BRAF	papillary thyroid								29	63					0	0	1	0	0	
AKAP9	10142	broad.mit.edu	37	7	91699510	91699510	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:91699510C>A	uc003ulg.2	+	27	6722	c.6497C>A	c.(6496-6498)ACT>AAT	p.T2166N	AKAP9_uc003ulf.2_Intron|AKAP9_uc003uli.2_Missense_Mutation_p.T1789N|AKAP9_uc003ulj.2_Intron	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2178	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGTGCAGATACTTTTCAAAAG	0.348			T	BRAF	papillary thyroid								36	92					6.90743e-12	7.60866e-12	1	1	0	
AKAP9	10142	broad.mit.edu	37	7	91707053	91707053	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:91707053C>T	uc003ulg.2	+	30	7034	c.6809C>T	c.(6808-6810)GCC>GTC	p.A2270V	AKAP9_uc003ulf.2_Missense_Mutation_p.A2262V|AKAP9_uc003uli.2_Missense_Mutation_p.A1893V|AKAP9_uc003ulj.2_Missense_Mutation_p.A40V	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2282	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GAATCTGATGCCATGTCTACT	0.343			T	BRAF	papillary thyroid								31	83					0	0	1	0	0	
AKAP9	10142	broad.mit.edu	37	7	91708440	91708440	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:91708440A>G	uc003ulg.2	+	31	7218	c.6993A>G	c.(6991-6993)ATA>ATG	p.I2331M	AKAP9_uc003ulf.2_Missense_Mutation_p.I2323M|AKAP9_uc003uli.2_Missense_Mutation_p.I1954M|AKAP9_uc003ulj.2_Missense_Mutation_p.I101M	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2343	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AAACCCAAATAGAATGTTTGA	0.289			T	BRAF	papillary thyroid								25	32					0	0	1	0	0	
PEX1	5189	broad.mit.edu	37	7	92143246	92143246	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:92143246T>G	uc003uly.2	-	6	1371	c.1275A>C	c.(1273-1275)GAA>GAC	p.E425D	PEX1_uc011khr.1_Missense_Mutation_p.E217D|PEX1_uc010ley.2_Missense_Mutation_p.E425D|PEX1_uc011khs.1_Missense_Mutation_p.E103D|PEX1_uc011kht.1_RNA	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	425					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			CGGCATGCATTTCTATATTTA	0.303													40	92					0	0	1	0	0	
CDK6	1021	broad.mit.edu	37	7	92247479	92247479	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:92247479A>C	uc011khw.1	-	7	1153	c.741T>G	c.(739-741)GTT>GTG	p.V247V	CDK6_uc010lez.2_Silent_p.V247V	NM_001259	NP_001250	Q00534	CDK6_HUMAN	cyclin-dependent kinase 6	247	Protein kinase.				cell dedifferentiation|cell division|G1 phase of mitotic cell cycle|gliogenesis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|negative regulation of osteoblast differentiation|positive regulation of cell-matrix adhesion|positive regulation of fibroblast proliferation|regulation of erythrocyte differentiation|regulation of gene expression|response to virus	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleus|ruffle	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			central_nervous_system(1)|skin(1)	2	all_cancers(62;8.72e-12)|all_epithelial(64;3.65e-10)|Breast(17;0.000675)|all_lung(186;0.0392)|Lung NSC(181;0.053)|all_neural(327;0.219)|all_hematologic(106;0.237)		STAD - Stomach adenocarcinoma(4;6.16e-07)|GBM - Glioblastoma multiforme(5;1.2e-06)|all cancers(6;3.1e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			TGGGAAGGGCAACATCTCTAG	0.438			T	MLLT10	ALL								10	65					0	0	1	0	0	
SAMD9L	219285	broad.mit.edu	37	7	92762803	92762803	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:92762803G>A	uc003umh.1	-	5	3698	c.2482C>T	c.(2482-2484)CGA>TGA	p.R828*	SAMD9L_uc003umj.1_Nonsense_Mutation_p.R828*|SAMD9L_uc003umi.1_Nonsense_Mutation_p.R828*|SAMD9L_uc010lfb.1_Nonsense_Mutation_p.R828*|SAMD9L_uc003umk.1_Nonsense_Mutation_p.R828*|SAMD9L_uc010lfc.1_Nonsense_Mutation_p.R828*|SAMD9L_uc010lfd.1_Nonsense_Mutation_p.R828*|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	828										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TTTTCATATCGCAAATCCTTT	0.358													87	42					0	0	1	0	0	
SAMD9L	219285	broad.mit.edu	37	7	92762825	92762825	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:92762825G>A	uc003umh.1	-	5	3676	c.2460C>T	c.(2458-2460)TCC>TCT	p.S820S	SAMD9L_uc003umj.1_Silent_p.S820S|SAMD9L_uc003umi.1_Silent_p.S820S|SAMD9L_uc010lfb.1_Silent_p.S820S|SAMD9L_uc003umk.1_Silent_p.S820S|SAMD9L_uc010lfc.1_Silent_p.S820S|SAMD9L_uc010lfd.1_Silent_p.S820S|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	820										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CTGCTAAAACGGAATGGATGG	0.378													43	87					0	0	1	0	0	
CCDC132	55610	broad.mit.edu	37	7	92923915	92923915	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:92923915G>T	uc003umo.2	+	14	1262	c.1134G>T	c.(1132-1134)AAG>AAT	p.K378N	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.K348N|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.K98N	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	378											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			ACATAAAAAAGAAATTAGAAC	0.264													54	109					1.3268e-25	1.601e-25	1	1	0	
COL1A2	1278	broad.mit.edu	37	7	94043236	94043236	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:94043236C>T	uc003ung.1	+	28	2113	c.1642C>T	c.(1642-1644)CCC>TCC	p.P548S	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	548					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TGAACAGGGTCCCCCTGGTCC	0.448										HNSCC(75;0.22)			14	25					0	0	1	0	0	
COL1A2	1278	broad.mit.edu	37	7	94057135	94057135	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:94057135C>A	uc003ung.1	+	49	3935	c.3464C>A	c.(3463-3465)TCT>TAT	p.S1155Y	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1155	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CCTGAAGGCTCTAGAAAGAAC	0.522										HNSCC(75;0.22)			21	43					1.96292e-10	2.12899e-10	1	1	0	
PEG10	23089	broad.mit.edu	37	7	94293682	94293682	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:94293682G>A	uc011kie.1	+	2	1259	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K		NM_001040152	NP_001035242	Q86TG7	PEG10_HUMAN	paternally expressed 10 isoform RF1	272	Necessary for interaction with ALK1.				apoptosis|cell differentiation|negative regulation of transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			AGATCCAACCGAGCCGGTGGG	0.622													6	10					0	0	1	0	0	
PPP1R9A	55607	broad.mit.edu	37	7	94540365	94540365	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:94540365G>A	uc003unp.2	+	2	1222	c.940G>A	c.(940-942)GAC>AAC	p.D314N	PPP1R9A_uc010lfj.2_Missense_Mutation_p.D314N|PPP1R9A_uc011kif.1_Missense_Mutation_p.D314N|PPP1R9A_uc003unq.2_Missense_Mutation_p.D314N|PPP1R9A_uc011kig.1_Missense_Mutation_p.D314N	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	314						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			ACAGACTCCCGACAGCATTGA	0.473										HNSCC(28;0.073)			12	48					0	0	1	0	0	
PON3	5446	broad.mit.edu	37	7	95001600	95001600	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:95001600T>G	uc003unt.2	-	4	277	c.252A>C	c.(250-252)AAA>AAC	p.K84N	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Missense_Mutation_p.K132N	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	84					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			TCAAGAAGATTTTTCCTGGTT	0.363													40	51					0	0	1	0	0	
PDK4	5166	broad.mit.edu	37	7	95223071	95223071	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:95223071C>T	uc003uoa.2	-	3	604	c.284G>A	c.(283-285)AGC>AAC	p.S95N	PDK4_uc003unz.2_5'Flank	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	95					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			ATCCATCAGGCTCTGTATATA	0.318													26	58					0	0	1	0	0	
PDK4	5166	broad.mit.edu	37	7	95224379	95224379	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:95224379C>T	uc003uoa.2	-	2	548	c.228G>A	c.(226-228)CCG>CCA	p.P76P	PDK4_uc003unz.2_5'Flank	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	76					glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			CTAATTGGGTCGGGAGGATAT	0.393													52	103					0	0	1	0	0	
ASNS	440	broad.mit.edu	37	7	97488685	97488685	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:97488685C>T	uc003uot.3	-	5	1019	c.513G>A	c.(511-513)GCG>GCA	p.A171A	ASNS_uc011kin.1_Silent_p.A88A|ASNS_uc003uou.3_Silent_p.A171A|ASNS_uc003uov.3_Silent_p.A171A|ASNS_uc011kio.1_Silent_p.A150A|ASNS_uc003uow.3_Silent_p.A150A|ASNS_uc003uox.3_Silent_p.A88A	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	171	Glutamine amidotransferase type-2.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	AAAAGGGAGTCGCGGAGTGCT	0.368													20	48					0	0	1	0	0	
ASNS	440	broad.mit.edu	37	7	97493736	97493736	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:97493736C>T	uc003uot.3	-	4	828	c.322G>A	c.(322-324)GGA>AGA	p.G108R	ASNS_uc011kin.1_Missense_Mutation_p.G25R|ASNS_uc003uou.3_Missense_Mutation_p.G108R|ASNS_uc003uov.3_Missense_Mutation_p.G108R|ASNS_uc011kio.1_Missense_Mutation_p.G87R|ASNS_uc003uow.3_Missense_Mutation_p.G87R|ASNS_uc003uox.3_Missense_Mutation_p.G25R	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	108	Glutamine amidotransferase type-2.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TCAATTCCTCCTTTGTCATAA	0.373													15	36					0	0	1	0	0	
TRRAP	8295	broad.mit.edu	37	7	98508728	98508728	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:98508728A>G	uc003upp.2	+	17	2050	c.1841A>G	c.(1840-1842)TAC>TGC	p.Y614C	TRRAP_uc011kis.1_Missense_Mutation_p.Y614C|TRRAP_uc003upr.2_Missense_Mutation_p.Y306C	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	614					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGACAGACATACATCCGTGTG	0.458													22	31					0	0	1	0	0	
TRRAP	8295	broad.mit.edu	37	7	98591318	98591318	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:98591318C>T	uc003upp.2	+	65	10172	c.9963C>T	c.(9961-9963)ATC>ATT	p.I3321I	TRRAP_uc011kis.1_Silent_p.I3292I|TRRAP_uc003upr.2_Silent_p.I3027I	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3321					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TGGAAGGCATCGTCGATCAGA	0.547													31	44					0	0	1	0	0	
TRRAP	8295	broad.mit.edu	37	7	98601919	98601919	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:98601919C>T	uc003upp.2	+	67	10583	c.10374C>T	c.(10372-10374)TTC>TTT	p.F3458F	TRRAP_uc011kis.1_Silent_p.F3429F|TRRAP_uc003upr.2_Silent_p.F3164F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3458					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TCCCCAAATTCTTCCTCATAG	0.443													36	88					0	0	1	0	0	
TRRAP	8295	broad.mit.edu	37	7	98608819	98608819	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:98608819T>G	uc003upp.2	+	70	11250	c.11041T>G	c.(11041-11043)TTC>GTC	p.F3681V	TRRAP_uc011kis.1_Missense_Mutation_p.F3652V|TRRAP_uc003upr.2_Missense_Mutation_p.F3387V|TRRAP_uc003ups.2_5'Flank	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3681	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TCTGATAGGCTTCGCGGAATT	0.542													59	97					0	0	1	0	0	
SMURF1	57154	broad.mit.edu	37	7	98655153	98655153	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:98655153C>T	uc003upu.1	-	4	545	c.225G>A	c.(223-225)TCG>TCA	p.S75S	SMURF1_uc003upv.1_Silent_p.S75S|SMURF1_uc003upt.2_Silent_p.S75S	NM_020429	NP_065162	Q9HCE7	SMUF1_HUMAN	Smad ubiquitination regulatory factor 1 isoform	75	C2.				BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|lung(1)	4	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			TAATGGTTATCGAATCCGTTT	0.348													12	33					0	0	1	0	0	
PDAP1	11333	broad.mit.edu	37	7	98995514	98995514	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:98995514G>A	uc003uqe.2	-	5	579	c.458C>T	c.(457-459)GCT>GTT	p.A153V		NM_014891	NP_055706	Q13442	HAP28_HUMAN	PDGFA associated protein 1	153					cell proliferation|signal transduction						0	all_cancers(62;3.49e-09)|all_epithelial(64;2.57e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)		Becaplermin(DB00102)	CTTCCGGGCAGCCTCCTCCCG	0.602													39	64					0	0	1	0	0	
BUD31	8896	broad.mit.edu	37	7	99015106	99015106	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:99015106A>C	uc003uqf.2	+	5	473	c.272A>C	c.(271-273)AAA>ACA	p.K91T	BUD31_uc011kiu.1_Missense_Mutation_p.K91T|BUD31_uc011kiv.1_Missense_Mutation_p.K91T|BUD31_uc003uqg.3_Missense_Mutation_p.K91T	NM_003910	NP_003901	P41223	BUD31_HUMAN	G10 protein	91					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_cancers(62;1.76e-08)|all_epithelial(64;1.63e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			CTGATTGCAAAATGGAAAAAG	0.458													15	41					0	0	1	0	0	
ZNF655	79027	broad.mit.edu	37	7	99171030	99171030	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:99171030G>T	uc003urh.2	+	3	1692	c.1299G>T	c.(1297-1299)GAG>GAT	p.E433D	ZNF655_uc010lga.2_Missense_Mutation_p.E468D|ZNF655_uc010lgc.2_Missense_Mutation_p.E468D|ZNF655_uc003urj.2_Missense_Mutation_p.E433D|ZNF655_uc003urk.2_Missense_Mutation_p.E270D|ZNF655_uc010lgd.2_Missense_Mutation_p.E270D	NM_138494	NP_612503	Q8N720	ZN655_HUMAN	zinc finger protein 655 isoform a	433					G1 phase|regulation of mitotic cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_epithelial(64;3.19e-09)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					ATAGGAAAGAGAAATCGTATG	0.398													11	171					3.07112e-06	3.18826e-06	1	1	0	
ZNF655	79027	broad.mit.edu	37	7	99171035	99171035	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:99171035C>T	uc003urh.2	+	3	1697	c.1304C>T	c.(1303-1305)TCG>TTG	p.S435L	ZNF655_uc010lga.2_Missense_Mutation_p.S470L|ZNF655_uc010lgc.2_Missense_Mutation_p.S470L|ZNF655_uc003urj.2_Missense_Mutation_p.S435L|ZNF655_uc003urk.2_Missense_Mutation_p.S272L|ZNF655_uc010lgd.2_Missense_Mutation_p.S272L	NM_138494	NP_612503	Q8N720	ZN655_HUMAN	zinc finger protein 655 isoform a	435					G1 phase|regulation of mitotic cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding|zinc ion binding			ovary(1)	1	all_epithelial(64;3.19e-09)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					AAAGAGAAATCGTATGAATGT	0.398													52	131					0	0	1	0	0	
CYP3A7	1551	broad.mit.edu	37	7	99311124	99311124	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:99311124G>A	uc003uru.2	-	9	938	c.833C>T	c.(832-834)TCT>TTT	p.S278F	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	278					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					TGAATTCTGAGAGTCAATCAT	0.418													24	70					0	0	1	0	0	
GAL3ST4	79690	broad.mit.edu	37	7	99757915	99757915	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:99757915T>C	uc003utt.2	-	3	2114	c.1097A>G	c.(1096-1098)GAC>GGC	p.D366G	C7orf43_uc011kjj.1_5'Flank|C7orf43_uc003utr.2_5'Flank|C7orf43_uc003uts.2_5'Flank|GAL3ST4_uc003utu.2_Missense_Mutation_p.D366G|GAL3ST4_uc010lgq.2_Missense_Mutation_p.D304G	NM_024637	NP_078913	Q96RP7	G3ST4_HUMAN	galactose-3-O-sulfotransferase 4	366	Lumenal (Potential).				cell-cell signaling|oligosaccharide metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane|membrane fraction	3'-phosphoadenosine 5'-phosphosulfate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(3)	3	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GAGAGCCCAGTCCAGGTTGTT	0.637													48	74					0	0	1	0	0	
GPC2	221914	broad.mit.edu	37	7	99768093	99768093	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:99768093G>A	uc003utv.2	-	10	1668	c.1500C>T	c.(1498-1500)AGC>AGT	p.S500S	GAL3ST4_uc003utt.2_5'Flank|GAL3ST4_uc003utu.2_5'Flank|GAL3ST4_uc010lgq.2_5'Flank|GPC2_uc010lgr.2_RNA	NM_152742	NP_689955	Q8N158	GPC2_HUMAN	glypican 2 precursor	500						anchored to membrane|endoplasmic reticulum|extracellular space|plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)|pancreas(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTCCAGAGCCGCTGGCATCCT	0.388													8	18					0	0	1	0	0	
PCOLCE	5118	broad.mit.edu	37	7	100201741	100201741	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100201741G>A	uc003uvo.2	+	3	562	c.364G>A	c.(364-366)GCC>ACC	p.A122T	uc011kjy.1_5'Flank|PCOLCE_uc011kkb.1_Missense_Mutation_p.A122T|PCOLCE_uc010lhb.1_Intron|PCOLCE_uc003uvp.1_5'Flank	NM_002593	NP_002584	Q15113	PCOC1_HUMAN	procollagen C-endopeptidase enhancer	122	CUB 1.				multicellular organismal development	extracellular space	collagen binding|heparin binding|peptidase activator activity				0	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GCCCCTAGTCGCCCCCGGCAA	0.687													34	64					0	0	1	0	0	
PCOLCE	5118	broad.mit.edu	37	7	100203324	100203324	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100203324T>C	uc003uvo.2	+	5	812	c.614T>C	c.(613-615)TTT>TCT	p.F205S	uc011kjy.1_5'Flank|PCOLCE_uc010lhb.1_RNA|PCOLCE_uc003uvp.1_5'Flank	NM_002593	NP_002584	Q15113	PCOC1_HUMAN	procollagen C-endopeptidase enhancer	205	CUB 2.				multicellular organismal development	extracellular space	collagen binding|heparin binding|peptidase activator activity				0	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					TTCGAGAAGTTTGACCTGGAG	0.682													3	4					0	0	1	0	0	
ZAN	7455	broad.mit.edu	37	7	100358106	100358106	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100358106C>T	uc003uwj.2	+	19	3954	c.3789C>T	c.(3787-3789)TTC>TTT	p.F1263F	ZAN_uc003uwk.2_Silent_p.F1263F|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_5'Flank	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1263	VWFD 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AGACGGAGTTCGGTTTGCGGG	0.587													25	44					0	0	1	0	0	
ZAN	7455	broad.mit.edu	37	7	100385564	100385564	+	Missense_Mutation	SNP	T	G	G	rs112538235		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100385564T>G	uc003uwj.2	+	39	7198	c.7033T>G	c.(7033-7035)TTC>GTC	p.F2345V	ZAN_uc003uwk.2_Missense_Mutation_p.F2345V|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.F395V	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2345	VWFD 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ATTTGACGGCTTCAGCTACCG	0.498													20	34					0	0	1	0	0	
ZAN	7455	broad.mit.edu	37	7	100388619	100388619	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100388619C>T	uc003uwj.2	+	41	7578	c.7413C>T	c.(7411-7413)TAC>TAT	p.Y2471Y	ZAN_uc003uwk.2_Silent_p.Y2471Y|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Intron	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2471	VWFD 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GCGGAAACTACGACAAGAACC	0.577													7	16					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	7	100552191	100552191	+	RNA	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100552191T>G	uc003uxk.1	+	1		c.1442T>G			uc003uxl.1_Missense_Mutation_p.I214M					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TTTCTTATATTTCCCTTCCCT	0.488													73	429					0	0	1	0	0	
MUC17	140453	broad.mit.edu	37	7	100682994	100682994	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100682994C>A	uc003uxp.1	+	3	8350	c.8297C>A	c.(8296-8298)TCT>TAT	p.S2766Y	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2766	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|44.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTGGCCAGTTCTGAGGCTAGC	0.493													123	319					3.58676e-45	4.45666e-45	1	1	0	
MUC17	140453	broad.mit.edu	37	7	100686614	100686614	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100686614A>G	uc003uxp.1	+	3	11970	c.11917A>G	c.(11917-11919)ACA>GCA	p.T3973A	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3973	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TGAACTAAACACACCATCAAC	0.448													13	144					0	0	1	0	0	
RABL5	64792	broad.mit.edu	37	7	100958425	100958425	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100958425A>C	uc003uyl.2	-	5	651	c.548T>G	c.(547-549)ATT>AGT	p.I183S	RABL5_uc011kkk.1_Missense_Mutation_p.I106S|RABL5_uc011kkl.1_Missense_Mutation_p.I106S|RABL5_uc003uym.2_Missense_Mutation_p.I153S|RABL5_uc010lhw.2_RNA	NM_022777	NP_073614	Q9H7X7	RABL5_HUMAN	RAB, member RAS oncogene family-like 5 isoform	183							GTP binding				0	Lung NSC(181;0.215)					CTAGGTCATAATTGACATCTC	0.463											OREG0018221	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	53					0	0	1	0	0	
RABL5	64792	broad.mit.edu	37	7	100962276	100962276	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:100962276G>T	uc003uyl.2	-	2	180	c.77C>A	c.(76-78)TCT>TAT	p.S26Y	RABL5_uc011kkk.1_5'UTR|RABL5_uc011kkl.1_Intron|RABL5_uc003uym.2_Missense_Mutation_p.S26Y|RABL5_uc010lhw.2_RNA|RABL5_uc011kkm.1_Missense_Mutation_p.S26Y	NM_022777	NP_073614	Q9H7X7	RABL5_HUMAN	RAB, member RAS oncogene family-like 5 isoform	26							GTP binding				0	Lung NSC(181;0.215)					GATGTCAGAAGATTCTGTCAG	0.378													30	61					6.04164e-23	7.22422e-23	1	1	0	
CUX1	1523	broad.mit.edu	37	7	101925144	101925144	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:101925144C>A	uc003uyt.2	+	21	1853	c.1834C>A	c.(1834-1836)CTC>ATC	p.L612I	CUX1_uc011kkn.1_Missense_Mutation_p.L573I|CUX1_uc003uyw.2_Missense_Mutation_p.L566I|CUX1_uc003uyv.2_Missense_Mutation_p.L596I|CUX1_uc003uyu.2_Missense_Mutation_p.L610I|CUX1_uc003uyz.2_RNA	NM_001913	NP_001904	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform b	Error:Variant_position_missing_in_P39880_after_alignment					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GCGTCTGGTTCTCTCCAACAA	0.652													16	33					2.35188e-11	2.57851e-11	1	1	0	
FBXL13	222235	broad.mit.edu	37	7	102517974	102517974	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:102517974A>G	uc003vaq.2	-	16	2002	c.1575T>C	c.(1573-1575)TAT>TAC	p.Y525Y	FBXL13_uc010liq.1_Intron|FBXL13_uc010lir.1_Silent_p.Y525Y|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Silent_p.Y525Y	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	525	LRR 12.										0						TGTTTACAATATATCCAATTC	0.313													25	49					0	0	1	0	0	
DPY19L2P2	349152	broad.mit.edu	37	7	102856922	102856922	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:102856922G>A	uc003vbh.3	-	16	2968	c.777C>T	c.(775-777)GGC>GGT	p.G259G	DPY19L2P2_uc003vbg.3_RNA|DPY19L2P2_uc010lit.2_RNA	NR_003561				RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						GGTCTGAAACGCCTAAGATTT	0.209													32	62					0	0	1	0	0	
DNAJC2	27000	broad.mit.edu	37	7	102953458	102953458	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:102953458C>A	uc003vbo.2	-	16	1978	c.1727G>T	c.(1726-1728)AGA>ATA	p.R576I	PMPCB_uc003vbl.2_3'UTR|PMPCB_uc003vbm.2_3'UTR|PMPCB_uc010liv.2_3'UTR|PMPCB_uc010liw.2_3'UTR|PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_Missense_Mutation_p.R201I|DNAJC2_uc010lix.2_Missense_Mutation_p.R523I|DNAJC2_uc003vbp.2_Missense_Mutation_p.R201I	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	576	SANT 2.				'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TTTTTCCCATCTTTCAGGTGT	0.403													50	118					4.86159e-25	5.85421e-25	1	1	0	
DNAJC2	27000	broad.mit.edu	37	7	102967025	102967025	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:102967025G>A	uc003vbo.2	-	5	788	c.537C>T	c.(535-537)TTC>TTT	p.F179F	PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_5'UTR|DNAJC2_uc010lix.2_Silent_p.F179F|DNAJC2_uc003vbp.2_5'UTR|DNAJC2_uc003vbq.1_RNA	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	179	ZRF1-UBD.				'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TAAACACTTCGAAGAAATTAT	0.378													20	46					0	0	1	0	0	
DNAJC2	27000	broad.mit.edu	37	7	102967059	102967059	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:102967059A>G	uc003vbo.2	-	5	754	c.503T>C	c.(502-504)GTT>GCT	p.V168A	PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_5'UTR|DNAJC2_uc010lix.2_Missense_Mutation_p.V168A|DNAJC2_uc003vbp.2_5'UTR|DNAJC2_uc003vbq.1_RNA	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	168	ZRF1-UBD.				'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TTTAGAAGGAACTGAGTTATC	0.353													23	38					0	0	1	0	0	
DNAJC2	27000	broad.mit.edu	37	7	102982306	102982306	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:102982306C>T	uc003vbo.2	-	2	411	c.160G>A	c.(160-162)GAG>AAG	p.E54K	DNAJC2_uc003vbn.2_5'UTR|DNAJC2_uc010lix.2_Missense_Mutation_p.E54K|DNAJC2_uc003vbp.2_5'UTR|DNAJC2_uc003vbq.1_RNA|DNAJC2_uc003vbr.1_Missense_Mutation_p.E54K	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	54					'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TTCTTATCCTCCAGTTCCTGA	0.423													37	79					0	0	1	0	0	
SLC26A5	375611	broad.mit.edu	37	7	103061263	103061263	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:103061263G>T	uc003vbz.2	-	4	450	c.214C>A	c.(214-216)CCA>ACA	p.P72T	SLC26A5_uc003vbt.1_Missense_Mutation_p.P72T|SLC26A5_uc003vbu.1_Missense_Mutation_p.P72T|SLC26A5_uc003vbv.1_Missense_Mutation_p.P72T|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.P72T|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	72	Cytoplasmic (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						TTGTATGCTGGCAGCCATTTA	0.373													36	70					1.06647e-15	1.21866e-15	1	1	0	
RELN	5649	broad.mit.edu	37	7	103155842	103155842	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:103155842G>A	uc003vca.2	-	50	8069	c.7909C>T	c.(7909-7911)CGC>TGC	p.R2637C	RELN_uc010liz.2_Missense_Mutation_p.R2637C	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2637					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CAGCGGAAGCGAGTGGCAATC	0.498													20	38					0	0	1	0	0	
RELN	5649	broad.mit.edu	37	7	103179740	103179740	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:103179740A>C	uc003vca.2	-	45	7125	c.6965T>G	c.(6964-6966)GTC>GGC	p.V2322G	RELN_uc010liz.2_Missense_Mutation_p.V2322G	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2322					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ATCTTCCAAGACCGTATTACC	0.403													28	38					0	0	1	0	0	
RELN	5649	broad.mit.edu	37	7	103205762	103205762	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:103205762A>C	uc003vca.2	-	34	5333	c.5173T>G	c.(5173-5175)TGG>GGG	p.W1725G	RELN_uc010liz.2_Missense_Mutation_p.W1725G	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1725					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ATCCGCTTCCAATTCTGGAAT	0.443													27	64					0	0	1	0	0	
RELN	5649	broad.mit.edu	37	7	103276722	103276722	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:103276722G>A	uc003vca.2	-	18	2423	c.2263C>T	c.(2263-2265)CGT>TGT	p.R755C	RELN_uc010liz.2_Missense_Mutation_p.R755C	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	755					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ATTAGCTGACGCCGCCCATCT	0.433													7	46					0	0	1	0	0	
MLL5	55904	broad.mit.edu	37	7	104731694	104731694	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:104731694A>C	uc003vcm.2	+	15	2189	c.1655A>C	c.(1654-1656)AAA>ACA	p.K552T	MLL5_uc003vcl.2_Missense_Mutation_p.K552T|MLL5_uc010ljc.2_Missense_Mutation_p.K552T	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	552					cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						ATAGAAGAAAAAACTCCTATT	0.333													13	33					0	0	1	0	0	
MLL5	55904	broad.mit.edu	37	7	104746336	104746336	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:104746336A>C	uc003vcm.2	+	19	3016	c.2482A>C	c.(2482-2484)AAT>CAT	p.N828H	MLL5_uc010ljc.2_Missense_Mutation_p.N828H|MLL5_uc010lje.1_RNA|MLL5_uc010ljf.1_5'Flank|MLL5_uc010ljg.2_5'Flank	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	828					cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						GGAAGAAGAAAATTCAGCAAT	0.343													21	48					0	0	1	0	0	
MLL5	55904	broad.mit.edu	37	7	104750736	104750736	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:104750736A>G	uc003vcm.2	+	24	4299	c.3765A>G	c.(3763-3765)TCA>TCG	p.S1255S	MLL5_uc010ljc.2_Silent_p.S1255S|MLL5_uc010lje.1_RNA|MLL5_uc010ljf.1_RNA|MLL5_uc010ljg.2_Intron|uc003vcp.1_5'Flank|MLL5_uc010ljh.1_Missense_Mutation_p.Q61R	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	1255					cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						GGACTGCCTCAACTTCAGTGG	0.383													34	73					0	0	1	0	0	
PUS7	54517	broad.mit.edu	37	7	105111185	105111185	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:105111185G>A	uc003vcx.2	-	11	1567	c.1348C>T	c.(1348-1350)CGA>TGA	p.R450*	PUS7_uc010lji.2_Nonsense_Mutation_p.R456*|PUS7_uc003vcy.2_Nonsense_Mutation_p.R450*|PUS7_uc003vcz.1_Nonsense_Mutation_p.R450*	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	450	TRUD.				pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						GAAAGTCCTCGAAGCAGCTGC	0.438													43	100					0	0	1	0	0	
RINT1	60561	broad.mit.edu	37	7	105187508	105187508	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:105187508A>C	uc003vda.1	+	5	898	c.667A>C	c.(667-669)ATT>CTT	p.I223L	RINT1_uc010ljj.1_Intron	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	223	RINT1/TIP20.				cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						CTGGCATAAAATTCTCAAGGA	0.378													37	71					0	0	1	0	0	
CDHR3	222256	broad.mit.edu	37	7	105662793	105662793	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:105662793T>G	uc003vdl.3	+	14	2083	c.1975T>G	c.(1975-1977)TCT>GCT	p.S659A	CDHR3_uc003vdk.2_Intron|CDHR3_uc003vdm.3_Missense_Mutation_p.S646A|CDHR3_uc011klt.1_Missense_Mutation_p.S571A|CDHR3_uc003vdn.2_Intron	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	659	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CAACTTGATGTCTGACAGGAA	0.483													66	104					0	0	1	0	0	
NAMPT	10135	broad.mit.edu	37	7	105902057	105902057	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:105902057C>T	uc003vdq.2	-	8	1374	c.1066G>A	c.(1066-1068)GTA>ATA	p.V356I	NAMPT_uc003vdr.1_Missense_Mutation_p.V356I	NM_005746	NP_005737	P43490	NAMPT_HUMAN	nicotinamide phosphoribosyltransferase	356					cell-cell signaling|NAD biosynthetic process|nicotinamide metabolic process|positive regulation of cell proliferation|positive regulation of nitric-oxide synthase biosynthetic process|signal transduction|water-soluble vitamin metabolic process	cytosol	cytokine activity|nicotinamide phosphoribosyltransferase activity|nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			large_intestine(1)	1						TTAATATCTACTCCATCCCCT	0.308													49	90					0	0	1	0	0	
PIK3CG	5294	broad.mit.edu	37	7	106520000	106520000	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:106520000C>A	uc003vdv.3	+	6	2513	c.2428C>A	c.(2428-2430)CCA>ACA	p.P810T	PIK3CG_uc003vdu.2_Missense_Mutation_p.P810T|PIK3CG_uc003vdw.2_Missense_Mutation_p.P810T	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	810					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						CAAGAAAAAACCACTATGGCT	0.388													28	57					7.26314e-15	8.22614e-15	1	1	0	
COG5	10466	broad.mit.edu	37	7	106938717	106938717	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:106938717G>A	uc003ved.2	-	12	1801	c.1276C>T	c.(1276-1278)CGT>TGT	p.R426C	COG5_uc003vec.2_Missense_Mutation_p.R426C|COG5_uc003vee.2_Missense_Mutation_p.R426C	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	426					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						TGTTGAAGACGCTTCCATAAG	0.378													33	60					0	0	1	0	0	
COG5	10466	broad.mit.edu	37	7	107002853	107002853	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:107002853C>T	uc003ved.2	-	9	1466	c.941G>A	c.(940-942)CGA>CAA	p.R314Q	COG5_uc003vec.2_Missense_Mutation_p.R314Q|COG5_uc003vee.2_Missense_Mutation_p.R314Q	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	314					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						CATGGTAGATCGTCCAGGTCC	0.378													18	20					0	0	1	0	0	
SLC26A4	5172	broad.mit.edu	37	7	107314667	107314667	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:107314667C>T	uc003vep.2	+	5	698	c.474C>T	c.(472-474)GAC>GAT	p.D158D		NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	158	Extracellular (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						TGGCCCCCGACGAACACTTTC	0.433									Pendred_syndrome				43	91					0	0	1	0	0	
SLC26A3	1811	broad.mit.edu	37	7	107408302	107408302	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:107408302T>G	uc003ver.2	-	19	2325	c.2114A>C	c.(2113-2115)AAA>ACA	p.K705T	SLC26A3_uc003ves.2_Missense_Mutation_p.K592T	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	705	Helical; (Potential).|STAS.				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TATTGAGCTTTTCACTTCACC	0.323													16	43					0	0	1	0	0	
ZNF277	11179	broad.mit.edu	37	7	111958290	111958290	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:111958290C>T	uc003vge.2	+	5	648	c.519C>T	c.(517-519)GGC>GGT	p.G173G	ZNF277_uc003vgd.2_Silent_p.G173G|ZNF277_uc003vgf.2_Silent_p.G95G|ZNF277_uc003vgg.2_5'UTR	NM_021994	NP_068834	Q9NRM2	ZN277_HUMAN	zinc finger protein (C2H2 type) 277	173						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(2)	4						ATTTTCATGGCGTTTGTATGT	0.343													21	38					0	0	1	0	0	
PPP1R3A	5506	broad.mit.edu	37	7	113518902	113518902	+	Nonsense_Mutation	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:113518902T>A	uc010ljy.1	-	4	2276	c.2245A>T	c.(2245-2247)AAA>TAA	p.K749*		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	749					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						ATTATTGCTTTTTCTCTAGCA	0.423													53	90					0	0	1	0	0	
FOXP2	93986	broad.mit.edu	37	7	114271749	114271749	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:114271749C>T	uc003vhb.2	+	6	1138	c.764C>T	c.(763-765)TCG>TTG	p.S255L	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Missense_Mutation_p.S280L|FOXP2_uc003vha.2_Missense_Mutation_p.S163L|FOXP2_uc011kmu.1_Missense_Mutation_p.S272L|FOXP2_uc011kmv.1_Missense_Mutation_p.S254L|FOXP2_uc010ljz.1_Missense_Mutation_p.S163L|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_Missense_Mutation_p.S255L|FOXP2_uc003vgx.2_Missense_Mutation_p.S255L|FOXP2_uc003vhd.2_Missense_Mutation_p.S255L|FOXP2_uc003vhc.2_Missense_Mutation_p.S280L	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	255	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						CCTGTCCAATCGCTGCCTCAA	0.473													22	28					0	0	1	0	0	
FOXP2	93986	broad.mit.edu	37	7	114298150	114298150	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:114298150G>A	uc003vhb.2	+	11	1670	c.1296G>A	c.(1294-1296)TCG>TCA	p.S432S	FOXP2_uc003vgu.2_Intron|FOXP2_uc003vgz.2_Silent_p.S457S|FOXP2_uc003vha.2_Silent_p.S340S|FOXP2_uc011kmu.1_Silent_p.S449S|FOXP2_uc011kmv.1_Silent_p.S431S|FOXP2_uc010ljz.1_Intron|FOXP2_uc003vhe.1_Silent_p.S2S	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	432					camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						TCACCATGTCGAAGAATATGT	0.488													45	68					0	0	1	0	0	
TFEC	22797	broad.mit.edu	37	7	115590937	115590937	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:115590937G>A	uc003vhj.1	-	6	690	c.506C>T	c.(505-507)TCT>TTT	p.S169F	TFEC_uc003vhk.1_Missense_Mutation_p.S140F|TFEC_uc003vhl.3_Missense_Mutation_p.S140F|TFEC_uc011kmw.1_Missense_Mutation_p.S259F	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	169	Helix-loop-helix motif.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			CGGATCATTAGACTTTGGAAT	0.323													17	45					0	0	1	0	0	
TFEC	22797	broad.mit.edu	37	7	115590981	115590981	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:115590981A>G	uc003vhj.1	-	6	646	c.462T>C	c.(460-462)AAT>AAC	p.N154N	TFEC_uc003vhk.1_Silent_p.N125N|TFEC_uc003vhl.3_Silent_p.N125N|TFEC_uc011kmw.1_Silent_p.N244N	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	154	Helix-loop-helix motif.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			GGTAATTAATATTATACCTTC	0.289													20	38					0	0	1	0	0	
ST7	7982	broad.mit.edu	37	7	116769862	116769862	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:116769862G>A	uc003vin.2	+	4	624	c.410G>A	c.(409-411)CGA>CAA	p.R137Q	ST7_uc011knl.1_Missense_Mutation_p.R137Q|ST7_uc003vio.2_Missense_Mutation_p.R137Q|ST7_uc003viq.2_Missense_Mutation_p.R91Q|ST7_uc011knm.1_Missense_Mutation_p.R94Q|ST7_uc003vir.2_Missense_Mutation_p.R85Q|ST7OT2_uc003viu.2_Intron|ST7_uc011knn.1_Missense_Mutation_p.R85Q|ST7OT2_uc003viw.2_Intron|ST7_uc003vix.1_5'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	137						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		AAAGTATGGCGAAATCCACTA	0.403													26	63					0	0	1	0	0	
ST7	7982	broad.mit.edu	37	7	116770546	116770546	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:116770546T>C	uc003vin.2	+	5	665	c.451T>C	c.(451-453)TAT>CAT	p.Y151H	ST7_uc011knl.1_Missense_Mutation_p.Y151H|ST7_uc003vio.2_Missense_Mutation_p.Y151H|ST7_uc003viq.2_Missense_Mutation_p.Y105H|ST7_uc011knm.1_Missense_Mutation_p.Y108H|ST7_uc003vir.2_Missense_Mutation_p.Y99H|ST7OT2_uc003viu.2_Intron|ST7_uc011knn.1_Missense_Mutation_p.Y99H|ST7OT2_uc003viw.2_Intron|ST7_uc003vix.1_5'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	151						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CCTTTGCAGGTATACTTGGGT	0.413													42	65					0	0	1	0	0	
ST7	7982	broad.mit.edu	37	7	116849924	116849924	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:116849924C>A	uc003vin.2	+	13	1552	c.1338C>A	c.(1336-1338)TTC>TTA	p.F446L	ST7_uc011knl.1_Missense_Mutation_p.F423L|ST7_uc003vio.2_Missense_Mutation_p.F423L|ST7_uc003viq.2_Missense_Mutation_p.F400L|ST7_uc011knm.1_Missense_Mutation_p.F403L|ST7_uc003vir.2_Missense_Mutation_p.F371L|ST7_uc011knn.1_Missense_Mutation_p.F394L|ST7OT3_uc003viy.1_RNA	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	446						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CATATGCATTCTTTCATCTTG	0.373													21	46					6.44725e-10	6.96688e-10	1	1	0	
WNT2	7472	broad.mit.edu	37	7	116960623	116960623	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:116960623C>T	uc003viz.2	-	2	608	c.308G>A	c.(307-309)CGA>CAA	p.R103Q	WNT2_uc003vja.2_Silent_p.P28P	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	103					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		AGACTTACTTCGGAGTAGGAC	0.532													11	22					0	0	1	0	0	
ASZ1	136991	broad.mit.edu	37	7	117066950	117066950	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:117066950T>G	uc003vjb.2	-	2	208	c.145A>C	c.(145-147)AAA>CAA	p.K49Q	ASZ1_uc011kno.1_Missense_Mutation_p.K49Q|ASZ1_uc011knp.1_5'UTR	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	49	ANK 1.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			TTCTTAAATTTTTCTTTCTTT	0.338													47	121					0	0	1	0	0	
CFTR	1080	broad.mit.edu	37	7	117246794	117246794	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:117246794T>C	uc003vjd.2	+	18	3107	c.2975T>C	c.(2974-2976)TTT>TCT	p.F992S	CFTR_uc011knq.1_Missense_Mutation_p.F398S	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	992	Helical; Name=9; (Potential).|ABC transmembrane type-1 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	CTTACCATATTTGACTTCATC	0.279									Cystic_Fibrosis				76	109					0	0	1	0	0	
CTTNBP2	83992	broad.mit.edu	37	7	117431919	117431919	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:117431919C>T	uc003vjf.2	-	4	1423	c.1331G>A	c.(1330-1332)CGA>CAA	p.R444Q		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	444	Pro-rich.									ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		TGCTTGGATTCGTGGGTTTAG	0.478													91	185					0	0	1	0	0	
KCND2	3751	broad.mit.edu	37	7	119915724	119915724	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:119915724G>T	uc003vjj.1	+	1	2003	c.1038G>T	c.(1036-1038)GAG>GAT	p.E346D		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	346					regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TCTACGCAGAGAAGGGGTCTT	0.498													45	71					4.01765e-15	4.56549e-15	1	1	0	
ING3	54556	broad.mit.edu	37	7	120593395	120593395	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:120593395C>A	uc003vjn.2	+	3	272	c.138C>A	c.(136-138)TTC>TTA	p.F46L	ING3_uc011knr.1_Missense_Mutation_p.F46L|ING3_uc003vjl.2_Missense_Mutation_p.F46L|ING3_uc003vjm.1_Missense_Mutation_p.F46L|ING3_uc003vjo.2_5'UTR|ING3_uc003vjp.2_Missense_Mutation_p.F46L|ING3_uc011kns.1_Missense_Mutation_p.F31L	NM_019071	NP_061944	Q9NXR8	ING3_HUMAN	inhibitor of growth family, member 3 isoform 1	46					histone H2A acetylation|histone H4 acetylation|positive regulation of apoptosis|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Piccolo NuA4 histone acetyltransferase complex	zinc ion binding			ovary(1)	1	all_neural(327;0.117)					TCAGTGAATTCTTTATGAATG	0.289													45	69					2.24722e-20	2.65301e-20	1	1	0	
C7orf58	79974	broad.mit.edu	37	7	120704358	120704358	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:120704358A>C	uc003vjq.3	+	5	1054	c.607A>C	c.(607-609)AGA>CGA	p.R203R	C7orf58_uc003vjr.1_Silent_p.R203R|C7orf58_uc003vjs.3_Silent_p.R203R|C7orf58_uc003vjt.3_5'UTR	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	203						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AATAGTTAGAAGATTCCCAGG	0.418													17	37					0	0	1	0	0	
C7orf58	79974	broad.mit.edu	37	7	120739989	120739989	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:120739989G>A	uc003vjq.3	+	7	1206	c.759G>A	c.(757-759)ACG>ACA	p.T253T	C7orf58_uc003vjr.1_Silent_p.T253T|C7orf58_uc003vjs.3_Silent_p.T253T|C7orf58_uc003vjt.3_Silent_p.T33T|C7orf58_uc010lkk.1_Silent_p.T33T	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	253						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GGAATGAAACGACAGTCCTTG	0.378													18	45					0	0	1	0	0	
C7orf58	79974	broad.mit.edu	37	7	120935617	120935617	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:120935617C>T	uc003vjq.3	+	23	3439	c.2992C>T	c.(2992-2994)CGA>TGA	p.R998*		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	998						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AACAAATTTTCGATCGCCATA	0.358													41	77					0	0	1	0	0	
WNT16	51384	broad.mit.edu	37	7	120978940	120978940	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:120978940C>T	uc003vjw.2	+	4	896	c.639C>T	c.(637-639)GTC>GTT	p.V213V	WNT16_uc003vjv.2_Silent_p.V203V|WNT16_uc010lkl.2_5'UTR	NM_057168	NP_476509	Q9UBV4	WNT16_HUMAN	wingless-type MMTV integration site family,	213					anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|keratinocyte differentiation|keratinocyte proliferation|negative regulation of cell death|optic cup formation involved in camera-type eye development|oxidative stress-induced premature senescence|positive regulation of gene expression|positive regulation of JNK cascade|positive regulation of phosphatidylinositol 3-kinase cascade|replicative senescence|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			lung(2)|ovary(2)|large_intestine(1)	5	all_neural(327;0.117)					TTCAGGCTGTCGCCAAGTTGA	0.388													17	24					0	0	1	0	0	
PTPRZ1	5803	broad.mit.edu	37	7	121608065	121608065	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:121608065C>A	uc003vjy.2	+	3	580	c.185C>A	c.(184-186)TCT>TAT	p.S62Y	PTPRZ1_uc003vjz.2_Missense_Mutation_p.S62Y	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	62	Extracellular (Potential).|Alpha-carbonic anhydrase.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CCAAAACAATCTCCTATCAAT	0.303													22	71					8.04996e-18	9.36589e-18	1	1	0	
PTPRZ1	5803	broad.mit.edu	37	7	121651597	121651597	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:121651597C>T	uc003vjy.2	+	12	2892	c.2497C>T	c.(2497-2499)CGC>TGC	p.R833C	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	833	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TGAATTGTTTCGCCATCTGCA	0.468													55	126					0	0	1	0	0	
PTPRZ1	5803	broad.mit.edu	37	7	121653537	121653537	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:121653537G>T	uc003vjy.2	+	12	4832	c.4437G>T	c.(4435-4437)GAG>GAT	p.E1479D	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1479	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CACTATCTGAGAATTCTGAAG	0.398													26	59					6.32553e-13	7.03772e-13	1	1	0	
TAS2R16	50833	broad.mit.edu	37	7	122635462	122635462	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:122635462T>C	uc003vkl.1	-	1	293	c.227A>G	c.(226-228)TAT>TGT	p.Y76C		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	76	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						GCAAAGTACATAATTCAAATT	0.393													32	54					0	0	1	0	0	
IQUB	154865	broad.mit.edu	37	7	123109296	123109296	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:123109296A>G	uc003vkn.2	-	9	2130	c.1553T>C	c.(1552-1554)GTG>GCG	p.V518A	IQUB_uc003vko.2_Missense_Mutation_p.V518A|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Missense_Mutation_p.V518A	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	518										ovary(3)|large_intestine(1)	4						AGTTAACAGCACATCCAGCCT	0.358													25	77					0	0	1	0	0	
IQUB	154865	broad.mit.edu	37	7	123109360	123109360	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:123109360C>A	uc003vkn.2	-	9	2066	c.1489G>T	c.(1489-1491)GAG>TAG	p.E497*	IQUB_uc003vko.2_Nonsense_Mutation_p.E497*|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Nonsense_Mutation_p.E497*	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	497										ovary(3)|large_intestine(1)	4						TTTTGCAGCTCTCTGGCTCTG	0.358													39	65					1.32136e-16	1.52201e-16	1	1	0	
ASB15	142685	broad.mit.edu	37	7	123276892	123276892	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:123276892C>T	uc003vku.1	+	12	1916	c.1624C>T	c.(1624-1626)CGG>TGG	p.R542W	ASB15_uc003vkw.1_Missense_Mutation_p.R542W	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	542	SOCS box.				intracellular signal transduction					skin(2)|lung(1)	3						GCATTTGTGTCGGTTAAAAAT	0.378													37	63					0	0	1	0	0	
HYAL4	23553	broad.mit.edu	37	7	123509153	123509153	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:123509153C>T	uc003vlc.2	+	3	1464	c.826C>T	c.(826-828)CGC>TGC	p.R276C	HYAL4_uc011knz.1_Missense_Mutation_p.R276C	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	276	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						AAACATTTTGCGCTTCTCCAA	0.458													24	61					0	0	1	0	0	
SPAM1	6677	broad.mit.edu	37	7	123599570	123599570	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:123599570G>T	uc003vld.2	+	6	1479	c.1077G>T	c.(1075-1077)GAG>GAT	p.E359D	SPAM1_uc003vle.2_Missense_Mutation_p.E359D|SPAM1_uc011koa.1_Missense_Mutation_p.E15D|SPAM1_uc003vlf.3_Missense_Mutation_p.E359D|SPAM1_uc010lku.2_Missense_Mutation_p.E359D	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	359					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	ATTACATGGAGACTATACTGA	0.363													19	39					8.10497e-08	8.54627e-08	1	1	0	
POT1	25913	broad.mit.edu	37	7	124503537	124503537	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:124503537A>G	uc003vlm.2	-	8	1014	c.413T>C	c.(412-414)GTT>GCT	p.V138A	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.V7A|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	138					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						AGATGCCCAAACACGTAAGGC	0.433													45	86					0	0	1	0	0	
POT1	25913	broad.mit.edu	37	7	124537223	124537223	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:124537223G>T	uc003vlm.2	-	5	606	c.5C>A	c.(4-6)TCT>TAT	p.S2Y	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_5'UTR|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	2					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						TCTTACCAAAGACATTGATTC	0.299													15	44					0.000422831	0.000430665	1	1	0	
GCC1	79571	broad.mit.edu	37	7	127222278	127222278	+	Silent	SNP	G	A	A	rs141951933	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:127222278G>A	uc003vma.2	-	2	2536	c.2118C>T	c.(2116-2118)ATC>ATT	p.I706I		NM_024523	NP_078799	Q96CN9	GCC1_HUMAN	Golgi coiled-coil protein 1	706	Potential.					Golgi membrane|plasma membrane	protein binding			ovary(2)	2						TGTTCTTTTCGATGTGGCTCT	0.592													53	84					0	0	1	0	0	
FSCN3	29999	broad.mit.edu	37	7	127235919	127235919	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:127235919T>C	uc003vmd.1	+	2	922	c.703T>C	c.(703-705)TTA>CTA	p.L235L	FSCN3_uc003vmc.1_Silent_p.L190L|FSCN3_uc011kog.1_RNA|FSCN3_uc011koh.1_Silent_p.L101L|FSCN3_uc010llc.1_Silent_p.L235L	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	235						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						AGGAGGCATGTTATATCCACA	0.572													33	58					0	0	1	0	0	
SND1	27044	broad.mit.edu	37	7	127725811	127725811	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:127725811C>A	uc003vmi.2	+	20	2509	c.2283C>A	c.(2281-2283)GTC>GTA	p.V761V	SND1_uc010lle.2_Silent_p.V414V	NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	761	Tudor.				gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						AAATACATGTCTTCTACATTG	0.537													37	80					2.75727e-19	3.2379e-19	1	1	0	
IMPDH1	3614	broad.mit.edu	37	7	128034631	128034631	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:128034631C>T	uc011kol.1	-	12	1424	c.1318G>A	c.(1318-1320)GCG>ACG	p.A440T	IMPDH1_uc011kom.1_Missense_Mutation_p.A435T|IMPDH1_uc003vmt.2_Missense_Mutation_p.A415T|IMPDH1_uc003vmu.2_Missense_Mutation_p.A525T|IMPDH1_uc003vmw.2_Missense_Mutation_p.A515T|IMPDH1_uc011kon.1_Missense_Mutation_p.A492T|IMPDH1_uc003vmv.2_Missense_Mutation_p.A489T|IMPDH1_uc003vmx.2_Missense_Mutation_p.A448T|IMPDH1_uc003vmy.2_Missense_Mutation_p.A456T|uc011koo.1_5'Flank	NM_001142573	NP_001136045	P20839	IMDH1_HUMAN	inosine monophosphate dehydrogenase 1 isoform e	440					GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	DNA binding|IMP dehydrogenase activity|metal ion binding			skin(2)|lung(1)|central_nervous_system(1)	4					Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)|Ribavirin(DB00811)|Thioguanine(DB00352)	ACACCCTGCGCGATCTTCACT	0.587													26	38					0	0	1	0	0	
FAM71F1	84691	broad.mit.edu	37	7	128366916	128366916	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:128366916A>C	uc003vno.1	+	5	897	c.844A>C	c.(844-846)AAC>CAC	p.N282H	FAM71F1_uc003vnm.1_RNA|FAM71F1_uc003vnn.1_Missense_Mutation_p.N181H|FAM71F1_uc010llp.1_RNA|FAM71F1_uc003vnp.1_Missense_Mutation_p.N280H	NM_032599	NP_115988	Q96KD3	F71F1_HUMAN	testes development-related NYD-SP18	282										skin(1)	1						GACCAACAAGAACAGCTCAGG	0.448													20	55					0	0	1	0	0	
FLNC	2318	broad.mit.edu	37	7	128497188	128497188	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:128497188C>A	uc003vnz.3	+	46	7787	c.7578C>A	c.(7576-7578)TTC>TTA	p.F2526L	FLNC_uc003voa.3_Missense_Mutation_p.F2493L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2526	Interaction with INPPL1.|Filamin 23.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CATCAGAGTTCATCGTGAACA	0.632													71	144					2.97807e-44	3.69754e-44	1	1	0	
LOC407835	407835	broad.mit.edu	37	7	128767146	128767146	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:128767146G>A	uc003voo.2	+	1	822	c.575G>A	c.(574-576)CGA>CAA	p.R192Q		NR_002144				SubName: Full=cDNA FLJ35806 fis, clone TESTI2005987, highly similar to Dual specificity mitogen-activated protein kinase kinase 2 (EC 2.7.12.2); SubName: Full=Mitogen-activated protein kinase kinase 2, isoform CRA_d;												0						ATCATGCACCGAAATGTGAAG	0.572													3	7					0	0	1	0	0	
LOC407835	407835	broad.mit.edu	37	7	128767207	128767207	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:128767207C>T	uc003voo.2	+	1	883	c.636C>T	c.(634-636)TTC>TTT	p.F212F		NR_002144				SubName: Full=cDNA FLJ35806 fis, clone TESTI2005987, highly similar to Dual specificity mitogen-activated protein kinase kinase 2 (EC 2.7.12.2); SubName: Full=Mitogen-activated protein kinase kinase 2, isoform CRA_d;												0						TGTGTGACTTCGGGGTGAGCG	0.592													6	6					0	0	1	0	0	
SMO	6608	broad.mit.edu	37	7	128845085	128845085	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:128845085C>T	uc003vor.2	+	3	859	c.579C>T	c.(577-579)TGC>TGT	p.C193C	SMO_uc003vos.2_5'Flank	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	193	Extracellular (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						CAGGCCAGTGCGAAGTGCCCT	0.577			Mis		skin basal cell 								19	23					0	0	1	0	0	
SMO	6608	broad.mit.edu	37	7	128849216	128849216	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:128849216C>T	uc003vor.2	+	8	1724	c.1444C>T	c.(1444-1446)CGC>TGC	p.R482C	SMO_uc003vos.2_Missense_Mutation_p.R157C	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	482	Extracellular (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						TGAGTGGGAGCGCAGCTTCCG	0.592			Mis		skin basal cell 								13	28					0	0	1	0	0	
NRF1	4899	broad.mit.edu	37	7	129297378	129297378	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:129297378G>A	uc003voz.2	+	2	304	c.187G>A	c.(187-189)GCA>ACA	p.A63T	NRF1_uc003vpa.2_Missense_Mutation_p.A63T|NRF1_uc011kpa.1_5'UTR|NRF1_uc003vpb.2_Missense_Mutation_p.A63T	NM_005011	NP_005002	Q16656	NRF1_HUMAN	nuclear respiratory factor 1	63	Dimerization.|Asp/Glu-rich (acidic).				generation of precursor metabolites and energy|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1						CAACTCCACAGCAGCTGATGA	0.408													33	64					0	0	1	0	0	
KLHDC10	23008	broad.mit.edu	37	7	129770576	129770576	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:129770576G>A	uc003vpj.1	+	10	1454	c.1319G>A	c.(1318-1320)CGC>CAC	p.R440H	KLHDC10_uc003vpk.1_Missense_Mutation_p.R411H|KLHDC10_uc010lmb.1_Missense_Mutation_p.R337H	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	440											0						CTCATCGAACGCTTGAAATGA	0.453													32	77					0	0	1	0	0	
CPA2	1358	broad.mit.edu	37	7	129910557	129910557	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:129910557G>T	uc003vpq.2	+	4	332	c.313G>T	c.(313-315)GAA>TAA	p.E105*	CPA2_uc011kpc.1_Nonsense_Mutation_p.E105*	NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	105					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					AGAGAATGAAGAAATGCTTTT	0.393													20	58					1.50039e-11	1.64695e-11	1	1	0	
TSGA13	114960	broad.mit.edu	37	7	130356562	130356562	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:130356562C>T	uc003vqi.2	-	7	1054	c.597G>A	c.(595-597)CAG>CAA	p.Q199Q	COPG2_uc003vqh.1_5'Flank|TSGA13_uc003vqj.2_Silent_p.Q199Q	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	199										ovary(2)	2	Melanoma(18;0.0435)					ACATTTTCTTCTGTGTCCTCA	0.413													53	98					0	0	1	0	0	
MKLN1	4289	broad.mit.edu	37	7	131084189	131084189	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:131084189A>C	uc011kpm.1	+	6	764	c.700A>C	c.(700-702)AAT>CAT	p.N234H	MKLN1_uc011kpl.1_Missense_Mutation_p.N211H|MKLN1_uc010lmh.2_Missense_Mutation_p.N234H|MKLN1_uc003vqs.2_Missense_Mutation_p.N27H	NM_013255	NP_037387	Q9UL63	MKLN1_HUMAN	muskelin 1, intracellular mediator containing	234	CTLH.				signal transduction	cytoplasm	protein binding			breast(1)	1	Melanoma(18;0.162)					AAAGGCTGTAAATGGTATGAA	0.348													55	93					0	0	1	0	0	
EXOC4	60412	broad.mit.edu	37	7	133502136	133502136	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:133502136C>T	uc003vrk.2	+	11	1608	c.1573C>T	c.(1573-1575)CGA>TGA	p.R525*	EXOC4_uc011kpo.1_Nonsense_Mutation_p.R424*|EXOC4_uc003vrl.2_Nonsense_Mutation_p.R135*|EXOC4_uc011kpp.1_Nonsense_Mutation_p.R57*	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	525					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				GTGTCCTCTTCGAGAGTTTCT	0.413													11	29					0	0	1	0	0	
EXOC4	60412	broad.mit.edu	37	7	133749115	133749115	+	Missense_Mutation	SNP	A	G	G	rs138103779		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:133749115A>G	uc003vrk.2	+	18	2794	c.2759A>G	c.(2758-2760)TAC>TGC	p.Y920C	EXOC4_uc011kpo.1_Missense_Mutation_p.Y819C|EXOC4_uc003vrl.2_Missense_Mutation_p.Y530C|EXOC4_uc011kpp.1_Missense_Mutation_p.Y452C|EXOC4_uc011kpq.1_Missense_Mutation_p.Y208C	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	920					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				GGTGTGAAGTACACGGAGCTG	0.572													26	41					0	0	1	0	0	
LRGUK	136332	broad.mit.edu	37	7	133812199	133812199	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:133812199G>A	uc003vrm.1	+	1	95	c.79G>A	c.(79-81)GCC>ACC	p.A27T		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	27							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						CCGAACTGGAGCCCGATCGTT	0.572													39	109					0	0	1	0	0	
LRGUK	136332	broad.mit.edu	37	7	133859329	133859329	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:133859329G>T	uc003vrm.1	+	8	977	c.961G>T	c.(961-963)GAA>TAA	p.E321*		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	321	LRR 9.						ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						GAGAGAAATAGAATACATTAA	0.323													39	62					4.32679e-17	4.9986e-17	1	1	0	
LRGUK	136332	broad.mit.edu	37	7	133884125	133884125	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:133884125A>C	uc003vrm.1	+	14	1715	c.1699A>C	c.(1699-1701)AAA>CAA	p.K567Q		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	567	Guanylate kinase-like.						ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						CCTTTATATTAAAATTAATCA	0.333													57	101					0	0	1	0	0	
SLC35B4	84912	broad.mit.edu	37	7	133979591	133979591	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:133979591C>A	uc003vrn.2	-	10	1314	c.990G>T	c.(988-990)AAG>AAT	p.K330N	SLC35B4_uc010lmk.2_Missense_Mutation_p.K194N|SLC35B4_uc010lml.1_Intron	NM_032826	NP_116215	Q969S0	S35B4_HUMAN	solute carrier family 35, member B4	330						Golgi membrane|integral to membrane	UDP-N-acetylglucosamine transmembrane transporter activity|UDP-xylose transmembrane transporter activity			skin(1)	1						GGCCTCAGTTCTTCTTGCTGT	0.527													12	45					1.02788e-11	1.1298e-11	1	1	0	
BPGM	669	broad.mit.edu	37	7	134346766	134346766	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:134346766G>T	uc003vrv.2	+	3	1048	c.507G>T	c.(505-507)TGG>TGT	p.W169C	BPGM_uc003vrw.2_Missense_Mutation_p.W169C|BPGM_uc003vrx.2_Missense_Mutation_p.W169C	NM_199186	NP_954655	P07738	PMGE_HUMAN	bisphosphoglycerate mutase	169					glycolysis|respiratory gaseous exchange		2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity				0						TTCCCTATTGGAATGAAAGGA	0.468													31	55					2.61193e-14	2.9448e-14	1	1	0	
CALD1	800	broad.mit.edu	37	7	134552495	134552495	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:134552495T>G	uc003vrz.2	+	3	470	c.11T>G	c.(10-12)TTT>TGT	p.F4C	CALD1_uc003vry.2_Missense_Mutation_p.F4C|CALD1_uc003vsa.2_Missense_Mutation_p.F4C|CALD1_uc003vsb.2_Missense_Mutation_p.F4C|CALD1_uc010lmm.2_Missense_Mutation_p.F4C|CALD1_uc011kpt.1_5'UTR	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	4					cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						ATGGATGATTTTGAGCGTCGC	0.433													9	11					0	0	1	0	0	
CALD1	800	broad.mit.edu	37	7	134613557	134613557	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:134613557C>T	uc003vrz.2	+	4	583	c.124C>T	c.(124-126)CGC>TGC	p.R42C	CALD1_uc003vry.2_Missense_Mutation_p.R42C|CALD1_uc003vsa.2_Missense_Mutation_p.R42C|CALD1_uc003vsb.2_Missense_Mutation_p.R42C|CALD1_uc010lmm.2_Missense_Mutation_p.R42C|CALD1_uc011kpt.1_5'UTR|CALD1_uc003vsc.2_Missense_Mutation_p.R36C|CALD1_uc003vsd.2_Missense_Mutation_p.R36C|CALD1_uc011kpu.1_Missense_Mutation_p.R47C|CALD1_uc011kpv.1_5'UTR	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	42	Poly-Arg.|Myosin and calmodulin-binding (By similarity).				cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						CCGGGAACGGCGCCGCCGAGC	0.587													25	29					0	0	1	0	0	
CALD1	800	broad.mit.edu	37	7	134618087	134618087	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:134618087A>C	uc003vrz.2	+	5	1026	c.567A>C	c.(565-567)GAA>GAC	p.E189D	CALD1_uc003vry.2_Missense_Mutation_p.E189D|CALD1_uc003vsa.2_Missense_Mutation_p.E189D|CALD1_uc003vsb.2_Missense_Mutation_p.E189D|CALD1_uc010lmm.2_Missense_Mutation_p.E189D|CALD1_uc011kpt.1_5'UTR|CALD1_uc003vsc.2_Missense_Mutation_p.E183D|CALD1_uc003vsd.2_Missense_Mutation_p.E183D|CALD1_uc011kpu.1_Missense_Mutation_p.E194D|CALD1_uc011kpv.1_Missense_Mutation_p.E53D|CALD1_uc003vse.2_Missense_Mutation_p.E53D	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	189	Poly-Glu.|Myosin and calmodulin-binding (By similarity).				cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						aagacaaggaaaaggaggagg	0.214													6	13					0	0	1	0	0	
C7orf49	78996	broad.mit.edu	37	7	134852550	134852550	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:134852550C>T	uc003vsl.2	-	3	414	c.147G>A	c.(145-147)GCG>GCA	p.A49A	C7orf49_uc003vsh.2_Intron|C7orf49_uc003vsj.2_Silent_p.A20A|C7orf49_uc003vsk.2_RNA|C7orf49_uc003vsm.2_RNA|C7orf49_uc003vsn.2_Silent_p.A48A|C7orf49_uc003vso.2_5'UTR	NM_024033	NP_076938	Q9BWK5	MRI_HUMAN	modulator of retrovirus infection	49						cytoplasm				large_intestine(1)|ovary(1)	2						CAGTCCTTGTCGCAGGGAGTC	0.483													13	39					0	0	1	0	0	
FAM180A	389558	broad.mit.edu	37	7	135418926	135418926	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:135418926G>A	uc003vtd.2	-	3	585	c.319C>T	c.(319-321)CTC>TTC	p.L107F	FAM180A_uc010lmt.2_RNA|FAM180A_uc010lmu.2_Missense_Mutation_p.L107F	NM_205855	NP_995327	Q6UWF9	F180A_HUMAN	hypothetical protein LOC389558 precursor	107						extracellular region				ovary(2)	2						CTGGCGCTGAGCCGGCGGATG	0.607													50	83					0	0	1	0	0	
CHRM2	1129	broad.mit.edu	37	7	136700761	136700761	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:136700761G>T	uc003vtf.1	+	4	1772	c.1149G>T	c.(1147-1149)AAG>AAT	p.K383N	CHRM2_uc003vtg.1_Missense_Mutation_p.K383N|CHRM2_uc003vtj.1_Missense_Mutation_p.K383N|CHRM2_uc003vtk.1_Missense_Mutation_p.K383N|CHRM2_uc003vtl.1_Missense_Mutation_p.K383N|CHRM2_uc003vtm.1_Missense_Mutation_p.K383N|CHRM2_uc003vti.1_Missense_Mutation_p.K383N|CHRM2_uc003vto.1_Missense_Mutation_p.K383N|CHRM2_uc003vtn.1_Missense_Mutation_p.K383N|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	383	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CCCGGGAAAAGAAAGTCACCA	0.458													37	96					6.05902e-23	7.24288e-23	1	1	0	
AKR1D1	6718	broad.mit.edu	37	7	137761318	137761318	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:137761318T>C	uc003vtz.2	+	1	123	c.54T>C	c.(52-54)ATT>ATC	p.I18I	AKR1D1_uc011kqb.1_Silent_p.I18I|AKR1D1_uc011kqc.1_Intron|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Silent_p.I18I|AKR1D1_uc011kqf.1_Silent_p.I18I	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	18					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						GAAACAGCATTCCCATCATCG	0.433													27	48					0	0	1	0	0	
AKR1D1	6718	broad.mit.edu	37	7	137776597	137776597	+	Missense_Mutation	SNP	T	G	G	rs146747335		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:137776597T>G	uc003vtz.2	+	3	414	c.345T>G	c.(343-345)GAT>GAG	p.D115E	AKR1D1_uc011kqb.1_Missense_Mutation_p.D115E|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Missense_Mutation_p.D115E|AKR1D1_uc011kqf.1_Missense_Mutation_p.D115E|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	115					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						ATTATGTGGATCTTTACATCA	0.493													37	68					0	0	1	0	0	
TRIM24	8805	broad.mit.edu	37	7	138223421	138223421	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:138223421G>A	uc003vuc.2	+	7	1231	c.1016G>A	c.(1015-1017)CGC>CAC	p.R339H	TRIM24_uc003vub.2_Missense_Mutation_p.R339H	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	339	Potential.				cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						AAGGACCATCGCATGAAACTT	0.388													43	84					0	0	1	0	0	
ATP6V0A4	50617	broad.mit.edu	37	7	138413516	138413516	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:138413516C>T	uc003vuf.2	-	17	2238	c.2000G>A	c.(1999-2001)CGG>CAG	p.R667Q	ATP6V0A4_uc003vug.2_Missense_Mutation_p.R667Q|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.R667Q	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	667	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						CTGGGATTTCCGATGACTGGC	0.433													86	147					0	0	1	0	0	
KIAA1549	57670	broad.mit.edu	37	7	138602923	138602923	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:138602923C>T	uc011kql.1	-	2	1498	c.1449G>A	c.(1447-1449)ACG>ACA	p.T483T	KIAA1549_uc003vuk.3_Silent_p.T433T|KIAA1549_uc011kqj.1_Silent_p.T483T	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	483						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						AGGGGAAAAGCGTATTAAATA	0.458			O	BRAF	pilocytic astrocytoma								18	21					0	0	1	0	0	
KIAA1549	57670	broad.mit.edu	37	7	138603839	138603839	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:138603839A>G	uc011kql.1	-	2	582	c.533T>C	c.(532-534)ATC>ACC	p.I178T	KIAA1549_uc003vuk.3_Missense_Mutation_p.I128T|KIAA1549_uc011kqj.1_Missense_Mutation_p.I178T	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	178						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GCTGACTGTGATATACTGTAT	0.488			O	BRAF	pilocytic astrocytoma								52	94					0	0	1	0	0	
TTC26	79989	broad.mit.edu	37	7	138824735	138824735	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:138824735G>T	uc003vus.2	+	4	448	c.334G>T	c.(334-336)GCA>TCA	p.A112S	TTC26_uc003vuq.2_Missense_Mutation_p.A112S|TTC26_uc011kqm.1_Missense_Mutation_p.A112S|TTC26_uc003vur.3_Missense_Mutation_p.A112S|TTC26_uc011kqn.1_Missense_Mutation_p.A112S|TTC26_uc011kqo.1_Missense_Mutation_p.A81S|TTC26_uc011kqp.1_Missense_Mutation_p.A7S|TTC26_uc003vut.2_5'UTR|TTC26_uc011kqq.1_Missense_Mutation_p.A112S	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	112	TPR 2.						binding			ovary(1)	1						ACAAGCTGAAGCAGCTGGATT	0.338													30	64					8.58068e-18	9.97771e-18	1	1	0	
UBN2	254048	broad.mit.edu	37	7	138954206	138954206	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:138954206T>G	uc011kqr.1	+	8	1533	c.1533T>G	c.(1531-1533)GCT>GCG	p.A511A	UBN2_uc003vuv.2_Silent_p.A234A	NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	511										ovary(1)|skin(1)	2						ACCTTGAAGCTTTTGTGCCAT	0.393													30	62					0	0	1	0	0	
UBN2	254048	broad.mit.edu	37	7	138954246	138954246	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:138954246A>C	uc011kqr.1	+	8	1573	c.1573A>C	c.(1573-1575)AAG>CAG	p.K525Q	UBN2_uc003vuv.2_Missense_Mutation_p.K248Q	NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	525										ovary(1)|skin(1)	2						AAAACGTCTGAAGAAGTTACA	0.408													12	63					0	0	1	0	0	
SLC37A3	84255	broad.mit.edu	37	7	140045060	140045060	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:140045060G>T	uc003vvo.2	-	12	1296	c.1130C>A	c.(1129-1131)TCT>TAT	p.S377Y	SLC37A3_uc003vvn.2_5'Flank|SLC37A3_uc003vvp.2_Intron|SLC37A3_uc010lnh.2_Intron	NM_207113	NP_996996	Q8NCC5	SPX3_HUMAN	solute carrier family 37 (glycerol-3-phosphate	377	Helical; (Potential).				carbohydrate transport|transmembrane transport	integral to membrane				ovary(3)	3	Melanoma(164;0.0142)					ATCATTTGGAGAACCTGTGAG	0.498													11	33					0.000978159	0.000993685	1	1	0	
BRAF	673	broad.mit.edu	37	7	140501256	140501256	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:140501256A>G	uc003vwc.3	-	6	877	c.816T>C	c.(814-816)TGT>TGC	p.C272C		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	272	Phorbol-ester/DAG-type.	Zinc 2 (By similarity).			activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	CTTCTGTACTACAACGCTGGT	0.348		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				22	34					0	0	1	0	0	
MRPS33	51650	broad.mit.edu	37	7	140706259	140706259	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:140706259C>T	uc003vwd.3	-	3	448	c.292G>A	c.(292-294)GAA>AAA	p.E98K	MRPS33_uc003vwe.3_Missense_Mutation_p.E98K	NM_016071	NP_057155	Q9Y291	RT33_HUMAN	mitochondrial ribosomal protein S33	98					translation	mitochondrial small ribosomal subunit	structural constituent of ribosome				0	Melanoma(164;0.00956)					CTTTTCCCTTCTCCTTTCTTT	0.403													33	88					0	0	1	0	0	
OR9A4	130075	broad.mit.edu	37	7	141618771	141618771	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:141618771T>G	uc003vwu.1	+	1	96	c.96T>G	c.(94-96)TTT>TTG	p.F32L		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					TATTCTTCTTTTTCTACTTGG	0.403													72	180					0	0	1	0	0	
MGAM	8972	broad.mit.edu	37	7	141705352	141705352	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:141705352A>C	uc003vwy.2	+	2	76	c.22A>C	c.(22-24)AAA>CAA	p.K8Q		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	8	Cytoplasmic (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GAAGCTGAAAAAATTTACTAC	0.279													4	8					0	0	1	0	0	
EPHB6	2051	broad.mit.edu	37	7	142568100	142568100	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:142568100C>A	uc011kst.1	+	18	3528	c.2741C>A	c.(2740-2742)GCA>GAA	p.A914E	EPHB6_uc011ksu.1_Missense_Mutation_p.A914E|EPHB6_uc003wbs.2_Missense_Mutation_p.A622E|EPHB6_uc003wbt.2_Missense_Mutation_p.A388E|EPHB6_uc003wbu.2_Missense_Mutation_p.A622E|EPHB6_uc003wbv.2_Missense_Mutation_p.A298E	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	914	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					CTGGTGGCTGCATTTGACAAG	0.607													48	117					2.51966e-14	2.84312e-14	1	1	0	
TRPV6	55503	broad.mit.edu	37	7	142583225	142583225	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:142583225G>T	uc003wbx.1	-	1	253	c.37C>A	c.(37-39)CTC>ATC	p.L13I		NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	13	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CATAGGCAGAGAATTAGCCCT	0.612													31	77					4.65686e-17	5.37613e-17	1	1	0	
TRPV5	56302	broad.mit.edu	37	7	142611833	142611833	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:142611833A>G	uc003wby.1	-	12	1760	c.1496T>C	c.(1495-1497)GTG>GCG	p.V499A		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	499	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CAAGATGACCACAGCCATCAG	0.468													5	29					0	0	1	0	0	
TRPV5	56302	broad.mit.edu	37	7	142622683	142622683	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:142622683G>A	uc003wby.1	-	8	1327	c.1063C>T	c.(1063-1065)CGT>TGT	p.R355C	TRPV5_uc003wbz.2_Missense_Mutation_p.R355C	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	355	Extracellular (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity	p.R355L(1)|p.R355H(1)		ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TTGCCACCACGAAACTTAAGG	0.517													32	46					0	0	1	0	0	
TRPV5	56302	broad.mit.edu	37	7	142625919	142625919	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:142625919G>A	uc003wby.1	-	6	893	c.629C>T	c.(628-630)ACC>ATC	p.T210I	TRPV5_uc003wbz.2_Missense_Mutation_p.T210I	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	210	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GCAGGCAAAGGTTTTGTTGGG	0.572													31	64					0	0	1	0	0	
TRPV5	56302	broad.mit.edu	37	7	142626165	142626165	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:142626165G>A	uc003wby.1	-	5	802	c.538C>T	c.(538-540)CGG>TGG	p.R180W	TRPV5_uc003wbz.2_Missense_Mutation_p.R180W	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	180	ANK 4.|Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					ATGAGCAGCCGCACGATCTCC	0.612													16	24					0	0	1	0	0	
CLCN1	1180	broad.mit.edu	37	7	143047729	143047729	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:143047729C>T	uc003wcr.1	+	22	2664	c.2577C>T	c.(2575-2577)GGC>GGT	p.G859G	CLCN1_uc011ktc.1_Silent_p.G471G	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	859	CBS 2.|Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					AGCTCAGGGGCGTCCTGGCCC	0.557													48	124					0	0	1	0	0	
ZYX	7791	broad.mit.edu	37	7	143087027	143087027	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:143087027T>C	uc003wcw.2	+	9	1726	c.1571T>C	c.(1570-1572)GTC>GCC	p.V524A	ZYX_uc011ktd.1_Missense_Mutation_p.V367A|ZYX_uc003wcx.2_Missense_Mutation_p.V524A|ZYX_uc011kte.1_Missense_Mutation_p.V493A|ZYX_uc011ktf.1_Missense_Mutation_p.V367A	NM_001010972	NP_001010972	Q15942	ZYX_HUMAN	zyxin	524	LIM zinc-binding 3.				cell adhesion|cell-cell signaling|interspecies interaction between organisms|signal transduction	cell-cell adherens junction|cytoplasm|focal adhesion|integral to plasma membrane|nucleus|stress fiber	protein binding|zinc ion binding				0	Melanoma(164;0.205)					GTGCGAGTGGTCGCCCTGGAC	0.607													20	85					0	0	1	0	0	
FAM115A	9747	broad.mit.edu	37	7	143573678	143573678	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:143573678G>A	uc003wdo.1	-	2	157	c.24C>T	c.(22-24)TTC>TTT	p.F8F	FAM115A_uc011ktu.1_Intron|FAM115A_uc003wdp.1_Silent_p.F8F	NM_014719	NP_055534	Q9Y4C2	F115A_HUMAN	hypothetical protein LOC9747	8											0	Melanoma(164;0.0903)					TAAGGGCCTCGAAGGCAGCAG	0.468													36	36					0	0	1	0	0	
OR2A2	442361	broad.mit.edu	37	7	143806743	143806743	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:143806743C>T	uc011ktz.1	+	1	68	c.68C>T	c.(67-69)GCG>GTG	p.A23V		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CCAGCACTGGCGATTCTCCTC	0.512													50	70					0	0	1	0	0	
OR2A14	135941	broad.mit.edu	37	7	143826380	143826380	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:143826380T>C	uc011kua.1	+	1	175	c.175T>C	c.(175-177)TAC>CAC	p.Y59H		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CACACCCATGTACTTCTTCCT	0.483													76	142					0	0	1	0	0	
OR2A14	135941	broad.mit.edu	37	7	143826408	143826408	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:143826408T>C	uc011kua.1	+	1	203	c.203T>C	c.(202-204)GTT>GCT	p.V68A		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CTGGCCATTGTTGACATATCC	0.468													78	187					0	0	1	0	0	
NOBOX	135935	broad.mit.edu	37	7	144098471	144098471	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:144098471C>A	uc011kue.1	-	4	512	c.512G>T	c.(511-513)AGA>ATA	p.R171I		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	171					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GGCTAGAGTTCTGTCTTTGTG	0.632													16	19					8.60227e-14	9.65208e-14	1	1	0	
CNTNAP2	26047	broad.mit.edu	37	7	146997332	146997332	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:146997332G>A	uc003weu.1	+	9	1964	c.1448G>A	c.(1447-1449)CGA>CAA	p.R483Q		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	483	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TCAGCAGTTCGAACTAATAGT	0.423										HNSCC(39;0.1)			35	60					0	0	1	0	0	
CNTNAP2	26047	broad.mit.edu	37	7	147092811	147092811	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:147092811G>A	uc003weu.1	+	10	2125	c.1609G>A	c.(1609-1611)GCA>ACA	p.A537T		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	537	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATACGAAGTGGCACAAAGGAA	0.438										HNSCC(39;0.1)			62	138					0	0	1	0	0	
CNTNAP2	26047	broad.mit.edu	37	7	147600755	147600755	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:147600755G>A	uc003weu.1	+	14	2713	c.2197G>A	c.(2197-2199)GAA>AAA	p.E733K		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	733	Extracellular (Potential).|Fibrinogen C-terminal.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CTGCGGCATCGAACGCAACTG	0.572										HNSCC(39;0.1)			8	29					0	0	1	0	0	
CNTNAP2	26047	broad.mit.edu	37	7	147844725	147844725	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:147844725C>T	uc003weu.1	+	17	3213	c.2697C>T	c.(2695-2697)GAC>GAT	p.D899D		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	899	Laminin G-like 3.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TACAGGTGGACCGGCTACCGC	0.562										HNSCC(39;0.1)			41	65					0	0	1	0	0	
EZH2	2146	broad.mit.edu	37	7	148504761	148504761	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:148504761C>T	uc003wfd.1	-	20	2384	c.2218G>A	c.(2218-2220)GAA>AAA	p.E740K	EZH2_uc011kug.1_Missense_Mutation_p.E689K|EZH2_uc003wfb.1_Missense_Mutation_p.E745K|EZH2_uc003wfc.1_Missense_Mutation_p.E701K|EZH2_uc011kuh.1_Missense_Mutation_p.E731K	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	740					negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding			haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			ATTTCTCTTTCGATGCCGACA	0.507			Mis		DLBCL								8	8					0	0	1	0	0	
ZNF786	136051	broad.mit.edu	37	7	148768115	148768115	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:148768115G>T	uc003wfh.2	-	4	1886	c.1749C>A	c.(1747-1749)CAC>CAA	p.H583Q	ZNF786_uc011kuk.1_Missense_Mutation_p.H546Q|ZNF786_uc003wfi.2_Missense_Mutation_p.H497Q	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	583	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			GCACGCGCAAGTGCTCCGTGA	0.642													16	34					1.15088e-07	1.20949e-07	1	1	0	
ZNF425	155054	broad.mit.edu	37	7	148800887	148800887	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:148800887C>T	uc003wfj.2	-	4	2149	c.2076G>A	c.(2074-2076)AGG>AGA	p.R692R		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	692					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			ACTGGAAGGGCCTCTCTCCAC	0.562													48	70					0	0	1	0	0	
ZNF425	155054	broad.mit.edu	37	7	148801117	148801117	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:148801117C>T	uc003wfj.2	-	4	1919	c.1846G>A	c.(1846-1848)GAG>AAG	p.E616K		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	616	C2H2-type 15.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			AAAGTCTTCTCGCATTCAGGA	0.547													56	109					0	0	1	0	0	
ZNF425	155054	broad.mit.edu	37	7	148815333	148815333	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:148815333G>A	uc003wfj.2	-	2	199	c.126C>T	c.(124-126)TAC>TAT	p.Y42Y		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	42	KRAB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CAAGGGTCTCGTAATTGGTCT	0.443													64	117					0	0	1	0	0	
ZNF212	7988	broad.mit.edu	37	7	148947428	148947428	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:148947428G>A	uc003wfp.2	+	2	299	c.203G>A	c.(202-204)CGC>CAC	p.R68H		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	68					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			CTGGAGGGGCGCACGGGGACA	0.642													43	70					0	0	1	0	0	
ZNF212	7988	broad.mit.edu	37	7	148950967	148950967	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:148950967G>A	uc003wfp.2	+	5	1045	c.949G>A	c.(949-951)GAA>AAA	p.E317K		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	317	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			CCGCCCCTACGAATGTTCTGA	0.567													26	52					0	0	1	0	0	
ZNF746	155061	broad.mit.edu	37	7	149172249	149172249	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:149172249C>T	uc003wfw.2	-	7	1432	c.1161G>A	c.(1159-1161)CCG>CCA	p.P387P	ZNF746_uc010lpi.2_Silent_p.P388P	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	387					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GGCCCACTGGCGGTTTACACC	0.667													8	18					0	0	1	0	0	
SSPO	23145	broad.mit.edu	37	7	149498835	149498835	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:149498835A>G	uc010lpk.2	+	51	7287	c.7287A>G	c.(7285-7287)CTA>CTG	p.L2429L		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2429					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCAGGAATCTACTTATGTGGC	0.597													14	19					0	0	1	0	0	
GIMAP8	155038	broad.mit.edu	37	7	150174636	150174636	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:150174636G>A	uc003whj.2	+	5	2096	c.1766G>A	c.(1765-1767)CGC>CAC	p.R589H		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	589						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding	p.R589H(1)		skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GCCCTTCGGCGCATTTTTAAA	0.458													36	75					0	0	1	0	0	
AGAP3	116988	broad.mit.edu	37	7	150837140	150837140	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:150837140A>C	uc003wjg.1	+	13	1744	c.1741A>C	c.(1741-1743)AAG>CAG	p.K581Q	AGAP3_uc003wje.1_Intron|AGAP3_uc003wjj.1_Missense_Mutation_p.K80Q|AGAP3_uc003wjk.1_5'UTR	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	545	PH.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						CAACCGGAAGAAGCACCGGAG	0.562													3	12					0	0	1	0	0	
PRKAG2	51422	broad.mit.edu	37	7	151265922	151265922	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:151265922G>A	uc003wkk.2	-	11	1724	c.1113C>T	c.(1111-1113)TTC>TTT	p.F371F	PRKAG2_uc003wki.2_Silent_p.F130F|PRKAG2_uc011kvl.1_Silent_p.F246F|PRKAG2_uc003wkj.2_Silent_p.F327F|PRKAG2_uc003wkl.2_Intron|PRKAG2_uc010lqe.1_RNA	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	371	CBS 2.				ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		ATACAGCATCGAAGAGGCTGT	0.403													27	64					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151845714	151845714	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:151845714G>A	uc003wla.2	-	52	13517	c.13298C>T	c.(13297-13299)GCT>GTT	p.A4433V	MLL3_uc003wkz.2_Missense_Mutation_p.A3551V|MLL3_uc003wkx.2_Missense_Mutation_p.A591V|MLL3_uc003wky.2_Missense_Mutation_p.A1997V	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4433					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding	p.A4433T(1)		large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGACCACAGAGCGCAGTTCAA	0.488			N		medulloblastoma								39	87					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151846058	151846058	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:151846058G>A	uc003wla.2	-	52	13173	c.12954C>T	c.(12952-12954)GTC>GTT	p.V4318V	MLL3_uc003wkz.2_Silent_p.V3436V|MLL3_uc003wkx.2_Silent_p.V476V|MLL3_uc003wky.2_Silent_p.V1882V	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4318					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GCTTGGCCTCGACTTGGGCTG	0.552			N		medulloblastoma								13	35					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151935840	151935840	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:151935840A>C	uc003wla.2	-	15	2823	c.2604T>G	c.(2602-2604)ATT>ATG	p.I868M	MLL3_uc003wkz.2_Translation_Start_Site	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	868					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGGGTTTAAAAATTTCCCGAC	0.423			N		medulloblastoma								32	78					0	0	1	0	0	
XRCC2	7516	broad.mit.edu	37	7	152345946	152345946	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:152345946T>C	uc003wld.2	-	3	710	c.624A>G	c.(622-624)GAA>GAG	p.E208E		NM_005431	NP_005422	O43543	XRCC2_HUMAN	X-ray repair cross complementing protein 2	208					meiosis	nucleus	ATP binding|DNA binding|DNA-dependent ATPase activity			breast(1)|liver(1)	2		all_hematologic(28;0.0592)|Prostate(32;0.081)	OV - Ovarian serous cystadenocarcinoma(82;0.0423)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0429)		CATGAGAAGGTTCTTCTGATG	0.443								Homologous_recombination					74	141					0	0	1	0	0	
DPP6	1804	broad.mit.edu	37	7	154681193	154681193	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:154681193G>T	uc003wlk.2	+	25	2533	c.2404G>T	c.(2404-2406)GAA>TAA	p.E802*	DPP6_uc003wli.2_Nonsense_Mutation_p.E738*|DPP6_uc003wlm.2_Nonsense_Mutation_p.E740*|DPP6_uc011kvq.1_Nonsense_Mutation_p.E695*	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	802	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			GCACACAGCAGAACTCATTAC	0.383													5	11					0.00198382	0.00200883	1	1	0	
DPP6	1804	broad.mit.edu	37	7	154684055	154684055	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:154684055C>T	uc003wlk.2	+	26	2592	c.2463C>T	c.(2461-2463)GAC>GAT	p.D821D	DPP6_uc003wli.2_Silent_p.D757D|DPP6_uc003wlm.2_Silent_p.D759D|DPP6_uc011kvq.1_Silent_p.D714D	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	821	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TTTACCCGGACGAAAGCCATT	0.512													22	64					0	0	1	0	0	
RBM33	155435	broad.mit.edu	37	7	155473530	155473530	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:155473530G>A	uc010lqk.1	+	5	863	c.495G>A	c.(493-495)GAG>GAA	p.E165E	RBM33_uc003wme.2_Silent_p.E165E	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	165	Glu-rich.						nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		ATGTGGAAGAGCCAGAGGAGG	0.418													17	35					0	0	1	0	0	
RBM33	155435	broad.mit.edu	37	7	155530977	155530977	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:155530977G>A	uc010lqk.1	+	11	1985	c.1617G>A	c.(1615-1617)GGG>GGA	p.G539G	RBM33_uc011kvv.1_Silent_p.G348G	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	539	Pro-rich.						nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		GTCCGGTGGGGATTCTGCACT	0.612													42	74					0	0	1	0	0	
RBM33	155435	broad.mit.edu	37	7	155538228	155538228	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:155538228A>G	uc010lqk.1	+	14	3279	c.2911A>G	c.(2911-2913)ACA>GCA	p.T971A	RBM33_uc011kvv.1_Missense_Mutation_p.T780A|RBM33_uc003wmg.2_5'Flank	NM_053043	NP_444271	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	971							nucleotide binding|RNA binding			ovary(1)	1	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		CACGCACAGGACAAACAGTGG	0.582													5	12					0	0	1	0	0	
SHH	6469	broad.mit.edu	37	7	155599139	155599139	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:155599139G>A	uc003wmk.1	-	2	564	c.413C>T	c.(412-414)TCT>TTT	p.S138F	SHH_uc003wmh.1_RNA|SHH_uc003wmi.1_Missense_Mutation_p.S51F|SHH_uc003wmj.1_Missense_Mutation_p.S51F	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	138					androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTAGTGCAGAGACTCCTCTGA	0.637													14	31					0	0	1	0	0	
SHH	6469	broad.mit.edu	37	7	155604547	155604547	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:155604547T>G	uc003wmk.1	-	1	421	c.270A>C	c.(268-270)GAA>GAC	p.E90D	SHH_uc003wmh.1_5'Flank|SHH_uc003wmi.1_5'Flank|SHH_uc003wmj.1_5'Flank	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	90					androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTCCGGTGTTTTCTTCATCCT	0.542													89	151					0	0	1	0	0	
RNF32	140545	broad.mit.edu	37	7	156437272	156437272	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:156437272G>A	uc003wmo.2	+	3	277	c.95G>A	c.(94-96)CGA>CAA	p.R32Q	RNF32_uc010lql.1_RNA|RNF32_uc010lqm.2_Missense_Mutation_p.R32Q|RNF32_uc003wmp.2_Missense_Mutation_p.R32Q|RNF32_uc003wmq.2_Missense_Mutation_p.R32Q|RNF32_uc003wmr.2_Missense_Mutation_p.R32Q|RNF32_uc003wms.2_Missense_Mutation_p.R32Q|RNF32_uc003wmu.2_RNA|RNF32_uc003wmt.2_Missense_Mutation_p.R32Q	NM_030936	NP_112198	Q9H0A6	RNF32_HUMAN	ring finger protein 32	32						aggresome|endosome	protein binding|zinc ion binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00291)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		CTTCAACTTCGAAATCTTTCA	0.328													24	52					0	0	1	0	0	
NOM1	64434	broad.mit.edu	37	7	156752741	156752741	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:156752741T>C	uc003wmy.2	+	4	1520	c.1505T>C	c.(1504-1506)ATC>ACC	p.I502T	NOM1_uc010lqp.1_5'Flank	NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	502	MIF4G.				RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		ATTGAACTGATCTTGTTAATG	0.398													39	60					0	0	1	0	0	
DNAJB6	10049	broad.mit.edu	37	7	157177652	157177652	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:157177652G>A	uc003wnk.2	+	7	724	c.570G>A	c.(568-570)TCG>TCA	p.S190S	DNAJB6_uc003wnj.2_Silent_p.S190S|DNAJB6_uc003wnl.2_Silent_p.S177S|DNAJB6_uc011kvy.1_Silent_p.S141S|DNAJB6_uc011kvz.1_Intron|DNAJB6_uc010lqt.2_Silent_p.S190S	NM_058246	NP_490647	O75190	DNJB6_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 6	190	Interaction with KRT18.				intermediate filament organization|negative regulation of caspase activity|protein folding|response to unfolded protein	nucleus|perinuclear region of cytoplasm	ATPase activator activity|chaperone binding|heat shock protein binding|unfolded protein binding	p.S190S(1)		ovary(2)	2	all_neural(206;0.181)	all_epithelial(9;0.000606)|all_hematologic(28;0.00287)|Acute lymphoblastic leukemia(9;0.0647)|Ovarian(593;0.196)	OV - Ovarian serous cystadenocarcinoma(82;0.00399)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		ACTTCAAATCGATATCAACTT	0.403													41	65					0	0	1	0	0	
PTPRN2	5799	broad.mit.edu	37	7	157341698	157341698	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:157341698T>C	uc003wno.2	-	22	3039	c.2918A>G	c.(2917-2919)GAT>GGT	p.D973G	PTPRN2_uc003wnp.2_Missense_Mutation_p.D956G|PTPRN2_uc003wnq.2_Missense_Mutation_p.D944G|PTPRN2_uc003wnr.2_Missense_Mutation_p.D935G|PTPRN2_uc011kwa.1_Missense_Mutation_p.D996G|PTPRN2_uc003wnn.2_RNA	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	973	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CGCTGCGATATCAATCTCTTT	0.532													33	50					0	0	1	0	0	
PTPRN2	5799	broad.mit.edu	37	7	157903532	157903532	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:157903532G>A	uc003wno.2	-	10	1753	c.1632C>T	c.(1630-1632)TTC>TTT	p.F544F	PTPRN2_uc003wnp.2_Silent_p.F527F|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Silent_p.F506F|PTPRN2_uc011kwa.1_Silent_p.F567F	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	544	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CCACGTCAGCGAACGCACTGC	0.667													6	1					0	0	1	0	0	
NCAPG2	54892	broad.mit.edu	37	7	158437017	158437017	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:158437017A>C	uc003wnv.1	-	27	3489	c.3344T>G	c.(3343-3345)TTC>TGC	p.F1115C	NCAPG2_uc010lqu.1_Missense_Mutation_p.F860C|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Missense_Mutation_p.F1115C|NCAPG2_uc011kwe.1_Missense_Mutation_p.F1115C|NCAPG2_uc011kwc.1_Missense_Mutation_p.F569C|NCAPG2_uc011kwd.1_Missense_Mutation_p.F558C	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	1115					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		AATTTCCATGAATGTCTTTAG	0.353													44	107					0	0	1	0	0	
NCAPG2	54892	broad.mit.edu	37	7	158456966	158456966	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:158456966A>G	uc003wnv.1	-	15	1870	c.1725T>C	c.(1723-1725)CGT>CGC	p.R575R	NCAPG2_uc010lqu.1_Silent_p.R367R|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Silent_p.R575R|NCAPG2_uc011kwe.1_Silent_p.R575R|NCAPG2_uc011kwc.1_Silent_p.R76R|NCAPG2_uc011kwd.1_Silent_p.R76R	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	575					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		TTAAGCAATGACGAATAACGT	0.398													32	81					0	0	1	0	0	
WDR60	55112	broad.mit.edu	37	7	158715184	158715184	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr7:158715184G>A	uc003woe.3	+	16	2196	c.2038G>A	c.(2038-2040)GTG>ATG	p.V680M	WDR60_uc010lqv.2_Intron|WDR60_uc010lqw.2_Missense_Mutation_p.V312M	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	680										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		CGTCCTCTGTGTGTGGGATAT	0.547													15	22					0	0	1	0	0	
ARHGEF10	9639	broad.mit.edu	37	8	1842726	1842726	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:1842726C>A	uc003wpr.2	+	13	1606	c.1428C>A	c.(1426-1428)GTC>GTA	p.V476V	ARHGEF10_uc003wpq.1_Silent_p.V501V|ARHGEF10_uc003wps.2_Silent_p.V438V|ARHGEF10_uc003wpt.2_Silent_p.V352V|ARHGEF10_uc003wpv.2_Silent_p.V209V|ARHGEF10_uc010lre.2_Silent_p.V156V	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	501	DH.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TAGGCGATGTCTTCGTGGCTT	0.547													15	20					1.02788e-11	1.1298e-11	1	1	0	
ARHGEF10	9639	broad.mit.edu	37	8	1904965	1904965	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:1904965G>A	uc003wpr.2	+	29	3749	c.3571G>A	c.(3571-3573)GTC>ATC	p.V1191I	ARHGEF10_uc003wps.2_Missense_Mutation_p.V1153I|ARHGEF10_uc010lre.2_Missense_Mutation_p.V842I	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	1216					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		CAAATTCATCGTCCTGGCCAC	0.517													21	31					0	0	1	0	0	
MYOM2	9172	broad.mit.edu	37	8	2037977	2037977	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:2037977G>A	uc003wpx.3	+	15	1929	c.1791G>A	c.(1789-1791)TCG>TCA	p.S597S	MYOM2_uc011kwi.1_Silent_p.S22S	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	597	Fibronectin type-III 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GCGAACCTTCGGAGATAACGT	0.562													24	21					0	0	1	0	0	
CSMD1	64478	broad.mit.edu	37	8	2824263	2824263	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:2824263A>G	uc011kwk.1	-	58	9322	c.8932T>C	c.(8932-8934)TCC>CCC	p.S2978P	CSMD1_uc011kwj.1_Missense_Mutation_p.S2307P|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2978	Extracellular (Potential).|Sushi 23.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTGCCACAGGACACGGCTGTT	0.502													9	8					0	0	1	0	0	
CSMD1	64478	broad.mit.edu	37	8	3205548	3205548	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:3205548C>T	uc011kwk.1	-	22	3833	c.3443G>A	c.(3442-3444)CGA>CAA	p.R1148Q	CSMD1_uc011kwj.1_Missense_Mutation_p.R540Q|CSMD1_uc003wqe.2_Missense_Mutation_p.R304Q	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1148	Extracellular (Potential).|CUB 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTGGAAGCTTCGTGTTCTAAG	0.353													8	5					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	8	7807605	7807605	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:7807605G>T	uc010lro.1	+	5	472	c.190G>T	c.(190-192)GAG>TAG	p.E64*		NM_001039615	NP_001034704			zinc finger protein 705D																		GCAAGGAAAAGAGCTGTGGTG	0.408													10	73					1.5842e-08	1.6863e-08	1	1	0	
SGK223	157285	broad.mit.edu	37	8	8235348	8235348	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:8235348C>A	uc003wsh.3	-	2	571	c.571G>T	c.(571-573)GAA>TAA	p.E191*		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	191							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GAGGGTTTTTCTTTGTGCACA	0.597													32	38					4.74835e-14	5.33807e-14	1	1	0	
PPP1R3B	79660	broad.mit.edu	37	8	8998978	8998978	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:8998978G>A	uc003wsn.3	-	2	349	c.184C>T	c.(184-186)CGG>TGG	p.R62W	PPP1R3B_uc003wso.3_Missense_Mutation_p.R61W	NM_024607	NP_078883	Q86XI6	PPR3B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	62					glycogen metabolic process					ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(149;0.0717)|READ - Rectum adenocarcinoma(644;0.241)		AAGGACACCCGCTTTTTCACC	0.537													40	39					0	0	1	0	0	
TNKS	8658	broad.mit.edu	37	8	9562212	9562212	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:9562212C>T	uc003wss.2	+	6	1152	c.1147C>T	c.(1147-1149)CGA>TGA	p.R383*	TNKS_uc011kwv.1_Nonsense_Mutation_p.R383*|TNKS_uc011kww.1_Nonsense_Mutation_p.R146*	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	383	ANK 4.				mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		CAACAGAGTTCGAATAGTTCA	0.393													21	38					0	0	1	0	0	
PRSS55	203074	broad.mit.edu	37	8	10396280	10396280	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:10396280T>C	uc003wta.2	+	5	1051	c.1036T>C	c.(1036-1038)TTG>CTG	p.L346L	uc010lru.2_Intron|PRSS55_uc003wtb.2_Intron	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	346	Helical; (Potential).				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						GTCCCATGTGTTGTTCAGAGC	0.537													67	82					0	0	1	0	0	
RP1L1	94137	broad.mit.edu	37	8	10466733	10466733	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:10466733G>A	uc003wtc.2	-	4	5104	c.4875C>T	c.(4873-4875)GGC>GGT	p.G1625G		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1625					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGGGCCCCAGGCCCAGGGTCC	0.711													19	11					0	0	1	0	0	
RP1L1	94137	broad.mit.edu	37	8	10469605	10469605	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:10469605G>A	uc003wtc.2	-	4	2232	c.2003C>T	c.(2002-2004)TCT>TTT	p.S668F		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	668					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCGGTAGTGAGAATGCCTGGG	0.652													33	36					0	0	1	0	0	
BLK	640	broad.mit.edu	37	8	11400775	11400775	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:11400775G>A	uc003wty.2	+	2	623	c.42G>A	c.(40-42)CCG>CCA	p.P14P	BLK_uc003wtz.2_Intron	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	14					intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		AGGAAAAGCCGATCAAAGAGA	0.607													19	36					0	0	1	0	0	
USP17L2	377630	broad.mit.edu	37	8	11994797	11994797	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:11994797C>T	uc003wvc.1	-	1	1473	c.1473G>A	c.(1471-1473)TCG>TCA	p.S491S	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	491					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						TCCGGGTCGTCGAAGAGAGGT	0.517													14	8					0	0	1	0	0	
DLC1	10395	broad.mit.edu	37	8	12947955	12947955	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:12947955G>A	uc003wwm.2	-	15	4324	c.3880C>T	c.(3880-3882)CGT>TGT	p.R1294C	DLC1_uc003wwk.1_Missense_Mutation_p.R857C|DLC1_uc003wwl.1_Missense_Mutation_p.R891C|DLC1_uc011kxx.1_Missense_Mutation_p.R783C	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	1294					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding	p.R1294C(1)		ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TAGGAATTACGACATCGGCTC	0.512													25	31					0	0	1	0	0	
TUSC3	7991	broad.mit.edu	37	8	15588214	15588214	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:15588214G>T	uc003wwt.2	+	7	1048	c.838G>T	c.(838-840)GAA>TAA	p.E280*	TUSC3_uc003wws.2_Nonsense_Mutation_p.E280*|TUSC3_uc003wwu.2_Nonsense_Mutation_p.E280*|TUSC3_uc003wwv.2_Nonsense_Mutation_p.E280*|TUSC3_uc003www.2_Nonsense_Mutation_p.E280*|TUSC3_uc003wwx.2_Intron|TUSC3_uc003wwy.2_Intron	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	280	Helical; (Potential).				cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		GTTTGTGGCAGAATCACACAT	0.363													10	13					1.58986e-06	1.65575e-06	1	1	0	
MSR1	4481	broad.mit.edu	37	8	16026226	16026226	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:16026226C>A	uc003wwz.2	-	4	569	c.371G>T	c.(370-372)AGA>ATA	p.R124I	MSR1_uc010lsu.2_Missense_Mutation_p.R142I|MSR1_uc003wxa.2_Missense_Mutation_p.R124I|MSR1_uc003wxb.2_Missense_Mutation_p.R124I|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	124	Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		ATGCTGGATTCTCTTCTCCAT	0.378													66	87					8.3131e-28	1.0101e-27	1	1	0	
MSR1	4481	broad.mit.edu	37	8	16026290	16026290	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:16026290C>A	uc003wwz.2	-	4	505	c.307G>T	c.(307-309)GAC>TAC	p.D103Y	MSR1_uc010lsu.2_Missense_Mutation_p.D121Y|MSR1_uc003wxa.2_Missense_Mutation_p.D103Y|MSR1_uc003wxb.2_Missense_Mutation_p.D103Y|MSR1_uc011kxz.1_Intron	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	103	Spacer (Probable).|Extracellular (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		TCTTCGCTGTCATTTCCTTTT	0.383													57	74					1.11015e-26	1.34552e-26	1	1	0	
CNOT7	29883	broad.mit.edu	37	8	17094768	17094768	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:17094768A>C	uc003wxf.1	-	4	594	c.426T>G	c.(424-426)ACT>ACG	p.T142T	CNOT7_uc003wxg.1_Silent_p.T142T|CNOT7_uc003wxh.1_Silent_p.T142T	NM_013354	NP_037486	Q9UIV1	CNOT7_HUMAN	CCR4-NOT transcription complex, subunit 7	142					carbohydrate metabolic process|nuclear-transcribed mRNA poly(A) tail shortening	CCR4-NOT complex|cytoplasmic mRNA processing body|cytosol	nucleic acid binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1				Colorectal(111;0.0523)|COAD - Colon adenocarcinoma(73;0.209)		CCACTCCAGAAGTCATAAGAA	0.403													61	57					0	0	1	0	0	
VPS37A	137492	broad.mit.edu	37	8	17142068	17142068	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:17142068C>A	uc003wxj.2	+	10	1409	c.1056C>A	c.(1054-1056)TTC>TTA	p.F352L	VPS37A_uc003wxk.2_Missense_Mutation_p.F327L|VPS37A_uc003wxl.2_Missense_Mutation_p.F123L	NM_152415	NP_689628	Q8NEZ2	VP37A_HUMAN	hepatocellular carcinoma related protein 1	352	VPS37 C-terminal.				cellular membrane organization|endosome transport|protein transport	centrosome|late endosome membrane|nucleus					0				Colorectal(111;0.0553)|COAD - Colon adenocarcinoma(73;0.212)		CAGAAGACTTCTTGGAGGGAA	0.383													43	43					1.15505e-17	1.34158e-17	1	1	0	
MTUS1	57509	broad.mit.edu	37	8	17613066	17613066	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:17613066T>G	uc003wxv.2	-	2	725	c.251A>C	c.(250-252)AAG>ACG	p.K84T	MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Missense_Mutation_p.K84T|MTUS1_uc010lsz.2_Missense_Mutation_p.K84T	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	84						Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		ACTAGAAGACTTTTCATGACC	0.383													47	48					0	0	1	0	0	
PSD3	23362	broad.mit.edu	37	8	18656857	18656857	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:18656857A>G	uc003wza.2	-	8	2133	c.2030T>C	c.(2029-2031)GTC>GCC	p.V677A	PSD3_uc003wyy.2_Missense_Mutation_p.V143A|PSD3_uc003wyz.2_5'UTR	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	677	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		AAGGCAATGGACTCCATCTAA	0.383													23	21					0	0	1	0	0	
SH2D4A	63898	broad.mit.edu	37	8	19218776	19218776	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:19218776G>A	uc003wzb.2	+	6	993	c.657G>A	c.(655-657)ACG>ACA	p.T219T	SH2D4A_uc011kym.1_Silent_p.T174T|SH2D4A_uc003wzc.2_Silent_p.T219T	NM_022071	NP_071354	Q9H788	SH24A_HUMAN	SH2 domain containing 4A	219						cytoplasm|nucleus	protein binding				0				Colorectal(111;0.0732)		AAGAGAGAACGAAGCAGATTT	0.348													23	17					0	0	1	0	0	
LPL	4023	broad.mit.edu	37	8	19811702	19811702	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:19811702T>G	uc003wzk.3	+	5	983	c.613T>G	c.(613-615)TTT>GTT	p.F205V		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor	205					fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	TGATGCAGATTTTGTAGACGT	0.483													52	43					0	0	1	0	0	
LPL	4023	broad.mit.edu	37	8	19813404	19813404	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:19813404C>T	uc003wzk.3	+	6	1198	c.828C>T	c.(826-828)ATC>ATT	p.I276I		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor	276					fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	ATCTCTTCATCGACTCTCTGT	0.463													29	25					0	0	1	0	0	
XPO7	23039	broad.mit.edu	37	8	21833868	21833868	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:21833868C>T	uc003xaa.3	+	7	701	c.599C>T	c.(598-600)GCT>GTT	p.A200V	XPO7_uc010lti.2_Missense_Mutation_p.A209V|XPO7_uc010ltj.1_RNA|XPO7_uc010ltk.2_Missense_Mutation_p.A201V	NM_015024	NP_055839	Q9UIA9	XPO7_HUMAN	exportin 7 isoform b	200					mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			ovary(1)|kidney(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		TTTTTACAGGCTTCAGGAAAG	0.438													66	80					0	0	1	0	0	
XPO7	23039	broad.mit.edu	37	8	21848324	21848324	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:21848324C>T	uc003xaa.3	+	18	2037	c.1935C>T	c.(1933-1935)AGC>AGT	p.S645S	XPO7_uc010lti.2_Silent_p.S654S|XPO7_uc010ltk.2_Silent_p.S646S	NM_015024	NP_055839	Q9UIA9	XPO7_HUMAN	exportin 7 isoform b	645					mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			ovary(1)|kidney(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		TTCAATAGAGCGAGCACTTTT	0.428													45	45					0	0	1	0	0	
LGI3	203190	broad.mit.edu	37	8	22006386	22006386	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:22006386T>C	uc003xav.2	-	8	1223	c.934A>G	c.(934-936)ACC>GCC	p.T312A	LGI3_uc010ltu.2_Missense_Mutation_p.T288A	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	312					exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		AAGCGCGTGGTGTTGGGATCC	0.597													12	12					0	0	1	0	0	
PIWIL2	55124	broad.mit.edu	37	8	22172631	22172631	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:22172631T>C	uc003xbn.2	+	18	2329	c.2181T>C	c.(2179-2181)GGT>GGC	p.G727G	PIWIL2_uc011kzf.1_Silent_p.G727G|PIWIL2_uc010ltv.2_Silent_p.G727G	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	727	Piwi.				DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		AATTGGGTGGTGAGCTCTGGG	0.463													31	25					0	0	1	0	0	
ADAMDEC1	27299	broad.mit.edu	37	8	24254940	24254940	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:24254940C>T	uc003xdz.2	+	6	818	c.598C>T	c.(598-600)CGA>TGA	p.R200*	ADAMDEC1_uc010lub.2_Nonsense_Mutation_p.R121*|ADAMDEC1_uc011lab.1_Nonsense_Mutation_p.R121*	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	200					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		AGGCCCAATTCGAATCTCTAG	0.433													81	70					0	0	1	0	0	
DOCK5	80005	broad.mit.edu	37	8	25227129	25227129	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:25227129G>A	uc003xeg.2	+	34	3633	c.3496G>A	c.(3496-3498)GAA>AAA	p.E1166K	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_Missense_Mutation_p.E880K|PPP2R2A_uc003xek.2_5'Flank|DOCK5_uc003xei.2_Missense_Mutation_p.E736K|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	1166	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		CAGAGGAGACGAACAATACAA	0.428													7	5					0	0	1	0	0	
KCTD9	54793	broad.mit.edu	37	8	25296817	25296817	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:25296817T>C	uc003xeo.2	-	6	635	c.477A>G	c.(475-477)GTA>GTG	p.V159V	PPP2R2A_uc003xek.2_Intron	NM_017634	NP_060104	Q7L273	KCTD9_HUMAN	potassium channel tetramerisation domain	159	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		all_cancers(63;0.0164)|Ovarian(32;0.000878)|all_epithelial(46;0.00542)|Breast(100;0.0164)|Hepatocellular(4;0.114)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Epithelial(17;2.39e-12)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0438)		TGCCATCATTTACAATGAGCT	0.333													12	14					0	0	1	0	0	
PTK2B	2185	broad.mit.edu	37	8	27300491	27300491	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:27300491C>T	uc003xfn.1	+	27	2947	c.2139C>T	c.(2137-2139)CCC>CCT	p.P713P	PTK2B_uc003xfo.1_Silent_p.P713P|PTK2B_uc003xfp.1_Silent_p.P713P|PTK2B_uc003xfq.1_Silent_p.P713P|PTK2B_uc003xfr.1_Silent_p.P459P	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	713	Pro-rich.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		TCCAGGAACCCCCACCCAAGG	0.542													30	16					0	0	1	0	0	
TEX15	56154	broad.mit.edu	37	8	30699651	30699651	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:30699651G>A	uc003xil.2	-	1	6883	c.6883C>T	c.(6883-6885)CCC>TCC	p.P2295S		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2295										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		GATACTGGGGGCAACATCGTA	0.348													23	17					0	0	1	0	0	
TEX15	56154	broad.mit.edu	37	8	30701056	30701056	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:30701056T>G	uc003xil.2	-	1	5478	c.5478A>C	c.(5476-5478)GAA>GAC	p.E1826D		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1826										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTCTTAAGATTTCCAGGTCTT	0.373													26	39					0	0	1	0	0	
TEX15	56154	broad.mit.edu	37	8	30703661	30703661	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:30703661G>T	uc003xil.2	-	1	2873	c.2873C>A	c.(2872-2874)TCA>TAA	p.S958*		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	958										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTGGGATAATGAAGAGAAACA	0.358													49	55					2.9001e-28	3.52487e-28	1	1	0	
RAB11FIP1	80223	broad.mit.edu	37	8	37734802	37734802	+	Missense_Mutation	SNP	C	A	A	rs143926211		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:37734802C>A	uc003xkm.1	-	2	683	c.639G>T	c.(637-639)AAG>AAT	p.K213N	RAB11FIP1_uc010lvz.1_Missense_Mutation_p.K61N|RAB11FIP1_uc003xkn.1_Missense_Mutation_p.K213N|RAB11FIP1_uc003xkp.1_Missense_Mutation_p.K61N	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	213	Poly-Lys.				protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			TCTTTGATTTCTTTTTCTTGT	0.473													67	72					6.8682e-38	8.49914e-38	1	1	0	
DDHD2	23259	broad.mit.edu	37	8	38090720	38090720	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:38090720G>A	uc003xlb.2	+	2	585	c.208G>A	c.(208-210)GCA>ACA	p.A70T	DDHD2_uc003xla.2_Missense_Mutation_p.A70T|DDHD2_uc003xlc.2_Missense_Mutation_p.A70T|DDHD2_uc011lbl.1_5'UTR	NM_015214	NP_056029	O94830	DDHD2_HUMAN	DDHD domain containing 2 isoform 1	70	WWE.				lipid catabolic process	centrosome	hydrolase activity|metal ion binding			large_intestine(1)|ovary(1)	2	Colorectal(12;0.000442)	all_lung(54;0.0657)|Lung NSC(58;0.175)	BRCA - Breast invasive adenocarcinoma(5;3.76e-25)|COAD - Colon adenocarcinoma(9;0.0977)			GCTGGAAGAGGCATATAGCTC	0.378													33	27					0	0	1	0	0	
ANK1	286	broad.mit.edu	37	8	41550298	41550298	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:41550298G>A	uc003xok.2	-	31	3810	c.3726C>T	c.(3724-3726)TTC>TTT	p.F1242F	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.F558F|ANK1_uc003xoi.2_Silent_p.F1242F|ANK1_uc003xoj.2_Silent_p.F1242F|ANK1_uc003xol.2_Silent_p.F1242F|ANK1_uc003xom.2_Silent_p.F1283F	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1242					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CAAAGATGACGAATTTGGCCA	0.537													97	178					0	0	1	0	0	
MYST3	7994	broad.mit.edu	37	8	41789996	41789996	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:41789996C>T	uc010lxb.2	-	18	6286	c.5742G>A	c.(5740-5742)ATG>ATA	p.M1914I	MYST3_uc010lxc.2_Missense_Mutation_p.M1914I|MYST3_uc003xon.3_Missense_Mutation_p.M1914I	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1914	Required for activation of RUNX1-2.|Met-rich.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			TGTTCATATTCATGGAATTGA	0.502													31	82					0	0	1	0	0	
MYST3	7994	broad.mit.edu	37	8	41794925	41794925	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:41794925G>A	uc010lxb.2	-	17	3745	c.3201C>T	c.(3199-3201)ATC>ATT	p.I1067I	MYST3_uc010lxc.2_Silent_p.I1067I|MYST3_uc003xon.3_Silent_p.I1067I	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1067					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			CTTCTTCATCGATCTCAAACG	0.433													36	79					0	0	1	0	0	
MYST3	7994	broad.mit.edu	37	8	41832248	41832248	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:41832248G>A	uc010lxb.2	-	9	2000	c.1456C>T	c.(1456-1458)CGT>TGT	p.R486C	MYST3_uc010lxc.2_Missense_Mutation_p.R486C|MYST3_uc003xon.3_Missense_Mutation_p.R486C|MYST3_uc010lxd.2_Missense_Mutation_p.R486C	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	486	Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			TGGATATCACGAAATAATTCC	0.393													36	72					0	0	1	0	0	
AP3M2	10947	broad.mit.edu	37	8	42023053	42023053	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:42023053C>T	uc003xop.2	+	7	1069	c.778C>T	c.(778-780)CTG>TTG	p.L260L	AP3M2_uc003xoo.2_Silent_p.L260L|AP3M2_uc010lxe.2_RNA|AP3M2_uc003xoq.1_Silent_p.L145L|AP3M2_uc003xor.1_Silent_p.L260L	NM_001134296	NP_001127768	P53677	AP3M2_HUMAN	adaptor-related protein complex 3, mu 2 subunit	260	MHD.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus					0	all_cancers(6;8.14e-25)|all_epithelial(6;2.41e-27)|all_lung(13;5.09e-13)|Lung NSC(13;8.38e-12)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|Colorectal(10;0.00165)|OV - Ovarian serous cystadenocarcinoma(14;0.00346)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)			CTTCCGCCTGCTGTCTTACCA	0.433													64	129					0	0	1	0	0	
IKBKB	3551	broad.mit.edu	37	8	42129664	42129664	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:42129664G>A	uc003xow.1	+	2	223	c.46G>A	c.(46-48)GAA>AAA	p.E16K	IKBKB_uc003xov.2_Missense_Mutation_p.E16K|IKBKB_uc010lxh.1_Missense_Mutation_p.G5E|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_5'UTR|IKBKB_uc003xox.1_5'UTR|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Intron|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_5'UTR	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	16	Protein kinase.				anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	TGGGGCCTGGGAAATGAAAGA	0.542													37	98					0	0	1	0	0	
CHRNB3	1142	broad.mit.edu	37	8	42587006	42587006	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:42587006A>C	uc003xpi.1	+	5	684	c.556A>C	c.(556-558)ATC>CTC	p.I186L		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	186	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CCTCATTTTGATCAATGAAAA	0.478													16	71					0	0	1	0	0	
CHRNA6	8973	broad.mit.edu	37	8	42612120	42612120	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:42612120G>A	uc003xpj.2	-	4	371	c.325C>T	c.(325-327)CGC>TGC	p.R109C	CHRNA6_uc011lcw.1_Missense_Mutation_p.R94C	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	109	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GCAGGAACGCGAAGAGTCTCA	0.383													50	85					0	0	1	0	0	
CHRNA6	8973	broad.mit.edu	37	8	42620276	42620276	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:42620276G>A	uc003xpj.2	-	2	197	c.151C>T	c.(151-153)CCT>TCT	p.P51S	CHRNA6_uc011lcw.1_Missense_Mutation_p.P51S	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	51	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TTTTCCACAGGCCTGATGAAC	0.537													56	103					0	0	1	0	0	
HOOK3	84376	broad.mit.edu	37	8	42761366	42761366	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:42761366G>A	uc003xpr.2	+	2	350	c.108G>A	c.(106-108)ACG>ACA	p.T36T	HOOK3_uc010lxq.1_Silent_p.T36T	NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	36	Sufficient for interaction with microtubules.				cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			AAGATTTAACGAATGGGGTTG	0.408			T	RET	papillary thyroid								30	60					0	0	1	0	0	
HOOK3	84376	broad.mit.edu	37	8	42828481	42828481	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:42828481A>C	uc003xpr.2	+	12	1414	c.1172A>C	c.(1171-1173)AAA>ACA	p.K391T	HOOK3_uc010lxq.1_Missense_Mutation_p.K391T	NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	391	Potential.				cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			AAAGCAGATAAACTAGATTTT	0.313			T	RET	papillary thyroid								27	49					0	0	1	0	0	
HOOK3	84376	broad.mit.edu	37	8	42865454	42865454	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:42865454A>C	uc003xpr.2	+	19	1987	c.1745A>C	c.(1744-1746)AAA>ACA	p.K582T		NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	582	Potential.|Required for interaction with MSR1.|Required for association with Golgi.				cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			GCAGCCTTAAAAATTGAAGAA	0.209			T	RET	papillary thyroid								7	21					0	0	1	0	0	
POTEA	340441	broad.mit.edu	37	8	43197428	43197428	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:43197428G>T	uc003xpz.1	+	11	1360	c.1317G>T	c.(1315-1317)GAG>GAT	p.E439D	POTEA_uc003xqa.1_Missense_Mutation_p.E393D	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	439										ovary(1)	1						CTAATTATGAGACTTTTACAT	0.358													25	54					7.87624e-14	8.83987e-14	1	1	0	
KIAA0146	23514	broad.mit.edu	37	8	48352951	48352951	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:48352951C>T	uc003xqd.2	+	8	953	c.944C>T	c.(943-945)GCC>GTC	p.A315V	KIAA0146_uc011lcz.1_RNA|KIAA0146_uc011lda.1_Missense_Mutation_p.A4V|KIAA0146_uc011ldb.1_Missense_Mutation_p.A315V|KIAA0146_uc010lxs.2_5'UTR|KIAA0146_uc011ldc.1_Missense_Mutation_p.A245V|KIAA0146_uc011ldd.1_Missense_Mutation_p.A255V|KIAA0146_uc003xqe.2_5'UTR|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Missense_Mutation_p.A4V|KIAA0146_uc010lxt.2_Missense_Mutation_p.A4V	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	315											0		Lung NSC(58;0.175)				ATGCAAGTTGCCATGTGTGAG	0.463													29	69					0	0	1	0	0	
PRKDC	5591	broad.mit.edu	37	8	48769854	48769854	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:48769854G>A	uc003xqi.2	-	50	6529	c.6472C>T	c.(6472-6474)CGC>TGC	p.R2158C	PRKDC_uc003xqj.2_Missense_Mutation_p.R2158C|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2158					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GCGTAAGGGCGAAAGACCTAC	0.413								NHEJ					16	33					0	0	1	0	0	
PRKDC	5591	broad.mit.edu	37	8	48794568	48794568	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:48794568G>T	uc003xqi.2	-	38	4924	c.4867C>A	c.(4867-4869)CTG>ATG	p.L1623M	PRKDC_uc003xqj.2_Missense_Mutation_p.L1623M|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1623					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CAGTGTTGCAGAATTGTAGTC	0.463								NHEJ					29	73					6.38683e-12	7.03806e-12	1	1	0	
PRKDC	5591	broad.mit.edu	37	8	48815210	48815210	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:48815210A>C	uc003xqi.2	-	27	3245	c.3188T>G	c.(3187-3189)CTT>CGT	p.L1063R	PRKDC_uc003xqj.2_Missense_Mutation_p.L1063R|PRKDC_uc011ldh.1_Missense_Mutation_p.L1063R	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	1063					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				AAGGCTATAAAGTCGCTTGAA	0.433								NHEJ					9	26					0	0	1	0	0	
EFCAB1	79645	broad.mit.edu	37	8	49642308	49642308	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:49642308C>A	uc003xqo.2	-	4	602	c.442G>T	c.(442-444)GAT>TAT	p.D148Y	EFCAB1_uc003xqn.3_Intron|EFCAB1_uc011ldj.1_Missense_Mutation_p.D96Y|EFCAB1_uc010lxx.2_RNA|EFCAB1_uc011ldk.1_RNA	NM_024593	NP_078869	Q9HAE3	EFCB1_HUMAN	EF-hand calcium binding domain 1 isoform a	148	EF-hand 3.						calcium ion binding				0		all_epithelial(80;0.0134)|Lung NSC(129;0.0207)|all_lung(136;0.0464)				TCAACCAAATCTTTAATTCCT	0.353													19	40					1.96292e-10	2.12899e-10	1	1	0	
SNAI2	6591	broad.mit.edu	37	8	49832466	49832466	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:49832466C>A	uc003xqp.2	-	2	778	c.614G>T	c.(613-615)AGA>ATA	p.R205I		NM_003068	NP_003059	O43623	SNAI2_HUMAN	snail 2	205	C2H2-type 3.				canonical Wnt receptor signaling pathway|ectoderm and mesoderm interaction|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		all_cancers(86;0.0368)|all_epithelial(80;0.000624)|Lung NSC(129;0.0019)|all_lung(136;0.00502)				CGTGTGAGTTCTAATGTGTCC	0.483													41	77					1.15183e-24	1.38497e-24	1	1	0	
PXDNL	137902	broad.mit.edu	37	8	52252189	52252189	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:52252189C>A	uc003xqu.3	-	21	4242	c.4141G>T	c.(4141-4143)GAG>TAG	p.E1381*	PXDNL_uc003xqt.3_Intron	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1381					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CAAACCTGCTCTCTGAGTGCT	0.388													31	67					9.17885e-22	1.0907e-21	1	1	0	
PCMTD1	115294	broad.mit.edu	37	8	52744080	52744080	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:52744080A>G	uc003xqx.3	-	5	971	c.630T>C	c.(628-630)AAT>AAC	p.N210N	PCMTD1_uc011ldm.1_Silent_p.N80N|PCMTD1_uc003xqw.3_Silent_p.N210N|PCMTD1_uc011ldn.1_Silent_p.N22N|PCMTD1_uc010lya.2_Silent_p.N134N	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	210						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				CAGCAAGGATATTTTTACTTT	0.368													19	51					0	0	1	0	0	
ST18	9705	broad.mit.edu	37	8	53055523	53055523	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:53055523A>C	uc003xqz.2	-	12	2291	c.2135T>G	c.(2134-2136)CTT>CGT	p.L712R	ST18_uc011ldq.1_Missense_Mutation_p.L359R|ST18_uc011ldr.1_Missense_Mutation_p.L677R|ST18_uc011lds.1_Missense_Mutation_p.L617R|ST18_uc003xra.2_Missense_Mutation_p.L712R	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	712						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TCTTGCATGAAGCTTGGGTTT	0.403													8	95					0	0	1	0	0	
FAM150A	389658	broad.mit.edu	37	8	53454968	53454968	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:53454968G>T	uc003xrd.2	-	2	433	c.228C>A	c.(226-228)TTC>TTA	p.F76L	FAM150A_uc011ldt.1_Missense_Mutation_p.F76L	NM_207413	NP_997296	Q6UXT8	F150A_HUMAN	hypothetical protein LOC389658 precursor	76						extracellular region					0		Lung NSC(129;0.0919)|all_epithelial(80;0.125)|all_lung(136;0.17)				AATGCTTTATGAATTTGTCTT	0.299													17	46					1.02788e-11	1.1298e-11	1	1	0	
RB1CC1	9821	broad.mit.edu	37	8	53573751	53573751	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:53573751G>T	uc003xre.3	-	10	2007	c.1449C>A	c.(1447-1449)GTC>GTA	p.V483V	RB1CC1_uc003xrf.3_Silent_p.V483V	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	483					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				CAACAATTTTGACTCTTTCTA	0.393													42	82					3.54561e-26	4.28591e-26	1	1	0	
RB1CC1	9821	broad.mit.edu	37	8	53596199	53596199	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:53596199C>T	uc003xre.3	-	5	837	c.279G>A	c.(277-279)TCG>TCA	p.S93S	RB1CC1_uc003xrf.3_Silent_p.S93S	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	93					autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				CATTTTCTGTCGAAAAGGTAG	0.318													31	34					0	0	1	0	0	
TCEA1	6917	broad.mit.edu	37	8	54899528	54899528	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:54899528T>C	uc003xru.2	-	6	846	c.523_splice	c.e6+1	p.A175_splice	TCEA1_uc003xrv.2_Splice_Site_p.A154_splice|TCEA1_uc011ldw.1_Intron|TCEA1_uc010lyg.2_5'Flank	NM_006756	NP_006747	P23193	TCEA1_HUMAN	transcription elongation factor A 1 isoform 1						positive regulation of viral transcription|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	nucleoplasm	DNA binding|translation elongation factor activity|zinc ion binding				0		Lung NSC(129;0.109)|all_epithelial(80;0.11)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;9.1e-07)|Epithelial(17;9.44e-05)|all cancers(17;0.000699)			ACAAAGGATATCTTCTTCAAT	0.189			T	PLAG1	salivary adenoma								5	8					0	0	1	0	0	
RP1	6101	broad.mit.edu	37	8	55539553	55539553	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:55539553A>C	uc003xsd.1	+	4	3259	c.3111A>C	c.(3109-3111)AAA>AAC	p.K1037N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1037					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATAATACTAAAAGTCATATAG	0.388													70	132					0	0	1	0	0	
RP1	6101	broad.mit.edu	37	8	55540960	55540960	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:55540960G>A	uc003xsd.1	+	4	4666	c.4518G>A	c.(4516-4518)TTG>TTA	p.L1506L	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1506					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTTTAGAATTGATAGACATCT	0.343													8	76					0	0	1	0	0	
RP1	6101	broad.mit.edu	37	8	55542456	55542456	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:55542456G>A	uc003xsd.1	+	4	6162	c.6014G>A	c.(6013-6015)AGA>AAA	p.R2005K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	2005					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGTAAAAGAAGAAAACAAAAA	0.294													26	44					0	0	1	0	0	
CYP7A1	1581	broad.mit.edu	37	8	59409434	59409434	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:59409434C>T	uc003xtm.3	-	3	700	c.637G>A	c.(637-639)GAC>AAC	p.D213N		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	213					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				AAGACTTTGTCGAATTGCTTG	0.478									Neonatal_Giant_Cell_Hepatitis				39	73					0	0	1	0	0	
SDCBP	6386	broad.mit.edu	37	8	59488523	59488523	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:59488523G>A	uc003xtn.2	+	5	455	c.305G>A	c.(304-306)GGA>GAA	p.G102E	SDCBP_uc003xto.2_Missense_Mutation_p.G101E|SDCBP_uc003xtr.2_Missense_Mutation_p.G101E|SDCBP_uc003xtp.2_Missense_Mutation_p.G96E|SDCBP_uc003xtq.2_Missense_Mutation_p.G102E|SDCBP_uc003xts.2_Missense_Mutation_p.G108E|SDCBP_uc011led.1_Intron	NM_005625	NP_005616	O00560	SDCB1_HUMAN	syntenin isoform 1	102					actin cytoskeleton organization|axon guidance|positive regulation of phosphorylation|protein targeting to membrane|substrate-dependent cell migration, cell extension|synaptic transmission	cytoskeleton|cytosol|endoplasmic reticulum membrane|focal adhesion|interleukin-5 receptor complex|melanosome|nucleus	cytoskeletal adaptor activity|frizzled binding|interleukin-5 receptor binding|protein heterodimerization activity|protein N-terminus binding|syndecan binding				0		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				AATGATGTTGGAATTCGTAGA	0.363													50	96					0	0	1	0	0	
CA8	767	broad.mit.edu	37	8	61121466	61121466	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:61121466G>A	uc003xtz.1	-	8	999	c.751C>T	c.(751-753)CGA>TGA	p.R251*	CA8_uc003xua.1_Nonsense_Mutation_p.R251*	NM_004056	NP_004047	P35219	CAH8_HUMAN	carbonic anhydrase VIII	251					one-carbon metabolic process		carbonate dehydratase activity|zinc ion binding				0		all_cancers(86;0.172)|all_epithelial(80;0.0383)|all_lung(136;0.0413)|Lung NSC(129;0.0474)				CTCAGCCTTCGAAATTCTTCT	0.388													18	47					0	0	1	0	0	
CHD7	55636	broad.mit.edu	37	8	61693639	61693639	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:61693639G>A	uc003xue.2	+	3	2223	c.1746G>A	c.(1744-1746)AAG>AAA	p.K582K		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	582					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity	p.556_871dup(1)		ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AGCTAGTGAAGAGTGATGATT	0.448													5	11					0	0	1	0	0	
CHD7	55636	broad.mit.edu	37	8	61769092	61769092	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:61769092G>A	uc003xue.2	+	34	7730	c.7253G>A	c.(7252-7254)CGA>CAA	p.R2418Q		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2418	Potential.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GCCAAGAGGCGAAATCTCATG	0.483													13	29					0	0	1	0	0	
ASPH	444	broad.mit.edu	37	8	62563669	62563669	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:62563669C>T	uc003xuj.2	-	5	699	c.430G>A	c.(430-432)GAA>AAA	p.E144K	ASPH_uc011leg.1_Missense_Mutation_p.E115K|ASPH_uc003xuo.2_Missense_Mutation_p.E144K|ASPH_uc011leh.1_Missense_Mutation_p.E130K|ASPH_uc003xul.2_Missense_Mutation_p.E130K|ASPH_uc011lei.1_Missense_Mutation_p.E130K|ASPH_uc011lej.1_Missense_Mutation_p.E130K|ASPH_uc003xun.2_Missense_Mutation_p.E144K|ASPH_uc011lek.1_Missense_Mutation_p.E144K|ASPH_uc003xum.2_Missense_Mutation_p.E144K	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	144	Glu-rich.|Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	GCTTCATCTTCGATATTCTGG	0.348													27	45					0	0	1	0	0	
ARMC1	55156	broad.mit.edu	37	8	66539626	66539626	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:66539626G>T	uc003xvl.2	-	2	243	c.8C>A	c.(7-9)TCT>TAT	p.S3Y	ARMC1_uc011leo.1_5'UTR	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	3					metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			GGAAGTGGAAGAATTCATCTT	0.418													34	66					1.22384e-17	1.42067e-17	1	1	0	
TRIM55	84675	broad.mit.edu	37	8	67047359	67047359	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:67047359C>T	uc003xvv.2	+	3	702	c.476C>T	c.(475-477)GCT>GTT	p.A159V	TRIM55_uc003xvu.2_Missense_Mutation_p.A159V|TRIM55_uc003xvw.2_Missense_Mutation_p.A159V|TRIM55_uc003xvx.2_Missense_Mutation_p.A159V	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	159						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			TGCCAGGTGGCTCCCCTCACT	0.572													40	83					0	0	1	0	0	
RRS1	23212	broad.mit.edu	37	8	67341435	67341435	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:67341435C>T	uc003xwa.2	+	1	173	c.69C>T	c.(67-69)CGC>CGT	p.R23R		NM_015169	NP_055984	Q15050	RRS1_HUMAN	homolog of yeast ribosome biogenesis regulatory	23					mitotic metaphase plate congression|ribosome biogenesis	condensed nuclear chromosome|nucleolus					0		Lung NSC(129;0.197)	Epithelial(68;0.0391)|all cancers(69;0.0898)|BRCA - Breast invasive adenocarcinoma(89;0.111)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			AGTTGCAACGCATCACGGTGC	0.677											OREG0018806	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	20					0	0	1	0	0	
VCPIP1	80124	broad.mit.edu	37	8	67578876	67578876	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:67578876A>G	uc003xwn.2	-	1	577	c.318T>C	c.(316-318)GTT>GTC	p.V106V	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	106					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			GTGCCCCCGTAACCCCGAGCA	0.587													5	54					0	0	1	0	0	
C8orf44	56260	broad.mit.edu	37	8	67591956	67591956	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:67591956G>A	uc003xwo.1	+	3	400	c.247G>A	c.(247-249)GTA>ATA	p.V83I	SGK3_uc003xwp.2_5'UTR|C8orf44_uc003xwq.1_Missense_Mutation_p.V83I	NM_019607	NP_062553	Q96CB5	CH044_HUMAN	hypothetical protein LOC56260	83											0	Breast(64;0.186)		Epithelial(68;0.000959)|OV - Ovarian serous cystadenocarcinoma(28;0.00318)|all cancers(69;0.00363)|BRCA - Breast invasive adenocarcinoma(89;0.149)			CATTTTGTAGGTATTAGAATT	0.403													20	37					0	0	1	0	0	
PTTG3P	26255	broad.mit.edu	37	8	67679886	67679886	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:67679886G>A	uc011leu.1	-	1	355	c.355C>T	c.(355-357)CCC>TCC	p.P119S	SGK3_uc003xwp.2_Intron|SGK3_uc003xwr.2_Intron	NR_002734				RecName: Full=Securin-3; AltName: Full=Pituitary tumor transforming gene 3 protein;          Short=hPTTG3; AltName: Full=rcPTTG1;												0						GGATTGAAGGGAAATAATTTT	0.433													36	80					0	0	1	0	0	
COPS5	10987	broad.mit.edu	37	8	67974198	67974198	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:67974198T>C	uc003xxe.2	-	1	365	c.34A>G	c.(34-36)ACC>GCC	p.T12A	CSPP1_uc003xxg.1_5'Flank|CSPP1_uc003xxh.1_5'Flank|CSPP1_uc003xxi.2_5'Flank|CSPP1_uc003xxj.2_5'Flank|COPS5_uc003xxd.2_5'UTR|COPS5_uc003xxf.2_Silent_p.K40K|COPS5_uc010lyv.1_Missense_Mutation_p.T12A	NM_006837	NP_006828	Q92905	CSN5_HUMAN	COP9 signalosome subunit 5	12					cullin deneddylation|transcription from RNA polymerase II promoter	eukaryotic translation initiation factor 3 complex|signalosome	metal ion binding|metallopeptidase activity|protein binding|transcription coactivator activity|translation initiation factor activity			ovary(1)|skin(1)	2	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00389)|OV - Ovarian serous cystadenocarcinoma(28;0.00691)|all cancers(69;0.0205)|BRCA - Breast invasive adenocarcinoma(89;0.153)			AGTTCCCAGGTTTTCTGGGCC	0.542													34	61					0	0	1	0	0	
CSPP1	79848	broad.mit.edu	37	8	68007713	68007713	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:68007713A>C	uc003xxi.2	+	8	832	c.801A>C	c.(799-801)GAA>GAC	p.E267D	CSPP1_uc003xxg.1_Missense_Mutation_p.E259D|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Missense_Mutation_p.E232D|CSPP1_uc003xxk.2_5'UTR	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	267	Potential.					centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			TAGATGATGAAATCGAATTAA	0.393													40	51					0	0	1	0	0	
CSPP1	79848	broad.mit.edu	37	8	68030586	68030586	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:68030586G>A	uc003xxi.2	+	14	1721	c.1690G>A	c.(1690-1692)GAT>AAT	p.D564N	CSPP1_uc003xxg.1_Missense_Mutation_p.D556N|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Missense_Mutation_p.D529N|CSPP1_uc003xxk.2_Missense_Mutation_p.D235N	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	564						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			GAATACTTTCGATCCCAGTCT	0.393													49	99					0	0	1	0	0	
ARFGEF1	10565	broad.mit.edu	37	8	68130137	68130137	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:68130137C>T	uc003xxo.1	-	32	4883	c.4493G>A	c.(4492-4494)CGA>CAA	p.R1498Q	ARFGEF1_uc003xxl.1_Missense_Mutation_p.R952Q|ARFGEF1_uc003xxn.1_Missense_Mutation_p.R481Q	NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	1498					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TGTACCAGATCGCGCTAACTG	0.368													32	58					0	0	1	0	0	
ARFGEF1	10565	broad.mit.edu	37	8	68208748	68208748	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:68208748T>G	uc003xxo.1	-	5	947	c.557A>C	c.(556-558)AAA>ACA	p.K186T		NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	186					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			GATGAGATTTTTGCTTGCTAA	0.373													34	50					0	0	1	0	0	
PREX2	80243	broad.mit.edu	37	8	68992692	68992692	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:68992692G>A	uc003xxv.1	+	16	1684	c.1657G>A	c.(1657-1659)GAA>AAA	p.E553K	PREX2_uc003xxu.1_Missense_Mutation_p.E553K|PREX2_uc011lez.1_Missense_Mutation_p.E488K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	553	DEP 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TGAAAAAAGCGAATTCAAAGA	0.323													26	50					0	0	1	0	0	
PREX2	80243	broad.mit.edu	37	8	69136820	69136820	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:69136820G>T	uc003xxv.1	+	39	4761	c.4734G>T	c.(4732-4734)AAG>AAT	p.K1578N		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1578					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						ACACAGCGAAGAATTTGGGAG	0.463													22	50					6.44725e-10	6.96688e-10	1	1	0	
C8orf34	116328	broad.mit.edu	37	8	69633596	69633596	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:69633596A>G	uc010lyz.2	+	10	1119	c.1070A>G	c.(1069-1071)GAT>GGT	p.D357G	C8orf34_uc003xyb.2_Missense_Mutation_p.D332G	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	357					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			ataaaaataGATTCCTTGCCT	0.299													15	29					0	0	1	0	0	
SLCO5A1	81796	broad.mit.edu	37	8	70585235	70585235	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:70585235C>T	uc003xyl.2	-	10	3123	c.2416G>A	c.(2416-2418)GAA>AAA	p.E806K	SLCO5A1_uc010lzb.2_Missense_Mutation_p.E751K|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_3'UTR	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	806	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			CCAGTCTCTTCGTGGAATTCT	0.587													31	60					0	0	1	0	0	
NCOA2	10499	broad.mit.edu	37	8	71033568	71033568	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:71033568T>C	uc003xyn.1	-	22	4514	c.4352A>G	c.(4351-4353)GAT>GGT	p.D1451G	NCOA2_uc011lfb.1_Missense_Mutation_p.D539G	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	1451					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			CTTAATCATATCCATTCCAGG	0.433			T	RUNXBP2	AML								6	16					0	0	1	0	0	
NCOA2	10499	broad.mit.edu	37	8	71068536	71068536	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:71068536T>G	uc003xyn.1	-	11	2226	c.2064A>C	c.(2062-2064)AAA>AAC	p.K688N		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	688					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			TGTGCAAAATTTTATGCTTCT	0.522			T	RUNXBP2	AML								7	85					0	0	1	0	0	
NCOA2	10499	broad.mit.edu	37	8	71075749	71075749	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:71075749T>G	uc003xyn.1	-	8	945	c.783A>C	c.(781-783)AGA>AGC	p.R261S		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	261					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			GAAGAACTGGTCTTTCCTTCA	0.388			T	RUNXBP2	AML								17	36					0	0	1	0	0	
NCOA2	10499	broad.mit.edu	37	8	71082507	71082507	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:71082507T>G	uc003xyn.1	-	6	633	c.471A>C	c.(469-471)AAA>AAC	p.K157N		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	157	PAS.				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			TATATACACTTTTGTTCATCA	0.438			T	RUNXBP2	AML								4	20					0	0	1	0	0	
NCOA2	10499	broad.mit.edu	37	8	71126174	71126174	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:71126174C>A	uc003xyn.1	-	4	385	c.223G>T	c.(223-225)GAA>TAA	p.E75*		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	75	Basic motif.				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			TTCACAGTTTCTTTTAAGATT	0.313			T	RUNXBP2	AML								3	9					0.115264	0.115603	1	1	0	
TRAM1	23471	broad.mit.edu	37	8	71495976	71495976	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:71495976G>T	uc003xyo.1	-	9	969	c.799C>A	c.(799-801)CTT>ATT	p.L267I	TRAM1_uc011lfc.1_Missense_Mutation_p.L236I	NM_014294	NP_055109	Q15629	TRAM1_HUMAN	translocation associated membrane protein 1	267	Helical; (Potential).|TLC.				cotranslational protein targeting to membrane|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity			ovary(1)	1			Epithelial(68;0.00679)|all cancers(69;0.0324)|OV - Ovarian serous cystadenocarcinoma(28;0.0509)			AGTACTGAAAGAATTAAAGTC	0.388													54	87					2.01807e-28	2.45391e-28	1	1	0	
LACTB2	51110	broad.mit.edu	37	8	71553193	71553193	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:71553193G>A	uc011lfd.1	-	5	777	c.685C>T	c.(685-687)CGT>TGT	p.R229C	LACTB2_uc003xyp.2_Missense_Mutation_p.R229C	NM_016027	NP_057111	Q53H82	LACB2_HUMAN	lactamase, beta 2	229							hydrolase activity|metal ion binding			ovary(1)	1	Breast(64;0.0716)		Epithelial(68;0.00319)|all cancers(69;0.0175)|OV - Ovarian serous cystadenocarcinoma(28;0.0628)|BRCA - Breast invasive adenocarcinoma(89;0.166)			AAGTTCTCACGAAATAATGTA	0.294													19	27					0	0	1	0	0	
EYA1	2138	broad.mit.edu	37	8	72246342	72246342	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:72246342G>T	uc003xys.3	-	3	479	c.192C>A	c.(190-192)TTC>TTA	p.F64L	EYA1_uc003xyr.3_Missense_Mutation_p.F64L|EYA1_uc003xyt.3_Missense_Mutation_p.F31L|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Missense_Mutation_p.F64L|EYA1_uc011lfe.1_Missense_Mutation_p.F64L|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	64					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CTGAACCTGAGAAATTGTTTA	0.323													28	51					3.69857e-22	4.4058e-22	1	1	0	
MSC	9242	broad.mit.edu	37	8	72756409	72756409	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:72756409G>A	uc003xyx.1	-	1	323	c.5C>T	c.(4-6)TCC>TTC	p.S2F	uc011lff.1_Intron|uc003xyy.2_RNA	NM_005098	NP_005089	O60682	MUSC_HUMAN	musculin	2					transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Breast(64;0.176)		Epithelial(68;0.137)|BRCA - Breast invasive adenocarcinoma(89;0.203)			CGAGCCCGTGGACATCCCGTT	0.706													21	33					0	0	1	0	0	
TRPA1	8989	broad.mit.edu	37	8	72973946	72973946	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:72973946C>A	uc003xza.2	-	7	1033	c.858G>T	c.(856-858)GAG>GAT	p.E286D		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	286	Cytoplasmic (Potential).|ANK 7.					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	GTTTAACAATCTCAGTGGCTC	0.423													25	71					5.61819e-17	6.48411e-17	1	1	0	
TRPA1	8989	broad.mit.edu	37	8	72983961	72983961	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:72983961C>A	uc003xza.2	-	2	428	c.253G>T	c.(253-255)GAT>TAT	p.D85Y		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	85	Cytoplasmic (Potential).|ANK 1.					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	AAAGAGGAATCTCTGGTGATC	0.353													19	41					9.7654e-05	0.000100048	1	1	0	
LY96	23643	broad.mit.edu	37	8	74922307	74922307	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:74922307G>T	uc003yad.2	+	3	365	c.274G>T	c.(274-276)GAA>TAA	p.E92*		NM_015364	NP_056179	Q9Y6Y9	LY96_HUMAN	MD-2 protein precursor	92					cellular defense response|detection of lipopolysaccharide|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	extracellular space|lipopolysaccharide receptor complex|plasma membrane	coreceptor activity|lipopolysaccharide receptor activity|protein binding				0	Breast(64;0.0311)		Epithelial(68;0.0208)|BRCA - Breast invasive adenocarcinoma(89;0.0499)|all cancers(69;0.0619)			AAAGCGCAAAGAAGTTATTTG	0.343													30	63					3.99451e-17	4.61668e-17	1	1	0	
JPH1	56704	broad.mit.edu	37	8	75233263	75233263	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:75233263G>T	uc003yae.2	-	1	300	c.260C>A	c.(259-261)TCA>TAA	p.S87*	JPH1_uc003yaf.2_Nonsense_Mutation_p.S87*|JPH1_uc003yag.1_Intron	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	87	Gly-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			GAAACCATGTGACCACTCCCC	0.677													17	45					1.15088e-07	1.20949e-07	1	1	0	
ZFHX4	79776	broad.mit.edu	37	8	77617005	77617005	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:77617005C>T	uc003yav.2	+	2	1069	c.682C>T	c.(682-684)CGT>TGT	p.R228C	ZFHX4_uc003yat.1_Missense_Mutation_p.R228C|ZFHX4_uc003yau.1_Missense_Mutation_p.R228C|ZFHX4_uc003yaw.1_Missense_Mutation_p.R228C	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	228						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCACAGTTTCCGTGTCTATGA	0.463										HNSCC(33;0.089)			15	41					0	0	1	0	0	
ZFHX4	79776	broad.mit.edu	37	8	77617895	77617895	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:77617895C>A	uc003yav.2	+	2	1959	c.1572C>A	c.(1570-1572)TCC>TCA	p.S524S	ZFHX4_uc003yat.1_Silent_p.S524S|ZFHX4_uc003yau.1_Silent_p.S524S|ZFHX4_uc003yaw.1_Silent_p.S524S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	524	Poly-Ser.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GTACCTCGTCCTCCTCGGCGA	0.433										HNSCC(33;0.089)			13	32					1.49906e-05	1.54644e-05	1	1	0	
ZFHX4	79776	broad.mit.edu	37	8	77763421	77763421	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:77763421C>T	uc003yav.2	+	10	4516	c.4129C>T	c.(4129-4131)CGG>TGG	p.R1377W	ZFHX4_uc003yau.1_Missense_Mutation_p.R1422W|ZFHX4_uc003yaw.1_Missense_Mutation_p.R1377W	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1377						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TCATGCAATTCGGGCTGCGAC	0.458										HNSCC(33;0.089)			13	25					0	0	1	0	0	
ZFHX4	79776	broad.mit.edu	37	8	77764977	77764977	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:77764977C>T	uc003yav.2	+	10	6072	c.5685C>T	c.(5683-5685)GGC>GGT	p.G1895G	ZFHX4_uc003yau.1_Silent_p.G1940G|ZFHX4_uc003yaw.1_Silent_p.G1895G	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1895						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GTGGTGAAGGCGAAAACACTG	0.378										HNSCC(33;0.089)			19	48					0	0	1	0	0	
ZFHX4	79776	broad.mit.edu	37	8	77766413	77766413	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:77766413C>A	uc003yav.2	+	10	7508	c.7121C>A	c.(7120-7122)TCT>TAT	p.S2374Y	ZFHX4_uc003yau.1_Missense_Mutation_p.S2419Y|ZFHX4_uc003yaw.1_Missense_Mutation_p.S2374Y	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2374	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AGTGACCCCTCTCCCCCTTCT	0.468										HNSCC(33;0.089)			9	18					5.4927e-09	5.87265e-09	1	1	0	
FAM164A	51101	broad.mit.edu	37	8	79629691	79629691	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:79629691T>C	uc003ybd.2	+	9	1043	c.941T>C	c.(940-942)TTT>TCT	p.F314S		NM_016010	NP_057094	Q96GY0	F164A_HUMAN	hypothetical protein LOC51101	314										ovary(1)	1						TGGGCCAAATTTTGCTGTGAA	0.368													45	124					0	0	1	0	0	
STMN2	11075	broad.mit.edu	37	8	80567157	80567157	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:80567157C>T	uc003ybj.2	+	4	391	c.340C>T	c.(340-342)CGA>TGA	p.R114*	STMN2_uc010lzp.2_RNA|STMN2_uc011lfn.1_Intron	NM_007029	NP_008960	Q93045	STMN2_HUMAN	superiorcervical ganglia, neural specific 10	114	Potential.				intracellular signal transduction|negative regulation of microtubule depolymerization|negative regulation of microtubule polymerization|negative regulation of neuron projection development|neuron differentiation|positive regulation of microtubule depolymerization|positive regulation of neuron projection development	axon|growth cone|membrane|membrane fraction|perinuclear region of cytoplasm|soluble fraction	protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(9;8.34e-05)		Epithelial(68;0.0229)|all cancers(69;0.0874)			GGAACACGAGCGAGAAGTCCT	0.448													18	23					0	0	1	0	0	
PAG1	55824	broad.mit.edu	37	8	81888912	81888912	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:81888912G>A	uc003ybz.2	-	9	1877	c.1166C>T	c.(1165-1167)GCG>GTG	p.A389V		NM_018440	NP_060910	Q9NWQ8	PAG1_HUMAN	phosphoprotein associated with glycosphingolipid	389	Cytoplasmic (Potential).				epidermal growth factor receptor signaling pathway|intracellular signal transduction|T cell receptor signaling pathway	integral to membrane|intracellular|membrane raft|plasma membrane	SH2 domain binding|SH3/SH2 adaptor activity				0	Lung NSC(7;5.76e-06)|all_lung(9;2e-05)		BRCA - Breast invasive adenocarcinoma(6;0.0567)|Epithelial(68;0.0634)|all cancers(69;0.197)			AGTCTGTATCGCTTCATAATC	0.512													23	49					0	0	1	0	0	
ZFAND1	79752	broad.mit.edu	37	8	82615252	82615252	+	Silent	SNP	G	A	A	rs142017081	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:82615252G>A	uc003ycj.1	-	7	602	c.588C>T	c.(586-588)GCC>GCT	p.A196A	ZFAND1_uc010lzx.1_Silent_p.A189A|ZFAND1_uc003yck.1_Silent_p.A89A	NM_024699	NP_078975	Q8TCF1	ZFAN1_HUMAN	zinc finger, AN1-type domain 1	196							zinc ion binding			ovary(1)	1						CTAGAGAAGCGGCAAAGTCTA	0.343													7	16					0	0	1	0	0	
SNX16	64089	broad.mit.edu	37	8	82752105	82752105	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:82752105A>C	uc011lft.1	-	3	624	c.117T>G	c.(115-117)TCT>TCG	p.S39S	SNX16_uc003ycn.2_Silent_p.S39S|SNX16_uc003yco.2_Silent_p.S39S	NM_022133	NP_071416	P57768	SNX16_HUMAN	sorting nexin 16 isoform a	39					cell communication|early endosome to late endosome transport|endosome to lysosome transport|protein targeting to lysosome	early endosome membrane|extrinsic to endosome membrane|late endosome membrane|lysosome	identical protein binding|phosphatidylinositol binding			ovary(1)|pancreas(1)	2						GGCCCTTAGAAGAATTTGAGC	0.393													48	99					0	0	1	0	0	
LRRCC1	85444	broad.mit.edu	37	8	86037034	86037034	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:86037034C>T	uc003ycw.2	+	8	1286	c.1132C>T	c.(1132-1134)CGT>TGT	p.R378C	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_Missense_Mutation_p.R79C|LRRCC1_uc003ycx.2_Missense_Mutation_p.R285C|LRRCC1_uc003ycy.2_Missense_Mutation_p.R358C	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	378					cell division|mitosis	centriole|nucleus					0						CAGTTGTAATCGTAAAATGAA	0.289													28	75					0	0	1	0	0	
WWP1	11059	broad.mit.edu	37	8	87393047	87393047	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:87393047A>C	uc003ydt.2	+	4	443	c.163A>C	c.(163-165)AAA>CAA	p.K55Q	WWP1_uc010mai.2_5'UTR	NM_007013	NP_008944	Q9H0M0	WWP1_HUMAN	WW domain containing E3 ubiquitin protein ligase	55	C2.				central nervous system development|entry of virus into host cell|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|signal transduction	cytoplasm|nucleus|plasma membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			lung(1)|liver(1)	2						GAAAACAGCAAAATCCAGTAG	0.348													22	40					0	0	1	0	0	
WWP1	11059	broad.mit.edu	37	8	87410844	87410844	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:87410844G>A	uc003ydt.2	+	7	796	c.516G>A	c.(514-516)GAG>GAA	p.E172E	WWP1_uc010mai.2_Missense_Mutation_p.S10N	NM_007013	NP_008944	Q9H0M0	WWP1_HUMAN	WW domain containing E3 ubiquitin protein ligase	172					central nervous system development|entry of virus into host cell|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|signal transduction	cytoplasm|nucleus|plasma membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			lung(1)|liver(1)	2						AAAATGGAGAGCCTTCAGCAA	0.328													31	70					0	0	1	0	0	
WWP1	11059	broad.mit.edu	37	8	87424021	87424021	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:87424021G>A	uc003ydt.2	+	9	1259	c.979G>A	c.(979-981)GCC>ACC	p.A327T	WWP1_uc010mai.2_Missense_Mutation_p.A103T	NM_007013	NP_008944	Q9H0M0	WWP1_HUMAN	WW domain containing E3 ubiquitin protein ligase	327					central nervous system development|entry of virus into host cell|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|signal transduction	cytoplasm|nucleus|plasma membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			lung(1)|liver(1)	2						TTTTGAAGCAGCCAAATCAAG	0.428													21	65					0	0	1	0	0	
CPNE3	8895	broad.mit.edu	37	8	87541223	87541223	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:87541223G>T	uc003ydv.2	+	4	345	c.183G>T	c.(181-183)AAG>AAT	p.K61N		NM_003909	NP_003900	O75131	CPNE3_HUMAN	copine III	61	C2 1.				lipid metabolic process|vesicle-mediated transport	cytosol	calcium-dependent phospholipid binding|protein serine/threonine kinase activity|transporter activity			ovary(1)|skin(1)	2						AATTTTCCAAGACATTTATTA	0.363													26	76					4.47668e-21	5.30033e-21	1	1	0	
CNGB3	54714	broad.mit.edu	37	8	87641195	87641195	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:87641195G>A	uc003ydx.2	-	12	1478	c.1432C>T	c.(1432-1434)CGA>TGA	p.R478*	CNGB3_uc010maj.2_Nonsense_Mutation_p.R340*	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	478	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GTCCGAACTCGCTTTTGCACA	0.428													66	130					0	0	1	0	0	
CNGB3	54714	broad.mit.edu	37	8	87656903	87656903	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:87656903A>C	uc003ydx.2	-	9	1048	c.1002T>G	c.(1000-1002)TTT>TTG	p.F334L	CNGB3_uc010maj.2_Missense_Mutation_p.F196L	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	334	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TAAATTCAAAAAATGAAGTGT	0.259													15	48					0	0	1	0	0	
CNGB3	54714	broad.mit.edu	37	8	87679359	87679359	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:87679359G>A	uc003ydx.2	-	6	692	c.646C>T	c.(646-648)CGA>TGA	p.R216*	CNGB3_uc010maj.2_Nonsense_Mutation_p.R78*	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	216	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						AGATAGAGTCGATCTGGAAAA	0.453													11	33					0	0	1	0	0	
OSGIN2	734	broad.mit.edu	37	8	90937584	90937584	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:90937584A>G	uc003yeg.2	+	6	1688	c.1342A>G	c.(1342-1344)ACA>GCA	p.T448A	OSGIN2_uc003yeh.2_Missense_Mutation_p.T492A	NM_004337	NP_004328	Q9Y236	OSGI2_HUMAN	oxidative stress induced growth inhibitor family	448					germ cell development|meiosis						0			BRCA - Breast invasive adenocarcinoma(11;0.0344)			GGAAATAGATACATATACCTA	0.418													61	101					0	0	1	0	0	
CALB1	793	broad.mit.edu	37	8	91072475	91072475	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:91072475T>C	uc003yel.1	-	11	894	c.712A>G	c.(712-714)ATA>GTA	p.I238V	CALB1_uc011lge.1_Missense_Mutation_p.I181V	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	238						nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			AAAGCCATTATGTTCTTCTTG	0.398													73	120					0	0	1	0	0	
TMEM67	91147	broad.mit.edu	37	8	94807651	94807651	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:94807651C>T	uc011lgk.1	+	17	1760	c.1689C>T	c.(1687-1689)TTC>TTT	p.F563F	TMEM67_uc010maw.2_Silent_p.F269F|TMEM67_uc003yga.3_Silent_p.F482F|TMEM67_uc011lgl.1_5'UTR	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	563					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			TTGTGAAATTCTTGGTGTACT	0.353													47	88					0	0	1	0	0	
KIAA1429	25962	broad.mit.edu	37	8	95523529	95523529	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:95523529A>G	uc003ygo.1	-	13	3287	c.3274T>C	c.(3274-3276)TCT>CCT	p.S1092P	KIAA1429_uc003ygp.2_Missense_Mutation_p.S1092P|KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1092					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			AACATTAAAGACCAAGTATTA	0.353													17	23					0	0	1	0	0	
DPY19L4	286148	broad.mit.edu	37	8	95800258	95800258	+	Nonsense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:95800258T>G	uc003ygx.2	+	18	2109	c.1985T>G	c.(1984-1986)TTA>TGA	p.L662*		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	662						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					GTTAAAGATTTATTAGACATT	0.284													30	80					0	0	1	0	0	
GDF6	392255	broad.mit.edu	37	8	97172790	97172790	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:97172790C>T	uc003yhp.2	-	1	231	c.131G>A	c.(130-132)CGA>CAA	p.R44Q		NM_001001557	NP_001001557	Q6KF10	GDF6_HUMAN	growth differentiation factor 6 precursor	44					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(1)|breast(1)|pancreas(1)	3	Breast(36;2.67e-05)					CTTGCGGCTTCGCATGCCCTT	0.657													37	78					0	0	1	0	0	
PTDSS1	9791	broad.mit.edu	37	8	97299345	97299345	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:97299345C>T	uc003yht.1	+	4	514	c.412C>T	c.(412-414)CGA>TGA	p.R138*	PTDSS1_uc003yhu.1_Intron	NM_014754	NP_055569	P48651	PTSS1_HUMAN	phosphatidylserine synthase 1	138					phosphatidylserine biosynthetic process	integral to membrane	transferase activity			ovary(1)	1	Breast(36;6.18e-05)				Phosphatidylserine(DB00144)	TCCAAATCTTCGATACGCCAC	0.443													72	127					0	0	1	0	0	
PTDSS1	9791	broad.mit.edu	37	8	97345750	97345750	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:97345750C>T	uc003yht.1	+	13	1480	c.1378C>T	c.(1378-1380)CGG>TGG	p.R460W	PTDSS1_uc003yhu.1_Missense_Mutation_p.R314W	NM_014754	NP_055569	P48651	PTSS1_HUMAN	phosphatidylserine synthase 1	460					phosphatidylserine biosynthetic process	integral to membrane	transferase activity			ovary(1)	1	Breast(36;6.18e-05)				Phosphatidylserine(DB00144)	GAGAAGGAATCGGCATTCCAA	0.488											OREG0018880	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	118					0	0	1	0	0	
POP1	10940	broad.mit.edu	37	8	99139972	99139972	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:99139972A>C	uc003yij.3	+	3	392	c.292A>C	c.(292-294)ATC>CTC	p.I98L	POP1_uc011lgv.1_Missense_Mutation_p.I98L|POP1_uc003yik.2_Missense_Mutation_p.I98L	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	98					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			GTCTCAGGAGATCCCCAAGTA	0.483													30	53					0	0	1	0	0	
NIPAL2	79815	broad.mit.edu	37	8	99248398	99248398	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:99248398C>T	uc003yil.1	-	4	677	c.421G>A	c.(421-423)GCC>ACC	p.A141T	NIPAL2_uc011lgw.1_5'UTR|NIPAL2_uc003yim.1_Missense_Mutation_p.A141T	NM_024759	NP_079035	Q9H841	NPAL2_HUMAN	NIPA-like domain containing 2	141						integral to membrane					0						AAGTCTGAGGCTCTCAAATTG	0.303													17	50					0	0	1	0	0	
VPS13B	157680	broad.mit.edu	37	8	100168882	100168882	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:100168882T>C	uc003yiv.2	+	15	2230	c.2119T>C	c.(2119-2121)TAT>CAT	p.Y707H	VPS13B_uc003yiw.2_Missense_Mutation_p.Y707H|VPS13B_uc003yit.2_Missense_Mutation_p.Y707H|VPS13B_uc003yiu.1_Missense_Mutation_p.Y707H|VPS13B_uc003yix.1_Missense_Mutation_p.Y178H	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	707					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AGTGCCAATGTATGCTGAACA	0.388													55	100					0	0	1	0	0	
VPS13B	157680	broad.mit.edu	37	8	100493895	100493895	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:100493895T>C	uc003yiv.2	+	25	3846	c.3735T>C	c.(3733-3735)AAT>AAC	p.N1245N	VPS13B_uc003yiw.2_Silent_p.N1245N|VPS13B_uc003yiu.1_Silent_p.N1245N|VPS13B_uc003yix.1_Silent_p.N715N	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1245					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AGAGAGGCAATCTCAACCTAT	0.438													9	170					0	0	1	0	0	
VPS13B	157680	broad.mit.edu	37	8	100568703	100568703	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:100568703C>T	uc003yiv.2	+	31	4957	c.4846C>T	c.(4846-4848)CGA>TGA	p.R1616*	VPS13B_uc003yiw.2_Nonsense_Mutation_p.R1591*	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1616					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AGGAATTCTTCGAGATCCTGG	0.358													12	39					0	0	1	0	0	
RGS22	26166	broad.mit.edu	37	8	101016202	101016202	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:101016202T>G	uc003yjb.1	-	17	2774	c.2579A>C	c.(2578-2580)AAA>ACA	p.K860T	RGS22_uc003yja.1_Missense_Mutation_p.K679T|RGS22_uc003yjc.1_Missense_Mutation_p.K848T|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	860	RGS 1.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			AAACTCCAGTTTGTTGTTAAG	0.353													26	51					0	0	1	0	0	
SPAG1	6674	broad.mit.edu	37	8	101174630	101174630	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:101174630A>C	uc003yjh.1	+	2	208	c.122A>C	c.(121-123)AAA>ACA	p.K41T	SPAG1_uc003yjg.1_Missense_Mutation_p.K41T|SPAG1_uc003yji.1_Missense_Mutation_p.K41T	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	41					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		CATCTGGAAAAAATTCTTTGC	0.299													13	16					0	0	1	0	0	
SPAG1	6674	broad.mit.edu	37	8	101178199	101178199	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:101178199A>C	uc003yjh.1	+	3	384	c.298A>C	c.(298-300)AAG>CAG	p.K100Q	SPAG1_uc003yjg.1_Missense_Mutation_p.K100Q|SPAG1_uc003yji.1_Missense_Mutation_p.K100Q	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	100					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		TGGTGATATAAAGGTATATAG	0.373													16	28					0	0	1	0	0	
SPAG1	6674	broad.mit.edu	37	8	101196205	101196205	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:101196205T>C	uc003yjh.1	+	6	596	c.510T>C	c.(508-510)TGT>TGC	p.C170C	SPAG1_uc003yjg.1_Silent_p.C170C|SPAG1_uc003yji.1_Silent_p.C170C	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	170					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		AGAAGGAATGTTTAAAAATTG	0.274													17	44					0	0	1	0	0	
SPAG1	6674	broad.mit.edu	37	8	101243400	101243400	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:101243400A>C	uc003yjh.1	+	15	1958	c.1872A>C	c.(1870-1872)AAA>AAC	p.K624N	SPAG1_uc003yji.1_Missense_Mutation_p.K624N	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	624	TPR 7.				single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		AAACATTTAAAGCCCTTAAGG	0.313													26	69					0	0	1	0	0	
ANKRD46	157567	broad.mit.edu	37	8	101540171	101540171	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:101540171G>T	uc003yjm.2	-	4	576	c.372C>A	c.(370-372)GTC>GTA	p.V124V	ANKRD46_uc003yjn.1_Silent_p.V124V|ANKRD46_uc003yjo.1_Silent_p.V124V|ANKRD46_uc003yjp.1_Silent_p.V124V	NM_198401	NP_940683	Q86W74	ANR46_HUMAN	ankyrin repeat domain 46	124	ANK 4.					integral to membrane					0	all_cancers(14;5.07e-05)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000353)|all_lung(17;0.000998)		Epithelial(11;2.61e-11)|all cancers(13;5.03e-09)|OV - Ovarian serous cystadenocarcinoma(57;4.49e-06)|STAD - Stomach adenocarcinoma(118;0.0957)			GCAATCGGATGACATCTTTAT	0.378													37	95					2.87052e-16	3.29392e-16	1	1	0	
UBR5	51366	broad.mit.edu	37	8	103357626	103357626	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:103357626C>T	uc003ykr.1	-	8	917	c.884G>A	c.(883-885)CGA>CAA	p.R295Q	UBR5_uc003yks.1_Missense_Mutation_p.R295Q	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	295					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			AAAATTACCTCGAGATGAGCC	0.353													6	8					0	0	1	0	0	
ODF1	4956	broad.mit.edu	37	8	103572953	103572953	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:103572953C>T	uc003ykt.2	+	2	702	c.594C>T	c.(592-594)ATC>ATT	p.I198I		NM_024410	NP_077721	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	198					cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			ovary(2)	2	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			GTGTCAAGATCGAGTCTCCTT	0.338													11	47					0	0	1	0	0	
RIMS2	9699	broad.mit.edu	37	8	104897838	104897838	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:104897838G>A	uc003yls.2	+	2	586	c.345G>A	c.(343-345)CCG>CCA	p.P115P	RIMS2_uc003ylp.2_Silent_p.P337P|RIMS2_uc003ylw.2_Silent_p.P145P|RIMS2_uc003ylq.2_Silent_p.P145P|RIMS2_uc003ylr.2_Silent_p.P145P	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	368					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GAAGTGATCCGAATTTGGCCC	0.468										HNSCC(12;0.0054)			24	32					0	0	1	0	0	
RIMS2	9699	broad.mit.edu	37	8	105105866	105105866	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:105105866A>C	uc003yls.2	+	21	3130	c.2889A>C	c.(2887-2889)AAA>AAC	p.K963N	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Missense_Mutation_p.K1036N|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GAAACAAGAAAATCAGGTAAG	0.373										HNSCC(12;0.0054)			12	45					0	0	1	0	0	
RIMS2	9699	broad.mit.edu	37	8	105261818	105261818	+	Splice_Site	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:105261818T>C	uc003yls.2	+	26	3986	c.3745_splice	c.e26+2	p.A1249_splice	RIMS2_uc003ylp.2_Splice_Site_p.A1231_splice|RIMS2_uc003ylw.2_Splice_Site_p.A1238_splice|RIMS2_uc003ylq.2_Splice_Site_p.A1045_splice|RIMS2_uc003ylr.2_Splice_Site_p.A1070_splice	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2						intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CACTGCCAGGTAAAAACAAAA	0.378										HNSCC(12;0.0054)			26	16					0	0	1	0	0	
RIMS2	9699	broad.mit.edu	37	8	105263353	105263353	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:105263353T>G	uc003yls.2	+	27	4088	c.3847T>G	c.(3847-3849)TTA>GTA	p.L1283V	RIMS2_uc003ylp.2_Missense_Mutation_p.L1265V|RIMS2_uc003ylw.2_Missense_Mutation_p.L1272V|RIMS2_uc003ylq.2_Missense_Mutation_p.L1079V|RIMS2_uc003ylr.2_Missense_Mutation_p.L1104V	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1327	C2 2.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CCAGCAGCTATTATCTTTCGA	0.363										HNSCC(12;0.0054)			11	27					0	0	1	0	0	
LRP12	29967	broad.mit.edu	37	8	105503537	105503537	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:105503537A>C	uc003yma.2	-	7	2039	c.1944T>G	c.(1942-1944)TTT>TTG	p.F648L	LRP12_uc003ymb.2_Missense_Mutation_p.F629L|LRP12_uc003ylz.2_Missense_Mutation_p.F54L	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	648	Cytoplasmic (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			ACTCCACGGAAAACAAACTTC	0.478													33	55					0	0	1	0	0	
ANGPT1	284	broad.mit.edu	37	8	108359229	108359229	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:108359229T>C	uc003ymn.2	-	2	862	c.394A>G	c.(394-396)ACC>GCC	p.T132A	ANGPT1_uc003ymo.2_Missense_Mutation_p.T132A	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	132					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			AGGAGGCTGGTTCCTATCTCC	0.512													34	77					0	0	1	0	0	
ANGPT1	284	broad.mit.edu	37	8	108359247	108359247	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:108359247T>C	uc003ymn.2	-	2	844	c.376A>G	c.(376-378)ACC>GCC	p.T126A	ANGPT1_uc003ymo.2_Missense_Mutation_p.T126A	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	126					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			TCCAGCATGGTAGCCGTGTGG	0.498													35	81					0	0	1	0	0	
ANGPT1	284	broad.mit.edu	37	8	108509744	108509744	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:108509744T>C	uc003ymn.2	-	1	511	c.43A>G	c.(43-45)ACT>GCT	p.T15A	ANGPT1_uc003ymo.2_Missense_Mutation_p.T15A	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	15					activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			CCTATGTGAGTCAGAATGGCA	0.488													18	25					0	0	1	0	0	
NUDCD1	84955	broad.mit.edu	37	8	110255496	110255496	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:110255496A>C	uc003ynb.3	-	10	1605	c.1494T>G	c.(1492-1494)TTT>TTG	p.F498L	NUDCD1_uc003yna.2_Missense_Mutation_p.F469L|NUDCD1_uc010mcl.2_Missense_Mutation_p.F411L	NM_032869	NP_116258	Q96RS6	NUDC1_HUMAN	NudC domain containing 1 isoform 1	498										ovary(1)|breast(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;1.56e-12)			CACAGGCAAAAAATTTTTTGT	0.393													79	138					0	0	1	0	0	
PKHD1L1	93035	broad.mit.edu	37	8	110448648	110448648	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:110448648T>G	uc003yne.2	+	30	3691	c.3587T>G	c.(3586-3588)ATT>AGT	p.I1196S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1196	Extracellular (Potential).|IPT/TIG 5.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGCAATGTGATTGAAGGGGAT	0.358										HNSCC(38;0.096)			13	54					0	0	1	0	0	
PKHD1L1	93035	broad.mit.edu	37	8	110477432	110477432	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:110477432G>A	uc003yne.2	+	49	8475	c.8371G>A	c.(8371-8373)GAA>AAA	p.E2791K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2791	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTTTCGCTGGGAACATGAAAT	0.383										HNSCC(38;0.096)			30	41					0	0	1	0	0	
PKHD1L1	93035	broad.mit.edu	37	8	110534550	110534550	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:110534550A>G	uc003yne.2	+	74	12271	c.12167A>G	c.(12166-12168)GAC>GGC	p.D4056G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	4056	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGCCCAAGTGACTCTGGGTGG	0.348										HNSCC(38;0.096)			23	41					0	0	1	0	0	
SYBU	55638	broad.mit.edu	37	8	110590245	110590245	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:110590245G>A	uc003ynj.3	-	6	899	c.736C>T	c.(736-738)CGT>TGT	p.R246C	SYBU_uc003yni.3_Missense_Mutation_p.R243C|SYBU_uc003ynk.3_Missense_Mutation_p.R127C|SYBU_uc010mco.2_Missense_Mutation_p.R245C|SYBU_uc003ynl.3_Missense_Mutation_p.R245C|SYBU_uc010mcp.2_Missense_Mutation_p.R246C|SYBU_uc010mcq.2_Missense_Mutation_p.R246C|SYBU_uc003yno.3_Missense_Mutation_p.R127C|SYBU_uc010mcr.2_Missense_Mutation_p.R246C|SYBU_uc003ynm.3_Missense_Mutation_p.R245C|SYBU_uc003ynn.3_Missense_Mutation_p.R245C|SYBU_uc010mcs.2_Missense_Mutation_p.R127C|SYBU_uc010mct.2_Missense_Mutation_p.R246C|SYBU_uc010mcu.2_Missense_Mutation_p.R245C|SYBU_uc003ynp.3_Missense_Mutation_p.R178C|SYBU_uc010mcv.2_Missense_Mutation_p.R246C|SYBU_uc003ynh.3_Missense_Mutation_p.R40C|SYBU_uc011lhw.1_Missense_Mutation_p.R116C	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	246	Sufficient for interaction with KIF5B.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						CTTCCAGAACGCCTGAAACAA	0.373													53	132					0	0	1	0	0	
CSMD3	114788	broad.mit.edu	37	8	113516067	113516067	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:113516067G>A	uc003ynu.2	-	30	5194	c.5035C>T	c.(5035-5037)CGG>TGG	p.R1679W	CSMD3_uc003yns.2_Missense_Mutation_p.R951W|CSMD3_uc003ynt.2_Missense_Mutation_p.R1639W|CSMD3_uc011lhx.1_Missense_Mutation_p.R1575W	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1679	Extracellular (Potential).|CUB 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCATCACTCCGAAAAGCCAAA	0.343										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			33	80					0	0	1	0	0	
CSMD3	114788	broad.mit.edu	37	8	113933929	113933929	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:113933929G>A	uc003ynu.2	-	10	1719	c.1560C>T	c.(1558-1560)GGC>GGT	p.G520G	CSMD3_uc003ynt.2_Silent_p.G480G|CSMD3_uc011lhx.1_Silent_p.G416G	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	520	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGCTCTTTGCGCCCTGTAGGA	0.383										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			26	52					0	0	1	0	0	
CSMD3	114788	broad.mit.edu	37	8	114186077	114186077	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:114186077C>T	uc003ynu.2	-	4	742	c.583G>A	c.(583-585)GAC>AAC	p.D195N	CSMD3_uc003ynt.2_Missense_Mutation_p.D155N|CSMD3_uc011lhx.1_Missense_Mutation_p.D195N|CSMD3_uc010mcx.1_Missense_Mutation_p.D195N	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	195	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCCCCGACGTCGAATCTTGTG	0.458										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			46	54					0	0	1	0	0	
TRPS1	7227	broad.mit.edu	37	8	116631976	116631976	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:116631976C>A	uc003ynz.2	-	2	769	c.310G>T	c.(310-312)GAG>TAG	p.E104*	TRPS1_uc011lhy.1_Nonsense_Mutation_p.E108*|TRPS1_uc003yny.2_Nonsense_Mutation_p.E117*|TRPS1_uc010mcy.2_Nonsense_Mutation_p.E104*	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	104					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			TCTGTCACCTCATCATGCGGA	0.502									Langer-Giedion_syndrome				35	70					1.26612e-14	1.43161e-14	1	1	0	
SLC30A8	169026	broad.mit.edu	37	8	118159295	118159295	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:118159295G>A	uc003yoh.2	+	2	404	c.174G>A	c.(172-174)AAG>AAA	p.K58K	SLC30A8_uc010mcz.2_Silent_p.K9K|SLC30A8_uc011lia.1_Silent_p.K9K|SLC30A8_uc003yog.2_Silent_p.K9K	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	58	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			GTGGCTCCAAGCCCACAGAAA	0.512													35	100					0	0	1	0	0	
EXT1	2131	broad.mit.edu	37	8	118834767	118834767	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:118834767A>C	uc003yok.1	-	5	2127	c.1354T>G	c.(1354-1356)TTG>GTG	p.L452V		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	452	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			AGTACGAACAATCCTCCAGGA	0.368			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				33	72					0	0	1	0	0	
EXT1	2131	broad.mit.edu	37	8	118834821	118834821	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:118834821T>G	uc003yok.1	-	5	2073	c.1300A>C	c.(1300-1302)ATA>CTA	p.I434L		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	434	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			TGCTTGAATATTCTGTCCTGA	0.358			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				36	52					0	0	1	0	0	
EXT1	2131	broad.mit.edu	37	8	119123272	119123272	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:119123272T>G	uc003yok.1	-	1	787	c.14A>C	c.(13-15)AAA>ACA	p.K5T		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	5	Cytoplasmic (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			GAAATAGCGTTTTTTGGCCTG	0.493			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				5	16					0	0	1	0	0	
DSCC1	79075	broad.mit.edu	37	8	120865430	120865430	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:120865430C>T	uc003yov.2	-	2	343	c.208G>A	c.(208-210)GAG>AAG	p.E70K		NM_024094	NP_076999	Q9BVC3	DCC1_HUMAN	defective in sister chromatid cohesion 1	70					DNA replication|maintenance of mitotic sister chromatid cohesion|post-translational protein acetylation|regulation of DNA replication	chromatin|chromosome, centromeric region|nucleoplasm	DNA binding|protein binding			pancreas(1)	1	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			ACAGCTTGCTCGTCTTTATCA	0.383													36	40					0	0	1	0	0	
COL14A1	7373	broad.mit.edu	37	8	121210070	121210070	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:121210070G>A	uc003yox.2	+	7	878	c.613G>A	c.(613-615)GAC>AAC	p.D205N	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_Intron	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	205	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GTATAGTGGTGACCCCAGAAT	0.408													19	52					0	0	1	0	0	
COL14A1	7373	broad.mit.edu	37	8	121216025	121216025	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:121216025G>A	uc003yox.2	+	9	1220	c.955G>A	c.(955-957)GAA>AAA	p.E319K	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_5'UTR	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	319	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CAATGTTGCCGAATTCGATCT	0.468													19	29					0	0	1	0	0	
COL14A1	7373	broad.mit.edu	37	8	121296018	121296018	+	Splice_Site	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:121296018G>A	uc003yox.2	+	32	4232	c.3967_splice	c.e32+1	p.N1323_splice	COL14A1_uc003yoz.2_Splice_Site_p.N288_splice	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor						cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ATTTTAGACAGTAAGTATATT	0.353													17	57					0	0	1	0	0	
SNTB1	6641	broad.mit.edu	37	8	121823712	121823712	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:121823712C>T	uc010mdg.2	-	1	598	c.372G>A	c.(370-372)GGG>GGA	p.G124G	SNTB1_uc003ype.2_Silent_p.G124G	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	124	PH 1.|PDZ.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			TGATGCTGATCCCCAGCCCGC	0.637													14	29					0	0	1	0	0	
SNTB1	6641	broad.mit.edu	37	8	121823882	121823882	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:121823882A>G	uc010mdg.2	-	1	428	c.202T>C	c.(202-204)TTC>CTC	p.F68L	SNTB1_uc003ype.2_Missense_Mutation_p.F68L	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	68	PH 1.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			ccccTGCAGAACGAGCCATTG	0.438													7	14					0	0	1	0	0	
ZHX2	22882	broad.mit.edu	37	8	123964589	123964589	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:123964589C>A	uc003ypk.1	+	3	1406	c.839C>A	c.(838-840)TCT>TAT	p.S280Y		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	280	Required for interaction with NFYA.|Required for homodimerization.|Required for repressor activity.|Homeobox 1.					cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			ATGATCAACTCTTTCAACAAG	0.507													46	85					1.76056e-25	2.12345e-25	1	1	0	
DERL1	79139	broad.mit.edu	37	8	124027820	124027820	+	Missense_Mutation	SNP	C	T	T	rs141975370	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:124027820C>T	uc003ypl.2	-	8	909	c.623G>A	c.(622-624)CGC>CAC	p.R208H	DERL1_uc003ypm.2_Missense_Mutation_p.R188H|DERL1_uc011lif.1_Missense_Mutation_p.R108H|DERL1_uc003ypn.2_3'UTR	NM_024295	NP_077271	Q9BUN8	DERL1_HUMAN	Der1-like domain family, member 1 isoform a	208	Cytoplasmic (Potential).				endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|intracellular transport of viral proteins in host cell|retrograde protein transport, ER to cytosol	integral to endoplasmic reticulum membrane	MHC class I protein binding|receptor activity				0	Lung NSC(37;1.06e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			GGGCAGCCAGCGGTACCTGGT	0.562													27	71					0	0	1	0	0	
WDR67	93594	broad.mit.edu	37	8	124096519	124096519	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:124096519A>G	uc003ypp.1	+	4	548	c.458A>G	c.(457-459)GAC>GGC	p.D153G	WDR67_uc011lig.1_Missense_Mutation_p.D153G|WDR67_uc011lih.1_Missense_Mutation_p.D43G|WDR67_uc003ypq.1_RNA|WDR67_uc003ypo.1_Missense_Mutation_p.D153G	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	153	WD 2.					centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CAATTATGGGACTTGGATACC	0.438													52	102					0	0	1	0	0	
FBXO32	114907	broad.mit.edu	37	8	124546990	124546990	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:124546990C>T	uc003yqr.2	-	2	373	c.181G>A	c.(181-183)GCC>ACC	p.A61T	FBXO32_uc003yqq.2_5'Flank|FBXO32_uc010mdk.2_Missense_Mutation_p.A61T	NM_058229	NP_478136	Q969P5	FBX32_HUMAN	F-box only protein 32 isoform 1	61										skin(3)|breast(2)|lung(1)	6	Lung NSC(37;1.13e-13)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CTCTTCTTGGCTGCAACATCA	0.363													30	63					0	0	1	0	0	
FAM91A1	157769	broad.mit.edu	37	8	124811872	124811872	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:124811872G>A	uc003yqv.2	+	17	1734	c.1673G>A	c.(1672-1674)CGA>CAA	p.R558Q	FAM91A1_uc011lik.1_Missense_Mutation_p.R558Q|FAM91A1_uc011lil.1_Missense_Mutation_p.R316Q	NM_144963	NP_659400	Q658Y4	F91A1_HUMAN	hypothetical protein LOC157769	558										ovary(1)|central_nervous_system(1)	2	Lung NSC(37;8.76e-13)|Ovarian(258;0.00744)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00192)			ACAAGACTTCGAAAACTGCCA	0.388													63	117					0	0	1	0	0	
FER1L6	654463	broad.mit.edu	37	8	125113491	125113491	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:125113491C>A	uc003yqw.2	+	38	5243	c.5037C>A	c.(5035-5037)TTC>TTA	p.F1679L	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1679	C2 6.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGAACATCTTCTCTTTAGAGA	0.498													18	47					9.16793e-09	9.77785e-09	1	1	0	
TRMT12	55039	broad.mit.edu	37	8	125464172	125464172	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:125464172T>C	uc003yra.3	+	1	1125	c.1004T>C	c.(1003-1005)ATC>ACC	p.I335T		NM_017956	NP_060426	Q53H54	TYW2_HUMAN	homolog of yeast tRNA methyltransferase 12	335					tRNA processing		methyltransferase activity			upper_aerodigestive_tract(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			ATTTTGCATATCCACCAAAAT	0.493													26	60					0	0	1	0	0	
NSMCE2	286053	broad.mit.edu	37	8	126194403	126194403	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:126194403T>G	uc003yrw.2	+	5	551	c.323T>G	c.(322-324)TTT>TGT	p.F108C	NSMCE2_uc003yrv.2_Missense_Mutation_p.F108C	NM_173685	NP_775956	Q96MF7	NSE2_HUMAN	non-SMC element 2, MMS21 homolog	108				F -> L (in Ref. 1; BAB71338).	DNA recombination|DNA repair	nucleus	ligase activity|zinc ion binding			breast(1)	1	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			GAGAAGAAATTTTTGGCTTTA	0.299													58	89					0	0	1	0	0	
ASAP1	50807	broad.mit.edu	37	8	131073177	131073177	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:131073177G>A	uc003yta.1	-	27	2868	c.2840C>T	c.(2839-2841)GCC>GTC	p.A947V	ASAP1_uc003ysz.1_Missense_Mutation_p.A758V|ASAP1_uc011liw.1_Missense_Mutation_p.A940V	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	947	Pro-rich.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						GGGCTTGGGGGCCAGTTCTGT	0.577													55	112					0	0	1	0	0	
EFR3A	23167	broad.mit.edu	37	8	132989322	132989322	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:132989322C>A	uc003yte.2	+	12	1510	c.1309C>A	c.(1309-1311)CTG>ATG	p.L437M		NM_015137	NP_055952	Q14156	EFR3A_HUMAN	EFR3 homolog A	437						plasma membrane	binding			ovary(3)|breast(1)|central_nervous_system(1)	5	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)|LUAD - Lung adenocarcinoma(14;0.102)			GATAATGTTGCTGAGATCTTT	0.294													21	45					3.7963e-18	4.42695e-18	1	1	0	
TG	7038	broad.mit.edu	37	8	133961170	133961170	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:133961170G>T	uc003ytw.2	+	27	5424	c.5383G>T	c.(5383-5385)GAC>TAC	p.D1795Y	TG_uc010mdw.2_Missense_Mutation_p.D554Y|TG_uc011ljb.1_Missense_Mutation_p.D164Y	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1795	Type IIIB.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GCGTCTTGGAGACCAGGAGTT	0.468													35	71					9.85521e-28	1.19659e-27	1	1	0	
SLA	6503	broad.mit.edu	37	8	134063099	134063099	+	Silent	SNP	C	T	T	rs143198289		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:134063099C>T	uc003ytz.2	-	4	955	c.123G>A	c.(121-123)CCG>CCA	p.P41P	TG_uc003ytw.2_Intron|TG_uc010mdw.2_Intron|TG_uc011ljb.1_Intron|TG_uc011ljc.1_Intron|SLA_uc011lje.1_Silent_p.P58P|SLA_uc011ljf.1_5'UTR|SLA_uc011ljg.1_Silent_p.P58P|SLA_uc010mdy.1_Silent_p.P41P|SLA_uc010mdz.1_Silent_p.P41P|SLA_uc010mea.2_RNA|SLA_uc011ljd.1_Silent_p.P81P	NM_001045556	NP_001039021	Q13239	SLAP1_HUMAN	Src-like-adaptor isoform a	41	SH3.					endosome	SH3/SH2 adaptor activity			lung(1)|liver(1)	2	all_epithelial(106;3.51e-21)|Lung NSC(106;4.24e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0279)|Breast(495;0.037)	BRCA - Breast invasive adenocarcinoma(115;0.000701)			GGCGGAATATCGGGGGGCTGA	0.527													18	44					0	0	1	0	0	
ST3GAL1	6482	broad.mit.edu	37	8	134474127	134474127	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:134474127G>T	uc003yuk.2	-	9	1669	c.840C>A	c.(838-840)GTC>GTA	p.V280V	ST3GAL1_uc003yum.2_Silent_p.V280V	NM_173344	NP_775479	Q11201	SIA4A_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	280	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_epithelial(106;1.53e-23)|Lung NSC(106;3.15e-07)|all_lung(105;1.26e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.00721)			CCTCATCGCAGACATGCATTG	0.597													52	100					1.46357e-32	1.79619e-32	1	1	0	
FAM135B	51059	broad.mit.edu	37	8	139163661	139163661	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:139163661G>A	uc003yuy.2	-	13	3228	c.3057C>T	c.(3055-3057)ACC>ACT	p.T1019T	FAM135B_uc003yux.2_Silent_p.T920T|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.T581T|FAM135B_uc003yvb.2_Silent_p.T581T	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1019										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CCAGAGTAAAGGTCTCTGCAG	0.532										HNSCC(54;0.14)			24	52					0	0	1	0	0	
COL22A1	169044	broad.mit.edu	37	8	139701163	139701163	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:139701163C>A	uc003yvd.2	-	37	3306	c.2859G>T	c.(2857-2859)GAG>GAT	p.E953D	COL22A1_uc011ljo.1_Missense_Mutation_p.E253D	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	953	Pro-rich.|Gly-rich.|Collagen-like 8.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GTCTTACCTTCTCACCACGCT	0.512										HNSCC(7;0.00092)			19	71					2.37509e-13	2.65549e-13	1	1	0	
PTK2	5747	broad.mit.edu	37	8	141749153	141749153	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:141749153G>A	uc003yvu.2	-	21	2019	c.1789C>T	c.(1789-1791)CGA>TGA	p.R597*	PTK2_uc003yvo.2_Nonsense_Mutation_p.R225*|PTK2_uc011ljq.1_Nonsense_Mutation_p.R292*|PTK2_uc003yvp.2_Nonsense_Mutation_p.R265*|PTK2_uc003yvq.2_Nonsense_Mutation_p.R123*|PTK2_uc003yvr.2_Nonsense_Mutation_p.R537*|PTK2_uc003yvs.2_Nonsense_Mutation_p.R597*|PTK2_uc003yvt.2_Nonsense_Mutation_p.R619*|PTK2_uc003yvv.2_Nonsense_Mutation_p.R497*|PTK2_uc011ljr.1_Nonsense_Mutation_p.R597*	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	597	Protein kinase.				axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			GTAAAACGTCGAAAATTGATT	0.284													20	43					0	0	1	0	0	
DENND3	22898	broad.mit.edu	37	8	142154302	142154302	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:142154302G>T	uc003yvy.2	+	5	717	c.439G>T	c.(439-441)GAT>TAT	p.D147Y	DENND3_uc010mep.2_Missense_Mutation_p.D160Y	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	147	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TCATATAAAAGATTTCGCTGC	0.373													33	45					1.56442e-22	1.86546e-22	1	1	0	
DENND3	22898	broad.mit.edu	37	8	142154308	142154308	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:142154308G>A	uc003yvy.2	+	5	723	c.445G>A	c.(445-447)GCT>ACT	p.A149T	DENND3_uc010mep.2_Missense_Mutation_p.A162T	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	149	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			AAAAGATTTCGCTGCGAAGCT	0.368													23	53					0	0	1	0	0	
FLJ43860	389690	broad.mit.edu	37	8	142445254	142445254	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:142445254G>A	uc003ywi.2	-	29	3732	c.3651C>T	c.(3649-3651)AGC>AGT	p.S1217S	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	1217							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			AGTGGCGGGCGCTGAGGCCCC	0.672													14	11					0	0	1	0	0	
BAI1	575	broad.mit.edu	37	8	143614773	143614773	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:143614773C>T	uc003ywm.2	+	24	3699	c.3516C>T	c.(3514-3516)TTC>TTT	p.F1172F		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1172	Helical; Name=7; (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					TCGCTGTCTTCGACTCGCTGG	0.672													8	22					0	0	1	0	0	
GML	2765	broad.mit.edu	37	8	143921918	143921918	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:143921918G>A	uc003yxg.2	+	2	155	c.65G>A	c.(64-66)CGC>CAC	p.R22H		NM_002066	NP_002057	Q99445	GML_HUMAN	glycosylphosphatidylinositol anchored molecule	22					apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|negative regulation of cell proliferation	anchored to membrane|extrinsic to membrane|plasma membrane				central_nervous_system(2)	2	all_cancers(97;4.26e-11)|all_epithelial(106;1.85e-08)|Lung NSC(106;0.000274)|all_lung(105;0.000755)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GCCACCATGCGCGCTCAGTGT	0.577													20	50					0	0	1	0	0	
CYP11B1	1584	broad.mit.edu	37	8	143958486	143958486	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:143958486C>T	uc003yxi.2	-	3	555	c.548G>A	c.(547-549)AGC>AAC	p.S183N	CYP11B1_uc010mex.2_5'Flank|CYP11B1_uc003yxh.2_5'Flank|CYP11B1_uc003yxj.2_Missense_Mutation_p.S183N|CYP11B1_uc010mey.2_Missense_Mutation_p.S254N	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	183					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CAGGGTCAGGCTCCCCCGGGC	0.632									Familial_Hyperaldosteronism_type_I				9	34					0	0	1	0	0	
CYP11B1	1584	broad.mit.edu	37	8	143961148	143961148	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:143961148C>T	uc003yxi.2	-	1	89	c.82G>A	c.(82-84)GCC>ACC	p.A28T	CYP11B1_uc003yxj.2_Missense_Mutation_p.A28T|CYP11B1_uc010mey.2_Missense_Mutation_p.A28T	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	28					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	ACCCGGGCGGCTCTCGTGCCC	0.652									Familial_Hyperaldosteronism_type_I				34	106					0	0	1	0	0	
CYP11B2	1585	broad.mit.edu	37	8	143996630	143996630	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:143996630G>A	uc003yxk.1	-	3	430	c.427C>T	c.(427-429)CGG>TGG	p.R143W		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	143					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GGGTTCAGCCGCAATCGGTTG	0.622									Familial_Hyperaldosteronism_type_I				13	17					0	0	1	0	0	
CYP11B2	1585	broad.mit.edu	37	8	143999256	143999256	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:143999256T>G	uc003yxk.1	-	1	4	c.1A>C	c.(1-3)ATG>CTG	p.M1L		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	1					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	CTGAGTGCCATTCCAATGCTC	0.602									Familial_Hyperaldosteronism_type_I				43	157					0	0	1	0	0	
LY6H	4062	broad.mit.edu	37	8	144240240	144240240	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:144240240C>T	uc011lka.1	-	3	333	c.167G>A	c.(166-168)CGA>CAA	p.R56Q	LY6H_uc011lkb.1_Missense_Mutation_p.R77Q|LY6H_uc003yxt.2_Missense_Mutation_p.R94Q|LY6H_uc011lkc.1_Missense_Mutation_p.R77Q	NM_002347	NP_002338	O94772	LY6H_HUMAN	lymphocyte antigen 6 complex, locus H isoform a	56	UPAR/Ly6.				nervous system development|organ morphogenesis	anchored to membrane|plasma membrane					0	all_cancers(97;6.49e-11)|all_epithelial(106;2.77e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					ATCGGTGATTCGGACACTGGC	0.602													36	75					0	0	1	0	0	
RHPN1	114822	broad.mit.edu	37	8	144461522	144461522	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:144461522G>A	uc003yyb.2	+	8	922	c.789G>A	c.(787-789)GCG>GCA	p.A263A		NM_052924	NP_443156	Q8TCX5	RHPN1_HUMAN	rhophilin 1	263	BRO1.				signal transduction	intracellular				large_intestine(1)	1	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.156)			TCTCCCATGCGCCGAGCCCAG	0.652													11	10					0	0	1	0	0	
C8orf73	642475	broad.mit.edu	37	8	144651955	144651955	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:144651955C>T	uc010mff.2	-	8	1258	c.1214G>A	c.(1213-1215)CGA>CAA	p.R405Q	C8orf73_uc010mfg.1_Silent_p.A417A	NM_001100878	NP_001094348	A6NGR9	CH073_HUMAN	hypothetical protein LOC642475	405	Leu-rich.						binding			ovary(1)	1	all_cancers(97;6.49e-11)|all_epithelial(106;4.73e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.014)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GGTGAGGAGTCGCTCCAGGAT	0.692													7	13					0	0	1	0	0	
PYCRL	65263	broad.mit.edu	37	8	144690248	144690248	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:144690248T>C	uc003yyy.2	-	2	186	c.176A>G	c.(175-177)AAC>AGC	p.N59S	PYCRL_uc011lkm.1_Missense_Mutation_p.N59S|PYCRL_uc011lkn.1_RNA	NM_023078	NP_075566	Q53H96	P5CR3_HUMAN	pyrroline-5-carboxylate reductase-like	47					proline biosynthetic process		pyrroline-5-carboxylate reductase activity				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.17e-38)|Epithelial(56;7.17e-37)|all cancers(56;2.46e-32)|Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)			GTGACATAGGTTCCTGTCTGT	0.512													19	39					0	0	1	0	0	
EPPK1	83481	broad.mit.edu	37	8	144940819	144940819	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:144940819T>C	uc003zaa.1	-	1	6616	c.6603A>G	c.(6601-6603)GAA>GAG	p.E2201E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	2201						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCCGTCCCGTTTCCAGGTCCT	0.592													83	139					0	0	1	0	0	
HEATR7A	727957	broad.mit.edu	37	8	145223230	145223230	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr8:145223230G>A	uc003zbk.3	+	4	292	c.55G>A	c.(55-57)GAT>AAT	p.D19N	HEATR7A_uc003zbg.2_Missense_Mutation_p.D19N|HEATR7A_uc003zbh.3_Missense_Mutation_p.D19N|HEATR7A_uc003zbi.3_Missense_Mutation_p.D19N|HEATR7A_uc011lla.1_Missense_Mutation_p.D19N|HEATR7A_uc010mft.2_Missense_Mutation_p.D19N	NM_032450	NP_115826	Q8NDA8	HTR7A_HUMAN	HEAT repeat containing 7A isoform 1	19	HEAT 1.						binding				0						CGCCATCACCGATAAGGACCC	0.667													8	17					0	0	1	0	0	
WASH5P	375690	broad.mit.edu	37	9	14821	14821	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:14821C>T	uc010mgm.1	-	11	1527	c.1384G>A	c.(1384-1386)GAC>AAC	p.D462N	WASH5P_uc003zfr.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						GATTCCCAGTCGTCCTCGTCC	0.647													5	39					0	0	1	0	0	
C9orf66	157983	broad.mit.edu	37	9	214896	214896	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:214896T>G	uc003zge.3	-	1	998	c.501A>C	c.(499-501)GAA>GAC	p.E167D	DOCK8_uc011lls.1_5'UTR|DOCK8_uc003zgf.2_5'UTR	NM_152569	NP_689782	Q5T8R8	CI066_HUMAN	hypothetical protein LOC157983	167										central_nervous_system(1)	1	all_lung(41;0.218)	all_cancers(5;2.09e-12)|all_epithelial(5;6.16e-09)|all_lung(10;1.15e-08)|Lung NSC(10;1.91e-08)|Acute lymphoblastic leukemia(5;0.00457)|all_hematologic(5;0.0332)|Breast(48;0.0646)|Prostate(43;0.137)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		GCTGGGCATGTTCCGCGGCTA	0.687													6	14					0	0	1	0	0	
DOCK8	81704	broad.mit.edu	37	9	336642	336642	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:336642C>T	uc003zgf.2	+	12	1458	c.1346C>T	c.(1345-1347)GCC>GTC	p.A449V	DOCK8_uc011lls.1_Missense_Mutation_p.A449V|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Missense_Mutation_p.A381V|DOCK8_uc003zgg.2_Missense_Mutation_p.A381V|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	449	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		TCTGAAAGAGCCCTCTCCTTG	0.453													23	33					0	0	1	0	0	
DOCK8	81704	broad.mit.edu	37	9	336644	336644	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:336644C>A	uc003zgf.2	+	12	1460	c.1348C>A	c.(1348-1350)CTC>ATC	p.L450I	DOCK8_uc011lls.1_Missense_Mutation_p.L450I|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Missense_Mutation_p.L382I|DOCK8_uc003zgg.2_Missense_Mutation_p.L382I|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	450	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		TGAAAGAGCCCTCTCCTTGGA	0.453													24	34					6.44725e-10	6.96688e-10	1	1	0	
KANK1	23189	broad.mit.edu	37	9	712098	712098	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:712098G>T	uc003zgl.1	+	7	1981	c.1332G>T	c.(1330-1332)ATG>ATT	p.M444I	KANK1_uc003zgm.2_Missense_Mutation_p.M444I|KANK1_uc003zgn.1_Missense_Mutation_p.M444I|KANK1_uc003zgo.1_Missense_Mutation_p.M444I|KANK1_uc003zgp.1_Missense_Mutation_p.M444I|KANK1_uc003zgq.2_Missense_Mutation_p.M286I|KANK1_uc003zgr.1_Missense_Mutation_p.M286I|KANK1_uc003zgs.1_Missense_Mutation_p.M286I	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	444					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		CAGAGGCCATGCTTGGAGTGA	0.483													19	47					1.56452e-12	1.73502e-12	1	1	0	
DMRT2	10655	broad.mit.edu	37	9	1053757	1053757	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:1053757C>T	uc003zha.2	+	3	761	c.561C>T	c.(559-561)TTC>TTT	p.F187F	DMRT2_uc003zgx.3_5'UTR|DMRT2_uc010mgz.2_5'UTR|DMRT2_uc003zgy.3_Silent_p.F31F|DMRT2_uc003zhb.3_Silent_p.F187F|DMRT2_uc011llt.1_Silent_p.F187F|DMRT2_uc011llu.1_Silent_p.F187F|DMRT2_uc011llv.1_Silent_p.F187F	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	187					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		AGAATAATTTCGAGCGCAAAG	0.448													32	58					0	0	1	0	0	
SMARCA2	6595	broad.mit.edu	37	9	2161877	2161877	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:2161877C>T	uc003zhc.2	+	28	4272	c.4173C>T	c.(4171-4173)ATC>ATT	p.I1391I	SMARCA2_uc003zhd.2_Silent_p.I1391I|SMARCA2_uc010mha.2_Silent_p.I1324I|SMARCA2_uc011llw.1_Silent_p.I95I|SMARCA2_uc003zhf.2_Silent_p.I55I|SMARCA2_uc011llx.1_Silent_p.I55I|SMARCA2_uc003zhe.2_Silent_p.I97I|SMARCA2_uc003zhg.2_Silent_p.I55I|SMARCA2_uc010mhb.2_Silent_p.I79I	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1391					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		ACGCTATCATCGATACTGTGA	0.488													19	34					0	0	1	0	0	
RCL1	10171	broad.mit.edu	37	9	4793106	4793106	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:4793106G>A	uc003zis.2	+	1	273	c.15G>A	c.(13-15)GCG>GCA	p.A5A	RCL1_uc003zit.2_5'UTR|RCL1_uc010mhk.1_5'UTR	NM_005772	NP_005763	Q9Y2P8	RCL1_HUMAN	RNA terminal phosphate cyclase-like 1	5					ribosome biogenesis|RNA processing	nucleolus	RNA-3'-phosphate cyclase activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0206)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0244)		CGACTCAGGCGCACTCCCTCA	0.642													13	15					0	0	1	0	0	
JAK2	3717	broad.mit.edu	37	9	5022092	5022092	+	Silent	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:5022092A>T	uc010mhm.2	+	2	218	c.105A>T	c.(103-105)ATA>ATT	p.I35I	JAK2_uc003ziw.2_Silent_p.I35I	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	35	Interaction with cytokine/interferon/growth hormone receptors (By similarity).				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		TGAAGCAAATAGATCCAGTTC	0.413		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				47	62					0	0	1	0	0	
JAK2	3717	broad.mit.edu	37	9	5054708	5054708	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:5054708T>C	uc010mhm.2	+	6	873	c.760T>C	c.(760-762)TAT>CAT	p.Y254H	JAK2_uc003ziw.2_Missense_Mutation_p.Y254H	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	254	FERM.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		GAAACTTAAGTATCTTATAAA	0.388		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				37	76					0	0	1	0	0	
PDCD1LG2	80380	broad.mit.edu	37	9	5534983	5534983	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:5534983A>G	uc003zjg.3	+	3	567	c.294A>G	c.(292-294)GGA>GGG	p.G98G	C9orf46_uc003zjd.2_Intron|PDCD1LG2_uc011lmc.1_Silent_p.G98G|PDCD1LG2_uc011lmd.1_Silent_p.G98G|PDCD1LG2_uc010mhp.1_Silent_p.G98G|PDCD1LG2_uc010mho.1_Silent_p.G98G	NM_025239	NP_079515	Q9BQ51	PD1L2_HUMAN	programmed cell death 1 ligand 2 precursor	98	Ig-like V-type.|Extracellular (Potential).				immune response|T cell costimulation	endomembrane system|extracellular region|integral to membrane|plasma membrane	receptor activity				0	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000767)|Lung(218;0.112)		GGGACGAAGGACAGTACCAAT	0.517													20	42					0	0	1	0	0	
KIAA1432	57589	broad.mit.edu	37	9	5689981	5689981	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:5689981T>G	uc003zji.2	+	2	131	c.38T>G	c.(37-39)TTT>TGT	p.F13C	KIAA1432_uc003zjh.2_Missense_Mutation_p.F13C|KIAA1432_uc003zjl.3_Missense_Mutation_p.F13C	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	92	WD 1.					integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		TACATCTTGTTTTTTCATATT	0.299													29	66					0	0	1	0	0	
KIAA1432	57589	broad.mit.edu	37	9	5763584	5763584	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:5763584A>G	uc003zji.2	+	18	2413	c.2320A>G	c.(2320-2322)ACA>GCA	p.T774A	KIAA1432_uc003zjh.2_Missense_Mutation_p.T774A|KIAA1432_uc003zjl.3_Missense_Mutation_p.T737A|KIAA1432_uc003zjj.1_Missense_Mutation_p.T316A	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	853						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		GTCCTGTGCCACATTACCTTA	0.537													36	72					0	0	1	0	0	
KIAA1432	57589	broad.mit.edu	37	9	5772625	5772625	+	Silent	SNP	C	T	T	rs138589800		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:5772625C>T	uc003zji.2	+	23	3534	c.3441C>T	c.(3439-3441)GGC>GGT	p.G1147G	KIAA1432_uc003zjl.3_Silent_p.G1110G|ERMP1_uc011lme.1_Intron	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	1226						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		TGGTGGATGGCGACTGGACAA	0.448													46	55					0	0	1	0	0	
KIAA2026	158358	broad.mit.edu	37	9	5920617	5920617	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:5920617A>C	uc003zjq.3	-	8	5595	c.5379T>G	c.(5377-5379)ATT>ATG	p.I1793M	KIAA2026_uc010mht.2_Missense_Mutation_p.I968M	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1793										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		CTGTAGTTGAAATCCCTGGTG	0.408													168	303					0	0	1	0	0	
RANBP6	26953	broad.mit.edu	37	9	6015379	6015379	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:6015379G>A	uc003zjr.2	-	1	240	c.229C>T	c.(229-231)CTT>TTT	p.L77F	RANBP6_uc011lmf.1_Intron|RANBP6_uc003zjs.2_Intron	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	77					protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		GAGGACAAAAGCCGTCGTAGC	0.458													35	79					0	0	1	0	0	
IL33	90865	broad.mit.edu	37	9	6252976	6252976	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:6252976A>C	uc003zjt.2	+	5	511	c.454A>C	c.(454-456)AAA>CAA	p.K152Q	IL33_uc011lmg.1_Intron|IL33_uc011lmh.1_Intron|IL33_uc003zju.1_Missense_Mutation_p.K152Q	NM_033439	NP_254274	O95760	IL33_HUMAN	interleukin 33 precursor	152					positive regulation of chemokine secretion|positive regulation of inflammatory response|positive regulation of macrophage activation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity				0		Acute lymphoblastic leukemia(23;0.158)|Prostate(43;0.167)		GBM - Glioblastoma multiforme(50;0.0161)|Lung(218;0.105)		AGACTTGAAAAAAGATGAAAA	0.249													13	33					0	0	1	0	0	
GLDC	2731	broad.mit.edu	37	9	6553497	6553497	+	Silent	SNP	G	A	A	rs149600380	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:6553497G>A	uc003zkc.2	-	20	2521	c.2328C>T	c.(2326-2328)CTC>CTT	p.L776L		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	776					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	AAAACGGGGCGAGATGTTTCT	0.478													26	62					0	0	1	0	0	
GLDC	2731	broad.mit.edu	37	9	6595109	6595109	+	Missense_Mutation	SNP	G	A	A	rs121964979		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:6595109G>A	uc003zkc.2	-	9	1359	c.1166C>T	c.(1165-1167)GCG>GTG	p.A389V		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	389					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	AGCCATATTCGCCAAGAGGGC	0.433													64	90					0	0	1	0	0	
PTPRD	5789	broad.mit.edu	37	9	8317890	8317890	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:8317890T>C	uc003zkk.2	-	45	6434	c.5723A>G	c.(5722-5724)GAC>GGC	p.D1908G	PTPRD_uc003zkp.2_Missense_Mutation_p.D1502G|PTPRD_uc003zkq.2_Missense_Mutation_p.D1501G|PTPRD_uc003zkr.2_Missense_Mutation_p.D1492G|PTPRD_uc003zks.2_Missense_Mutation_p.D1501G|PTPRD_uc003zkl.2_Missense_Mutation_p.D1899G|PTPRD_uc003zkm.2_Missense_Mutation_p.D1895G|PTPRD_uc003zkn.2_Missense_Mutation_p.D1497G|PTPRD_uc003zko.2_Missense_Mutation_p.D1498G	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1908	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TGCATAGTGGTCAAAGCTGCC	0.478										TSP Lung(15;0.13)			48	129					0	0	1	0	0	
C9orf150	286343	broad.mit.edu	37	9	12821683	12821683	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:12821683A>G	uc003zkw.2	+	2	1314	c.611A>G	c.(610-612)GAC>GGC	p.D204G		NM_203403	NP_981948	Q8IV03	CI150_HUMAN	hypothetical protein LOC286343	207											0				GBM - Glioblastoma multiforme(1;1.64e-13)		CAATTCAGTGACAGCTCCCTC	0.502													76	145					0	0	1	0	0	
MPDZ	8777	broad.mit.edu	37	9	13168391	13168391	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:13168391T>G	uc010mia.1	-	21	3285	c.3228A>C	c.(3226-3228)AGA>AGC	p.R1076S	MPDZ_uc011lmm.1_5'Flank|MPDZ_uc003zkz.3_5'UTR|MPDZ_uc010mhy.2_Missense_Mutation_p.R1076S|MPDZ_uc010mhz.2_Missense_Mutation_p.R1076S|MPDZ_uc011lmn.1_Missense_Mutation_p.R1076S|MPDZ_uc003zlb.3_Missense_Mutation_p.R1076S	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1076	PDZ 6.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		TGAGAGAATGTCTTCTCAACA	0.413													72	195					0	0	1	0	0	
ZDHHC21	340481	broad.mit.edu	37	9	14619044	14619044	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:14619044G>A	uc003zli.2	-	10	1188	c.718C>T	c.(718-720)CGT>TGT	p.R240C	ZDHHC21_uc003zlg.1_Intron	NM_178566	NP_848661	Q8IVQ6	ZDH21_HUMAN	zinc finger, DHHC-type containing 21	240					nitric oxide metabolic process|regulation of nitric-oxide synthase activity	Golgi membrane|integral to membrane	palmitoyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(50;4.31e-06)		ATCTTCCAACGAGTGCCAAAA	0.502													26	40					0	0	1	0	0	
FREM1	158326	broad.mit.edu	37	9	14737488	14737488	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:14737488T>G	uc003zlm.2	-	37	7036	c.6446A>C	c.(6445-6447)AAG>ACG	p.K2149T	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.K685T	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	2149	C-type lectin.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AACACAGCTCTTTCCAAGCTT	0.468													14	14					0	0	1	0	0	
FREM1	158326	broad.mit.edu	37	9	14748531	14748531	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:14748531A>G	uc003zlm.2	-	31	6254	c.5664T>C	c.(5662-5664)GGT>GGC	p.G1888G	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_Intron|FREM1_uc003zll.2_Silent_p.G424G	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1888					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GATGAAAGGAACCAGAAGTGG	0.512													57	182					0	0	1	0	0	
FREM1	158326	broad.mit.edu	37	9	14851533	14851533	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:14851533C>T	uc003zlm.2	-	6	1491	c.901G>A	c.(901-903)GCC>ACC	p.A301T	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	301	CSPG 1.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		ATAAACACGGCCATGAATGCA	0.453													41	101					0	0	1	0	0	
TTC39B	158219	broad.mit.edu	37	9	15192692	15192692	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:15192692C>A	uc003zlr.1	-	9	749	c.628G>T	c.(628-630)GAA>TAA	p.E210*	TTC39B_uc003zlq.1_Nonsense_Mutation_p.E179*|TTC39B_uc011lmp.1_Nonsense_Mutation_p.E111*|TTC39B_uc010mie.1_Nonsense_Mutation_p.E208*|TTC39B_uc011lmq.1_Nonsense_Mutation_p.E210*|TTC39B_uc011lmr.1_Nonsense_Mutation_p.E141*|TTC39B_uc010mif.1_Nonsense_Mutation_p.E210*|TTC39B_uc003zls.1_Nonsense_Mutation_p.E111*|TTC39B_uc010mig.1_Nonsense_Mutation_p.E179*|TTC39B_uc011lms.1_RNA	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B	210							binding			ovary(1)	1						GAAAGACATTCTCTGGGTTGA	0.348													28	52					4.87955e-14	5.4818e-14	1	1	0	
C9orf93	203238	broad.mit.edu	37	9	15571628	15571628	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:15571628G>T	uc003zmd.2	+	3	363	c.48G>T	c.(46-48)AAG>AAT	p.K16N	C9orf93_uc010mih.1_Missense_Mutation_p.K16N|C9orf93_uc003zme.2_5'UTR|C9orf93_uc011lmu.1_Missense_Mutation_p.K16N|C9orf93_uc003zmc.2_Missense_Mutation_p.K16N	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	16											0				GBM - Glioblastoma multiforme(50;4.84e-07)		AAAGGTTGAAGATTGCCTCAT	0.279													26	59					6.32553e-13	7.03772e-13	1	1	0	
C9orf93	203238	broad.mit.edu	37	9	15678796	15678796	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:15678796G>T	uc003zmd.2	+	10	1432	c.1117G>T	c.(1117-1119)GAA>TAA	p.E373*	C9orf93_uc010mih.1_Nonsense_Mutation_p.E373*|C9orf93_uc003zme.2_Nonsense_Mutation_p.E280*|C9orf93_uc011lmu.1_Nonsense_Mutation_p.E373*	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	373	Glu-rich.|Potential.										0				GBM - Glioblastoma multiforme(50;4.84e-07)		GAAACTAAATGAAGACATCGA	0.313													22	37					6.44725e-10	6.96688e-10	1	1	0	
C9orf93	203238	broad.mit.edu	37	9	15678883	15678883	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:15678883G>A	uc003zmd.2	+	10	1519	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K	C9orf93_uc010mih.1_Missense_Mutation_p.E402K|C9orf93_uc003zme.2_Missense_Mutation_p.E309K|C9orf93_uc011lmu.1_Missense_Mutation_p.E402K	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	402											0				GBM - Glioblastoma multiforme(50;4.84e-07)		ATTACAGGAAGAACTAGTAAT	0.338													20	38					0	0	1	0	0	
C9orf93	203238	broad.mit.edu	37	9	15874610	15874610	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:15874610G>T	uc003zmd.2	+	24	3864	c.3549G>T	c.(3547-3549)GAG>GAT	p.E1183D	C9orf93_uc003zme.2_Missense_Mutation_p.E1098D|C9orf93_uc011lmu.1_Missense_Mutation_p.E1191D|C9orf93_uc003zmf.1_Missense_Mutation_p.E491D	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	1183											0				GBM - Glioblastoma multiforme(50;4.84e-07)		TGCACCTGGAGACCTTTGCAA	0.473													46	83					5.48756e-27	6.65592e-27	1	1	0	
CNTLN	54875	broad.mit.edu	37	9	17462966	17462966	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:17462966T>G	uc003zmz.2	+	20	3382	c.3356T>G	c.(3355-3357)TTT>TGT	p.F1119C	CNTLN_uc003zmy.2_Missense_Mutation_p.F1120C|CNTLN_uc010mio.2_Missense_Mutation_p.F799C	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	1120	Potential.					centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		ACTTTGAAATTTGAACTCCTA	0.318													31	54					0	0	1	0	0	
SH3GL2	6456	broad.mit.edu	37	9	17786463	17786463	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:17786463C>T	uc003zna.2	+	4	560	c.272C>T	c.(271-273)GCG>GTG	p.A91V	SH3GL2_uc011lmx.1_Missense_Mutation_p.A56V|SH3GL2_uc011lmy.1_Missense_Mutation_p.A44V	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	91	BAR.|Binds and tubulates liposomes (By similarity).				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		CAGGCAGAGGCGCTGCTGGCA	0.493													41	53					0	0	1	0	0	
HAUS6	54801	broad.mit.edu	37	9	19058433	19058433	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:19058433C>T	uc003znk.2	-	16	2585	c.2332G>A	c.(2332-2334)GAA>AAA	p.E778K	HAUS6_uc011lmz.1_Missense_Mutation_p.E498K|HAUS6_uc003znl.1_Missense_Mutation_p.E642K	NM_017645	NP_060115	Q7Z4H7	HAUS6_HUMAN	HAUS augmin-like complex, subunit 6	778					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|nucleus|spindle				ovary(2)	2						GGGAGAGTTTCGTGTAATATG	0.358													24	34					0	0	1	0	0	
PLIN2	123	broad.mit.edu	37	9	19116286	19116286	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:19116286C>T	uc003zno.2	-	8	1453	c.1274G>A	c.(1273-1275)AGC>AAC	p.S425N	PLIN2_uc011lna.1_Missense_Mutation_p.S397N	NM_001122	NP_001113	Q99541	PLIN2_HUMAN	adipose differentiation-related protein	425					cellular lipid metabolic process	endoplasmic reticulum|extracellular region|lipid particle				ovary(2)	2						CTCCTGGCTGCTCTTGTCCAT	0.498													35	71					0	0	1	0	0	
DENND4C	55667	broad.mit.edu	37	9	19331982	19331982	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:19331982A>C	uc003znq.2	+	13	1585	c.1552A>C	c.(1552-1554)AAA>CAA	p.K518Q	DENND4C_uc011lnc.1_Intron	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	518						integral to membrane				ovary(1)|skin(1)	2						CTAGGAAATAAAAACAGCTCA	0.338													15	43					0	0	1	0	0	
DENND4C	55667	broad.mit.edu	37	9	19371815	19371815	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:19371815A>T	uc003znq.2	+	27	4915	c.4882A>T	c.(4882-4884)ATT>TTT	p.I1628F	DENND4C_uc011lnc.1_Missense_Mutation_p.I958F|DENND4C_uc011lnd.1_Missense_Mutation_p.I916F|DENND4C_uc003znr.2_3'UTR|DENND4C_uc003zns.2_Intron	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	1628						integral to membrane				ovary(1)|skin(1)	2						GAATATTGATATTGGTAAGTT	0.244													32	53					0	0	1	0	0	
KIAA1797	54914	broad.mit.edu	37	9	20720434	20720434	+	Missense_Mutation	SNP	G	A	A	rs143009945		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:20720434G>A	uc003zog.1	+	6	551	c.188G>A	c.(187-189)CGA>CAA	p.R63Q		NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	63						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		GTAGTGGTTCGAACAGCCTGC	0.468													52	127					0	0	1	0	0	
KIAA1797	54914	broad.mit.edu	37	9	20758164	20758164	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:20758164A>C	uc003zog.1	+	8	831	c.468A>C	c.(466-468)ACA>ACC	p.T156T		NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	156						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		AGCAGCTGACAGCGTTTTTCC	0.403													15	21					0	0	1	0	0	
KIAA1797	54914	broad.mit.edu	37	9	20770060	20770060	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:20770060G>A	uc003zog.1	+	10	1092	c.729G>A	c.(727-729)GCG>GCA	p.A243A		NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	243						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		CAACAGAGGCGATGATGTTTA	0.328													56	83					0	0	1	0	0	
KIAA1797	54914	broad.mit.edu	37	9	20907233	20907233	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:20907233A>C	uc003zog.1	+	24	3073	c.2710A>C	c.(2710-2712)ATT>CTT	p.I904L	KIAA1797_uc003zoh.1_Missense_Mutation_p.I340L	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	904						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		TTATCATGCCATTTTACAGGT	0.338													9	153					0	0	1	0	0	
IFNA10	3446	broad.mit.edu	37	9	21206631	21206631	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:21206631C>A	uc003zoq.1	-	1	512	c.466G>T	c.(466-468)GAG>TAG	p.E156*	IFNA14_uc003zoo.1_Intron	NM_002171	NP_002162	P01566	IFN10_HUMAN	interferon, alpha 10 precursor	156					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.17)		TATTTCCTCTCTATTAGATAA	0.448													163	329					3.02213e-73	3.77341e-73	1	1	0	
IFNA16	3449	broad.mit.edu	37	9	21217072	21217072	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:21217072G>T	uc003zor.1	-	1	239	c.233C>A	c.(232-234)TCT>TAT	p.S78Y	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	78					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		ATGGAAGGCAGAGATGGCTTG	0.473													71	146					3.94839e-29	4.8097e-29	1	1	0	
KLHL9	55958	broad.mit.edu	37	9	21333694	21333694	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:21333694G>A	uc003zoy.2	-	1	1736	c.1165C>T	c.(1165-1167)CGC>TGC	p.R389C	KLHL9_uc003zow.2_Intron|KLHL9_uc003zox.2_RNA	NM_018847	NP_061335	Q9P2J3	KLHL9_HUMAN	kelch-like 9	389	Kelch 2.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|midbody				ovary(3)|skin(1)	4				Lung(24;8.52e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.118)		AAGAATGTGCGCTTTTCATTT	0.413													27	51					0	0	1	0	0	
KLHL9	55958	broad.mit.edu	37	9	21334480	21334480	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:21334480C>T	uc003zoy.2	-	1	950	c.379G>A	c.(379-381)GAA>AAA	p.E127K	KLHL9_uc003zow.2_Intron|KLHL9_uc003zox.2_RNA	NM_018847	NP_061335	Q9P2J3	KLHL9_HUMAN	kelch-like 9	127					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|midbody				ovary(3)|skin(1)	4				Lung(24;8.52e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.118)		CTAGCAGCTTCAAGTGTGTCC	0.348													40	98					0	0	1	0	0	
IFNA2	3440	broad.mit.edu	37	9	21385197	21385197	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:21385197C>A	uc003zpb.2	-	1	200	c.132G>T	c.(130-132)ATG>ATT	p.M44I		NM_000605	NP_000596	P01563	IFNA2_HUMAN	interferon, alpha 2 precursor	44					blood coagulation|cell-cell signaling|induction of apoptosis|inflammatory response|negative regulation of interleukin-13 secretion|negative regulation of interleukin-5 secretion|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of transcription, DNA-dependent|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			breast(1)	1				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.0173)	Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	AGATTCTCCTCATCTGTGCCA	0.532													50	137					2.46787e-29	3.00845e-29	1	1	0	
IFT74	80173	broad.mit.edu	37	9	27048155	27048155	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:27048155C>T	uc010mja.2	+	16	1343	c.1216C>T	c.(1216-1218)CGT>TGT	p.R406C	IFT74_uc010mjb.2_Missense_Mutation_p.R406C|IFT74_uc003zqg.3_Missense_Mutation_p.R406C	NM_001099223	NP_001092693	Q96LB3	IFT74_HUMAN	coiled-coil domain containing 2 isoform a	406	Potential.					cytoplasmic membrane-bounded vesicle|intraflagellar transport particle B|microtubule-based flagellum				skin(1)	1		all_neural(11;2.36e-10)		Lung(218;1.4e-05)|LUSC - Lung squamous cell carcinoma(38;0.000114)		GAATATAAATCGTATAGAACA	0.328													23	44					0	0	1	0	0	
TEK	7010	broad.mit.edu	37	9	27202837	27202837	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:27202837A>C	uc003zqi.3	+	13	2371	c.1929A>C	c.(1927-1929)GAA>GAC	p.E643D	TEK_uc011lno.1_Missense_Mutation_p.E600D|TEK_uc011lnp.1_Missense_Mutation_p.E496D|TEK_uc003zqj.1_Missense_Mutation_p.E577D	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	643	Extracellular (Potential).|Fibronectin type-III 3.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		CTCAACCAGAAAACATCAAGA	0.343													39	73					0	0	1	0	0	
LINGO2	158038	broad.mit.edu	37	9	27949023	27949023	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:27949023G>T	uc003zqu.1	-	2	1841	c.1647C>A	c.(1645-1647)TGC>TGA	p.C549*	LINGO2_uc010mjf.1_Nonsense_Mutation_p.C549*|LINGO2_uc003zqv.1_Nonsense_Mutation_p.C549*	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	549	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		GGAATGTGAAGCAGCCCATAG	0.443													29	86					2.24059e-21	2.65706e-21	1	1	0	
LINGO2	158038	broad.mit.edu	37	9	27949138	27949138	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:27949138G>A	uc003zqu.1	-	2	1726	c.1532C>T	c.(1531-1533)GCG>GTG	p.A511V	LINGO2_uc010mjf.1_Missense_Mutation_p.A511V|LINGO2_uc003zqv.1_Missense_Mutation_p.A511V	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	511	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		GGTCCTGTTCGCATAAAGAAA	0.453													48	104					0	0	1	0	0	
TAF1L	138474	broad.mit.edu	37	9	32630386	32630386	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:32630386T>C	uc003zrg.1	-	1	5282	c.5192A>G	c.(5191-5193)AAA>AGA	p.K1731R		NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1731					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGGCTTAGGTTTCCCATCCTC	0.517													73	136					0	0	1	0	0	
TAF1L	138474	broad.mit.edu	37	9	32630947	32630947	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:32630947G>T	uc003zrg.1	-	1	4721	c.4631C>A	c.(4630-4632)TCT>TAT	p.S1544Y	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1544	Bromo 2.				male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AAATGGCCAAGAATCTGGAAC	0.398													35	88					3.11337e-16	3.5706e-16	1	1	0	
TAF1L	138474	broad.mit.edu	37	9	32632206	32632206	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:32632206C>A	uc003zrg.1	-	1	3462	c.3372G>T	c.(3370-3372)GAG>GAT	p.E1124D	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1124					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GCAACATGTTCTCAATGTTCT	0.468													18	53					4.96729e-08	5.24652e-08	1	1	0	
TAF1L	138474	broad.mit.edu	37	9	32633110	32633110	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:32633110C>T	uc003zrg.1	-	1	2558	c.2468G>A	c.(2467-2469)CGA>CAA	p.R823Q	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	823					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TAGAAAGTCTCGAATATGCAT	0.423													57	89					0	0	1	0	0	
NOL6	65083	broad.mit.edu	37	9	33472254	33472254	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:33472254G>A	uc003zsz.2	-	2	312	c.211C>T	c.(211-213)CGC>TGC	p.R71C	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zta.2_Missense_Mutation_p.R71C|NOL6_uc010mjv.2_Missense_Mutation_p.R71C|NOL6_uc011lob.1_Missense_Mutation_p.R71C|NOL6_uc003ztb.1_Missense_Mutation_p.R71C	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	71					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		TCCCGAAGGCGATTAAGCTCC	0.537													32	48					0	0	1	0	0	
PTENP1	11191	broad.mit.edu	37	9	33676442	33676442	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:33676442G>T	uc003zth.3	-	1	977	c.106C>A	c.(106-108)CTT>ATT	p.L36I		NR_023917				SubName: Full=Phosphatase and tensin homolog 2; Flags: Fragment;												0						TCAGCACAAAGATTGTGTATC	0.368													24	66					3.10358e-05	3.19564e-05	1	1	0	
UBAP2	55833	broad.mit.edu	37	9	33953403	33953403	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:33953403T>G	uc003ztq.1	-	12	1049	c.936A>C	c.(934-936)GAA>GAC	p.E312D	UBAP2_uc011loc.1_Missense_Mutation_p.E221D|UBAP2_uc011lod.1_Missense_Mutation_p.E45D|UBAP2_uc011loe.1_Missense_Mutation_p.E67D|UBAP2_uc011lof.1_Missense_Mutation_p.E237D|UBAP2_uc011log.1_Missense_Mutation_p.E258D|UBAP2_uc003ztr.2_Missense_Mutation_p.E184D|SNORD121A_uc010mjz.2_5'Flank	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	312										ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		GTTGGGAAGTTTCAAAGGAGT	0.507													28	39					0	0	1	0	0	
DCAF12	25853	broad.mit.edu	37	9	34107458	34107458	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:34107458C>T	uc003ztt.2	-	3	781	c.439G>A	c.(439-441)GAG>AAG	p.E147K		NM_015397	NP_056212	Q5T6F0	DCA12_HUMAN	DDB1 and CUL4 associated factor 12	147	WD 1.					centrosome|CUL4 RING ubiquitin ligase complex					0						GGATTCAGCTCGATGGCATGG	0.537													31	71					0	0	1	0	0	
NUDT2	318	broad.mit.edu	37	9	34339065	34339065	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:34339065A>C	uc003zub.2	+	4	386	c.28A>C	c.(28-30)ATC>CTC	p.I10L	NUDT2_uc003zuc.2_Missense_Mutation_p.I10L|NUDT2_uc003zud.2_Missense_Mutation_p.I10L	NM_001161	NP_001152	P50583	AP4A_HUMAN	nudix-type motif 2	10	Nudix hydrolase.				induction of apoptosis|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity|bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity|GTP binding				0			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.126)		TGGCTTGATCATCTTCCGAAG	0.433													31	74					0	0	1	0	0	
CCL27	10850	broad.mit.edu	37	9	34662389	34662389	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:34662389G>A	uc003zvm.1	-	2	154	c.95C>T	c.(94-96)GCC>GTC	p.A32V		NM_006664	NP_006655	Q9Y4X3	CCL27_HUMAN	small inducible cytokine A27 precursor	32					cell-cell signaling|chemotaxis|immune response	extracellular space	chemokine activity				0	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		AGTACAGCAGGCAGTGCTGGG	0.572													19	31					0	0	1	0	0	
CCL19	6363	broad.mit.edu	37	9	34689961	34689961	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:34689961C>T	uc003zvn.2	-	3	380	c.242G>A	c.(241-243)CGC>CAC	p.R81H	CCL19_uc010mkf.2_Intron	NM_006274	NP_006265	Q99731	CCL19_HUMAN	small inducible cytokine A19 precursor	81					activation of JUN kinase activity|cell communication|cell maturation|establishment of T cell polarity|immune response|immunological synapse formation|inflammatory response|interleukin-12 secretion|myeloid dendritic cell chemotaxis|negative regulation of leukocyte apoptosis|positive regulation of Cdc42 GTPase activity|positive regulation of dendritic cell antigen processing and presentation|positive regulation of ERK1 and ERK2 cascade|positive regulation of glycoprotein biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of neutrophil chemotaxis|positive regulation of NF-kappaB import into nucleus|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of receptor-mediated endocytosis|positive regulation of T cell proliferation|positive regulation of T-helper 1 cell differentiation|positive regulation of tumor necrosis factor production|regulation of cell projection assembly|release of sequestered calcium ion into cytosol|response to nitric oxide|response to prostaglandin E stimulus|response to virus|T cell costimulation	extracellular space	CCR10 chemokine receptor binding|CCR7 chemokine receptor binding|chemokine activity				0	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		CTGGATGATGCGTTCTACCCA	0.627													20	44					0	0	1	0	0	
C9orf131	138724	broad.mit.edu	37	9	35044662	35044662	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:35044662A>G	uc003zvw.2	+	2	2065	c.2036A>G	c.(2035-2037)AAC>AGC	p.N679S	C9orf131_uc003zvu.2_Missense_Mutation_p.N631S|C9orf131_uc003zvv.2_Missense_Mutation_p.N606S|C9orf131_uc003zvx.2_Missense_Mutation_p.N644S	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	679											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			CAAAGAAAGAACCACTGGGCC	0.517													24	48					0	0	1	0	0	
PIGO	84720	broad.mit.edu	37	9	35094318	35094318	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:35094318C>A	uc003zwd.2	-	3	946	c.550G>T	c.(550-552)GAC>TAC	p.D184Y	PIGO_uc003zwc.1_Missense_Mutation_p.D184Y|PIGO_uc003zwe.2_Missense_Mutation_p.D184Y|PIGO_uc003zwf.2_Missense_Mutation_p.D184Y|PIGO_uc003zwg.1_5'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	184					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GGGAAAAGGTCTTTCCAGGTA	0.493													18	42					3.99206e-14	4.49031e-14	1	1	0	
PIGO	84720	broad.mit.edu	37	9	35095206	35095206	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:35095206C>T	uc003zwd.2	-	2	753	c.357G>A	c.(355-357)CGG>CGA	p.R119R	PIGO_uc003zwc.1_Silent_p.R119R|PIGO_uc003zwe.2_Silent_p.R119R|PIGO_uc003zwf.2_Silent_p.R119R|PIGO_uc003zwg.1_5'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	119					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			ATCGGTAGAGCCGGGCATGGT	0.567													46	87					0	0	1	0	0	
KIAA1539	80256	broad.mit.edu	37	9	35108146	35108146	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:35108146C>T	uc003zwl.2	-	3	451	c.126G>A	c.(124-126)GCG>GCA	p.A42A	KIAA1539_uc003zwm.2_Silent_p.A42A|KIAA1539_uc003zwn.2_5'UTR|KIAA1539_uc003zwo.2_Silent_p.A42A|KIAA1539_uc003zwp.1_Silent_p.A42A|KIAA1539_uc010mkk.1_RNA	NM_025182	NP_079458	Q7L5A3	K1539_HUMAN	hypothetical protein LOC80256	42						nucleus				ovary(2)	2	all_epithelial(49;0.217)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CGGGGGATGTCGCCCCCCCTG	0.657													5	19					0	0	1	0	0	
ATP8B5P	158381	broad.mit.edu	37	9	35449974	35449974	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:35449974C>A	uc010mkn.1	+	10		c.2824C>A			ATP8B5P_uc010mko.2_RNA|ATP8B5P_uc010mkp.2_RNA|ATP8B5P_uc003zwu.2_Intron					Homo sapiens cDNA, FLJ17320.												0						GACTCTACATCTTCATCTATG	0.433													19	68					2.35188e-11	2.57851e-11	1	1	0	
SPAG8	26206	broad.mit.edu	37	9	35808275	35808275	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:35808275G>A	uc003zye.2	-	8	1516	c.1401C>T	c.(1399-1401)TGC>TGT	p.C467C	NPR2_uc003zyd.2_Intron|NPR2_uc010mlb.2_Intron	NM_172312	NP_758516	Q99932	SPAG8_HUMAN	sperm associated antigen 8 isoform 2	Error:Variant_position_missing_in_Q99932_after_alignment						acrosomal vesicle|membrane				ovary(1)	1	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			cattcattccgcaaatgttta	0.328													18	46					0	0	1	0	0	
MELK	9833	broad.mit.edu	37	9	36665442	36665442	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:36665442A>C	uc003zzn.2	+	14	1410	c.1272A>C	c.(1270-1272)GAA>GAC	p.E424D	MELK_uc011lpm.1_Missense_Mutation_p.E293D|MELK_uc011lpn.1_Missense_Mutation_p.E383D|MELK_uc011lpo.1_Missense_Mutation_p.E230D|MELK_uc010mll.2_Missense_Mutation_p.E392D|MELK_uc011lpp.1_Missense_Mutation_p.E376D|MELK_uc010mlm.2_Missense_Mutation_p.E353D|MELK_uc011lpq.1_Missense_Mutation_p.E230D|MELK_uc011lpr.1_Missense_Mutation_p.E353D|MELK_uc011lps.1_Missense_Mutation_p.E344D	NM_014791	NP_055606	Q14680	MELK_HUMAN	maternal embryonic leucine zipper kinase	424						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		Acute lymphoblastic leukemia(2;1.09e-08)|all_hematologic(2;8.15e-06)	STAD - Stomach adenocarcinoma(86;0.228)			AGAACAAAGAAAATGTATATA	0.358													8	89					0	0	1	0	0	
ZCCHC7	84186	broad.mit.edu	37	9	37356833	37356833	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:37356833A>G	uc003zzq.2	+	9	1373	c.1200A>G	c.(1198-1200)GTA>GTG	p.V400V	ZCCHC7_uc011lqh.1_Silent_p.V110V|ZCCHC7_uc011lqi.1_Silent_p.V399V|ZCCHC7_uc010mlt.2_Silent_p.V399V	NM_032226	NP_115602	Q8N3Z6	ZCHC7_HUMAN	zinc finger, CCHC domain containing 7	400							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.0137)		ATTTTTCAGTACTCAAGAAAA	0.393													19	43					0	0	1	0	0	
ZBTB5	9925	broad.mit.edu	37	9	37440877	37440877	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:37440877T>C	uc003zzx.2	-	2	1872	c.1672A>G	c.(1672-1674)ACC>GCC	p.T558A		NM_014872	NP_055687	O15062	ZBTB5_HUMAN	zinc finger and BTB domain containing 5	558					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(29;0.00733)|Lung(182;0.226)		TGAGAACTGGTAGAGTTTTCT	0.517													15	31					0	0	1	0	0	
ZBTB5	9925	broad.mit.edu	37	9	37442225	37442225	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:37442225C>A	uc003zzx.2	-	2	524	c.324G>T	c.(322-324)TTG>TTT	p.L108F		NM_014872	NP_055687	O15062	ZBTB5_HUMAN	zinc finger and BTB domain containing 5	108					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(29;0.00733)|Lung(182;0.226)		CAACAGAGTTCAAATGCAGGT	0.522													50	75					2.43277e-16	2.79395e-16	1	1	0	
POLR1E	64425	broad.mit.edu	37	9	37501836	37501836	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:37501836G>T	uc003zzz.1	+	10	1569	c.1281G>T	c.(1279-1281)GAG>GAT	p.E427D	POLR1E_uc003zzy.1_Missense_Mutation_p.E365D|POLR1E_uc011lqk.1_Missense_Mutation_p.E294D	NM_022490	NP_071935	Q9GZS1	RPA49_HUMAN	RNA polymerase I associated factor 53	427					rRNA transcription	cell junction|cytoplasm|nucleolus	DNA binding|DNA-directed RNA polymerase activity|protein binding				0				GBM - Glioblastoma multiforme(29;0.00851)|Lung(182;0.229)		AGCTCAGTGAGAAAAGGTGAG	0.463													18	34					3.32936e-07	3.48551e-07	1	1	0	
FRMPD1	22844	broad.mit.edu	37	9	37740573	37740573	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:37740573T>G	uc004aag.1	+	15	2092	c.2048T>G	c.(2047-2049)TTT>TGT	p.F683C	FRMPD1_uc004aah.1_Missense_Mutation_p.F683C|FRMPD1_uc011lqm.1_Missense_Mutation_p.F505C|FRMPD1_uc011lqn.1_Missense_Mutation_p.F552C	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	683						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TTGGAGACATTTGGCTGGGCA	0.582													14	44					0	0	1	0	0	
FRMPD1	22844	broad.mit.edu	37	9	37744622	37744622	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:37744622G>A	uc004aag.1	+	16	2637	c.2593G>A	c.(2593-2595)GAC>AAC	p.D865N	FRMPD1_uc004aah.1_Missense_Mutation_p.D865N	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	865						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GAGTGTAGACGACGTGTGCTA	0.577													25	41					0	0	1	0	0	
RG9MTD3	158234	broad.mit.edu	37	9	37769953	37769953	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:37769953G>A	uc004aai.2	+	6	666	c.589G>A	c.(589-591)GAA>AAA	p.E197K	RG9MTD3_uc011lqo.1_Missense_Mutation_p.E146K|RG9MTD3_uc011lqp.1_Missense_Mutation_p.E119K|RG9MTD3_uc011lqq.1_Missense_Mutation_p.E86K|RG9MTD3_uc004aaj.2_RNA|RG9MTD3_uc004aak.2_Missense_Mutation_p.E102K	NM_144964	NP_659401	Q6PF06	RG9D3_HUMAN	RNA (guanine-9-) methyltransferase domain	197							methyltransferase activity				0				GBM - Glioblastoma multiforme(29;0.00817)|Lung(182;0.226)		CATAACAGAAGAAGACTGCTT	0.313													74	127					0	0	1	0	0	
FAM75A3	727830	broad.mit.edu	37	9	40702862	40702862	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:40702862A>G	uc010mmj.2	+	4	548	c.519A>G	c.(517-519)CCA>CCG	p.P173P		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	173	Pro-rich.					integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CACCAGGCCCAATGACCACCT	0.592													41	142					0	0	1	0	0	
FAM75A6	389730	broad.mit.edu	37	9	43627815	43627815	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:43627815C>A	uc011lrb.1	-	4	901	c.872G>T	c.(871-873)TGC>TTC	p.C291F		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	291						integral to membrane					0						GTTAAAGGCGCACGAGGTTCT	0.562													109	220					2.55756e-57	3.18751e-57	1	1	0	
CBWD6	644019	broad.mit.edu	37	9	69205480	69205480	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:69205480C>A	uc004afj.3	-	14	1164	c.1058G>T	c.(1057-1059)AGA>ATA	p.R353I	CBWD6_uc004afk.3_RNA|CBWD6_uc011lrf.1_RNA	NM_001085457	NP_001078926	Q4V339	CBWD6_HUMAN	COBW domain containing 6	353	CobW C-terminal.						ATP binding				0						TCGATTTGTTCTCTCAGTGTC	0.408													56	122					1.08241e-25	1.30648e-25	1	1	0	
PGM5	5239	broad.mit.edu	37	9	71114209	71114209	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:71114209C>T	uc004agr.2	+	10	1775	c.1546C>T	c.(1546-1548)CGG>TGG	p.R516W		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	516					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						CAGTGGTGTGCGGGCCACCCT	0.572													45	65					0	0	1	0	0	
FAM122A	116224	broad.mit.edu	37	9	71395903	71395903	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:71395903G>A	uc004agw.1	+	1	940	c.823G>A	c.(823-825)GCT>ACT	p.A275T	PIP5K1B_uc004agu.2_Intron|PIP5K1B_uc011lrq.1_Intron|PIP5K1B_uc004agv.2_Intron	NM_138333	NP_612206	Q96E09	F122A_HUMAN	hypothetical protein LOC116224	275											0						TGCCCAAGCGGCTTCTCCATT	0.478													117	221					0	0	1	0	0	
APBA1	320	broad.mit.edu	37	9	72131279	72131279	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:72131279G>A	uc004ahh.2	-	2	1124	c.848C>T	c.(847-849)TCG>TTG	p.S283L		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	283	Munc-18-1 binding.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GAGGCTCTGCGAGCTCATGCT	0.532													11	22					0	0	1	0	0	
SMC5	23137	broad.mit.edu	37	9	72893538	72893538	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:72893538C>T	uc004ahr.2	+	5	792	c.675C>T	c.(673-675)CTC>CTT	p.L225L		NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	225	Potential.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						AAAAACAGCTCGAGGTACTTT	0.358													12	45					0	0	1	0	0	
SMC5	23137	broad.mit.edu	37	9	72962937	72962937	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:72962937C>T	uc004ahr.2	+	22	2989	c.2872C>T	c.(2872-2874)CTC>TTC	p.L958F	SMC5_uc011lry.1_Missense_Mutation_p.L103F	NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	958					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						TGAAGTTGATCTCCATACAGA	0.259													12	24					0	0	1	0	0	
SMC5	23137	broad.mit.edu	37	9	72965072	72965072	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:72965072C>T	uc004ahr.2	+	23	3049	c.2932C>T	c.(2932-2934)CGA>TGA	p.R978*	SMC5_uc011lry.1_Nonsense_Mutation_p.R123*	NM_015110	NP_055925	Q8IY18	SMC5_HUMAN	SMC5 protein	978					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			ovary(2)|central_nervous_system(1)	3						AGTCAAATTTCGAAGTAGTAC	0.323													40	52					0	0	1	0	0	
TRPM3	80036	broad.mit.edu	37	9	73442905	73442905	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:73442905A>C	uc004aid.2	-	6	1075	c.831T>G	c.(829-831)AAT>AAG	p.N277K	TRPM3_uc004ahu.2_Missense_Mutation_p.N107K|TRPM3_uc004ahv.2_Missense_Mutation_p.N107K|TRPM3_uc004ahw.2_Missense_Mutation_p.N124K|TRPM3_uc004ahx.2_Missense_Mutation_p.N124K|TRPM3_uc004ahy.2_Missense_Mutation_p.N124K|TRPM3_uc004ahz.2_Missense_Mutation_p.N124K|TRPM3_uc004aia.2_Missense_Mutation_p.N124K|TRPM3_uc004aib.2_Missense_Mutation_p.N124K|TRPM3_uc004aic.2_Missense_Mutation_p.N277K|TRPM3_uc010mor.2_Missense_Mutation_p.N277K|TRPM3_uc004aie.2_Missense_Mutation_p.N124K|TRPM3_uc004aif.2_Missense_Mutation_p.N124K|TRPM3_uc004aig.2_Missense_Mutation_p.N124K|TRPM3_uc004aii.2_Missense_Mutation_p.N279K	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	277	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						TGCTCATGGGATTGGACATGG	0.463													36	96					0	0	1	0	0	
TMEM2	23670	broad.mit.edu	37	9	74349809	74349809	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:74349809C>T	uc011lsa.1	-	6	1846	c.1306G>A	c.(1306-1308)GCA>ACA	p.A436T	TMEM2_uc010mos.2_Intron|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	436						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		TCTGTGCTTGCGACCACAATC	0.438													59	107					0	0	1	0	0	
TMC1	117531	broad.mit.edu	37	9	75420302	75420302	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:75420302T>G	uc004aiz.1	+	18	2111	c.1571T>G	c.(1570-1572)TTT>TGT	p.F524C	TMC1_uc010moz.1_Missense_Mutation_p.F482C|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.F378C|TMC1_uc010mpa.1_Missense_Mutation_p.F378C	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	524	Cytoplasmic (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						CAACAGGAGTTTGTGAGGCTG	0.393													64	155					0	0	1	0	0	
TRPM6	140803	broad.mit.edu	37	9	77362808	77362808	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:77362808C>A	uc004ajl.1	-	31	5318	c.5080G>T	c.(5080-5082)GAC>TAC	p.D1694Y	TRPM6_uc004ajk.1_Missense_Mutation_p.D1689Y|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.D645Y|TRPM6_uc010mpd.1_Missense_Mutation_p.D527Y|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.D650Y	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1694	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						AACTTACTGTCAACTCCAATT	0.284													24	80					3.28513e-13	3.66545e-13	1	1	0	
TRPM6	140803	broad.mit.edu	37	9	77377203	77377203	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:77377203C>A	uc004ajl.1	-	26	4622	c.4384G>T	c.(4384-4386)GAA>TAA	p.E1462*	TRPM6_uc004ajk.1_Nonsense_Mutation_p.E1457*|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Nonsense_Mutation_p.E418*	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1462	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						ACACCAGTTTCATCACCTTCT	0.488													46	98					6.31075e-24	7.57142e-24	1	1	0	
VPS13A	23230	broad.mit.edu	37	9	79875040	79875040	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:79875040G>A	uc004akr.2	+	23	2587	c.2327G>A	c.(2326-2328)CGA>CAA	p.R776Q	VPS13A_uc004akp.3_Missense_Mutation_p.R776Q|VPS13A_uc004akq.3_Missense_Mutation_p.R776Q|VPS13A_uc004aks.2_Missense_Mutation_p.R776Q	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	776					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						ATTTCTTTACGAATCTCAGAT	0.303													13	33					0	0	1	0	0	
VPS13A	23230	broad.mit.edu	37	9	79908403	79908403	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:79908403G>A	uc004akr.2	+	32	3746	c.3486G>A	c.(3484-3486)ACG>ACA	p.T1162T	VPS13A_uc004akp.3_Silent_p.T1162T|VPS13A_uc004akq.3_Silent_p.T1162T|VPS13A_uc004aks.2_Silent_p.T1123T|VPS13A_uc010mpo.1_5'UTR	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1162					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TTTTTGTCACGAAATTTCTAT	0.279													16	44					0	0	1	0	0	
VPS13A	23230	broad.mit.edu	37	9	79952328	79952328	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:79952328A>C	uc004akr.2	+	47	6513	c.6253A>C	c.(6253-6255)AAA>CAA	p.K2085Q	VPS13A_uc004akp.3_Missense_Mutation_p.K2085Q|VPS13A_uc004akq.3_Missense_Mutation_p.K2085Q|VPS13A_uc004aks.2_Missense_Mutation_p.K2046Q|VPS13A_uc004akt.2_Missense_Mutation_p.K425Q	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2085					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TGTTCCAGAAAAAGATAATTT	0.333													38	54					0	0	1	0	0	
GNA14	9630	broad.mit.edu	37	9	80043929	80043929	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:80043929C>T	uc004aku.2	-	5	1140	c.617G>A	c.(616-618)CGA>CAA	p.R206Q		NM_004297	NP_004288	O95837	GNA14_HUMAN	G alpha 14	206					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(2)	2						TCTTTCCGATCGTTGGCCACC	0.453													72	133					0	0	1	0	0	
CEP78	84131	broad.mit.edu	37	9	80863264	80863264	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:80863264A>C	uc004akx.2	+	7	1226	c.950A>C	c.(949-951)AAA>ACA	p.K317T	CEP78_uc004aky.3_Missense_Mutation_p.K317T|CEP78_uc010mpp.2_Missense_Mutation_p.K317T|CEP78_uc011lsp.1_Missense_Mutation_p.K230T	NM_032171	NP_115547	Q5JTW2	CEP78_HUMAN	centrosomal protein 78kDa isoform b	317					G2/M transition of mitotic cell cycle	centrosome|cytosol				ovary(1)	1						AGGAGTGCCAAATCAGAGGTA	0.224													11	23					0	0	1	0	0	
FLJ46321	389763	broad.mit.edu	37	9	84607583	84607583	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:84607583A>C	uc004amn.2	+	4	2245	c.2198A>C	c.(2197-2199)AAT>ACT	p.N733T		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	733						integral to membrane					0						GGACCGTTAAATATCTCTTTG	0.473													27	41					0	0	1	0	0	
FLJ46321	389763	broad.mit.edu	37	9	84608292	84608292	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:84608292T>C	uc004amn.2	+	4	2954	c.2907T>C	c.(2905-2907)TTT>TTC	p.F969F		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	969						integral to membrane					0						GAAGCACTTTTCAAGGAGAAA	0.527													61	125					0	0	1	0	0	
RASEF	158158	broad.mit.edu	37	9	85630729	85630729	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:85630729C>A	uc004amo.1	-	4	1017	c.756G>T	c.(754-756)AAG>AAT	p.K252N		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	252	Potential.				protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						CCTTTCTTAGCTTTTTAATGG	0.428													99	183					4.04957e-52	5.04319e-52	1	1	0	
C9orf64	84267	broad.mit.edu	37	9	86571085	86571085	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:86571085C>T	uc004anb.2	-	1	579	c.331G>A	c.(331-333)GAC>AAC	p.D111N	C9orf64_uc004anc.2_5'UTR	NM_032307	NP_115683	Q5T6V5	CI064_HUMAN	hypothetical protein LOC84267	111											0						CAACCTTCGTCGAGGGCTCTG	0.562													45	95					0	0	1	0	0	
RMI1	80010	broad.mit.edu	37	9	86617293	86617293	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:86617293T>G	uc004anq.3	+	3	1800	c.1392T>G	c.(1390-1392)TGT>TGG	p.C464W	RMI1_uc004anr.3_Missense_Mutation_p.C464W|RMI1_uc004anp.3_Missense_Mutation_p.C464W|RMI1_uc004ans.3_Missense_Mutation_p.C464W	NM_024945	NP_079221	Q9H9A7	RMI1_HUMAN	RMI1, RecQ mediated genome instability 1,	464					DNA replication	nucleus					0						AAAATGATTGTAATTTACAGA	0.303													30	68					0	0	1	0	0	
SLC28A3	64078	broad.mit.edu	37	9	86928299	86928299	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:86928299C>T	uc010mpz.2	-	2	256	c.131G>A	c.(130-132)AGC>AAC	p.S44N	SLC28A3_uc011lsy.1_5'UTR|SLC28A3_uc004anu.1_Missense_Mutation_p.S44N|SLC28A3_uc010mqb.2_5'UTR	NM_022127	NP_071410	Q9HAS3	S28A3_HUMAN	concentrative Na+-nucleoside cotransporter	44	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|plasma membrane	nucleoside binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						GTGCTCCCTGCTTTGCACAGC	0.448													22	42					0	0	1	0	0	
NTRK2	4915	broad.mit.edu	37	9	87339221	87339221	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:87339221C>T	uc004aoa.1	+	10	1741	c.803C>T	c.(802-804)GCG>GTG	p.A268V	NTRK2_uc004anv.1_Missense_Mutation_p.A268V|NTRK2_uc004any.1_Missense_Mutation_p.A268V|NTRK2_uc004anz.1_Missense_Mutation_p.A268V|NTRK2_uc011lsz.1_Missense_Mutation_p.A268V|NTRK2_uc011lta.1_Missense_Mutation_p.A268V|NTRK2_uc004aob.1_Missense_Mutation_p.A268V|NTRK2_uc011ltb.1_Missense_Mutation_p.A112V	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	268	Extracellular (Potential).|Ig-like C2-type 1.				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						TCTTGTGTGGCGGAAAATCTT	0.408										TSP Lung(25;0.17)			74	160					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	9	88460927	88460927	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:88460927C>T	uc004aoh.1	+	9	1515	c.412C>T	c.(412-414)CGT>TGT	p.R138C						RecName: Full=Kinesin-like protein KIF27;																		GAAAGAGTTTCGTAAAAAGGT	0.353													23	43					0	0	1	0	0	
GOLM1	51280	broad.mit.edu	37	9	88650485	88650485	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:88650485C>T	uc004aol.2	-	8	1011	c.813G>A	c.(811-813)CCG>CCA	p.P271P	GOLM1_uc004aom.2_Silent_p.P271P	NM_016548	NP_057632	Q8NBJ4	GOLM1_HUMAN	golgi membrane protein 1	271	Lumenal (Potential).					Golgi apparatus|integral to plasma membrane					0						CTGGCTCCTGCGGCAGCCTGT	0.597											OREG0019278	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	74	212					0	0	1	0	0	
ZCCHC6	79670	broad.mit.edu	37	9	88924147	88924147	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:88924147A>C	uc004aoq.2	-	21	3855	c.3640T>G	c.(3640-3642)TTT>GTT	p.F1214V	ZCCHC6_uc010mqe.2_Missense_Mutation_p.F114V|ZCCHC6_uc011ltf.1_RNA|ZCCHC6_uc004aor.2_RNA|ZCCHC6_uc004aos.2_RNA|ZCCHC6_uc004aot.2_Missense_Mutation_p.F978V|ZCCHC6_uc004aou.2_Missense_Mutation_p.F1214V	NM_024617	NP_078893	Q5VYS8	TUT7_HUMAN	zinc finger, CCHC domain containing 6	1214					RNA 3'-end processing		nucleic acid binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)	2						ATTTGATCAAAAAAATAAATA	0.259													20	38					0	0	1	0	0	
DAPK1	1612	broad.mit.edu	37	9	90264928	90264928	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:90264928G>T	uc004apc.2	+	16	1659	c.1521G>T	c.(1519-1521)AAG>AAT	p.K507N	DAPK1_uc004ape.2_Missense_Mutation_p.K507N|DAPK1_uc004apd.2_Missense_Mutation_p.K507N|DAPK1_uc011ltg.1_Missense_Mutation_p.K507N|DAPK1_uc011lth.1_Missense_Mutation_p.K244N|DAPK1_uc004apf.1_Missense_Mutation_p.K61N	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	507					apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						TGAACATCAAGAACCGAGAAG	0.577									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				34	39					5.91797e-21	7.00173e-21	1	1	0	
C9orf79	286234	broad.mit.edu	37	9	90500035	90500035	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:90500035G>A	uc004app.3	+	4	668	c.633G>A	c.(631-633)GAG>GAA	p.E211E	C9orf79_uc004apo.1_Intron	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	211	Pro-rich.					integral to membrane				ovary(3)	3						CCTTCTCAGAGCCTTTTGGAC	0.597													45	114					0	0	1	0	0	
C9orf79	286234	broad.mit.edu	37	9	90501322	90501322	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:90501322C>A	uc004app.3	+	4	1955	c.1920C>A	c.(1918-1920)TCC>TCA	p.S640S	C9orf79_uc004apo.1_Silent_p.S452S	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	640						integral to membrane				ovary(3)	3						AGGAGCAGTCCTGTGGCCCTC	0.637													19	46					5.03518e-11	5.49976e-11	1	1	0	
FAM75C1	441452	broad.mit.edu	37	9	90537657	90537657	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:90537657T>C	uc010mqi.2	+	4	2864	c.2835T>C	c.(2833-2835)TGT>TGC	p.C945C	FAM75C1_uc004apq.3_Silent_p.C928C	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						ACCCAAACTGTCAAGGCTCAT	0.507													34	55					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	9	90745872	90745872	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:90745872C>T	uc011lti.1	-	4	2109	c.2080G>A	c.(2080-2082)GAA>AAA	p.E694K						SubName: Full=cDNA FLJ59639;																		GCCCCAGATTCGCAGGTGTCT	0.522													39	85					0	0	1	0	0	
SPIN1	10927	broad.mit.edu	37	9	91041483	91041483	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:91041483G>A	uc010mqj.2	+	2	529	c.29G>A	c.(28-30)GGC>GAC	p.G10D	SPIN1_uc004apy.2_Missense_Mutation_p.G10D|SPIN1_uc004apz.2_Missense_Mutation_p.G10D|SPIN1_uc010mqk.2_Missense_Mutation_p.G10D	NM_006717	NP_006708	Q9Y657	SPIN1_HUMAN	spindlin	10					cell cycle|gamete generation|multicellular organismal development	nucleus	methylated histone residue binding				0						AAGACACCTGGCCAGCGGTCC	0.388													20	29					0	0	1	0	0	
CKS2	1164	broad.mit.edu	37	9	91930195	91930195	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:91930195A>G	uc004aqh.2	+	2	265	c.170A>G	c.(169-171)TAC>TGC	p.Y57C		NM_001827	NP_001818	P33552	CKS2_HUMAN	CDC28 protein kinase 2	57					cell division|cell proliferation|phosphatidylinositol-mediated signaling|regulation of cyclin-dependent protein kinase activity|spindle organization		cyclin-dependent protein kinase regulator activity				0						TGGGTTCATTACATGATTCAT	0.373													57	95					0	0	1	0	0	
SEMA4D	10507	broad.mit.edu	37	9	91994492	91994492	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:91994492C>T	uc004aqo.1	-	18	2288	c.1716G>A	c.(1714-1716)GCG>GCA	p.A572A	SEMA4D_uc011ltm.1_Intron|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Silent_p.A570A	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	572	Ig-like C2-type.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						ATTTCAGTTCCGCTGTGCCAC	0.488													67	121					0	0	1	0	0	
NFIL3	4783	broad.mit.edu	37	9	94171887	94171887	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:94171887G>A	uc004arh.2	-	2	1525	c.1130C>T	c.(1129-1131)TCT>TTT	p.S377F		NM_005384	NP_005375	Q16649	NFIL3_HUMAN	nuclear factor, interleukin 3 regulated	377					circadian rhythm|immune response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0						AGGAGTAAGAGAAGAATGTAC	0.408													74	152					0	0	1	0	0	
ROR2	4920	broad.mit.edu	37	9	94486891	94486891	+	Missense_Mutation	SNP	C	T	T	rs148844963	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:94486891C>T	uc004arj.1	-	9	2084	c.1885G>A	c.(1885-1887)GTG>ATG	p.V629M	ROR2_uc004ari.1_Missense_Mutation_p.V489M	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	629	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GAGATCTTCACGTTCAGCTTG	0.587													32	56					0	0	1	0	0	
IARS	3376	broad.mit.edu	37	9	95025292	95025292	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:95025292C>T	uc004art.1	-	17	2003	c.1746G>A	c.(1744-1746)CCG>CCA	p.P582P	IARS_uc004ars.1_Silent_p.P427P|IARS_uc004aru.3_Silent_p.P582P|IARS_uc010mqr.2_Silent_p.P472P|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	582					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	TCTTGAAAGGCGGTTGTCCAA	0.443													13	42					0	0	1	0	0	
OMD	4958	broad.mit.edu	37	9	95177490	95177490	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:95177490C>A	uc004asd.3	-	3	1579	c.1210G>T	c.(1210-1212)GAA>TAA	p.E404*	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron	NM_005014	NP_005005	Q99983	OMD_HUMAN	osteomodulin precursor	404	Asp/Glu-rich (acidic).				cell adhesion	proteinaceous extracellular matrix				ovary(2)	2						CCTTCTTGTTCTGGGCTCTCA	0.368			T	USP6	aneurysmal bone cysts								26	51					4.87955e-14	5.4818e-14	1	1	0	
ASPN	54829	broad.mit.edu	37	9	95222031	95222031	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:95222031T>G	uc004ase.1	-	7	1072	c.828A>C	c.(826-828)AAA>AAC	p.K276N	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ASPN_uc010mqy.1_Intron	NM_017680	NP_060150	Q9BXN1	ASPN_HUMAN	asporin precursor	276	LRR 7.				bone mineralization|negative regulation of tooth mineralization|negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	calcium ion binding				0						TATCTGTGATTTTGTTGTTTC	0.303													9	19					0	0	1	0	0	
ECM2	1842	broad.mit.edu	37	9	95263202	95263202	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:95263202C>T	uc004ash.2	-	9	1803	c.1738G>A	c.(1738-1740)GAA>AAA	p.E580K	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Missense_Mutation_p.E558K|ECM2_uc011lty.1_Missense_Mutation_p.E580K|ECM2_uc004asg.2_Missense_Mutation_p.E558K|ECM2_uc010mqz.1_Missense_Mutation_p.E2K	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	580					cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						AGGCCTGGTTCCATGTGGCCA	0.488													43	96					0	0	1	0	0	
FGD3	89846	broad.mit.edu	37	9	95738699	95738699	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:95738699A>G	uc004asw.2	+	3	789	c.161A>G	c.(160-162)GAC>GGC	p.D54G	FGD3_uc004asx.2_Missense_Mutation_p.D54G|FGD3_uc004asz.2_Missense_Mutation_p.D54G	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	54					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						GCAGCAGGGGACGGCTCTCCA	0.647													7	13					0	0	1	0	0	
ZNF169	169841	broad.mit.edu	37	9	97062108	97062108	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:97062108G>T	uc004aum.1	+	5	373	c.268G>T	c.(268-270)GAA>TAA	p.E90*		NM_194320	NP_919301	Q14929	ZN169_HUMAN	zinc finger protein 169	90						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				GCCTAGAACAGAATTCCAGCC	0.493													22	67					1.55469e-16	1.78953e-16	1	1	0	
HIATL1	84641	broad.mit.edu	37	9	97209126	97209126	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:97209126G>T	uc004aur.2	+	7	1020	c.751G>T	c.(751-753)GAT>TAT	p.D251Y	HIATL1_uc011luh.1_Missense_Mutation_p.D186Y	NM_032558	NP_115947	Q5SR56	HIAL1_HUMAN	hippocampus abundant transcript-like 1	251	Extracellular (Potential).				transmembrane transport	integral to membrane|plasma membrane	protein binding|transporter activity			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				AGTTGGAAAAGATTCTACTGT	0.383													25	61					7.92952e-12	8.72397e-12	1	1	0	
C9orf102	375748	broad.mit.edu	37	9	98685559	98685559	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:98685559G>A	uc004avt.3	+	9	1852	c.1464G>A	c.(1462-1464)AGG>AGA	p.R488R	C9orf102_uc010mrx.1_RNA|C9orf102_uc011lum.1_Silent_p.R190R|C9orf102_uc010mry.1_Silent_p.R190R|C9orf102_uc010mrz.2_Silent_p.R299R|C9orf102_uc004avu.2_5'UTR	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	488					DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				TTATCAAAAGGATATGTGATC	0.323													34	73					0	0	1	0	0	
CDC14B	8555	broad.mit.edu	37	9	99271994	99271994	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:99271994C>A	uc004awj.2	-	13	1873	c.1421G>T	c.(1420-1422)AGA>ATA	p.R474I	CDC14B_uc004awk.2_Intron|CDC14B_uc004awl.2_RNA|CDC14B_uc004awi.2_Missense_Mutation_p.R437I	NM_033331	NP_201588	O60729	CC14B_HUMAN	CDC14 homolog B isoform 2	474					activation of anaphase-promoting complex activity|DNA repair|G2/M transition DNA damage checkpoint	nucleolus|nucleoplasm	protein binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TCTGGTGGTTCTTTTAGTAAT	0.353													31	58					2.70662e-09	2.90636e-09	1	1	0	
CDC14B	8555	broad.mit.edu	37	9	99285665	99285665	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:99285665G>A	uc004awj.2	-	11	1575	c.1123C>T	c.(1123-1125)CGT>TGT	p.R375C	CDC14B_uc004awk.2_Missense_Mutation_p.R375C|CDC14B_uc004awl.2_RNA|CDC14B_uc004awi.2_Missense_Mutation_p.R338C	NM_033331	NP_201588	O60729	CC14B_HUMAN	CDC14 homolog B isoform 2	375	B.				activation of anaphase-promoting complex activity|DNA repair|G2/M transition DNA damage checkpoint	nucleolus|nucleoplasm	protein binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				AACTTCTGACGAAAATAGTCC	0.428													51	98					0	0	1	0	0	
LOC441455	441455	broad.mit.edu	37	9	99488683	99488683	+	RNA	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:99488683G>T	uc011luo.1	+	1		c.581G>T				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						AAGAATCAGAGAAAGAGAAAA	0.493													22	40					2.32416e-17	2.69338e-17	1	1	0	
LOC441455	441455	broad.mit.edu	37	9	99488850	99488850	+	RNA	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:99488850A>C	uc011luo.1	+	1		c.748A>C				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						ACAGCATATAAAATTGTGCAT	0.527													21	30					0	0	1	0	0	
ZNF510	22869	broad.mit.edu	37	9	99521253	99521253	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:99521253C>A	uc004awn.1	-	6	2048	c.1859G>T	c.(1858-1860)AGA>ATA	p.R620I	ZNF510_uc004awo.1_Missense_Mutation_p.R620I	NM_014930	NP_055745	Q9Y2H8	ZN510_HUMAN	zinc finger protein 510	620	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				TGTGTGAATTCTCTGATGATC	0.408													48	101					4.01344e-20	4.73134e-20	1	1	0	
ZNF782	158431	broad.mit.edu	37	9	99580766	99580766	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:99580766T>G	uc004awp.1	-	6	1820	c.1539A>C	c.(1537-1539)AAA>AAC	p.K513N	ZNF782_uc011lup.1_Missense_Mutation_p.K381N	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	513	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				GTTTGAAAGCTTTCCCACATT	0.433													101	138					0	0	1	0	0	
ZNF782	158431	broad.mit.edu	37	9	99581316	99581316	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:99581316C>A	uc004awp.1	-	6	1270	c.989G>T	c.(988-990)AGA>ATA	p.R330I	ZNF782_uc011lup.1_Missense_Mutation_p.R198I	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	330	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				TGCATGAGTTCTCTGATGCAC	0.398													62	164					6.75472e-32	8.2824e-32	1	1	0	
KIAA1529	57653	broad.mit.edu	37	9	100056271	100056271	+	Silent	SNP	C	T	T	rs148564841		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:100056271C>T	uc011lut.1	+	11	902	c.129C>T	c.(127-129)AAC>AAT	p.N43N	KIAA1529_uc011lur.1_RNA|KIAA1529_uc004axe.1_Silent_p.N43N|KIAA1529_uc011lus.1_Intron|KIAA1529_uc010msm.1_RNA	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				TCTTCTACAACGTGCTGCTGG	0.542													59	101					0	0	1	0	0	
TDRD7	23424	broad.mit.edu	37	9	100257990	100257990	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:100257990G>A	uc004axj.2	+	17	3347	c.3122G>A	c.(3121-3123)CGA>CAA	p.R1041Q	TDRD7_uc011lux.1_Missense_Mutation_p.R967Q|TDRD7_uc011luy.1_Missense_Mutation_p.R361Q	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	1041	Interacts with CDK17 (By similarity).|Interacts with CABLES1 (By similarity).				lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				ATGGTGTTTCGAAATCATGTG	0.488													45	123					0	0	1	0	0	
TSTD2	158427	broad.mit.edu	37	9	100380144	100380144	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:100380144T>G	uc004axn.2	-	4	986	c.498A>C	c.(496-498)GAA>GAC	p.E166D	TSTD2_uc004axo.2_5'UTR|TSTD2_uc004axp.1_5'UTR	NM_139246	NP_640339	Q5T7W7	TSTD2_HUMAN	thiosulfate sulfurtransferase (rhodanese)-like	166										ovary(2)	2						CCTCCCCTTCTTCACTGCCCT	0.493													25	45					0	0	1	0	0	
XPA	7507	broad.mit.edu	37	9	100449522	100449522	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:100449522C>T	uc004axr.3	-	4	528	c.411G>A	c.(409-411)AAG>AAA	p.K137K	XPA_uc004axs.3_RNA	NM_000380	NP_000371	P23025	XPA_HUMAN	xeroderma pigmentosum, complementation group A	137					nucleotide-excision repair, DNA damage removal	nucleoplasm	damaged DNA binding|metal ion binding|nucleotide binding|protein domain specific binding|protein homodimerization activity			breast(1)	1		Acute lymphoblastic leukemia(62;0.158)				TGGTTATAAGCTTGTGTTTAT	0.323			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		NER	Xeroderma_Pigmentosum				17	45					0	0	1	0	0	
HEMGN	55363	broad.mit.edu	37	9	100692644	100692644	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:100692644C>A	uc004axy.2	-	3	1141	c.1033G>T	c.(1033-1035)GAA>TAA	p.E345*	HEMGN_uc004axz.2_Nonsense_Mutation_p.E345*	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	345					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TGAGGTGTTTCTTGGATTGTT	0.363													77	136					2.94884e-30	3.60443e-30	1	1	0	
HEMGN	55363	broad.mit.edu	37	9	100692828	100692828	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:100692828T>G	uc004axy.2	-	3	957	c.849A>C	c.(847-849)GAA>GAC	p.E283D	HEMGN_uc004axz.2_Missense_Mutation_p.E283D	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	283					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TTTCATTGTATTCCTCTGGTT	0.413													33	163					0	0	1	0	0	
NANS	54187	broad.mit.edu	37	9	100845151	100845151	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:100845151A>C	uc004ayb.2	+	7	1536	c.894A>C	c.(892-894)AAA>AAC	p.K298N	NANS_uc004ayc.2_Missense_Mutation_p.K298N|TRIM14_uc004ayd.2_Intron|TRIM14_uc004ayf.1_Intron	NM_018946	NP_061819	Q9NR45	SIAS_HUMAN	N-acetylneuraminic acid phosphate synthase	298	AFP-like.				lipopolysaccharide biosynthetic process	cytoplasm	N-acetylneuraminate synthase activity|N-acylneuraminate cytidylyltransferase activity|N-acylneuraminate-9-phosphate synthase activity			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TGGTGGCCAAAGTGAAAATTC	0.468													11	23					0	0	1	0	0	
GABBR2	9568	broad.mit.edu	37	9	101304324	101304324	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:101304324A>C	uc004ays.2	-	3	617	c.461T>G	c.(460-462)CTT>CGT	p.L154R		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	154	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	AGCAAAAGAAAGCTGAAAAAC	0.443													18	25					0	0	1	0	0	
ANKS6	203286	broad.mit.edu	37	9	101536249	101536249	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:101536249C>T	uc004ayu.2	-	9	1752	c.1731G>A	c.(1729-1731)ACG>ACA	p.T577T	ANKS6_uc004ayt.2_Silent_p.T276T|ANKS6_uc004ayv.1_Silent_p.T39T|ANKS6_uc004ayw.1_Silent_p.T159T|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	577										ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				CGTTGTGACGCGTCCGGGACC	0.632													20	35					0	0	1	0	0	
COL15A1	1306	broad.mit.edu	37	9	101767207	101767207	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:101767207G>A	uc004azb.1	+	9	1434	c.1228G>A	c.(1228-1230)GCA>ACA	p.A410T		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	410	Nonhelical region 1 (NC1).|4 X tandem repeats.|2.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GCGTTTAGCAGCAACAGCAGC	0.597													49	75					0	0	1	0	0	
COL15A1	1306	broad.mit.edu	37	9	101801001	101801001	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:101801001C>T	uc004azb.1	+	22	2667	c.2461C>T	c.(2461-2463)CTG>TTG	p.L821L		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	821	Nonhelical region 4 (NC4).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CATTCCTGAGCTGGTGGGGCC	0.463													38	108					0	0	1	0	0	
INVS	27130	broad.mit.edu	37	9	102988353	102988353	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:102988353C>T	uc004bap.1	+	4	495	c.283C>T	c.(283-285)CGT>TGT	p.R95C	INVS_uc010mta.1_5'UTR|INVS_uc011lve.1_5'UTR|INVS_uc004bao.1_Missense_Mutation_p.R95C|INVS_uc004baq.1_5'UTR|INVS_uc004bar.1_5'UTR|INVS_uc010mtb.1_5'UTR	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	95	ANK 3.				negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				GGGAAATTATCGTTTCATGAA	0.333													11	17					0	0	1	0	0	
ZNF189	7743	broad.mit.edu	37	9	104170264	104170264	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:104170264G>T	uc004bbh.1	+	3	490	c.214G>T	c.(214-216)GAA>TAA	p.E72*	ZNF189_uc004bbg.1_Nonsense_Mutation_p.E30*|ZNF189_uc004bbi.1_Nonsense_Mutation_p.E58*|ZNF189_uc011lvk.1_Nonsense_Mutation_p.E57*	NM_003452	NP_003443	O75820	ZN189_HUMAN	zinc finger protein 189 isoform 1	72	KRAB.				negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|kidney(1)|central_nervous_system(1)	6		Acute lymphoblastic leukemia(62;0.0559)				AGAGATTGAAGAAATTGAGGA	0.363													13	23					0.000151284	0.000154703	1	1	0	
RNF20	56254	broad.mit.edu	37	9	104317003	104317003	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:104317003G>A	uc004bbn.2	+	15	2137	c.2047G>A	c.(2047-2049)GAT>AAT	p.D683N		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20	683	Potential.				histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		AAGACTCAAGGATCTGGAAGA	0.368													17	29					0	0	1	0	0	
CYLC2	1539	broad.mit.edu	37	9	105767051	105767051	+	Silent	SNP	T	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:105767051T>A	uc004bbs.2	+	4	325	c.255T>A	c.(253-255)TCT>TCA	p.S85S		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	85	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				TGAGAATTTCTGAGAGACCAT	0.393													30	33					0	0	1	0	0	
CYLC2	1539	broad.mit.edu	37	9	105767610	105767610	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:105767610G>T	uc004bbs.2	+	5	767	c.697G>T	c.(697-699)GAA>TAA	p.E233*		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	233	3 X approximate tandem repeats.|31 X 3 AA repeats of K-K-X.|3.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				TTCAGCCATAGAATTACAAGC	0.388													17	49					6.49762e-13	7.22526e-13	1	1	0	
OR13C4	138804	broad.mit.edu	37	9	107288807	107288807	+	Silent	SNP	C	T	T	rs141274906	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:107288807C>T	uc011lvn.1	-	1	684	c.684G>A	c.(682-684)ACG>ACA	p.T228T		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGGCCGAGTTCGTTCGCAAGA	0.408													40	104					0	0	1	0	0	
OR13C5	138799	broad.mit.edu	37	9	107361671	107361671	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:107361671A>G	uc011lvp.1	-	1	24	c.24T>C	c.(22-24)ATT>ATC	p.I8I		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						ATTCCACCAGAATGGTGTGGT	0.383													37	92					0	0	1	0	0	
ABCA1	19	broad.mit.edu	37	9	107547710	107547710	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:107547710T>G	uc004bcl.2	-	49	6925	c.6612A>C	c.(6610-6612)GAA>GAC	p.E2204D	NIPSNAP3B_uc004bcj.1_Intron	NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	2204					Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAGAGTAGTCTTCTATGTGGA	0.473													18	48					0	0	1	0	0	
ABCA1	19	broad.mit.edu	37	9	107582240	107582240	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:107582240C>T	uc004bcl.2	-	21	3384	c.3071G>A	c.(3070-3072)AGC>AAC	p.S1024N		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	1024	ABC transporter 1.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TTTCAGCTTGCTTGATGGCAA	0.552													40	78					0	0	1	0	0	
TMEM38B	55151	broad.mit.edu	37	9	108536166	108536166	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:108536166G>T	uc004bcu.1	+	6	798	c.681G>T	c.(679-681)CAG>CAT	p.Q227H	TMEM38B_uc010mtn.1_3'UTR	NM_018112	NP_060582	Q9NVV0	TM38B_HUMAN	transmembrane protein 38B	227	Helical; (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			ovary(1)|skin(1)	2						TGACTACACAGACTTCTACTA	0.348													28	85					1.39806e-14	1.58014e-14	1	1	0	
ZNF462	58499	broad.mit.edu	37	9	109691051	109691051	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:109691051G>A	uc004bcz.2	+	3	5147	c.4858G>A	c.(4858-4860)GAG>AAG	p.E1620K	ZNF462_uc010mto.2_Missense_Mutation_p.E1468K|ZNF462_uc004bda.2_Missense_Mutation_p.E1468K	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1620					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						AGTCCCCCTCGAGCCCGAGAT	0.542													39	93					0	0	1	0	0	
ACTL7A	10881	broad.mit.edu	37	9	111624759	111624759	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:111624759G>T	uc004bdj.1	+	1	157	c.157G>T	c.(157-159)GAA>TAA	p.E53*		NM_006687	NP_006678	Q9Y615	ACL7A_HUMAN	actin-like 7A	53						cytoplasm|cytoskeleton|protein complex	structural constituent of cytoskeleton				0						AGAGCCACAAGAACCTACTGA	0.607													25	50					2.12542e-12	2.35257e-12	1	1	0	
IKBKAP	8518	broad.mit.edu	37	9	111689701	111689701	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:111689701G>T	uc004bdm.3	-	4	856	c.336C>A	c.(334-336)ATC>ATA	p.I112I	IKBKAP_uc011lwc.1_5'UTR|IKBKAP_uc010mtq.2_Intron	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	112					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						TCATAACAGAGATACCACTGG	0.433													39	65					1.48646e-12	1.65046e-12	1	1	0	
CTNNAL1	8727	broad.mit.edu	37	9	111761501	111761501	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:111761501T>G	uc004bdo.1	-	2	219	c.177A>C	c.(175-177)AAA>AAC	p.K59N	CTNNAL1_uc010mtt.1_Missense_Mutation_p.K59N|CTNNAL1_uc004bdp.1_Missense_Mutation_p.K59N	NM_003798	NP_003789	Q9UBT7	CTNL1_HUMAN	catenin, alpha-like 1	59					cell adhesion|Rho protein signal transduction	actin cytoskeleton|cytosol|plasma membrane	cadherin binding|structural molecule activity			ovary(1)	1				STAD - Stomach adenocarcinoma(157;0.0768)		TATCAGACTTTTTGGTATTAT	0.323													66	123					0	0	1	0	0	
C9orf5	23731	broad.mit.edu	37	9	111795637	111795637	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:111795637C>T	uc004bdt.3	-	17	2576	c.2544G>A	c.(2542-2544)ACG>ACA	p.T848T	C9orf5_uc004bds.3_RNA|C9orf5_uc004bdr.3_Silent_p.T840T	NM_032012	NP_114401	Q9H330	CI005_HUMAN	hypothetical protein LOC23731	848						integral to membrane				central_nervous_system(1)	1		Myeloproliferative disorder(63;0.204)		OV - Ovarian serous cystadenocarcinoma(323;3.08e-05)|STAD - Stomach adenocarcinoma(157;0.0823)		GAACTGAATTCGTGGGACTCA	0.468													50	113					0	0	1	0	0	
EPB41L4B	54566	broad.mit.edu	37	9	112018421	112018421	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:112018421G>T	uc004bdz.1	-	9	1219	c.924C>A	c.(922-924)TTC>TTA	p.F308L	EPB41L4B_uc004bea.2_Missense_Mutation_p.F308L	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	308	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						ATTACCAAAAGAATAAGCCTA	0.363													34	79					2.42023e-17	2.79957e-17	1	1	0	
SVEP1	79987	broad.mit.edu	37	9	113170530	113170530	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:113170530G>T	uc010mtz.2	-	38	7687	c.7350C>A	c.(7348-7350)ATC>ATA	p.I2450I	SVEP1_uc010mty.2_Silent_p.I376I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2450	Sushi 18.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GCACATCAATGATTCCATTGG	0.498													8	33					0.00307968	0.0031162	1	1	0	
SVEP1	79987	broad.mit.edu	37	9	113198718	113198718	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:113198718G>T	uc010mtz.2	-	28	5043	c.4706C>A	c.(4705-4707)TCT>TAT	p.S1569Y		NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1569	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GCCCACAAAAGACTCAGCTGG	0.473													20	54					0.000132079	0.000135131	1	1	0	
SVEP1	79987	broad.mit.edu	37	9	113208196	113208196	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:113208196C>T	uc010mtz.2	-	26	4721	c.4384G>A	c.(4384-4386)GAC>AAC	p.D1462N	SVEP1_uc010mua.1_Missense_Mutation_p.D1462N	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1462	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TAGTTCATGTCGTCAGAGGAT	0.458													40	67					0	0	1	0	0	
SVEP1	79987	broad.mit.edu	37	9	113221386	113221386	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:113221386A>G	uc010mtz.2	-	19	3667	c.3330T>C	c.(3328-3330)TGT>TGC	p.C1110C	SVEP1_uc010mua.1_Silent_p.C1110C	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1110					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TTCCTTCTGGACAAGGAACTG	0.428													40	90					0	0	1	0	0	
LPAR1	1902	broad.mit.edu	37	9	113704061	113704061	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:113704061C>T	uc004bfa.2	-	4	688	c.433G>A	c.(433-435)GAG>AAG	p.E145K	LPAR1_uc011lwm.1_Missense_Mutation_p.E146K|LPAR1_uc004bfb.2_Missense_Mutation_p.E145K|LPAR1_uc004bfc.2_Missense_Mutation_p.E145K|LPAR1_uc011lwn.1_Missense_Mutation_p.E127K|LPAR1_uc011lwo.1_Missense_Mutation_p.E146K|LPAR1_uc010mub.2_Missense_Mutation_p.E145K	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	145	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						ATGTGCCTCTCGATTGCAATA	0.537													54	92					0	0	1	0	0	
ZNF483	158399	broad.mit.edu	37	9	114304143	114304143	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:114304143A>G	uc004bff.2	+	6	1152	c.928A>G	c.(928-930)AAT>GAT	p.N310D	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	310					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						CTTTGGACATAATTTCAAAGA	0.378													92	162					0	0	1	0	0	
DNAJC25	548645	broad.mit.edu	37	9	114412194	114412194	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:114412194G>T	uc004bfl.2	+	3	1007	c.951G>T	c.(949-951)GAG>GAT	p.E317D	DNAJC25-GNG10_uc004bfn.2_Intron|DNAJC25_uc004bfm.2_Missense_Mutation_p.E195D	NM_001015882	NP_001015882	Q9H1X3	DJC25_HUMAN	DnaJ (Hsp40) homolog, subfamily C , member 25	317					protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0						GGATCAAGGAGAATTATGAGG	0.373													17	26					2.23348e-06	2.32221e-06	1	1	0	
C9orf84	158401	broad.mit.edu	37	9	114462248	114462248	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:114462248C>A	uc004bfr.2	-	22	3112	c.2977G>T	c.(2977-2979)GAA>TAA	p.E993*	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Nonsense_Mutation_p.E954*|C9orf84_uc010mug.2_Nonsense_Mutation_p.E904*	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	993										ovary(2)	2						ACATCCAGTTCTTCAGAGTTT	0.318													42	79					1.15505e-17	1.34158e-17	1	1	0	
UGCG	7357	broad.mit.edu	37	9	114687128	114687128	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:114687128C>A	uc004bft.2	+	4	705	c.415C>A	c.(415-417)CTT>ATT	p.L139I		NM_003358	NP_003349	Q16739	CEGT_HUMAN	ceramide glucosyltransferase	139	Cytoplasmic (Potential).				epidermis development|glucosylceramide biosynthetic process	Golgi membrane|integral to membrane|membrane fraction	ceramide glucosyltransferase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.0433)	Miglustat(DB00419)	AAAGTATGATCTTATATGGAT	0.259													25	48					8.24728e-16	9.42941e-16	1	1	0	
UGCG	7357	broad.mit.edu	37	9	114688676	114688676	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:114688676C>T	uc004bft.2	+	5	748	c.458C>T	c.(457-459)ACG>ATG	p.T153M		NM_003358	NP_003349	Q16739	CEGT_HUMAN	ceramide glucosyltransferase	153	Cytoplasmic (Potential).				epidermis development|glucosylceramide biosynthetic process	Golgi membrane|integral to membrane|membrane fraction	ceramide glucosyltransferase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.0433)	Miglustat(DB00419)	ATTCCAGATACGCTTACTGAC	0.383													37	88					0	0	1	0	0	
KIAA1958	158405	broad.mit.edu	37	9	115421687	115421687	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:115421687T>C	uc004bgf.1	+	4	1664	c.1489T>C	c.(1489-1491)TCC>CCC	p.S497P	KIAA1958_uc011lwx.1_Missense_Mutation_p.S525P	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	497										skin(1)	1						TGTCGGCTTTTCCATCACCAG	0.592													16	30					0	0	1	0	0	
KIAA1958	158405	broad.mit.edu	37	9	115421766	115421766	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:115421766C>T	uc004bgf.1	+	4	1743	c.1568C>T	c.(1567-1569)TCG>TTG	p.S523L	KIAA1958_uc011lwx.1_Missense_Mutation_p.S551L	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	523										skin(1)	1						GCAGGCATGTCGGGCGCGCGT	0.567													6	21					0	0	1	0	0	
ZNF883	169834	broad.mit.edu	37	9	115759713	115759713	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:115759713C>T	uc011lwy.1	-	5	2066	c.827G>A	c.(826-828)CGA>CAA	p.R276Q		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	276	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTGTGTACTTCGACTGAAGGT	0.378													56	125					0	0	1	0	0	
ZFP37	7539	broad.mit.edu	37	9	115805311	115805311	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:115805311A>C	uc004bgm.1	-	4	1615	c.1587T>G	c.(1585-1587)ATT>ATG	p.I529M	ZFP37_uc011lwz.1_Missense_Mutation_p.I544M|ZFP37_uc011lxa.1_Missense_Mutation_p.I530M	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	529	C2H2-type 9.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TAAGGCCTTCAATTTGTTTAA	0.398													36	47					0	0	1	0	0	
ZFP37	7539	broad.mit.edu	37	9	115806243	115806243	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:115806243T>C	uc004bgm.1	-	4	683	c.655A>G	c.(655-657)ACA>GCA	p.T219A	ZFP37_uc011lwz.1_Missense_Mutation_p.T234A|ZFP37_uc011lxa.1_Missense_Mutation_p.T220A	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	219						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CCTTTCCTTGTATCAGATAAG	0.343													11	212					0	0	1	0	0	
FKBP15	23307	broad.mit.edu	37	9	115946040	115946040	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:115946040C>T	uc004bgs.2	-	18	1920	c.1802G>A	c.(1801-1803)CGA>CAA	p.R601Q	FKBP15_uc010muu.1_Missense_Mutation_p.R665Q|FKBP15_uc004bgr.2_Missense_Mutation_p.R48Q|FKBP15_uc011lxc.1_Missense_Mutation_p.R182Q|FKBP15_uc011lxd.1_Missense_Mutation_p.R533Q|FKBP15_uc010mut.1_Missense_Mutation_p.R469Q	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	601	Potential.				endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						CCTCTGATTTCGTTCAATTAG	0.373													29	68					0	0	1	0	0	
PRPF4	9128	broad.mit.edu	37	9	116041260	116041260	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:116041260C>T	uc004bgx.2	+	3	294	c.244C>T	c.(244-246)CGA>TGA	p.R82*	PRPF4_uc004bgy.2_Nonsense_Mutation_p.R81*	NM_004697	NP_004688	O43172	PRP4_HUMAN	PRP4 pre-mRNA processing factor 4 homolog	82				HISERQAEVLAEFERRKRARQINVST -> ISASDRQKYWL SLREGSEPGRSMFPP (in Ref. 3; AAC02261).		Cajal body|nuclear speck|spliceosomal complex|U4/U6 snRNP	protein binding			ovary(2)|pancreas(1)	3						TATCAGCGAGCGACAGGCAGA	0.418													44	69					0	0	1	0	0	
WDR31	114987	broad.mit.edu	37	9	116080896	116080896	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:116080896G>A	uc004bhe.2	-	10	1054	c.802C>T	c.(802-804)CGA>TGA	p.R268*	WDR31_uc004bhc.2_Nonsense_Mutation_p.R267*|WDR31_uc004bhd.2_Nonsense_Mutation_p.R143*|WDR31_uc004bhf.2_RNA	NM_001012361	NP_001012361	Q8NA23	WDR31_HUMAN	WD repeat domain 31 isoform 1	268											0						ATTCTGTTTCGAGTCTGTCTT	0.458													31	69					0	0	1	0	0	
WDR31	114987	broad.mit.edu	37	9	116094237	116094237	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:116094237G>A	uc004bhe.2	-	3	318	c.66C>T	c.(64-66)GTC>GTT	p.V22V	WDR31_uc004bhc.2_Silent_p.V22V|WDR31_uc004bhd.2_5'UTR|WDR31_uc004bhf.2_Intron	NM_001012361	NP_001012361	Q8NA23	WDR31_HUMAN	WD repeat domain 31 isoform 1	22											0						TCCCCATCACGACACAAAACC	0.473													25	60					0	0	1	0	0	
RGS3	5998	broad.mit.edu	37	9	116269874	116269874	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:116269874G>A	uc004bhq.2	+	14	1602	c.1393G>A	c.(1393-1395)GAC>AAC	p.D465N	RGS3_uc004bhr.2_Missense_Mutation_p.D353N|RGS3_uc004bhs.2_Missense_Mutation_p.D355N|RGS3_uc004bht.2_Missense_Mutation_p.D184N|RGS3_uc010muy.2_Missense_Mutation_p.D184N|RGS3_uc004bhu.2_Missense_Mutation_p.D91N	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	465					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						TGCCCCCACCGACCCCAACTA	0.562													3	5					0	0	1	0	0	
ZNF618	114991	broad.mit.edu	37	9	116812263	116812263	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:116812263C>T	uc004bid.2	+	15	2780	c.2681C>T	c.(2680-2682)TCG>TTG	p.S894L	ZNF618_uc004bic.2_Missense_Mutation_p.S801L|ZNF618_uc011lxi.1_Missense_Mutation_p.S861L|ZNF618_uc011lxj.1_Missense_Mutation_p.S862L|ZNF618_uc010mvb.2_Missense_Mutation_p.S484L	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	894					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAGTACTGGTCGTGCGTTACC	0.562													30	54					0	0	1	0	0	
COL27A1	85301	broad.mit.edu	37	9	116930507	116930507	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:116930507C>T	uc011lxl.1	+	3	672	c.672C>T	c.(670-672)GTC>GTT	p.V224V	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Silent_p.V74V	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	224	Laminin G-like.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						TGACGCAGGTCGCTCACAATT	0.562													32	55					0	0	1	0	0	
DFNB31	25861	broad.mit.edu	37	9	117266526	117266526	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:117266526C>T	uc004biz.3	-	1	1205	c.556G>A	c.(556-558)GAC>AAC	p.D186N	DFNB31_uc004biy.3_5'Flank|DFNB31_uc004bja.3_Missense_Mutation_p.D186N|DFNB31_uc004bjb.2_Missense_Mutation_p.D186N	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	186	PDZ 1.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						AGAATCTGGTCCCCGACCCGC	0.547													37	81					0	0	1	0	0	
TNFSF8	944	broad.mit.edu	37	9	117666356	117666356	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:117666356T>C	uc004bji.1	-	4	747	c.560A>G	c.(559-561)TAC>TGC	p.Y187C		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	187	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						GAGATTCTGGTATACGTGTTT	0.428													54	102					0	0	1	0	0	
TNC	3371	broad.mit.edu	37	9	117825464	117825464	+	Missense_Mutation	SNP	C	A	A	rs149347382		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:117825464C>A	uc004bjj.3	-	13	4127	c.3765G>T	c.(3763-3765)GAG>GAT	p.E1255D	TNC_uc010mvf.2_Missense_Mutation_p.E1255D	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1255	Fibronectin type-III 8.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TATCTGGAACCTCCTCTGCAT	0.483													16	37					1.67942e-08	1.78672e-08	1	1	0	
TNC	3371	broad.mit.edu	37	9	117840406	117840406	+	Silent	SNP	G	A	A	rs145321605	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:117840406G>A	uc004bjj.3	-	7	2852	c.2490C>T	c.(2488-2490)ATC>ATT	p.I830I	TNC_uc010mvf.2_Silent_p.I830I	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	830	Fibronectin type-III 3.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CAATGCCATCGATCTCAGCCA	0.557													28	49					0	0	1	0	0	
PAPPA	5069	broad.mit.edu	37	9	118974146	118974146	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:118974146G>T	uc004bjn.2	+	4	2234	c.1853G>T	c.(1852-1854)GGA>GTA	p.G618V	PAPPA_uc011lxp.1_Intron|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	618					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCAGGGCCAGGAAATGACACC	0.532													110	232					2.28619e-77	2.85625e-77	1	1	0	
PAPPA	5069	broad.mit.edu	37	9	118997781	118997781	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:118997781C>T	uc004bjn.2	+	7	2978	c.2597C>T	c.(2596-2598)GCT>GTT	p.A866V	PAPPA_uc011lxp.1_Missense_Mutation_p.A561V|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	866					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GAGATCGATGCTGCCATGTTG	0.562													29	33					0	0	1	0	0	
PAPPA	5069	broad.mit.edu	37	9	118997789	118997789	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:118997789T>C	uc004bjn.2	+	7	2986	c.2605T>C	c.(2605-2607)TTG>CTG	p.L869L	PAPPA_uc011lxp.1_Silent_p.L564L|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	869					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGCTGCCATGTTGACCTCCAC	0.562													29	37					0	0	1	0	0	
ASTN2	23245	broad.mit.edu	37	9	119188144	119188144	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:119188144A>G	uc004bjs.1	-	23	4107	c.4006T>C	c.(4006-4008)TCC>CCC	p.S1336P	ASTN2_uc004bjr.1_Missense_Mutation_p.S1332P|ASTN2_uc004bjt.1_Missense_Mutation_p.S1285P|ASTN2_uc004bjp.1_Missense_Mutation_p.S429P|ASTN2_uc004bjq.1_Intron|ASTN2_uc011lxr.1_Missense_Mutation_p.S388P|ASTN2_uc011lxs.1_Intron|ASTN2_uc011lxt.1_Missense_Mutation_p.S388P|ASTN2_uc004bjo.1_Missense_Mutation_p.S117P	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1336	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CGGCCCTTGGACTCCCCGTAC	0.602													24	52					0	0	1	0	0	
ASTN2	23245	broad.mit.edu	37	9	119625945	119625945	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:119625945G>A	uc004bjs.1	-	11	2058	c.1957C>T	c.(1957-1959)CGT>TGT	p.R653C	ASTN2_uc004bjr.1_Missense_Mutation_p.R649C|ASTN2_uc004bjt.1_Missense_Mutation_p.R602C	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	653	Extracellular (Potential).|EGF-like 2.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GAGCAGTCACGAACTGGCCCG	0.542													23	46					0	0	1	0	0	
CDK5RAP2	55755	broad.mit.edu	37	9	123215733	123215733	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:123215733C>T	uc004bkf.2	-	21	2974	c.2793_splice	c.e21+1	p.R931_splice	CDK5RAP2_uc004bke.2_Splice_Site_p.R216_splice|CDK5RAP2_uc004bkg.2_Splice_Site_p.R931_splice|CDK5RAP2_uc011lxw.1_Splice_Site_p.R196_splice|CDK5RAP2_uc011lxx.1_Splice_Site|CDK5RAP2_uc011lxy.1_Splice_Site|CDK5RAP2_uc011lxz.1_Splice_Site_p.R196_splice|CDK5RAP2_uc011lya.1_Splice_Site_p.R196_splice|CDK5RAP2_uc004bkh.1_Intron|CDK5RAP2_uc004bki.2_Splice_Site_p.R698_splice	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2						brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						GAAAAACTTACTCTGTTGGTA	0.433													31	53					0	0	1	0	0	
C5	727	broad.mit.edu	37	9	123725007	123725007	+	Silent	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:123725007G>T	uc004bkv.2	-	36	4476	c.4446C>A	c.(4444-4446)CTC>CTA	p.L1482L		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	1482					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	CAACTTCAAAGAGTTCAAATA	0.368													50	125					2.74695e-27	3.3328e-27	1	1	0	
C5	727	broad.mit.edu	37	9	123742403	123742403	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:123742403G>A	uc004bkv.2	-	28	3646	c.3616C>T	c.(3616-3618)CGT>TGT	p.R1206C		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	1206					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	ACAATTGAACGAAACTGTGGG	0.333													24	72					0	0	1	0	0	
CEP110	11064	broad.mit.edu	37	9	123912533	123912533	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:123912533G>T	uc004bkx.1	+	23	3766	c.3735G>T	c.(3733-3735)ATG>ATT	p.M1245I	CEP110_uc004bky.1_Missense_Mutation_p.M849I|CEP110_uc004bla.1_Missense_Mutation_p.M693I|CEP110_uc010mvo.1_5'UTR|CEP110_uc004blb.1_5'Flank	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1245	Pro-rich.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						CTGGATACATGATGTATACTG	0.512													36	73					6.90743e-12	7.60866e-12	1	1	0	
CEP110	11064	broad.mit.edu	37	9	123927254	123927254	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:123927254G>T	uc004bkx.1	+	33	5488	c.5457G>T	c.(5455-5457)ATG>ATT	p.M1819I	CEP110_uc004blb.1_Missense_Mutation_p.M488I|CEP110_uc010mvp.1_5'UTR	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1819	Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						ATAGCAAAATGGAGCAATCAA	0.403													26	44					3.6726e-16	4.20841e-16	1	1	0	
CEP110	11064	broad.mit.edu	37	9	123928390	123928390	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:123928390C>T	uc004bkx.1	+	34	5618	c.5587C>T	c.(5587-5589)CGA>TGA	p.R1863*	CEP110_uc004blb.1_Nonsense_Mutation_p.R532*|CEP110_uc010mvp.1_Translation_Start_Site	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1863	Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						TTTAGAAAAACGAGAAGCAGT	0.333													12	21					0	0	1	0	0	
NDUFA8	4702	broad.mit.edu	37	9	124914534	124914534	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:124914534C>T	uc004blv.2	-	2	347	c.205G>A	c.(205-207)GAC>AAC	p.D69N		NM_014222	NP_055037	P51970	NDUA8_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	69	CHCH 1.				mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			breast(1)	1					NADH(DB00157)	CTAAAGAAGTCCAAAGCACAC	0.408													20	42					0	0	1	0	0	
MORN5	254956	broad.mit.edu	37	9	124936902	124936902	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:124936902C>T	uc004blw.2	+	4	497	c.435C>T	c.(433-435)AAC>AAT	p.N145N	MORN5_uc011lyn.1_Silent_p.N145N|MORN5_uc011lyo.1_3'UTR	NM_198469	NP_940871	Q5VZ52	MORN5_HUMAN	MORN repeat containing 5	145											0						TTCTAAGAAACGCAGGTAGGT	0.448													29	59					0	0	1	0	0	
LHX6	26468	broad.mit.edu	37	9	124976602	124976602	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:124976602G>A	uc010mvw.2	-	5	765	c.656C>T	c.(655-657)GCC>GTC	p.A219V	LHX6_uc004blx.3_Missense_Mutation_p.A248V|LHX6_uc004bly.3_Missense_Mutation_p.A248V	NM_014368	NP_055183	Q9UPM6	LHX6_HUMAN	LIM homeobox protein 6 isoform 1	219	Homeobox.				cell maturation|cerebral cortex GABAergic interneuron migration|cerebral cortex radially oriented cell migration|cerebral cortex tangential migration	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CGCGCGCTTGGCCGGCTTGGG	0.582													6	20					0	0	1	0	0	
RBM18	92400	broad.mit.edu	37	9	125009820	125009820	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125009820G>A	uc004bma.2	-	4	470	c.304C>T	c.(304-306)CGA>TGA	p.R102*	RBM18_uc004blz.2_RNA|RBM18_uc010mvy.2_RNA|RBM18_uc011lyp.1_Intron	NM_033117	NP_149108	Q96H35	RBM18_HUMAN	RNA binding motif protein 18	102	RRM.						nucleotide binding|RNA binding				0						TGTGCCCATCGCACCACCAGC	0.483													21	60					0	0	1	0	0	
OR1J2	26740	broad.mit.edu	37	9	125273593	125273593	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125273593G>A	uc004bmj.1	+	4	1368	c.513G>A	c.(511-513)GCG>GCA	p.A171A	OR1J2_uc011lyv.1_Silent_p.A171A	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						TCTGTGCTGCGAACACCATCC	0.532													47	84					0	0	1	0	0	
OR1N1	138883	broad.mit.edu	37	9	125288673	125288673	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125288673C>A	uc004bmn.1	-	1	900	c.900G>T	c.(898-900)AAG>AAT	p.K300N		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						TGAAGAGCCTCTTTAGGGCCC	0.333													18	42					7.41877e-09	7.92233e-09	1	1	0	
OR1L3	26735	broad.mit.edu	37	9	125437916	125437916	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125437916A>G	uc011lzb.1	+	1	508	c.508A>G	c.(508-510)ACA>GCA	p.T170A		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CACCTTTTGTACATCAAATGT	0.453													116	228					0	0	1	0	0	
OR1L4	254973	broad.mit.edu	37	9	125486541	125486541	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125486541G>T	uc004bmu.1	+	1	273	c.273G>T	c.(271-273)AAG>AAT	p.K91N		NM_001005235	NP_001005235	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGAGACAAAGATTATCTCTT	0.458													13	133					5.50884e-06	5.70595e-06	1	1	0	
OR1K1	392392	broad.mit.edu	37	9	125562444	125562444	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125562444T>G	uc011lze.1	+	1	43	c.43T>G	c.(43-45)TTA>GTA	p.L15V		NM_080859	NP_543135	Q8NGR3	OR1K1_HUMAN	olfactory receptor, family 1, subfamily K,	15	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTCATTCGTTTTATTGGGACT	0.522													16	33					0	0	1	0	0	
ZBTB6	10773	broad.mit.edu	37	9	125674239	125674239	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125674239T>C	uc004bnh.2	-	2	202	c.113A>G	c.(112-114)TAC>TGC	p.Y38C		NM_006626	NP_006617	Q15916	ZBTB6_HUMAN	zinc finger and BTB domain containing 6	38	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTCATTAATGTAAATTGATAC	0.383													52	102					0	0	1	0	0	
ZBTB26	57684	broad.mit.edu	37	9	125682174	125682174	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125682174T>G	uc004bnj.2	-	2	252	c.40A>C	c.(40-42)AAT>CAT	p.N14H	ZBTB26_uc004bnk.2_Missense_Mutation_p.N14H	NM_020924	NP_065975	Q9HCK0	ZBT26_HUMAN	zinc finger and BTB domain containing 26	14					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCCATAATTTTCAAACTTG	0.308													13	24					0	0	1	0	0	
RABGAP1	23637	broad.mit.edu	37	9	125758389	125758389	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125758389C>A	uc011lzh.1	+	7	1127	c.993C>A	c.(991-993)ATC>ATA	p.I331I	RABGAP1_uc004bnl.3_RNA	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	331					cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						AGATTGTCATCTATGTGCAGC	0.328													32	80					8.16721e-17	9.41672e-17	1	1	0	
RABGAP1	23637	broad.mit.edu	37	9	125861055	125861055	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125861055C>A	uc011lzh.1	+	23	2929	c.2795C>A	c.(2794-2796)TCT>TAT	p.S932Y	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc011lzj.1_Missense_Mutation_p.S271Y	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	932	Potential.				cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						AAAAACAGTTCTATCATTGGT	0.438													24	42					9.57634e-11	1.04293e-10	1	1	0	
STRBP	55342	broad.mit.edu	37	9	125935984	125935984	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:125935984A>G	uc004bns.2	-	5	792	c.362T>C	c.(361-363)GTC>GCC	p.V121A	STRBP_uc004bnt.2_5'UTR|STRBP_uc004bnu.2_Missense_Mutation_p.V107A|STRBP_uc004bnv.2_Missense_Mutation_p.V121A	NM_018387	NP_060857	Q96SI9	STRBP_HUMAN	spermatid perinuclear RNA binding protein	121	DZF.				multicellular organismal development	cytoplasm|nucleus	DNA binding			breast(1)|skin(1)	2						ATTATCTTTGACTGTATTTAA	0.378													49	89					0	0	1	0	0	
LHX2	9355	broad.mit.edu	37	9	126777465	126777465	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:126777465C>T	uc004boe.1	+	3	1127	c.388C>T	c.(388-390)CGC>TGC	p.R130C	LHX2_uc010mwi.1_Missense_Mutation_p.R138C	NM_004789	NP_004780	P50458	LHX2_HUMAN	LIM homeobox protein 2	130	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GATGGTGATGCGCGCTCGGGA	0.622													56	136					0	0	1	0	0	
NR6A1	2649	broad.mit.edu	37	9	127289152	127289152	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:127289152G>A	uc004bor.1	-	8	1285	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I	NR6A1_uc004boq.1_Silent_p.I364I|NR6A1_uc010mwq.1_Silent_p.I365I	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	369					cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						TGAGCCGCTCGATCACCTCCA	0.483													44	67					0	0	1	0	0	
GOLGA1	2800	broad.mit.edu	37	9	127684102	127684102	+	Missense_Mutation	SNP	G	A	A	rs149867372		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:127684102G>A	uc004bpc.2	-	9	973	c.631C>T	c.(631-633)CGT>TGT	p.R211C	GOLGA1_uc010mws.2_RNA|GOLGA1_uc010mwt.1_Missense_Mutation_p.R186C	NM_002077	NP_002068	Q92805	GOGA1_HUMAN	golgin 97	211	Potential.					Golgi cisterna membrane				ovary(1)	1						TCCTGGGTACGACTAAGTTCT	0.418													74	137					0	0	1	0	0	
GAPVD1	26130	broad.mit.edu	37	9	128086089	128086089	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:128086089G>A	uc010mwx.2	+	11	2071	c.1745G>A	c.(1744-1746)CGC>CAC	p.R582H	GAPVD1_uc011lzs.1_Missense_Mutation_p.R582H|GAPVD1_uc004bpp.2_Missense_Mutation_p.R582H|GAPVD1_uc004bpq.2_Missense_Mutation_p.R582H|GAPVD1_uc004bpr.2_Missense_Mutation_p.R561H|GAPVD1_uc004bps.2_Missense_Mutation_p.R582H|GAPVD1_uc010mwy.1_Missense_Mutation_p.R441H	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	582					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CCTTCAAATCGCTCCAATTCA	0.418													35	51					0	0	1	0	0	
ANGPTL2	23452	broad.mit.edu	37	9	129870556	129870556	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:129870556G>A	uc004bqr.1	-	2	955	c.455C>T	c.(454-456)GCG>GTG	p.A152V	RALGPS1_uc004bqo.1_Intron|RALGPS1_uc011mab.1_Intron|RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron|ANGPTL2_uc010mxg.1_Intron	NM_012098	NP_036230	Q9UKU9	ANGL2_HUMAN	angiopoietin-like 2 precursor	152	Potential.				multicellular organismal development|signal transduction	extracellular space	receptor binding				0						GAGCTCCAACGCGTTGTCCCG	0.597													18	34					0	0	1	0	0	
RALGPS1	9649	broad.mit.edu	37	9	129974967	129974967	+	Missense_Mutation	SNP	C	T	T	rs138132214		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:129974967C>T	uc004bqo.1	+	16	1682	c.1415C>T	c.(1414-1416)GCC>GTC	p.A472V	RALGPS1_uc011mac.1_Missense_Mutation_p.A430V|RALGPS1_uc004bqq.3_Missense_Mutation_p.A430V	NM_014636	NP_055451	Q5JS13	RGPS1_HUMAN	Ral GEF with PH domain and SH3 binding motif 1	472	Required for stimulation of nucleotide exchange by RALA.|PH.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity			ovary(1)	1						TACTACGGAGCCAAGTCCTTG	0.567													12	22					0	0	1	0	0	
SH2D3C	10044	broad.mit.edu	37	9	130536742	130536742	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:130536742G>A	uc004bsc.2	-	2	184	c.42C>T	c.(40-42)TTC>TTT	p.F14F	SH2D3C_uc004bsd.1_5'UTR	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	14					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TGAACTTGAAGAACTCTAGCA	0.488													16	23					0	0	1	0	0	
FPGS	2356	broad.mit.edu	37	9	130569902	130569902	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:130569902G>A	uc004bsg.1	+	8	729	c.679G>A	c.(679-681)GAC>AAC	p.D227N	FPGS_uc004bsh.1_Missense_Mutation_p.D44N|FPGS_uc011mal.1_Missense_Mutation_p.D201N|FPGS_uc004bsi.1_Missense_Mutation_p.D177N	NM_004957	NP_004948	Q05932	FOLC_HUMAN	folylpolyglutamate synthase isoform a precursor	227					folic acid metabolic process|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|one-carbon metabolic process	cytosol|mitochondrial matrix	ATP binding|tetrahydrofolylpolyglutamate synthase activity				0					L-Glutamic Acid(DB00142)	TCTTGGCATCGACCACACCAG	0.532													13	21					0	0	1	0	0	
SLC25A25	114789	broad.mit.edu	37	9	130860921	130860921	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:130860921C>T	uc004bte.2	+	1	105	c.76C>T	c.(76-78)CTC>TTC	p.L26F	SLC25A25_uc004btb.2_Intron|SLC25A25_uc004btc.2_Intron|SLC25A25_uc004btd.2_Intron|SLC25A25_uc004btf.2_5'UTR	NM_052901	NP_443133	Q6KCM7	SCMC2_HUMAN	solute carrier family 25, member 25 isoform a	26	Mitochondrial intermembrane (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding				0						GTCGAAGGGGCTCCCTGCCGA	0.597													42	94					0	0	1	0	0	
SLC27A4	10999	broad.mit.edu	37	9	131107806	131107806	+	Silent	SNP	C	A	A	rs149776553		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:131107806C>A	uc004but.2	+	3	818	c.534C>A	c.(532-534)GTC>GTA	p.V178V	SLC27A4_uc004buu.2_Intron	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	178					long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						GGGCCCTTGTCTTTGGCAGCG	0.647													5	15					3.59834e-05	3.69903e-05	1	1	0	
ZER1	10444	broad.mit.edu	37	9	131503881	131503881	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:131503881T>G	uc004bwa.1	-	11	2103	c.1670A>C	c.(1669-1671)GAA>GCA	p.E557A		NM_006336	NP_006327	Q7Z7L7	ZER1_HUMAN	zyg-11 homolog B (C. elegans)-like	557					ATP hydrolysis coupled proton transport|regulation of ubiquitin-protein ligase activity	Cul2-RING ubiquitin ligase complex|vacuolar proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism|ubiquitin-protein ligase activity			ovary(1)	1						GTCAGGAGTTTCATCTGTGAT	0.577													44	83					0	0	1	0	0	
TBC1D13	54662	broad.mit.edu	37	9	131565546	131565546	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:131565546G>T	uc010myj.2	+	8	684	c.561G>T	c.(559-561)AAG>AAT	p.K187N	TBC1D13_uc010myk.2_Intron|TBC1D13_uc010myl.2_Missense_Mutation_p.K6N	NM_018201	NP_060671	Q9NVG8	TBC13_HUMAN	TBC1 domain family, member 13	187	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0						CCCCACACAAGAACTCTGTGC	0.458													13	50					1.49906e-05	1.54644e-05	1	1	0	
PHYHD1	254295	broad.mit.edu	37	9	131703788	131703788	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:131703788G>A	uc004bwo.2	+	12	1701	c.768G>A	c.(766-768)TCG>TCA	p.S256S	PHYHD1_uc004bwn.2_Missense_Mutation_p.R249H|PHYHD1_uc004bwm.2_RNA|PHYHD1_uc004bwp.2_Silent_p.S235S|NUP188_uc004bwq.1_5'UTR	NM_001100876	NP_001094346	Q5SRE7	PHYD1_HUMAN	phytanoyl-CoA dioxygenase domain containing 1	256							metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CTGACCGCTCGCGCCAGGCCT	0.617													36	61					0	0	1	0	0	
DOLK	22845	broad.mit.edu	37	9	131708138	131708138	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:131708138G>A	uc004bwr.2	-	1	1875	c.1445C>T	c.(1444-1446)GCG>GTG	p.A482V	NUP188_uc004bws.1_5'Flank|NUP188_uc004bwq.1_Intron	NM_014908	NP_055723	Q9UPQ8	DOLK_HUMAN	dolichol kinase	482	Helical; (Potential).				dolichyl diphosphate biosynthetic process|dolichyl monophosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane|membrane fraction	dolichol kinase activity				0						AATGATCTGCGCAAATATAGA	0.488													57	93					0	0	1	0	0	
DOLK	22845	broad.mit.edu	37	9	131708450	131708450	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:131708450T>C	uc004bwr.2	-	1	1563	c.1133A>G	c.(1132-1134)TAC>TGC	p.Y378C	NUP188_uc004bws.1_5'Flank|NUP188_uc004bwq.1_Intron	NM_014908	NP_055723	Q9UPQ8	DOLK_HUMAN	dolichol kinase	378	Helical; (Potential).				dolichyl diphosphate biosynthetic process|dolichyl monophosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane|membrane fraction	dolichol kinase activity				0						GATGCGGAAGTAGCGCACATA	0.527													53	103					0	0	1	0	0	
NUP188	23511	broad.mit.edu	37	9	131730975	131730975	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:131730975A>G	uc004bws.1	+	9	798	c.776A>G	c.(775-777)GAT>GGT	p.D259G		NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	259					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						GAGACTATGGATCCTTTTGTA	0.428													52	85					0	0	1	0	0	
NUP188	23511	broad.mit.edu	37	9	131747191	131747191	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:131747191G>A	uc004bws.1	+	20	1996	c.1974G>A	c.(1972-1974)ATG>ATA	p.M658I	NUP188_uc004bwu.2_Missense_Mutation_p.M1I	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	658					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						CGGAAGGGATGAATGCTGGAG	0.433											OREG0003924	type=REGULATORY REGION|Gene=NUP188|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	39	47					0	0	1	0	0	
NUP188	23511	broad.mit.edu	37	9	131761490	131761490	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:131761490G>A	uc004bws.1	+	33	3577	c.3555G>A	c.(3553-3555)ACG>ACA	p.T1185T	NUP188_uc004bwu.2_Silent_p.T528T	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	1185					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						GACCCTTGACGGAGATCCTGG	0.398											OREG0003925	type=REGULATORY REGION|Gene=AK025292|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	26	87					0	0	1	0	0	
TOR1A	1861	broad.mit.edu	37	9	132584974	132584974	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:132584974G>A	uc004byl.2	-	2	407	c.330C>T	c.(328-330)TTC>TTT	p.F110F	TOR1A_uc004bym.2_RNA|TOR1A_uc004byn.2_Silent_p.F110F	NM_000113	NP_000104	O14656	TOR1A_HUMAN	torsin A precursor	110					chaperone mediated protein folding requiring cofactor|response to unfolded protein	endoplasmic reticulum lumen|nuclear membrane	ATP binding|serine-type endopeptidase activity|unfolded protein binding			central_nervous_system(1)	1		Ovarian(14;0.00556)				TCTTGCTGACGAAATTTTTGC	0.468													73	114					0	0	1	0	0	
USP20	10868	broad.mit.edu	37	9	132618599	132618599	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:132618599C>T	uc004bys.2	+	4	306	c.95C>T	c.(94-96)TCG>TTG	p.S32L	USP20_uc004byr.2_Missense_Mutation_p.S32L|USP20_uc004byt.1_Missense_Mutation_p.S32L	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	32	UBP-type.				endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				ACCTGTCAGTCGTGTGGGGTC	0.587													57	131					0	0	1	0	0	
FNBP1	23048	broad.mit.edu	37	9	132658222	132658222	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:132658222C>T	uc004byw.1	-	16	1960	c.1741G>A	c.(1741-1743)GAG>AAG	p.E581K	FNBP1_uc011mbv.1_Missense_Mutation_p.E571K|FNBP1_uc011mbw.1_Missense_Mutation_p.E576K|FNBP1_uc004bza.2_Missense_Mutation_p.E515K|FNBP1_uc004byz.1_Missense_Mutation_p.E552K|FNBP1_uc004byv.1_5'Flank|FNBP1_uc011mbu.1_Missense_Mutation_p.E209K|FNBP1_uc004byx.1_Missense_Mutation_p.E497K|FNBP1_uc004byy.1_Missense_Mutation_p.E487K	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	581	Required for self-association and induction of membrane tubulation.|Interaction with FASLG.|SH3.|Interaction with PDE6G (By similarity).|Interaction with DNM1 and DNM3.|Required for interaction with TNKS.|Interaction with DNM2 and WASL.|Interaction with ARHGAP17, DAAM1, DIAPH1 and DIAPH2.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		TTGTCTTCCTCTATGACATAC	0.428			T	MLL	AML								16	41					0	0	1	0	0	
FNBP1	23048	broad.mit.edu	37	9	132665242	132665242	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:132665242T>C	uc004byw.1	-	13	1553	c.1334A>G	c.(1333-1335)AAT>AGT	p.N445S	FNBP1_uc011mbv.1_Missense_Mutation_p.N435S|FNBP1_uc011mbw.1_Missense_Mutation_p.N440S|FNBP1_uc004bza.2_Missense_Mutation_p.N379S|FNBP1_uc004byz.1_Missense_Mutation_p.N416S|FNBP1_uc011mbu.1_Missense_Mutation_p.N73S|FNBP1_uc004byx.1_Missense_Mutation_p.N361S|FNBP1_uc004byy.1_Missense_Mutation_p.N351S	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	445	Required for self-association and induction of membrane tubulation.|Interaction with RND2 (By similarity).|REM.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		CATCTGAGGATTCTTTAGGTA	0.358			T	MLL	AML								6	5					0	0	1	0	0	
GPR107	57720	broad.mit.edu	37	9	132866788	132866788	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:132866788C>T	uc004bze.2	+	13	1448	c.1221C>T	c.(1219-1221)GTC>GTT	p.V407V	GPR107_uc004bzb.2_Silent_p.V218V|GPR107_uc004bzc.3_RNA|GPR107_uc011mbx.1_Silent_p.V407V|GPR107_uc004bzd.2_Silent_p.V407V	NM_001136557	NP_001130029	Q5VW38	GP107_HUMAN	G protein-coupled receptor 107 isoform 1	407	Helical; Name=5; (Potential).					integral to membrane				upper_aerodigestive_tract(1)	1		Ovarian(14;0.000531)				TATTTCTGGTCGACCTGTTGT	0.532													10	31					0	0	1	0	0	
LAMC3	10319	broad.mit.edu	37	9	133920995	133920995	+	Silent	SNP	C	T	T	rs143375693	by1000genomes	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:133920995C>T	uc004caa.1	+	8	1565	c.1467C>T	c.(1465-1467)TGC>TGT	p.C489C		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	489	Laminin EGF-like 5; first part.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		CCAAGGTGTGCGCGTCCACTG	0.597													19	42					0	0	1	0	0	
UCK1	83549	broad.mit.edu	37	9	134401365	134401365	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:134401365C>T	uc004cay.2	-	6	705	c.604_splice	c.e6-1	p.T202_splice	UCK1_uc010mzk.2_Splice_Site_p.T193_splice|UCK1_uc004cba.2_Splice_Site_p.D170_splice|UCK1_uc004caz.2_Splice_Site	NM_031432	NP_113620	Q9HA47	UCK1_HUMAN	uridine-cytidine kinase 1 isoform a						pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;2.34e-05)|Epithelial(140;0.000219)		ACTTCTTTGTCTGTAAGGCAC	0.562													48	95					0	0	1	0	0	
RAPGEF1	2889	broad.mit.edu	37	9	134497187	134497187	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:134497187T>G	uc004cbc.2	-	11	1980	c.1850A>C	c.(1849-1851)CAG>CCG	p.Q617P	RAPGEF1_uc004cbb.2_Missense_Mutation_p.Q635P|RAPGEF1_uc010mzm.2_RNA|RAPGEF1_uc010mzn.2_Missense_Mutation_p.Q622P|RAPGEF1_uc004cbd.2_Missense_Mutation_p.Q622P|RAPGEF1_uc010mzs.1_Missense_Mutation_p.Q63P|RAPGEF1_uc010mzl.1_Missense_Mutation_p.Q63P|RAPGEF1_uc010mzo.1_Missense_Mutation_p.Q63P|RAPGEF1_uc010mzp.1_Missense_Mutation_p.Q63P|RAPGEF1_uc010mzq.1_Missense_Mutation_p.Q63P|RAPGEF1_uc010mzr.1_Missense_Mutation_p.Q63P	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	617	SH3-binding.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		ACTCACCAGCTGCCGCTGCTT	0.617													6	4					0	0	1	0	0	
NTNG2	84628	broad.mit.edu	37	9	135073374	135073374	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:135073374A>G	uc004cbh.2	+	3	1011	c.235A>G	c.(235-237)AAC>GAC	p.N79D		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	79	Laminin N-terminal.				axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		CCTATGCAGCAACGAGTGTGA	0.657													11	38					0	0	1	0	0	
SETX	23064	broad.mit.edu	37	9	135150684	135150684	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:135150684C>T	uc004cbk.2	-	23	7242	c.7059G>A	c.(7057-7059)ACG>ACA	p.T2353T	SETX_uc004cbj.2_Silent_p.T1972T|SETX_uc010mzt.2_Silent_p.T1972T	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	2353					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		TCTGAATCATCGTCTTCTGGG	0.318													51	122					0	0	1	0	0	
SETX	23064	broad.mit.edu	37	9	135204697	135204697	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:135204697T>G	uc004cbk.2	-	10	2471	c.2288A>C	c.(2287-2289)GAA>GCA	p.E763A	SETX_uc004cbj.2_Missense_Mutation_p.E382A|SETX_uc010mzt.2_Missense_Mutation_p.E382A	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	763					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		AGAGAAATCTTCATTCGATGT	0.363													62	98					0	0	1	0	0	
SETX	23064	broad.mit.edu	37	9	135221766	135221766	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:135221766T>C	uc004cbk.2	-	4	453	c.270A>G	c.(268-270)GTA>GTG	p.V90V		NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	90					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		CATTATTGTCTACTATATATA	0.358													24	37					0	0	1	0	0	
TTF1	7270	broad.mit.edu	37	9	135251430	135251430	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:135251430C>T	uc004cbl.2	-	11	2642	c.2590G>A	c.(2590-2592)GAC>AAC	p.D864N	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Missense_Mutation_p.D349N	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	864					negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		TAAAAGATGTCTCGAAATGGG	0.303													19	51					0	0	1	0	0	
C9orf7	11094	broad.mit.edu	37	9	136330477	136330477	+	Silent	SNP	G	A	A	rs149884279		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:136330477G>A	uc011mdg.1	+	3	330	c.228G>A	c.(226-228)GCG>GCA	p.A76A	C9orf7_uc004cec.2_Intron|C9orf7_uc011mdh.1_Silent_p.A76A|C9orf7_uc011mdi.1_Intron|C9orf7_uc010nan.2_RNA	NM_017586	NP_060056	Q9UGQ2	FLOWR_HUMAN	hypothetical protein LOC11094 isoform a	76	Helical; (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(294;5.7e-39)|all cancers(34;1.83e-23)|OV - Ovarian serous cystadenocarcinoma(145;8.94e-08)|Epithelial(140;1.01e-06)		TGTGTGAGGCGCCCTTCTGCT	0.607													40	77					0	0	1	0	0	
ADAMTSL2	9719	broad.mit.edu	37	9	136412278	136412278	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:136412278G>T	uc011mdl.1	+	9	1439	c.882G>T	c.(880-882)GAG>GAT	p.E294D	ADAMTSL2_uc004cei.2_Missense_Mutation_p.E294D	NM_001145320	NP_001138792	Q86TH1	ATL2_HUMAN	ADAMTS-like 2 precursor	294					negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;9.31e-08)|Epithelial(140;6.62e-07)|all cancers(34;7.74e-06)		ATGTCTATGAGACCGGAATCG	0.602													89	227					1.97602e-69	2.46611e-69	1	1	0	
DBH	1621	broad.mit.edu	37	9	136508639	136508639	+	Silent	SNP	C	T	T	rs78200745		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:136508639C>T	uc004cel.2	+	4	858	c.849C>T	c.(847-849)TGC>TGT	p.C283C		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	283	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	GCGGGCCCTGCGACTCCAAGA	0.662													23	64					0	0	1	0	0	
DBH	1621	broad.mit.edu	37	9	136509381	136509381	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:136509381T>C	uc004cel.2	+	5	972	c.963T>C	c.(961-963)GGT>GGC	p.G321G		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	321	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CCTTCGGGGGTCCAGGGTCCT	0.607													13	89					0	0	1	0	0	
BRD3	8019	broad.mit.edu	37	9	136913345	136913345	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:136913345C>T	uc004cew.2	-	6	1134	c.946G>A	c.(946-948)GAC>AAC	p.D316N	BRD3_uc004cex.2_Missense_Mutation_p.D316N	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	316						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		AGGATGCTGTCGCAGTAGCGT	0.637			T	NUT|C15orf55	lethal midline carcinoma of young people								12	12					0	0	1	0	0	
COL5A1	1289	broad.mit.edu	37	9	137630640	137630640	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:137630640G>A	uc004cfe.2	+	11	1862	c.1480G>A	c.(1480-1482)GAC>AAC	p.D494N		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	494	Interrupted collagenous region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCAAGTCGGGGACCCTGGAGA	0.572													9	74					0	0	1	0	0	
CAMSAP1	157922	broad.mit.edu	37	9	138706958	138706958	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:138706958C>A	uc004cgr.3	-	16	4491	c.4491G>T	c.(4489-4491)AAG>AAT	p.K1497N	CAMSAP1_uc004cgq.3_Missense_Mutation_p.K1387N|CAMSAP1_uc010nbg.2_Missense_Mutation_p.K1219N	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	1497	CKK.					cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		ATATGGAATTCTTGTGGGGTT	0.383													8	17					0.0477658	0.0479884	1	1	0	
SEC16A	9919	broad.mit.edu	37	9	139371654	139371654	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:139371654C>A	uc004chx.2	-	3	723	c.414G>T	c.(412-414)ATG>ATT	p.M138I	SEC16A_uc004chv.3_5'Flank|SEC16A_uc004chw.2_Missense_Mutation_p.M138I|SEC16A_uc010nbn.2_Missense_Mutation_p.M138I|SEC16A_uc010nbo.1_Missense_Mutation_p.M138I	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CACTCCTGTTCATCTCAGGCC	0.557													54	89					4.88482e-21	5.78106e-21	1	1	0	
NOTCH1	4851	broad.mit.edu	37	9	139391777	139391777	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:139391777C>T	uc004chz.2	-	34	6414	c.6414G>A	c.(6412-6414)CCG>CCA	p.P2138P		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	2138	Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GCGAGCAGAGCGGGGGCGACA	0.692			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			13	32					0	0	1	0	0	
FAM69B	138311	broad.mit.edu	37	9	139617800	139617800	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:139617800C>T	uc004cik.2	+	5	964	c.870C>T	c.(868-870)TAC>TAT	p.Y290Y	FAM69B_uc004cil.2_Silent_p.Y203Y|SNHG7_uc004cim.2_Intron	NM_152421	NP_689634	Q5VUD6	FA69B_HUMAN	hypothetical protein LOC138311	290	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;1.03e-05)|Epithelial(140;0.00013)		ACGGCTCTTACGGGACTTTCT	0.632													30	59					0	0	1	0	0	
LCN10	414332	broad.mit.edu	37	9	139637344	139637344	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:139637344C>T	uc010nbq.2	-	1	71	c.12G>A	c.(10-12)GGG>GGA	p.G4G	LCN10_uc004civ.2_Silent_p.G4G|LCN10_uc011med.1_RNA|LCN10_uc011mee.1_Silent_p.G4G|LCN10_uc011mef.1_RNA|LCN10_uc004ciw.2_RNA			Q6JVE6	LCN10_HUMAN	SubName: Full=LCN10 protein;	4					transport	extracellular region	binding			large_intestine(1)	1	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.32e-06)|Epithelial(140;7.83e-05)		gcaccagcagcccctgcctca	0.408													20	31					0	0	1	0	0	
LCN15	389812	broad.mit.edu	37	9	139658209	139658209	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:139658209G>A	uc004cjd.2	-	3	288	c.263C>T	c.(262-264)GCC>GTC	p.A88V		NM_203347	NP_976222	Q6UWW0	LCN15_HUMAN	lipocalin 15 precursor	88					lipid metabolic process	extracellular region	binding|transporter activity				0						CAGGTACTCGGCATCCACCTG	0.672													22	37					0	0	1	0	0	
NDOR1	27158	broad.mit.edu	37	9	140108241	140108241	+	Silent	SNP	C	T	T	rs144473922		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:140108241C>T	uc004clw.2	+	4	432	c.321C>T	c.(319-321)TTC>TTT	p.F107F	NDOR1_uc004clx.2_Silent_p.F107F|NDOR1_uc011mes.1_Silent_p.F107F|NDOR1_uc004cly.2_Silent_p.F107F	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	107	FMN (By similarity).|Flavodoxin-like.				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		GGTTCAACTTCGTGGCCAAGA	0.682													7	17					0	0	1	0	0	
FAM166A	401565	broad.mit.edu	37	9	140140191	140140191	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:140140191G>A	uc004cmi.1	-	2	226	c.171C>T	c.(169-171)TCC>TCT	p.S57S		NM_001001710	NP_001001710	Q6J272	F166A_HUMAN	hypothetical protein LOC401565	57										ovary(1)	1						TGGACATGGGGGACAGCACAG	0.617													23	38					0	0	1	0	0	
EHMT1	79813	broad.mit.edu	37	9	140646849	140646849	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:140646849G>A	uc011mfc.1	+	7	1274	c.1237G>A	c.(1237-1239)GAG>AAG	p.E413K	EHMT1_uc004coa.2_Missense_Mutation_p.E413K|EHMT1_uc004cob.1_Missense_Mutation_p.E382K	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	413					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		AGGCGGTGACGAGTCTGACCT	0.592													10	24					0	0	1	0	0	
EHMT1	79813	broad.mit.edu	37	9	140671280	140671280	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:140671280G>A	uc011mfc.1	+	12	2039	c.2002G>A	c.(2002-2004)GAC>AAC	p.D668N	EHMT1_uc004coa.2_Missense_Mutation_p.D668N|EHMT1_uc004cob.1_Missense_Mutation_p.D637N	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	668					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		GGGCAGGGCCGACACCACAAC	0.592													18	28					0	0	1	0	0	
CACNA1B	774	broad.mit.edu	37	9	140777318	140777318	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:140777318C>T	uc004cog.2	+	3	658	c.513C>T	c.(511-513)TTC>TTT	p.F171F	uc004cof.1_RNA	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	171	Helical; Name=S3 of repeat I; (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TCATGGACTTCGTGGTCGTCC	0.607													51	236					0	0	1	0	0	
CACNA1B	774	broad.mit.edu	37	9	140954118	140954118	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:140954118G>A	uc004cog.2	+	31	4742	c.4597G>A	c.(4597-4599)GAT>AAT	p.D1533N	CACNA1B_uc011mfd.1_Missense_Mutation_p.D1063N|CACNA1B_uc004coi.2_Missense_Mutation_p.D747N	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1533	Cytoplasmic (Potential).|IV.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CTATTTCAGAGATGCCTGGAA	0.433													22	77					0	0	1	0	0	
CACNA1B	774	broad.mit.edu	37	9	140972701	140972701	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:140972701C>T	uc004cog.2	+	35	5230	c.5085C>T	c.(5083-5085)TGC>TGT	p.C1695C	CACNA1B_uc004coi.2_Silent_p.C907C|CACNA1B_uc004cok.1_RNA|CACNA1B_uc010ncp.1_Silent_p.C50C	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1695	Helical; Name=S6 of repeat IV; (Potential).|IV.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TCTTCCTGTGCTCCTTTCTGG	0.567													10	27					0	0	1	0	0	
CACNA1B	774	broad.mit.edu	37	9	141016245	141016245	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr9:141016245G>A	uc004cog.2	+	46	6959	c.6814G>A	c.(6814-6816)GCC>ACC	p.A2272T	CACNA1B_uc004coi.2_Missense_Mutation_p.A1484T	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	2272	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CTCTGTCCACGCCCTGCCTGA	0.647													23	34					0	0	1	0	0	
SHOX	6473	broad.mit.edu	37	X	591664	591664	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:591664C>A	uc004cph.1	+	2	723	c.32C>A	c.(31-33)TCT>TAT	p.S11Y	SHOX_uc004cpi.2_Missense_Mutation_p.S11Y	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	11					skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GTATCCAAGTCTTTTGACCAG	0.637													68	171					2.84776e-26	3.44286e-26	1	1	0	
SHOX	6473	broad.mit.edu	37	X	601807	601807	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:601807G>A	uc004cph.1	+	5	1309	c.618G>A	c.(616-618)CGG>CGA	p.R206R	SHOX_uc004cpi.2_Silent_p.R206R	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	206					skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GAGCCTTACGGATGCCTTTCC	0.567													23	50					0	0	1	0	0	
ASMT	438	broad.mit.edu	37	X	1742126	1742126	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:1742126C>T	uc004cqd.2	+	3	309	c.164C>T	c.(163-165)GCC>GTC	p.A55V	ASMT_uc010ncy.2_Missense_Mutation_p.A55V|ASMT_uc004cqe.2_Missense_Mutation_p.A55V	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	55					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GGTGTGAGGGCCAGCGCCCAT	0.642													14	32					0	0	1	0	0	
DHRSX	207063	broad.mit.edu	37	X	2139159	2139159	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:2139159T>C	uc004cqf.3	-	7	965	c.916A>G	c.(916-918)ACC>GCC	p.T306A		NM_145177	NP_660160	Q8N5I4	DHRSX_HUMAN	dehydrogenase/reductase (SDR family) X-linked	306							binding|oxidoreductase activity				0		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				TGGTTGTAGGTGACGTGGAGG	0.527													44	63					0	0	1	0	0	
DHRSX	207063	broad.mit.edu	37	X	2326792	2326792	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:2326792C>T	uc004cqf.3	-	3	329	c.280G>A	c.(280-282)GAC>AAC	p.D94N		NM_145177	NP_660160	Q8N5I4	DHRSX_HUMAN	dehydrogenase/reductase (SDR family) X-linked	94							binding|oxidoreductase activity				0		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				GTACCTTTGTCGTTCAAGGTT	0.388													8	25					0	0	1	0	0	
NLGN4X	57502	broad.mit.edu	37	X	6069042	6069042	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:6069042C>T	uc010ndh.2	-	2	967	c.466G>A	c.(466-468)GAA>AAA	p.E156K	NLGN4X_uc004crp.2_Missense_Mutation_p.E156K|NLGN4X_uc004crq.2_Missense_Mutation_p.E156K|NLGN4X_uc010ndi.2_Missense_Mutation_p.E156K|NLGN4X_uc004crr.2_Missense_Mutation_p.E156K|NLGN4X_uc010ndj.2_Missense_Mutation_p.E156K	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	156	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						TCACCATCTTCCGTGGGCACG	0.423													46	17					0	0	1	0	0	
TBL1X	6907	broad.mit.edu	37	X	9679717	9679717	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:9679717G>A	uc010ndq.2	+	16	1874	c.1506G>A	c.(1504-1506)ACG>ACA	p.T502T	TBL1X_uc004csq.3_Silent_p.T451T|TBL1X_uc010ndr.2_Silent_p.T451T|TBL1X_uc004csr.2_Silent_p.T502T|TBL1X_uc004css.2_Silent_p.T453T	NM_001139466	NP_001132938	O60907	TBL1X_HUMAN	transducin beta-like 1X isoform a	502					canonical Wnt receptor signaling pathway|cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|sensory perception of sound|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein C-terminus binding|protein domain specific binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Hepatocellular(5;0.000888)				ACACGCTCACGAAGCATCAGG	0.517													25	9					0	0	1	0	0	
SHROOM2	357	broad.mit.edu	37	X	9863383	9863383	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:9863383C>T	uc004csu.1	+	4	1525	c.1435C>T	c.(1435-1437)CCC>TCC	p.P479S		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	479					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				GGGTCCCCGGCCCTGTGTGCA	0.677													18	5					0	0	1	0	0	
FRMPD4	9758	broad.mit.edu	37	X	12701697	12701697	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:12701697C>T	uc004cuz.1	+	6	1070	c.564C>T	c.(562-564)GGC>GGT	p.G188G	FRMPD4_uc011mij.1_Silent_p.G180G	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	188					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						TCATCAACGGCCAAGTGTCGG	0.448													22	7					0	0	1	0	0	
TLR7	51284	broad.mit.edu	37	X	12905084	12905084	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:12905084C>A	uc004cvc.2	+	3	1596	c.1457C>A	c.(1456-1458)TCT>TAT	p.S486Y		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	486	Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	TCTTTCATGTCTGTTAATGAA	0.358													76	30					1.71382e-40	2.12464e-40	1	1	0	
TLR8	51311	broad.mit.edu	37	X	12937551	12937551	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:12937551T>C	uc004cve.2	+	2	460	c.392T>C	c.(391-393)CTG>CCG	p.L131P	TLR8_uc004cvd.2_Missense_Mutation_p.L149P	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	131	LRR 1.|Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						AGGGAGTTACTGCTTGAAGAC	0.408													78	23					0	0	1	0	0	
TLR8	51311	broad.mit.edu	37	X	12940036	12940036	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:12940036T>G	uc004cve.2	+	2	2945	c.2877T>G	c.(2875-2877)GCT>GCG	p.A959A	TLR8_uc004cvd.2_Silent_p.A977A	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	959	Cytoplasmic (Potential).|TIR.				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						TTAAAACAGCTTTTTACTTGG	0.388													41	21					0	0	1	0	0	
ASB9	140462	broad.mit.edu	37	X	15267048	15267048	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:15267048A>G	uc004cwl.2	-	6	825	c.578T>C	c.(577-579)GTG>GCG	p.V193A	ASB9_uc004cwk.2_Missense_Mutation_p.V193A|ASB9_uc004cwm.2_Missense_Mutation_p.V183A|ASB9_uc010ner.2_Missense_Mutation_p.V193A|ASB9_uc004cwn.2_Missense_Mutation_p.V164A	NM_001031739	NP_001026909	Q96DX5	ASB9_HUMAN	ankyrin repeat and SOCS box-containing 9 isoform	193	ANK 5.				intracellular signal transduction						0	Hepatocellular(33;0.183)					CCCTTGGTTCACGTCCGCTCC	0.537													21	21					0	0	1	0	0	
ASB11	140456	broad.mit.edu	37	X	15333600	15333600	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:15333600C>T	uc004cwp.1	-	1	128	c.128G>A	c.(127-129)GGA>GAA	p.G43E	ASB11_uc004cwo.1_5'Flank|ASB11_uc010nes.1_RNA|ASB11_uc010net.1_Missense_Mutation_p.G43E	NM_080873	NP_543149	Q8WXH4	ASB11_HUMAN	ankyrin repeat and SOCS box-containing protein	43					intracellular signal transduction					breast(2)|skin(1)	3	Hepatocellular(33;0.183)					TTTTCTATTTCCTTTGACGAT	0.299													36	18					0	0	1	0	0	
PIR	8544	broad.mit.edu	37	X	15474167	15474167	+	Missense_Mutation	SNP	G	A	A	rs149497039		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:15474167G>A	uc004cwu.2	-	5	522	c.284C>T	c.(283-285)GCG>GTG	p.A95V	PIR_uc004cwv.2_Missense_Mutation_p.A95V	NM_003662	NP_003653	O00625	PIR_HUMAN	pirin	95					transcription from RNA polymerase II promoter	cytoplasm|nucleus	metal ion binding|protein binding|quercetin 2,3-dioxygenase activity|transcription cofactor activity			ovary(1)	1	Hepatocellular(33;0.183)					GCCCCGGCCCGCAGTCATCCA	0.493													97	44					0	0	1	0	0	
GRPR	2925	broad.mit.edu	37	X	16141926	16141926	+	Translation_Start_Site	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:16141926A>G	uc004cxj.2	+	1	503	c.-150A>G	c.(-152--148)ATACC>ATGCC			NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor						cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					AGTTTTGAATACCATAGTTAG	0.353											OREG0019682	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	7					0	0	1	0	0	
GRPR	2925	broad.mit.edu	37	X	16170750	16170750	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:16170750T>C	uc004cxj.2	+	3	1790	c.1137T>C	c.(1135-1137)TGT>TGC	p.C379C		NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor	379	Cytoplasmic (Potential).				cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					GAAACATCTGTCACGAGCGGT	0.517													79	56					0	0	1	0	0	
NHS	4810	broad.mit.edu	37	X	17745600	17745600	+	Missense_Mutation	SNP	C	T	T	rs145005596		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:17745600C>T	uc004cxx.2	+	6	3649	c.3311C>T	c.(3310-3312)TCG>TTG	p.S1104L	NHS_uc011mix.1_Missense_Mutation_p.S1125L|NHS_uc004cxy.2_Missense_Mutation_p.S948L|NHS_uc004cxz.2_Missense_Mutation_p.S927L|NHS_uc004cya.2_Missense_Mutation_p.S827L	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	1104						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					ACACTGAGGTCGAATCCTCCA	0.413													69	34					0	0	1	0	0	
PHKA2	5256	broad.mit.edu	37	X	18938281	18938281	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:18938281G>A	uc004cyv.3	-	18	2262	c.1832C>T	c.(1831-1833)TCG>TTG	p.S611L	PHKA2_uc004cyu.3_5'UTR|PHKA2_uc010nfg.1_RNA	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	611					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					TGTGTAGAACGATGTGGTGAG	0.433													63	24					0	0	1	0	0	
MAP3K15	389840	broad.mit.edu	37	X	19410570	19410570	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:19410570C>T	uc004czk.1	-	18	2278	c.641G>A	c.(640-642)CGA>CAA	p.R214Q	MAP3K15_uc004czj.1_Missense_Mutation_p.R174Q	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	739	Protein kinase.						ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					CCATTTGGATCGCAGAAGAGC	0.433													61	17					0	0	1	0	0	
SH3KBP1	30011	broad.mit.edu	37	X	19626054	19626054	+	Splice_Site	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:19626054A>C	uc004czm.2	-	9	1321	c.1005_splice	c.e9+1	p.N335_splice	SH3KBP1_uc011mje.1_Splice_Site_p.N74_splice|SH3KBP1_uc011mjf.1_Splice_Site_p.N97_splice|SH3KBP1_uc004czl.2_Splice_Site_p.N298_splice	NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a						apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						AAGGAGACTTACATTCCCTTC	0.413													24	9					0	0	1	0	0	
RPS6KA3	6197	broad.mit.edu	37	X	20195149	20195149	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:20195149C>T	uc004czu.2	-	11	899	c.899G>A	c.(898-900)CGA>CAA	p.R300Q	RPS6KA3_uc011mjk.1_Missense_Mutation_p.R271Q|RPS6KA3_uc004czv.2_Missense_Mutation_p.R288Q|RPS6KA3_uc011mjl.1_Missense_Mutation_p.R272Q|RPS6KA3_uc011mjm.1_Missense_Mutation_p.R272Q	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	300	Protein kinase 1.				axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity	p.R300R(1)		central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						GAAAAGCATTCGTAAAAGACT	0.338													43	25					0	0	1	0	0	
DDX53	168400	broad.mit.edu	37	X	23019630	23019630	+	Missense_Mutation	SNP	G	A	A	rs149709546	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:23019630G>A	uc004daj.2	+	1	1544	c.1456G>A	c.(1456-1458)GAC>AAC	p.D486N		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	486	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						CTTGTCAAGCGACTTCAATAT	0.413													46	22					0	0	1	0	0	
PTCHD1	139411	broad.mit.edu	37	X	23397823	23397823	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:23397823T>C	uc004dal.3	+	2	475	c.467T>C	c.(466-468)GTC>GCC	p.V156A	PTCHD1_uc010nfu.1_Missense_Mutation_p.V156A	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	156					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						ATAGTGCACGTCCTGGAAGAG	0.458													49	22					0	0	1	0	0	
PTCHD1	139411	broad.mit.edu	37	X	23411641	23411641	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:23411641G>T	uc004dal.3	+	3	2014	c.2006G>T	c.(2005-2007)AGG>ATG	p.R669M		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	669					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						GAAACCCTGAGGAGACTTTCT	0.478													32	24					1.61788e-16	1.85964e-16	1	1	0	
PRDX4	10549	broad.mit.edu	37	X	23689659	23689659	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:23689659G>A	uc004dam.2	+	2	298	c.255G>A	c.(253-255)GCG>GCA	p.A85A		NM_006406	NP_006397	Q13162	PRDX4_HUMAN	peroxiredoxin 4	85	Thioredoxin.				cell redox homeostasis|I-kappaB phosphorylation		thioredoxin peroxidase activity			upper_aerodigestive_tract(1)	1						CCAAGCCAGCGCCCTACTGGG	0.388													13	17					0	0	1	0	0	
POLA1	5422	broad.mit.edu	37	X	24751894	24751894	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:24751894T>C	uc004dbl.2	+	17	1799	c.1776T>C	c.(1774-1776)TGT>TGC	p.C592C	POLA1_uc004dbn.2_Silent_p.C456C	NM_016937	NP_058633	P09884	DPOLA_HUMAN	DNA-directed DNA polymerase alpha 1	592					cell proliferation|DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	chromatin binding|DNA-directed DNA polymerase activity|metal ion binding|nucleoside binding			ovary(2)|skin(1)	3					Clofarabine(DB00631)|Fludarabine(DB01073)	CAAAGGACTGTATTTTTCCAT	0.343													51	6					0	0	1	0	0	
POLA1	5422	broad.mit.edu	37	X	24751916	24751916	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:24751916G>T	uc004dbl.2	+	17	1821	c.1798G>T	c.(1798-1800)GAA>TAA	p.E600*	POLA1_uc004dbn.2_Nonsense_Mutation_p.E464*	NM_016937	NP_058633	P09884	DPOLA_HUMAN	DNA-directed DNA polymerase alpha 1	600					cell proliferation|DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	chromatin binding|DNA-directed DNA polymerase activity|metal ion binding|nucleoside binding			ovary(2)|skin(1)	3					Clofarabine(DB00631)|Fludarabine(DB01073)	TGCTTTCAAAGAAGTCATTGA	0.353													24	32					2.14196e-07	2.24787e-07	1	1	0	
SMEK3P	139420	broad.mit.edu	37	X	27480680	27480680	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:27480680T>C	uc004dbu.1	-	1	779	c.734A>G	c.(733-735)GAT>GGT	p.D245G		NR_002784				RecName: Full=Putative SMEK homolog 3;												0						GAACTTCGCATCGTTGGTCAA	0.393													15	2					0	0	1	0	0	
MAGEB2	4113	broad.mit.edu	37	X	30237408	30237408	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:30237408G>T	uc004dbz.2	+	2	814	c.711G>T	c.(709-711)GAG>GAT	p.E237D		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	237	MAGE.						protein binding			ovary(1)	1						ATGGAGAGGAGCACTCAGTCT	0.498													21	29					7.45023e-12	8.20436e-12	1	1	0	
DMD	1756	broad.mit.edu	37	X	31164479	31164479	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:31164479G>T	uc004dda.1	-	76	11094	c.10850C>A	c.(10849-10851)TCT>TAT	p.S3617Y	DMD_uc004dcq.1_Missense_Mutation_p.S888Y|DMD_uc004dcr.1_Missense_Mutation_p.S1037Y|DMD_uc004dcs.1_Missense_Mutation_p.S1047Y|DMD_uc004dct.1_Missense_Mutation_p.S1157Y|DMD_uc004dcu.1_Missense_Mutation_p.S1157Y|DMD_uc004dcv.1_Missense_Mutation_p.S1144Y|DMD_uc004dcw.2_Missense_Mutation_p.S2273Y|DMD_uc004dcx.2_Missense_Mutation_p.S2276Y|DMD_uc004dcz.2_Missense_Mutation_p.S3494Y|DMD_uc004dcy.1_Missense_Mutation_p.S3613Y|DMD_uc004ddb.1_Missense_Mutation_p.S3609Y|DMD_uc004dcm.1_Missense_Mutation_p.S549Y|DMD_uc004dcn.1_Missense_Mutation_p.S536Y|DMD_uc004dco.1_Missense_Mutation_p.S549Y|DMD_uc004dcp.1_Missense_Mutation_p.S536Y|DMD_uc011mkb.1_Missense_Mutation_p.S439Y	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3617					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				CCTCTGTAGAGAGGTAGAAGG	0.473													20	41					5.35267e-07	5.59727e-07	1	1	0	
DMD	1756	broad.mit.edu	37	X	32235105	32235105	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:32235105T>G	uc004dda.1	-	44	6610	c.6366A>C	c.(6364-6366)GAA>GAC	p.E2122D	DMD_uc004dcw.2_Missense_Mutation_p.E778D|DMD_uc004dcx.2_Missense_Mutation_p.E781D|DMD_uc004dcz.2_Missense_Mutation_p.E1999D|DMD_uc004dcy.1_Missense_Mutation_p.E2118D|DMD_uc004ddb.1_Missense_Mutation_p.E2114D|DMD_uc010ngo.1_Missense_Mutation_p.E31D|DMD_uc010ngn.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2122	Spectrin 15.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ACTGTTCAGCTTCTGTTAGCC	0.348													28	6					0	0	1	0	0	
DMD	1756	broad.mit.edu	37	X	32328264	32328264	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:32328264G>T	uc004dda.1	-	42	6296	c.6052C>A	c.(6052-6054)CTC>ATC	p.L2018I	DMD_uc004dcw.2_Missense_Mutation_p.L674I|DMD_uc004dcx.2_Missense_Mutation_p.L677I|DMD_uc004dcz.2_Missense_Mutation_p.L1895I|DMD_uc004dcy.1_Missense_Mutation_p.L2014I|DMD_uc004ddb.1_Missense_Mutation_p.L2010I|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2018	Spectrin 14.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GGAGCATTGAGAAGTTGTTCC	0.393													32	63					1.90571e-15	2.17219e-15	1	1	0	
CXorf22	170063	broad.mit.edu	37	X	36007570	36007570	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:36007570A>C	uc004ddj.2	+	16	2907	c.2848A>C	c.(2848-2850)ATT>CTT	p.I950L	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	950										large_intestine(1)|lung(1)|ovary(1)	3						TGCACATGTAATTATTTTCCT	0.363													24	25					0	0	1	0	0	
XK	7504	broad.mit.edu	37	X	37545370	37545370	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:37545370G>A	uc004ddq.2	+	1	238	c.156G>A	c.(154-156)CAG>CAA	p.Q52Q		NM_021083	NP_066569	P51811	XK_HUMAN	membrane transport protein XK	52	Helical; (Potential).				amino acid transport	integral to membrane	protein binding|transporter activity				0		all_lung(315;0.175)				CGCTCGTGCAGCTCACGCTTC	0.667													23	5					0	0	1	0	0	
CYBB	1536	broad.mit.edu	37	X	37651246	37651246	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:37651246C>T	uc004ddr.2	+	4	332	c.271C>T	c.(271-273)CGA>TGA	p.R91*	CYBB_uc011mke.1_RNA|CYBB_uc011mkf.1_Nonsense_Mutation_p.R59*|CYBB_uc011mkg.1_5'UTR	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	91	Cytoplasmic (Potential).|Ferric oxidoreductase.				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						AACAAGAGTTCGAAGACAACT	0.348													79	15					0	0	1	0	0	
CYBB	1536	broad.mit.edu	37	X	37665699	37665699	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:37665699G>A	uc004ddr.2	+	11	1435	c.1374G>A	c.(1372-1374)CTG>CTA	p.L458L	CYBB_uc011mkf.1_Silent_p.L426L|CYBB_uc011mkg.1_Silent_p.L191L	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	458	Cytoplasmic (Potential).				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						CAGATCTGCTGCAACTGCTGG	0.502													33	48					0	0	1	0	0	
SYTL5	94122	broad.mit.edu	37	X	37984742	37984742	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:37984742G>A	uc004ddu.2	+	17	2567	c.2033G>A	c.(2032-2034)CGT>CAT	p.R678H	SYTL5_uc004ddv.2_Missense_Mutation_p.R678H|SYTL5_uc004ddx.2_Missense_Mutation_p.R700H	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	678	C2 2.				intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						GGAGGAGTTCGTTTGAATTCT	0.507													35	58					0	0	1	0	0	
RPGR	6103	broad.mit.edu	37	X	38158349	38158349	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:38158349G>A	uc004ded.1	-	10	1273	c.1105C>T	c.(1105-1107)CGT>TGT	p.R369C	RPGR_uc004deb.2_Missense_Mutation_p.R369C|RPGR_uc004dea.2_RNA|RPGR_uc004dec.2_RNA|RPGR_uc004dee.1_Missense_Mutation_p.R54C	NM_001034853	NP_001030025	Q92834	RPGR_HUMAN	retinitis pigmentosa GTPase regulator isoform C	369					intracellular protein transport|response to stimulus|visual perception	Golgi apparatus|photoreceptor outer segment	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						GCCACACCACGATGAGGAGCA	0.403													15	24					0	0	1	0	0	
USP9X	8239	broad.mit.edu	37	X	41000424	41000424	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:41000424G>T	uc004dfb.2	+	8	1609	c.976G>T	c.(976-978)GAA>TAA	p.E326*	USP9X_uc004dfc.2_Nonsense_Mutation_p.E326*	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	326					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						AGGACAAGAAGAAACTGTTAA	0.284													16	20					2.32078e-09	2.49434e-09	1	1	0	
GPR82	27197	broad.mit.edu	37	X	41587118	41587118	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:41587118A>C	uc004dfs.1	+	3	1079	c.839A>C	c.(838-840)AAC>ACC	p.N280T	CASK_uc004dfl.3_Intron|CASK_uc004dfm.3_Intron|CASK_uc004dfn.3_Intron|GPR82_uc004dft.2_Missense_Mutation_p.N280T|GPR82_uc004dfu.1_RNA	NM_080817	NP_543007	Q96P67	GPR82_HUMAN	G protein-coupled receptor 82	280	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						CAAAGAGATAACTGTCAGCAA	0.323													6	72					0	0	1	0	0	
MIR221	407006	broad.mit.edu	37	X	45605641	45605641	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:45605641G>A	hsa-mir-221|MI0000298	-			c.54G>A			uc011mle.1_RNA																	0						GTTGCCTAACGAACACAGAAA	0.443													12	28					0	0	1	0	0	
RBM10	8241	broad.mit.edu	37	X	47041358	47041358	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47041358G>A	uc004dhf.2	+	16	2081	c.1702G>A	c.(1702-1704)GAC>AAC	p.D568N	RBM10_uc004dhg.2_Missense_Mutation_p.D490N|RBM10_uc004dhh.2_Missense_Mutation_p.D567N|RBM10_uc010nhq.2_Missense_Mutation_p.D491N|RBM10_uc004dhi.2_Missense_Mutation_p.D633N	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	568	Tyr-rich.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						AGCTGTTCCCGACGTCTCTAC	0.577													20	29					0	0	1	0	0	
RBM10	8241	broad.mit.edu	37	X	47044457	47044457	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47044457G>A	uc004dhf.2	+	18	2333	c.1954G>A	c.(1954-1956)GCC>ACC	p.A652T	RBM10_uc004dhg.2_Missense_Mutation_p.A574T|RBM10_uc004dhh.2_Missense_Mutation_p.A651T|RBM10_uc010nhq.2_Missense_Mutation_p.A575T|RBM10_uc004dhi.2_Missense_Mutation_p.A717T	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	652					mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						CCCCCAGATTGCCAAGGACAT	0.468													6	7					0	0	1	0	0	
UBA1	7317	broad.mit.edu	37	X	47065665	47065665	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47065665G>A	uc004dhj.3	+	16	1911	c.1760G>A	c.(1759-1761)CGC>CAC	p.R587H	UBA1_uc004dhk.3_Missense_Mutation_p.R587H|UBA1_uc004dhm.2_5'Flank	NM_153280	NP_695012	P22314	UBA1_HUMAN	ubiquitin-activating enzyme E1	587	1-2.|2 approximate repeats.				cell death|protein modification process		ATP binding|ligase activity|protein binding|small protein activating enzyme activity			ovary(1)	1						ATGGACCGCCGCTGTGTCTAC	0.547													20	12					0	0	1	0	0	
UBA1	7317	broad.mit.edu	37	X	47072566	47072566	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47072566G>A	uc004dhj.3	+	23	2975	c.2824G>A	c.(2824-2826)GCA>ACA	p.A942T	UBA1_uc004dhk.3_Missense_Mutation_p.A942T|UBA1_uc004dhm.2_Missense_Mutation_p.A390T	NM_153280	NP_695012	P22314	UBA1_HUMAN	ubiquitin-activating enzyme E1	942					cell death|protein modification process		ATP binding|ligase activity|protein binding|small protein activating enzyme activity			ovary(1)	1						ACCCCTTGCCGCACCACGTCA	0.552													30	11					0	0	1	0	0	
ZNF157	7712	broad.mit.edu	37	X	47272103	47272103	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47272103A>G	uc004dhr.1	+	4	700	c.631A>G	c.(631-633)ACT>GCT	p.T211A		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	211	C2H2-type 2.				negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCATCAGAAAACTCACACAGG	0.438													59	18					0	0	1	0	0	
ZNF41	7592	broad.mit.edu	37	X	47308810	47308810	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47308810C>A	uc004dhs.3	-	4	552	c.485G>T	c.(484-486)AGA>ATA	p.R162I	ZNF41_uc004dhu.3_Missense_Mutation_p.R154I|ZNF41_uc004dht.3_Missense_Mutation_p.R34I|ZNF41_uc004dhv.3_Missense_Mutation_p.R130I|ZNF41_uc004dhw.3_Missense_Mutation_p.R122I|ZNF41_uc004dhy.3_Missense_Mutation_p.R120I|ZNF41_uc004dhx.3_Missense_Mutation_p.R120I|ZNF41_uc011mlm.1_Missense_Mutation_p.R34I|ZNF41_uc004dhz.2_Intron|ZNF41_uc004dia.2_Intron	NM_153380	NP_700359	P51814	ZNF41_HUMAN	zinc finger protein 41	162						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3		all_lung(315;0.000129)				TTGATCAAATCTCTCACAGTG	0.383													14	19					9.31168e-06	9.63026e-06	1	1	0	
SYN1	6853	broad.mit.edu	37	X	47464761	47464761	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47464761A>C	uc004die.2	-	4	674	c.545T>G	c.(544-546)TTT>TGT	p.F182C	SYN1_uc004did.2_Missense_Mutation_p.F182C	NM_006950	NP_008881	P17600	SYN1_HUMAN	synapsin I isoform Ia	182	C; actin-binding and synaptic-vesicle binding.					cell junction|Golgi apparatus	actin binding|ATP binding|ligase activity|transporter activity			ovary(1)	1						GATCAGCACAAAATCCGGCTT	0.522													4	30					0	0	1	0	0	
ELK1	2002	broad.mit.edu	37	X	47500810	47500810	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47500810G>A	uc004dik.3	-	3	353	c.31C>T	c.(31-33)CTG>TTG	p.L11L	ELK1_uc010nhv.2_Silent_p.L11L|ELK1_uc010nhw.2_5'UTR|ELK1_uc004dil.3_RNA	NM_001114123	NP_001107595	P19419	ELK1_HUMAN	ELK1 protein	11	ETS.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						AGCTGCAGCAGAAACTGCCAC	0.592													32	8					0	0	1	0	0	
ZNF630	57232	broad.mit.edu	37	X	47919043	47919043	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47919043T>G	uc004div.3	-	5	1040	c.788A>C	c.(787-789)AAT>ACT	p.N263T	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Missense_Mutation_p.N139T	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	263	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						ACTACAAACATTGGGTTTCTC	0.383													24	102					0	0	1	0	0	
SSX6	280657	broad.mit.edu	37	X	47969911	47969911	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47969911A>G	uc004dix.1	+	3	236	c.114A>G	c.(112-114)GAA>GAG	p.E38E	SSX6_uc011mlv.1_Silent_p.E38E	NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						AAGAGTGGGAAAAGATGAAAT	0.403													44	13					0	0	1	0	0	
SSX6	280657	broad.mit.edu	37	X	47969923	47969923	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:47969923C>T	uc004dix.1	+	3	248	c.126C>T	c.(124-126)TTC>TTT	p.F42F	SSX6_uc011mlv.1_Silent_p.F42F	NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						AGATGAAATTCTCGGAGAAAA	0.408													43	15					0	0	1	0	0	
PQBP1	10084	broad.mit.edu	37	X	48760018	48760018	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:48760018G>A	uc004dle.2	+	6	776	c.587G>A	c.(586-588)CGA>CAA	p.R196Q	PQBP1_uc004dlf.2_Missense_Mutation_p.R196Q|PQBP1_uc004dlg.2_Missense_Mutation_p.R196Q|PQBP1_uc004dld.2_RNA|PQBP1_uc004dlh.2_Missense_Mutation_p.R196Q|PQBP1_uc004dli.2_Missense_Mutation_p.R196Q|PQBP1_uc004dlj.1_3'UTR|PQBP1_uc004dln.2_Missense_Mutation_p.R195Q|PQBP1_uc010nih.2_RNA|PQBP1_uc010nii.2_Missense_Mutation_p.R154Q|PQBP1_uc004dlk.2_Missense_Mutation_p.R101Q|PQBP1_uc004dll.2_Missense_Mutation_p.R63Q|PQBP1_uc004dlm.2_Missense_Mutation_p.R154Q|PQBP1_uc010nij.2_Missense_Mutation_p.R96Q	NM_001032382	NP_001027554	O60828	PQBP1_HUMAN	polyglutamine binding protein 1	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|transcription coactivator activity			large_intestine(1)	1						GCAGTAAGCCGAAAGGATGAA	0.562													13	9					0	0	1	0	0	
PIM2	11040	broad.mit.edu	37	X	48772563	48772563	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:48772563T>G	uc004dls.2	-	4	631	c.329A>C	c.(328-330)GAG>GCG	p.E110A		NM_006875	NP_006866	Q9P1W9	PIM2_HUMAN	serine/threonine protein kinase pim-2	110	Protein kinase.				anti-apoptosis|cell proliferation|male meiosis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|response to virus		ATP binding|protein serine/threonine kinase activity			lung(3)|stomach(1)	4						CATGAAGCCCTCCTGTGTCTC	0.597													12	8					0	0	1	0	0	
OTUD5	55593	broad.mit.edu	37	X	48791968	48791968	+	Splice_Site	SNP	C	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:48791968C>G	uc004dlu.2	-	4	986	c.925_splice	c.e4+1	p.E309_splice	OTUD5_uc004dlt.3_Intron|OTUD5_uc004dlv.2_Intron|OTUD5_uc011mmp.1_Intron	NM_017602	NP_060072	Q96G74	OTUD5_HUMAN	OTU domain containing 5 isoform a						negative regulation of type I interferon production		cysteine-type peptidase activity			pancreas(1)	1						CCCTCACCTACCCACTGCAGA	0.537													42	69					0	0	1	0	0	
OTUD5	55593	broad.mit.edu	37	X	48792100	48792100	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:48792100T>C	uc004dlu.2	-	4	855	c.794A>G	c.(793-795)GAC>GGC	p.D265G	OTUD5_uc004dlt.3_Missense_Mutation_p.D265G|OTUD5_uc004dlv.2_Missense_Mutation_p.D265G|OTUD5_uc011mmp.1_Missense_Mutation_p.D48G	NM_017602	NP_060072	Q96G74	OTUD5_HUMAN	OTU domain containing 5 isoform a	265	OTU.				negative regulation of type I interferon production		cysteine-type peptidase activity			pancreas(1)	1						GGTGGTAAAGTCCTCTGTGAC	0.488													88	153					0	0	1	0	0	
KCND1	3750	broad.mit.edu	37	X	48825826	48825826	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:48825826C>T	uc004dlx.1	-	1	2426	c.853G>A	c.(853-855)GAC>AAC	p.D285N	KCND1_uc004dlw.1_5'Flank	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	285						voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						GAGACATCGTCGTTCTTGGGC	0.592													13	5					0	0	1	0	0	
CACNA1F	778	broad.mit.edu	37	X	49081339	49081339	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:49081339G>T	uc004dnb.2	-	14	1856	c.1794C>A	c.(1792-1794)TGC>TGA	p.C598*	CACNA1F_uc010nip.2_Nonsense_Mutation_p.C587*	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	598	Helical; Name=S3 of repeat II; (Potential).|II.				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	AGACCACAAAGCAGTCAAAGC	0.562													9	5					6.40141e-05	6.56571e-05	1	1	0	
CCNB3	85417	broad.mit.edu	37	X	50052637	50052637	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:50052637A>C	uc004dox.3	+	6	1766	c.1468A>C	c.(1468-1470)ATT>CTT	p.I490L	CCNB3_uc004doy.2_Missense_Mutation_p.I490L|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	490					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GAAGCCTTTAATTTTAAAGAG	0.448													28	11					0	0	1	0	0	
CCNB3	85417	broad.mit.edu	37	X	50055601	50055601	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:50055601A>C	uc004dox.3	+	7	3690	c.3392A>C	c.(3391-3393)AAG>ACG	p.K1131T	CCNB3_uc004doy.2_Missense_Mutation_p.K1131T|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Missense_Mutation_p.K23T	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1131					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					ATGTATGCCAAGGAAATCTTC	0.388													52	19					0	0	1	0	0	
SHROOM4	57477	broad.mit.edu	37	X	50377847	50377847	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:50377847C>T	uc004dpe.2	-	4	1252	c.1226G>A	c.(1225-1227)CGC>CAC	p.R409H	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Missense_Mutation_p.R293H	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	409					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					GGCACTATGGCGATGCCCTGT	0.577													13	9					0	0	1	0	0	
MAGED1	9500	broad.mit.edu	37	X	51638836	51638836	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:51638836C>T	uc004dpm.2	+	3	828	c.733C>T	c.(733-735)CGG>TGG	p.R245W	MAGED1_uc004dpn.2_Missense_Mutation_p.R301W|MAGED1_uc004dpo.2_Missense_Mutation_p.R245W	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	245					apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					GACAATAATTCGGGGCAAGAG	0.498										Multiple Myeloma(10;0.10)			5	2					0	0	1	0	0	
HUWE1	10075	broad.mit.edu	37	X	53574690	53574690	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:53574690A>G	uc004dsp.2	-	68	10982	c.10580T>C	c.(10579-10581)GTC>GCC	p.V3527A	HUWE1_uc004dsn.2_Missense_Mutation_p.V2335A|HUWE1_uc004dsq.1_5'Flank	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3527	Thr-rich.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						AGCAGCTACGACAATGGTGGA	0.498													7	3					0	0	1	0	0	
HUWE1	10075	broad.mit.edu	37	X	53613488	53613488	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:53613488T>C	uc004dsp.2	-	39	5188	c.4786A>G	c.(4786-4788)ACA>GCA	p.T1596A	HUWE1_uc004dsn.2_Missense_Mutation_p.T421A	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1596					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GAGATGGCTGTCTTTTCATAG	0.423													12	3					0	0	1	0	0	
FAM120C	54954	broad.mit.edu	37	X	54114280	54114280	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:54114280G>T	uc004dsz.3	-	12	2628	c.2545C>A	c.(2545-2547)CCA>ACA	p.P849T	FAM120C_uc011moh.1_Intron	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	849										ovary(1)|central_nervous_system(1)	2						TAAATCCATGGACAGCAATGC	0.537													23	9					3.73988e-18	4.36426e-18	1	1	0	
FAM120C	54954	broad.mit.edu	37	X	54159186	54159186	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:54159186A>C	uc004dsz.3	-	9	2084	c.2001T>G	c.(1999-2001)AGT>AGG	p.S667R	FAM120C_uc011moh.1_Missense_Mutation_p.S667R	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	667										ovary(1)|central_nervous_system(1)	2						TCTCTGCCAGACTAAAAAGAA	0.483													10	5					0	0	1	0	0	
FGD1	2245	broad.mit.edu	37	X	54496803	54496803	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:54496803C>T	uc004dtg.2	-	4	1481	c.747G>A	c.(745-747)TCG>TCA	p.S249S	FGD1_uc011moi.1_Silent_p.S7S	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	249	Pro-rich.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CTGGTGGCTGCGAGGTTGGCT	0.677													13	2					0	0	1	0	0	
TRO	7216	broad.mit.edu	37	X	54955213	54955213	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:54955213G>A	uc004dtq.2	+	12	2163	c.2056G>A	c.(2056-2058)GAC>AAC	p.D686N	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Missense_Mutation_p.D217N|TRO_uc004dtw.2_Missense_Mutation_p.D289N|TRO_uc004dtx.2_Missense_Mutation_p.D69N	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	686					embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						CATGGATATCGACTGCCTAAC	0.274													14	5					0	0	1	0	0	
MAGEH1	28986	broad.mit.edu	37	X	55479459	55479459	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:55479459G>A	uc004dum.2	+	1	922	c.652G>A	c.(652-654)GCC>ACC	p.A218T		NM_014061	NP_054780	Q9H213	MAGH1_HUMAN	melanoma antigen, family H, 1 protein	218					apoptosis					ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GGGTTATTCCGCCCCTTAAGT	0.488													24	11					0	0	1	0	0	
SPIN3	169981	broad.mit.edu	37	X	57021144	57021144	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:57021144A>G	uc010nkj.2	-	2	523	c.237T>C	c.(235-237)AAT>AAC	p.N79N	SPIN3_uc004duu.3_Intron|SPIN3_uc004duw.3_Intron|SPIN3_uc004duv.3_Intron|SPIN3_uc004dux.1_Silent_p.N79N	NM_001010862	NP_001010862	Q5JUX0	SPIN3_HUMAN	spindlin family, member 3	79					gamete generation					ovary(1)|central_nervous_system(1)	2						ACAGAGAGGGATTTACAGGTA	0.433													88	51					0	0	1	0	0	
ZXDB	158586	broad.mit.edu	37	X	57619029	57619029	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:57619029G>A	uc004dvd.2	+	1	761	c.548G>A	c.(547-549)GGC>GAC	p.G183D		NM_007157	NP_009088	P98169	ZXDB_HUMAN	zinc finger, X-linked, duplicated B	183					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TTTGAGAACGGCGTCCTCACC	0.517													9	8					0	0	1	0	0	
FAM123B	139285	broad.mit.edu	37	X	63412011	63412011	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:63412011C>A	uc004dvo.2	-	2	1429	c.1156G>T	c.(1156-1158)GAA>TAA	p.E386*		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	386	Glu-rich.				Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						tccacctcttcttcctcttct	0.348													38	28					9.45814e-24	1.13393e-23	1	1	0	
MSN	4478	broad.mit.edu	37	X	64936689	64936689	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:64936689C>T	uc004dwf.2	+	2	220	c.22C>T	c.(22-24)CGT>TGT	p.R8C	MSN_uc010nkp.1_RNA	NM_002444	NP_002435	P26038	MOES_HUMAN	moesin	8	FERM.				leukocyte cell-cell adhesion|leukocyte migration|membrane to membrane docking	apical plasma membrane|cytoskeleton|extrinsic to membrane|microvillus membrane|nucleolus	cell adhesion molecule binding|receptor binding|structural constituent of cytoskeleton		MSN/ALK(6)	haematopoietic_and_lymphoid_tissue(6)|ovary(3)|lung(1)	10						GATCAGTGTGCGTGTGACCAC	0.532			T	ALK	ALCL								26	9					0	0	1	0	0	
IL2RG	3561	broad.mit.edu	37	X	70331290	70331290	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:70331290C>A	uc004dyw.1	-	1	114	c.100G>T	c.(100-102)GAA>TAA	p.E34*	IL2RG_uc004dyv.1_5'Flank|IL2RG_uc004dyx.1_Missense_Mutation_p.M3I	NM_000206	NP_000197	P31785	IL2RG_HUMAN	interleukin 2 receptor, gamma precursor	34	Extracellular (Potential).				immune response|interleukin-4-mediated signaling pathway|interspecies interaction between organisms	external side of plasma membrane|integral to plasma membrane	cytokine receptor activity|interleukin-2 binding			pancreas(1)	1	Renal(35;0.156)				Aldesleukin(DB00041)|Denileukin diftitox(DB00004)	GTGGTGTCTTCATTCCCATTG	0.577									Severe_Combined_Immunodeficiency_X-linked				21	7					1.28384e-07	1.34871e-07	1	1	0	
TAF1	6872	broad.mit.edu	37	X	70597031	70597031	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:70597031G>A	uc004dzu.3	+	5	752	c.701G>A	c.(700-702)CGA>CAA	p.R234Q	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.R255Q	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	234	Protein kinase 1.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				CCAGAATTTCGACCTGGAAAG	0.443													33	9					0	0	1	0	0	
TAF1	6872	broad.mit.edu	37	X	70601751	70601751	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:70601751G>A	uc004dzu.3	+	9	1567	c.1516G>A	c.(1516-1518)GAT>AAT	p.D506N	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.D527N	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	506					G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				TGATCCCAATGATGAGAACCT	0.478													34	20					0	0	1	0	0	
TAF1	6872	broad.mit.edu	37	X	70608626	70608626	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:70608626C>T	uc004dzu.3	+	17	2656	c.2605C>T	c.(2605-2607)CGT>TGT	p.R869C	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.R890C|TAF1_uc004dzv.3_Missense_Mutation_p.R43C	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	869					G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				GTCTGATTTTCGTTTACCAAC	0.433													66	16					0	0	1	0	0	
NAP1L2	4674	broad.mit.edu	37	X	72433253	72433253	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:72433253C>T	uc004ebi.2	-	1	1432	c.1076G>A	c.(1075-1077)CGA>CAA	p.R359Q	NAP1L2_uc011mqj.1_Missense_Mutation_p.R217Q	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	359					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					AGTTACAGTTCGGATTGTTCC	0.373													44	20					0	0	1	0	0	
NAP1L2	4674	broad.mit.edu	37	X	72433985	72433985	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:72433985A>C	uc004ebi.2	-	1	700	c.344T>G	c.(343-345)CTT>CGT	p.L115R	NAP1L2_uc011mqj.1_5'UTR	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	115					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					AAGCTTTTTAAGGGCTAACAC	0.398													42	27					0	0	1	0	0	
TSIX	9383	broad.mit.edu	37	X	73041814	73041814	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:73041814C>T	uc004ebn.2	+	1		c.29775C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TTTTGCTATGCGTTATCTGAG	0.338													8	5					0	0	1	0	0	
TSIX	9383	broad.mit.edu	37	X	73045047	73045047	+	RNA	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:73045047C>T	uc004ebn.2	+	1		c.33008C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						CATGTGTTTTCGTTTCTGATA	0.259													21	12					0	0	1	0	0	
TSIX	9383	broad.mit.edu	37	X	73048994	73048994	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:73048994A>G	uc004ebn.2	+	1		c.36955A>G			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						AATTTCTTGGACCTGCTGAAG	0.418													14	9					0	0	1	0	0	
XIST	7503	broad.mit.edu	37	X	73064507	73064507	+	RNA	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:73064507T>C	uc004ebm.1	-	1		c.8082A>G				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GGCTTCCTTGTCTAGTACACA	0.478													34	14					0	0	1	0	0	
XIST	7503	broad.mit.edu	37	X	73064940	73064940	+	RNA	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:73064940A>G	uc004ebm.1	-	1		c.7649T>C				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						ATGTGCAGTTACACACATTTA	0.498													66	23					0	0	1	0	0	
XIST	7503	broad.mit.edu	37	X	73067487	73067487	+	RNA	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:73067487C>A	uc004ebm.1	-	1		c.5102G>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AGACTCAGTTCTAATCAATTA	0.294													5	1					0.000602214	0.000612381	1	1	0	
RLIM	51132	broad.mit.edu	37	X	73811613	73811613	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:73811613G>A	uc004ebu.2	-	5	1827	c.1537C>T	c.(1537-1539)CGA>TGA	p.R513*	RLIM_uc004ebw.2_Nonsense_Mutation_p.R513*	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	513					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						GCCCTATGTCGACCCTCTCGC	0.448													27	12					0	0	1	0	0	
KIAA2022	340533	broad.mit.edu	37	X	73965454	73965454	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:73965454G>A	uc004eby.2	-	2	649	c.32C>T	c.(31-33)GCC>GTC	p.A11V		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	11					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GTTGGCTGAGGCAACAATAGC	0.348													15	8					0	0	1	0	0	
ATRX	546	broad.mit.edu	37	X	76938401	76938401	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:76938401T>G	uc004ecp.3	-	9	2579	c.2347A>C	c.(2347-2349)AGT>CGT	p.S783R	ATRX_uc004ecq.3_Missense_Mutation_p.S745R|ATRX_uc004eco.3_Missense_Mutation_p.S568R|ATRX_uc004ecr.2_Missense_Mutation_p.S715R|ATRX_uc010nlx.1_Missense_Mutation_p.S754R|ATRX_uc010nly.1_Missense_Mutation_p.S728R	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	783					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	GATGTAGAACTTTTTCGTTTC	0.303			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						103	52					0	0	1	0	0	
MAGT1	84061	broad.mit.edu	37	X	77096753	77096753	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:77096753T>C	uc004fof.2	-	8	1049	c.987A>G	c.(985-987)GGA>GGG	p.G329G	MAGT1_uc004fog.3_RNA	NM_032121	NP_115497	Q9H0U3	MAGT1_HUMAN	magnesium transporter 1	297					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				upper_aerodigestive_tract(1)	1						TCTTTCGCTTTCCAATATCCA	0.378													49	13					0	0	1	0	0	
DACH2	117154	broad.mit.edu	37	X	85404080	85404080	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:85404080C>T	uc004eew.2	+	1	626	c.456C>T	c.(454-456)TTC>TTT	p.F152F	DACH2_uc004eex.2_Silent_p.F152F|DACH2_uc010nmq.2_5'UTR	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	152	DACHbox-N.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						GGAAAGACTTCGAAACTTTGT	0.577													18	10					0	0	1	0	0	
KLHL4	56062	broad.mit.edu	37	X	86888822	86888822	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:86888822A>C	uc004efb.2	+	8	1805	c.1623A>C	c.(1621-1623)GAA>GAC	p.E541D	KLHL4_uc004efa.2_Missense_Mutation_p.E541D	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	541	Kelch 3.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						ATACTGTAGAAAGATGGGACC	0.408													27	20					0	0	1	0	0	
CPXCR1	53336	broad.mit.edu	37	X	88008703	88008703	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:88008703T>C	uc004efd.3	+	3	547	c.288T>C	c.(286-288)ATT>ATC	p.I96I	CPXCR1_uc004efc.3_Silent_p.I96I	NM_033048	NP_149037	Q8N123	CPXCR_HUMAN	CPX chromosome region, candidate 1	96						intracellular	zinc ion binding			ovary(3)	3						AGACCCCCATTCCCAGAAAAT	0.408													22	5					0	0	1	0	0	
PCDH19	57526	broad.mit.edu	37	X	99662442	99662442	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:99662442T>G	uc010nmz.2	-	1	2830	c.1154A>C	c.(1153-1155)CAG>CCG	p.Q385P	PCDH19_uc004efw.3_Missense_Mutation_p.Q385P|PCDH19_uc004efx.3_Missense_Mutation_p.Q385P	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	385	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CAAACGGCACTGCACACGTCC	0.607													15	77					0	0	1	0	0	
SRPX2	27286	broad.mit.edu	37	X	99920638	99920638	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:99920638C>A	uc004egb.2	+	7	1245	c.765C>A	c.(763-765)TTC>TTA	p.F255L		NM_014467	NP_055282	O60687	SRPX2_HUMAN	sushi-repeat-containing protein, X-linked 2	255	HYR.				angiogenesis|cell motility|cell-cell adhesion|positive regulation of cell migration involved in sprouting angiogenesis|regulation of phosphorylation	cytoplasm|extracellular region	receptor binding			ovary(2)	2						GCTGCAAGTTCATTGTGAAAG	0.498													140	33					1.02779e-63	1.28172e-63	1	1	0	
DRP2	1821	broad.mit.edu	37	X	100494085	100494085	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:100494085G>A	uc004egz.2	+	6	923	c.554G>A	c.(553-555)AGC>AAC	p.S185N	DRP2_uc011mrh.1_Missense_Mutation_p.S107N	NM_001939	NP_001930	Q13474	DRP2_HUMAN	dystrophin related protein 2	185					central nervous system development	cytoplasm|cytoskeleton	zinc ion binding			ovary(2)	2						CATTCTGAGAGCAAAGGTAGG	0.502													75	19					0	0	1	0	0	
NXF5	55998	broad.mit.edu	37	X	101096040	101096040	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:101096040C>T	uc011mrk.1	-	8	788	c.428G>A	c.(427-429)CGA>CAA	p.R143Q	NXF5_uc004eih.1_RNA|NXF5_uc004eii.1_RNA|NXF5_uc004eij.1_RNA|NXF5_uc004eik.1_RNA|NXF5_uc004eil.1_RNA	NM_032946	NP_116564	Q9H1B4	NXF5_HUMAN	nuclear RNA export factor 5	143					mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nucleus	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						GCAGTTTCTTCGATTCAGGAT	0.522													106	39					0	0	1	0	0	
TCEAL2	140597	broad.mit.edu	37	X	101381919	101381919	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:101381919G>T	uc004eip.2	+	3	336	c.117G>T	c.(115-117)AAG>AAT	p.K39N		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	39					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TGGAAGACAAGAAGTTAGAAA	0.373													35	15					9.8876e-21	1.16882e-20	1	1	0	
TCEAL6	158931	broad.mit.edu	37	X	101396254	101396254	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:101396254T>G	uc004eiq.2	-	3	211	c.50A>C	c.(49-51)AAG>ACG	p.K17T		NM_001006938	NP_001006939	Q6IPX3	TCAL6_HUMAN	transcription elongation factor A (SII)-like 6	17	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						atcttctggctttccctcGTT	0.204													41	10					0	0	1	0	0	
GPRASP1	9737	broad.mit.edu	37	X	101911263	101911263	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:101911263G>T	uc004ejj.3	+	5	3223	c.2422G>T	c.(2422-2424)GAA>TAA	p.E808*	GPRASP1_uc004eji.3_Nonsense_Mutation_p.E808*|GPRASP1_uc010nod.2_Nonsense_Mutation_p.E808*	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	808	Glu-rich.					cytoplasm	protein binding			ovary(1)|lung(1)	2						AGCTGAGAAAGAAGGTATTGT	0.507													118	35					9.44819e-66	1.17879e-65	1	1	0	
BHLHB9	80823	broad.mit.edu	37	X	102005180	102005180	+	Silent	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:102005180A>G	uc010nog.2	+	4	1828	c.1257A>G	c.(1255-1257)TCA>TCG	p.S419S	BHLHB9_uc011mrq.1_Silent_p.S419S|BHLHB9_uc011mrr.1_Silent_p.S419S|BHLHB9_uc011mrs.1_Silent_p.S419S|BHLHB9_uc011mrt.1_Silent_p.S419S|BHLHB9_uc004ejo.2_Silent_p.S419S|BHLHB9_uc011mru.1_Silent_p.S419S|BHLHB9_uc011mrv.1_Silent_p.S419S	NM_001142526	NP_001135998	Q6PI77	BHLH9_HUMAN	basic helix-loop-helix domain containing, class	419						cytoplasm|nucleus	binding			ovary(2)	2						CTTTGAACTCACCGGGACAGC	0.373													92	16					0	0	1	0	0	
TCEAL1	9338	broad.mit.edu	37	X	102885266	102885266	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:102885266G>T	uc004eks.2	+	3	596	c.422G>T	c.(421-423)AGA>ATA	p.R141I	TCEAL1_uc004ekt.2_Missense_Mutation_p.R141I|TCEAL1_uc004eku.2_Missense_Mutation_p.R141I	NM_001006640	NP_001006641	Q15170	TCAL1_HUMAN	transcription elongation factor A (SII)-like 1	139					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						AAAAGAGTAAGAAACAAACTG	0.303													33	11					1.56442e-22	1.86546e-22	1	1	0	
GLRA4	441509	broad.mit.edu	37	X	102962423	102962423	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:102962423T>C	uc011mse.1	-	9	1524	c.1103A>G	c.(1102-1104)GAA>GGA	p.E368G		NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	368	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						GAAACGACTTTCTTGGATGAT	0.478													28	48					0	0	1	0	0	
ZCCHC18	644353	broad.mit.edu	37	X	103359829	103359829	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:103359829C>T	uc011msh.1	+	3	2343	c.1027C>T	c.(1027-1029)CGA>TGA	p.R343*	MCART6_uc004elu.2_Intron|ZCCHC18_uc011msg.1_Intron	NM_001143978	NP_001137450	P0CG32	ZCC18_HUMAN	zinc finger, CCHC domain containing 18	343							nucleic acid binding|zinc ion binding				0						AGCCAGGAAGCGAAAATACAC	0.468													16	4					0	0	1	0	0	
IL1RAPL2	26280	broad.mit.edu	37	X	105011054	105011054	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:105011054C>T	uc004elz.1	+	11	2217	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	487	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GGAGTATTTTCGAACTGGAAA	0.388													97	27					0	0	1	0	0	
MUM1L1	139221	broad.mit.edu	37	X	105449594	105449594	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:105449594A>G	uc004emf.1	+	4	818	c.169A>G	c.(169-171)ATC>GTC	p.I57V	MUM1L1_uc004emg.1_Missense_Mutation_p.I57V	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	57										ovary(2)|pancreas(1)|skin(1)	4						AGAAACAAAGATCCTAAATAA	0.378													16	0					0	0	1	0	0	
IRS4	8471	broad.mit.edu	37	X	107976445	107976445	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:107976445G>A	uc004eoc.2	-	1	3163	c.3130C>T	c.(3130-3132)CGA>TGA	p.R1044*		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	1044						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						ACATAGATTCGACCTGTTTCA	0.488													103	20					0	0	1	0	0	
IRS4	8471	broad.mit.edu	37	X	107978696	107978696	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:107978696G>T	uc004eoc.2	-	1	912	c.879C>A	c.(877-879)TTC>TTA	p.F293L		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	293	IRS-type PTB.					plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CTACTTCCAAGAAGAAATACT	0.557													113	38					7.8952e-62	9.84436e-62	1	1	0	
GUCY2F	2986	broad.mit.edu	37	X	108638569	108638569	+	Splice_Site	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:108638569C>T	uc004eod.3	-	12	2700	c.2424_splice	c.e12+1	p.Q808_splice	GUCY2F_uc011msq.1_Splice_Site	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor						intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						AGAGTCCTTACCTGGTTAAAT	0.488													41	25					0	0	1	0	0	
GUCY2F	2986	broad.mit.edu	37	X	108638641	108638641	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:108638641G>T	uc004eod.3	-	12	2629	c.2353C>A	c.(2353-2355)CTC>ATC	p.L785I	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	785	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						ATCAGCTGGAGACATTCTGGA	0.468													130	32					2.22808e-73	2.78238e-73	1	1	0	
RGAG1	57529	broad.mit.edu	37	X	109696171	109696171	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:109696171G>T	uc004eor.1	+	3	2572	c.2326G>T	c.(2326-2328)GAC>TAC	p.D776Y	RGAG1_uc011msr.1_Missense_Mutation_p.D776Y	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	776										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GAGAACCTCAGACCCTGGAGA	0.527													100	17					2.60644e-64	3.2514e-64	1	1	0	
PAK3	5063	broad.mit.edu	37	X	110385348	110385348	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:110385348G>A	uc004epa.2	+	2	227	c.200G>A	c.(199-201)CGC>CAC	p.R67H	PAK3_uc010npt.1_Missense_Mutation_p.R67H|PAK3_uc010npu.1_Missense_Mutation_p.R67H|PAK3_uc004eoy.1_5'UTR|PAK3_uc004eoz.2_Missense_Mutation_p.R67H|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.R67H|PAK3_uc010npw.1_Missense_Mutation_p.R67H	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	67	Autoregulatory region (By similarity).|GTPase-binding (By similarity).		R -> C (in MRX30).		multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						GAGAAAGAGCGCCCAGAGATC	0.403										TSP Lung(19;0.15)			100	30					0	0	1	0	0	
PAK3	5063	broad.mit.edu	37	X	110406810	110406810	+	Silent	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:110406810T>G	uc004epa.2	+	7	693	c.666T>G	c.(664-666)GTT>GTG	p.V222V	PAK3_uc010npt.1_Silent_p.V207V|PAK3_uc010npu.1_Silent_p.V207V|PAK3_uc004eoy.1_5'UTR|PAK3_uc004eoz.2_Silent_p.V207V|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Silent_p.V243V|PAK3_uc010npw.1_Silent_p.V228V	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	222	Linker.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						GTTCTGTGGTTGAATCCATTG	0.403										TSP Lung(19;0.15)			87	34					0	0	1	0	0	
ALG13	79868	broad.mit.edu	37	X	110928252	110928252	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:110928252G>A	uc011msy.1	+	3	338	c.304G>A	c.(304-306)GAA>AAA	p.E102K	ALG13_uc004epi.1_Missense_Mutation_p.E102K|ALG13_uc011msw.1_Missense_Mutation_p.E24K|ALG13_uc011msx.1_5'UTR|ALG13_uc011msz.1_Missense_Mutation_p.E24K|ALG13_uc011mta.1_5'UTR|ALG13_uc011mtb.1_5'UTR			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	102					dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						GGTTATAAACGAAAAGTTGAT	0.383													286	67					0	0	1	0	0	
ALG13	79868	broad.mit.edu	37	X	110988113	110988113	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:110988113C>T	uc011msy.1	+	24	2947	c.2913C>T	c.(2911-2913)AGC>AGT	p.S971S	ALG13_uc011msx.1_Intron|ALG13_uc011msz.1_Silent_p.S893S|ALG13_uc011mta.1_Intron|ALG13_uc011mtb.1_Intron			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	971					dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						GTGATCCAAGCGGCAGTGATT	0.284													20	9					0	0	1	0	0	
TRPC5	7224	broad.mit.edu	37	X	111155848	111155848	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:111155848G>A	uc004epl.1	-	3	1490	c.571C>T	c.(571-573)CGC>TGC	p.R191C	TRPC5_uc004epm.1_Missense_Mutation_p.R191C	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	191	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						CGAGAGTGGCGCAGGCTGTCT	0.547													102	23					0	0	1	0	0	
HTR2C	3358	broad.mit.edu	37	X	114082759	114082759	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:114082759T>G	uc004epu.1	+	5	1271	c.543T>G	c.(541-543)ATT>ATG	p.I181M	HTR2C_uc010nqc.1_Missense_Mutation_p.I181M|HTR2C_uc004epv.1_Intron	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	181	Helical; Name=4; (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TTTGGGCAATTTCTATAGGTA	0.408													49	16					0	0	1	0	0	
LRCH2	57631	broad.mit.edu	37	X	114357648	114357648	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:114357648G>A	uc010nqe.2	-	18	1988	c.1957C>T	c.(1957-1959)CGC>TGC	p.R653C	LRCH2_uc004epz.2_Missense_Mutation_p.R636C	NM_020871	NP_065922	Q5VUJ6	LRCH2_HUMAN	leucine-rich repeats and calponin homology (CH)	653	CH.									ovary(1)	1						CTTACGTTGCGAAGTTGTCGT	0.413													28	3					0	0	1	0	0	
AGTR2	186	broad.mit.edu	37	X	115304594	115304594	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:115304594C>A	uc004eqh.3	+	3	1268	c.1061C>A	c.(1060-1062)TCT>TAT	p.S354Y		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	354	Cytoplasmic (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						AAAAGCAGTTCTCTTAGAGAA	0.428													94	24					1.45855e-51	1.81476e-51	1	1	0	
DOCK11	139818	broad.mit.edu	37	X	117805097	117805097	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:117805097C>T	uc004eqp.2	+	46	5251	c.5188C>T	c.(5188-5190)CGT>TGT	p.R1730C	DOCK11_uc004eqq.2_Missense_Mutation_p.R1509C	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1730	DHR-2.				blood coagulation	cytosol	GTP binding			ovary(3)	3						TGAGAAACGTCGTGAGTTTGA	0.338													63	19					0	0	1	0	0	
KIAA1210	57481	broad.mit.edu	37	X	118230472	118230472	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:118230472C>A	uc004era.3	-	8	1251	c.1251G>T	c.(1249-1251)AAG>AAT	p.K417N		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	417										ovary(4)|skin(1)	5						CTTGAAGGTTCTTCTTTTGTT	0.453													40	13					2.59497e-14	2.9277e-14	1	1	0	
CUL4B	8450	broad.mit.edu	37	X	119673163	119673163	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:119673163T>G	uc004esw.2	-	14	2192	c.1755A>C	c.(1753-1755)AAA>AAC	p.K585N	CUL4B_uc010nqq.2_Missense_Mutation_p.K284N|CUL4B_uc004esv.2_Missense_Mutation_p.K567N	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	585					cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						TATCCAACATTTTCTCAAGTT	0.294													15	4					0	0	1	0	0	
CUL4B	8450	broad.mit.edu	37	X	119694325	119694325	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:119694325C>A	uc004esw.2	-	3	660	c.223G>T	c.(223-225)GAC>TAC	p.D75Y	CUL4B_uc004esv.2_Missense_Mutation_p.D57Y	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	75	Ser-rich.				cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						GAATCAAAGTCTTCTCTCTCG	0.443													45	20					5.44703e-19	6.38644e-19	1	1	0	
C1GALT1C1	29071	broad.mit.edu	37	X	119760099	119760099	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:119760099A>G	uc004esy.2	-	3	1270	c.923T>C	c.(922-924)GTT>GCT	p.V308A	C1GALT1C1_uc004esz.2_Missense_Mutation_p.V308A	NM_152692	NP_689905	Q96EU7	C1GLC_HUMAN	C1GALT1-specific chaperone 1	308	Lumenal (Potential).					integral to membrane					0						AGGTAAGAAAACCAATGCATC	0.388													106	22					0	0	1	0	0	
XIAP	331	broad.mit.edu	37	X	123020225	123020225	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:123020225G>A	uc010nqu.2	+	2	839	c.713G>A	c.(712-714)CGA>CAA	p.R238Q	XIAP_uc004etx.2_Missense_Mutation_p.R238Q|XIAP_uc010nqv.2_Intron	NM_001167	NP_001158	P98170	XIAP_HUMAN	baculoviral IAP repeat-containing protein 4	238					anti-apoptosis|apoptosis|induction of apoptosis by intracellular signals|response to DNA damage stimulus	cytosol	caspase inhibitor activity|ligase activity|protein binding|zinc ion binding			ovary(1)|lung(1)	2						CTTAATATTCGAAGTGAATCT	0.408									X-linked_Lymphoproliferative_syndrome				108	24					0	0	1	0	0	
STAG2	10735	broad.mit.edu	37	X	123171427	123171427	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:123171427A>C	uc004etz.3	+	5	678	c.339A>C	c.(337-339)GCA>GCC	p.A113A	STAG2_uc004eua.2_Silent_p.A113A|STAG2_uc004eub.2_Silent_p.A113A|STAG2_uc004euc.2_Silent_p.A113A|STAG2_uc004eud.2_Silent_p.A113A|STAG2_uc004eue.2_Silent_p.A113A	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	113					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						GAGATATAGCACTTCTTGACC	0.343													112	25					0	0	1	0	0	
STAG2	10735	broad.mit.edu	37	X	123202434	123202434	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:123202434G>A	uc004etz.3	+	23	2625	c.2286G>A	c.(2284-2286)AAG>AAA	p.K762K	STAG2_uc004eua.2_Silent_p.K762K|STAG2_uc004eub.2_Silent_p.K762K|STAG2_uc004euc.2_Silent_p.K762K|STAG2_uc004eud.2_Silent_p.K762K|STAG2_uc004eue.2_Silent_p.K762K	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	762					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						TGCGTTTAAAGAAACAAATGA	0.274													66	14					0	0	1	0	0	
ODZ1	10178	broad.mit.edu	37	X	123517913	123517913	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:123517913A>C	uc004euj.2	-	29	6911	c.6847T>G	c.(6847-6849)TTG>GTG	p.L2283V	ODZ1_uc011muj.1_Missense_Mutation_p.L2289V|ODZ1_uc010nqy.2_Missense_Mutation_p.L2290V	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2283	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TGGTTGTACAAATGAGTAACT	0.458													173	48					0	0	1	0	0	
ODZ1	10178	broad.mit.edu	37	X	123538903	123538903	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:123538903G>A	uc004euj.2	-	26	5412	c.5348C>T	c.(5347-5349)TCG>TTG	p.S1783L	ODZ1_uc011muj.1_Missense_Mutation_p.S1789L|ODZ1_uc010nqy.2_Missense_Mutation_p.S1790L	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1783	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TTCAAAAGCCGAAACATTGCC	0.388													95	27					0	0	1	0	0	
ODZ1	10178	broad.mit.edu	37	X	123657246	123657246	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:123657246G>A	uc004euj.2	-	17	3065	c.3001C>T	c.(3001-3003)CCA>TCA	p.P1001S	ODZ1_uc011muj.1_Missense_Mutation_p.P1000S|ODZ1_uc010nqy.2_Missense_Mutation_p.P1001S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1001	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CCCCTCTCTGGACAGGACCCT	0.443													77	15					0	0	1	0	0	
ODZ1	10178	broad.mit.edu	37	X	123870961	123870961	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:123870961T>G	uc004euj.2	-	4	686	c.622A>C	c.(622-624)AAG>CAG	p.K208Q	ODZ1_uc011muj.1_Missense_Mutation_p.K208Q|ODZ1_uc010nqy.2_Missense_Mutation_p.K208Q	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	208	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GGGGGTGGCTTCCTGGCACAG	0.622													84	16					0	0	1	0	0	
ACTRT1	139741	broad.mit.edu	37	X	127186142	127186142	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:127186142T>C	uc004eum.2	-	1	241	c.44A>G	c.(43-45)GAC>GGC	p.D15G		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	15						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						TGAACCATTGTCAAAAATTAC	0.433													83	26					0	0	1	0	0	
SMARCA1	6594	broad.mit.edu	37	X	128599549	128599549	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:128599549C>T	uc004eun.3	-	23	3091	c.2978G>A	c.(2977-2979)CGA>CAA	p.R993Q	SMARCA1_uc004eup.3_Missense_Mutation_p.R981Q|SMARCA1_uc011muk.1_Missense_Mutation_p.R993Q|SMARCA1_uc011mul.1_Missense_Mutation_p.R981Q	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	993	SANT 2.				ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						GGGAGCATTTCGTACACACTG	0.338													122	33					0	0	1	0	0	
SMARCA1	6594	broad.mit.edu	37	X	128599864	128599864	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:128599864C>T	uc004eun.3	-	22	2887	c.2774G>A	c.(2773-2775)AGA>AAA	p.R925K	SMARCA1_uc004eup.3_Missense_Mutation_p.R913K|SMARCA1_uc011muk.1_Missense_Mutation_p.R925K|SMARCA1_uc011mul.1_Missense_Mutation_p.R913K	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	925					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						TCGTTGAATTCTTGCTTCTCC	0.338													110	33					0	0	1	0	0	
SASH3	54440	broad.mit.edu	37	X	128926655	128926655	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:128926655G>A	uc011mun.1	+	6	826	c.644G>A	c.(643-645)GGC>GAC	p.G215D	SASH3_uc004euu.2_Missense_Mutation_p.G215D|SASH3_uc011muo.1_Missense_Mutation_p.G182D	NM_018990	NP_061863	O75995	SASH3_HUMAN	SAM and SH3 domain containing 3	215	SH3.									ovary(2)|pancreas(1)	3						ACGTGGCTGGGCCTACTCAAT	0.468													72	28					0	0	1	0	0	
USP26	83844	broad.mit.edu	37	X	132159805	132159805	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:132159805C>A	uc010nrm.1	-	6	2914	c.2444G>T	c.(2443-2445)AGA>ATA	p.R815I	USP26_uc011mvf.1_Missense_Mutation_p.R815I	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	815					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					ATCATCATTTCTTTTTGTTTC	0.383													91	21					1.76421e-39	2.18546e-39	1	1	0	
CCDC160	347475	broad.mit.edu	37	X	133379644	133379644	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:133379644G>A	uc011mvj.1	+	2	1135	c.814G>A	c.(814-816)GCA>ACA	p.A272T		NM_001101357	NP_001094827	A6NGH7	CC160_HUMAN	coiled-coil domain containing 160	272	Potential.									skin(1)	1						ATTAGAAATGGCAAAGATCCG	0.378													29	3					0	0	1	0	0	
MIR450A1	554214	broad.mit.edu	37	X	133674439	133674439	+	RNA	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:133674439G>A	hsa-mir-450a-1|MI0001652	-			c.23G>A			MIR450B_hsa-mir-450b|MI0005531_5'Flank|uc011mvl.1_RNA																	0						GGAACACATCGCAAAAACAGT	0.348													41	10					0	0	1	0	0	
CXorf48	54967	broad.mit.edu	37	X	134303569	134303569	+	Silent	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:134303569A>C	uc004eyk.1	-	2	884	c.228T>G	c.(226-228)GTT>GTG	p.V76V	CXorf48_uc004eyl.1_Silent_p.V76V	NM_001031705	NP_001026875	Q8WUE5	CX048_HUMAN	hypothetical protein LOC54967 isoform 1	76											0	Acute lymphoblastic leukemia(192;0.000127)					CAACCACATTAACTTTTTGTC	0.413													28	13					0	0	1	0	0	
SAGE1	55511	broad.mit.edu	37	X	134991090	134991090	+	Silent	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:134991090C>A	uc004ezh.2	+	13	1676	c.1509C>A	c.(1507-1509)GTC>GTA	p.V503V	SAGE1_uc010nry.1_Silent_p.V472V|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	503										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					CTGATAAGGTCATATCAAATG	0.448													90	26					2.61895e-37	3.23938e-37	1	1	0	
SAGE1	55511	broad.mit.edu	37	X	134993842	134993842	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:134993842A>G	uc004ezh.2	+	18	2418	c.2251A>G	c.(2251-2253)ACA>GCA	p.T751A	SAGE1_uc010nry.1_Missense_Mutation_p.T720A|SAGE1_uc011mvv.1_Missense_Mutation_p.T375A	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	751										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GATAAATATGACAGGACATTG	0.418													167	50					0	0	1	0	0	
SAGE1	55511	broad.mit.edu	37	X	134994097	134994097	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:134994097C>T	uc004ezh.2	+	18	2673	c.2506C>T	c.(2506-2508)CGA>TGA	p.R836*	SAGE1_uc010nry.1_Nonsense_Mutation_p.R805*|SAGE1_uc011mvv.1_Nonsense_Mutation_p.R460*	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	836										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GAAAGAAGTTCGAAGGTTTGG	0.353													59	23					0	0	1	0	0	
MAP7D3	79649	broad.mit.edu	37	X	135303041	135303041	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:135303041A>C	uc004ezt.2	-	16	2460	c.2369T>G	c.(2368-2370)TTT>TGT	p.F790C	MAP7D3_uc004ezs.2_Missense_Mutation_p.F754C|MAP7D3_uc011mwc.1_Missense_Mutation_p.F772C|MAP7D3_uc010nsa.1_Missense_Mutation_p.F748C	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	790						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					ATCTTCTAGAAATACCAGCTT	0.368													247	64					0	0	1	0	0	
GPR112	139378	broad.mit.edu	37	X	135431650	135431650	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:135431650C>T	uc004ezu.1	+	6	6076	c.5785C>T	c.(5785-5787)CTA>TTA	p.L1929L	GPR112_uc010nsb.1_Silent_p.L1724L|GPR112_uc010nsc.1_Silent_p.L1696L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1929	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCAGACTGGTCTAGTATCTAA	0.413													132	28					0	0	1	0	0	
GPR112	139378	broad.mit.edu	37	X	135432563	135432563	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:135432563C>T	uc004ezu.1	+	6	6989	c.6698C>T	c.(6697-6699)TCG>TTG	p.S2233L	GPR112_uc010nsb.1_Missense_Mutation_p.S2028L|GPR112_uc010nsc.1_Missense_Mutation_p.S2000L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2233	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ACGGAAGCATCGACTTCGCCT	0.463													65	10					0	0	1	0	0	
GPR112	139378	broad.mit.edu	37	X	135443643	135443643	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:135443643G>A	uc004ezu.1	+	12	7465	c.7174G>A	c.(7174-7176)GCC>ACC	p.A2392T	GPR112_uc010nsb.1_Missense_Mutation_p.A2187T|GPR112_uc010nsc.1_Missense_Mutation_p.A2020T	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2392	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGATGAAACAGCCTCTAAATA	0.378													49	15					0	0	1	0	0	
CD40LG	959	broad.mit.edu	37	X	135741442	135741442	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:135741442C>T	uc004faa.2	+	5	726	c.654C>T	c.(652-654)TGC>TGT	p.C218C	CD40LG_uc010nsd.2_Silent_p.C197C	NM_000074	NP_000065	P29965	CD40L_HUMAN	CD40 ligand	218	Extracellular (Potential).				anti-apoptosis|B cell proliferation|inflammatory response|isotype switching|leukocyte cell-cell adhesion|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of interleukin-12 production	extracellular space|integral to plasma membrane|soluble fraction	CD40 receptor binding|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)				Atorvastatin(DB01076)	CCAAACCTTGCGGGCAACAAT	0.498									Immune_Deficiency_with_Hyper-IgM				213	70					0	0	1	0	0	
ARHGEF6	9459	broad.mit.edu	37	X	135754267	135754267	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:135754267C>A	uc004fab.2	-	20	2509	c.2047G>T	c.(2047-2049)GAT>TAT	p.D683Y	ARHGEF6_uc011mwd.1_Missense_Mutation_p.D556Y|ARHGEF6_uc011mwe.1_Missense_Mutation_p.D529Y	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	683					apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					GGAATGGAATCTTTTCGAGTA	0.438													108	27					6.17951e-33	7.59072e-33	1	1	0	
GPR101	83550	broad.mit.edu	37	X	136113696	136113696	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:136113696G>A	uc011mwh.1	-	1	138	c.138C>T	c.(136-138)TTC>TTT	p.F46F		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	46	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					TGTTGCCGACGAAAGAGGCGG	0.592													84	23					0	0	1	0	0	
MCF2	4168	broad.mit.edu	37	X	138689852	138689852	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:138689852C>A	uc004fau.2	-	12	1782	c.1488G>T	c.(1486-1488)AAG>AAT	p.K496N	MCF2_uc004fav.2_Missense_Mutation_p.K512N|MCF2_uc011mwl.1_Missense_Mutation_p.K473N|MCF2_uc010nsh.1_Missense_Mutation_p.K496N|MCF2_uc011mwm.1_Missense_Mutation_p.K457N|MCF2_uc011mwn.1_Missense_Mutation_p.K641N|MCF2_uc004faw.2_Missense_Mutation_p.K556N|MCF2_uc011mwo.1_Missense_Mutation_p.K572N	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	496	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					AAGGATACTTCTTTAAAACAT	0.378													10	46					3.07112e-06	3.18826e-06	1	1	0	
MAGEC3	139081	broad.mit.edu	37	X	140967039	140967039	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:140967039T>G	uc011mwp.1	+	3	337	c.337T>G	c.(337-339)TCT>GCT	p.S113A		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	113										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGGGAAGTTTTCTCTGAGGAG	0.547													8	9					0	0	1	0	0	
MAGEC1	9947	broad.mit.edu	37	X	140996572	140996572	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:140996572G>T	uc004fbt.2	+	4	3668	c.3382G>T	c.(3382-3384)GAA>TAA	p.E1128*	MAGEC1_uc010nsl.1_Nonsense_Mutation_p.E195*	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	1128							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GACTGCCACAGAAAGTGCAAG	0.493										HNSCC(15;0.026)			13	76					2.23348e-06	2.32221e-06	1	1	0	
SLITRK4	139065	broad.mit.edu	37	X	142718309	142718309	+	Missense_Mutation	SNP	C	T	T	rs143575705		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:142718309C>T	uc004fbx.2	-	2	992	c.616G>A	c.(616-618)GTT>ATT	p.V206I	SLITRK4_uc004fby.2_Missense_Mutation_p.V206I	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	206	Extracellular (Potential).		V -> I (in a colorectal cancer sample; somatic mutation).			integral to membrane		p.V206I(1)		upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGCAATTCAACGACACGGCCA	0.428													36	78					0	0	1	0	0	
SPANXN2	494119	broad.mit.edu	37	X	142795585	142795585	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:142795585C>T	uc004fbz.2	-	2	847	c.93G>A	c.(91-93)CCG>CCA	p.P31P		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	31										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGACCCTGTTCGGTGCCTCCT	0.403													60	14					0	0	1	0	0	
FMR1NB	158521	broad.mit.edu	37	X	147106456	147106456	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:147106456G>A	uc004fcm.2	+	5	778	c.704G>A	c.(703-705)CGA>CAA	p.R235Q		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	235	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGAAGGAAGCGAAAGAGGAAG	0.418													68	22					0	0	1	0	0	
AFF2	2334	broad.mit.edu	37	X	147743734	147743734	+	Silent	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:147743734T>C	uc004fcp.2	+	3	965	c.486T>C	c.(484-486)GAT>GAC	p.D162D	AFF2_uc004fco.2_Silent_p.D158D|AFF2_uc004fcq.2_Silent_p.D158D|AFF2_uc004fcr.2_Silent_p.D158D|AFF2_uc011mxb.1_Silent_p.D162D|AFF2_uc004fcs.2_Silent_p.D158D	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	162					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GGTCACGTGATAGTCATAACC	0.468													166	42					0	0	1	0	0	
AFF2	2334	broad.mit.edu	37	X	148038020	148038020	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:148038020C>T	uc004fcp.2	+	11	2924	c.2445C>T	c.(2443-2445)GGC>GGT	p.G815G	AFF2_uc004fcq.2_Silent_p.G805G|AFF2_uc004fcr.2_Silent_p.G776G|AFF2_uc011mxb.1_Silent_p.G780G|AFF2_uc004fcs.2_Silent_p.G782G|AFF2_uc011mxc.1_Silent_p.G456G	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	815					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GAGTACCTGGCCACAGCTCAC	0.527													90	22					0	0	1	0	0	
MAGEA11	4110	broad.mit.edu	37	X	148797493	148797493	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:148797493G>A	uc004fdq.2	+	5	449	c.347G>A	c.(346-348)AGA>AAA	p.R116K	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.R87K	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	116						cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					CTTGAGCAAAGAAGTCAGCAC	0.602													89	17					0	0	1	0	0	
PASD1	139135	broad.mit.edu	37	X	150840971	150840971	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:150840971T>C	uc004fev.3	+	14	2086	c.1754T>C	c.(1753-1755)ATA>ACA	p.I585T		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	585						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGTGCAGATATGCCTGCAA	0.333													37	106					0	0	1	0	0	
FATE1	89885	broad.mit.edu	37	X	150891227	150891227	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:150891227A>C	uc004fex.2	+	5	632	c.548A>C	c.(547-549)CAG>CCG	p.Q183P		NM_033085	NP_149076	Q969F0	FATE1_HUMAN	fetal and adult testis expressed transcript	183						endoplasmic reticulum|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TGGATGAACCAGTGATCGCCC	0.642													39	35					0	0	1	0	0	
GABRQ	55879	broad.mit.edu	37	X	151820165	151820165	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:151820165C>T	uc004ffp.1	+	8	1098	c.1078C>T	c.(1078-1080)CGC>TGC	p.R360C		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	360						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGACCTCGGCGCCAGCCTAG	0.507													143	20					0	0	1	0	0	
ATP2B3	492	broad.mit.edu	37	X	152815144	152815144	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:152815144G>A	uc004fht.1	+	9	1654	c.1528G>A	c.(1528-1530)GAC>AAC	p.D510N	ATP2B3_uc004fhs.1_Missense_Mutation_p.D510N	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	510	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TAAGATCCTCGACCTCCTGGT	0.433													75	56					0	0	1	0	0	
ABCD1	215	broad.mit.edu	37	X	153001668	153001668	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153001668C>T	uc004fif.2	+	3	1583	c.1184C>T	c.(1183-1185)GCT>GTT	p.A395V	ABCD1_uc004fig.2_5'Flank	NM_000033	NP_000024	P33897	ABCD1_HUMAN	ATP-binding cassette, sub-family D (ALD), member	395					fatty acid beta-oxidation using acyl-CoA oxidase|peroxisomal membrane transport|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|identical protein binding|peroxisomal fatty-acyl-CoA transporter activity				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTGACAGCGGCTGCAGATGCC	0.602													120	23					0	0	1	0	0	
SRPK3	26576	broad.mit.edu	37	X	153046776	153046776	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153046776G>T	uc004fil.2	+	2	197	c.165G>T	c.(163-165)CAG>CAT	p.Q55H	SRPK3_uc004fik.2_Missense_Mutation_p.Q121H|SRPK3_uc010nul.2_Missense_Mutation_p.Q13H|SRPK3_uc004fin.2_Missense_Mutation_p.Q55H|SRPK3_uc004fim.2_Missense_Mutation_p.Q55H	NM_014370	NP_055185	Q9UPE1	SRPK3_HUMAN	serine arginine rich protein-specific kinase 3	55					cell differentiation|muscle organ development|muscle tissue development		ATP binding|protein serine/threonine kinase activity			pancreas(2)|lung(1)	3	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					ACGAGGAACAGGAAGACCCCA	0.672													10	46					3.86212e-05	3.96572e-05	1	1	0	
SRPK3	26576	broad.mit.edu	37	X	153049822	153049822	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153049822C>T	uc004fil.2	+	11	1253	c.1221C>T	c.(1219-1221)ATC>ATT	p.I407I	SRPK3_uc004fik.2_Silent_p.I473I|SRPK3_uc010nul.2_Silent_p.I331I|SRPK3_uc004fin.2_Silent_p.I406I|SRPK3_uc004fim.2_Silent_p.I373I	NM_014370	NP_055185	Q9UPE1	SRPK3_HUMAN	serine arginine rich protein-specific kinase 3	407	Protein kinase.				cell differentiation|muscle organ development|muscle tissue development		ATP binding|protein serine/threonine kinase activity			pancreas(2)|lung(1)	3	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					AGATCAAGATCGCAGACCTGG	0.612													47	8					0	0	1	0	0	
L1CAM	3897	broad.mit.edu	37	X	153133495	153133495	+	Missense_Mutation	SNP	C	T	T	rs137940405		TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153133495C>T	uc004fjb.2	-	14	1894	c.1786G>A	c.(1786-1788)GAA>AAA	p.E596K	L1CAM_uc004fjc.2_Missense_Mutation_p.E596K|L1CAM_uc010nuo.2_Missense_Mutation_p.E591K	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	596	Ig-like C2-type 6.|Extracellular (Potential).				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ACATCCAGTTCGGTACTGGCC	0.622													125	22					0	0	1	0	0	
AVPR2	554	broad.mit.edu	37	X	153171980	153171980	+	Missense_Mutation	SNP	C	T	T	rs138974323	byFrequency	TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153171980C>T	uc004fjh.3	+	3	985	c.914C>T	c.(913-915)GCG>GTG	p.A305V	AVPR2_uc004fjg.3_Missense_Mutation_p.A94V|AVPR2_uc004fji.2_3'UTR	NM_000054	NP_000045	P30518	V2R_HUMAN	arginine vasopressin receptor 2 isoform 1	305	Extracellular (Potential).				activation of adenylate cyclase activity|excretion|G-protein signaling, coupled to cAMP nucleotide second messenger|hemostasis|positive regulation of gene expression|transmembrane transport|water transport	endoplasmic reticulum|endosome|Golgi apparatus|integral to plasma membrane	vasopressin receptor activity			breast(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Conivaptan(DB00872)|Terlipressin(DB02638)|Vasopressin(DB00067)	TCCACAGGGGCGCCCTTTGTG	0.627													201	48					0	0	1	0	0	
HCFC1	3054	broad.mit.edu	37	X	153228874	153228874	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153228874C>A	uc004fjp.2	-	4	1042	c.514G>T	c.(514-516)GAC>TAC	p.D172Y		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	172	Kelch 3.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ATATATAAGTCATTCAGGTAC	0.557													36	27					3.03874e-20	3.58487e-20	1	1	0	
OPN1LW	5956	broad.mit.edu	37	X	153416361	153416361	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153416361T>G	uc004fjz.3	+	2	379	c.346T>G	c.(346-348)TCT>GCT	p.S116A		NM_020061	NP_064445	P04000	OPSR_HUMAN	opsin 1 (cone pigments), long-wave-sensitive	116	Extracellular.				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GAACCAGGTCTCTGGCTACTT	0.617													42	143					0	0	1	0	0	
TKTL1	8277	broad.mit.edu	37	X	153549110	153549110	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153549110G>A	uc004fkg.2	+	8	1222	c.1036G>A	c.(1036-1038)GTG>ATG	p.V346M	TKTL1_uc011mzl.1_Missense_Mutation_p.V340M|TKTL1_uc011mzm.1_Missense_Mutation_p.V142M|TKTL1_uc004fkh.2_Missense_Mutation_p.V290M	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	346					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCAGGTGAGCGTGGCTCTGGG	0.567													99	85					0	0	1	0	0	
PLXNA3	55558	broad.mit.edu	37	X	153693557	153693557	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153693557C>T	uc004flm.2	+	11	2413	c.2240C>T	c.(2239-2241)GCC>GTC	p.A747V		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	747	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGCCAGAACGCCTCGGTGAGG	0.652													9	17					0	0	1	0	0	
GAB3	139716	broad.mit.edu	37	X	153944425	153944425	+	Silent	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153944425G>A	uc004fmj.1	-	2	300	c.252C>T	c.(250-252)TTC>TTT	p.F84F	GAB3_uc004fmk.1_Silent_p.F84F|GAB3_uc010nve.1_Silent_p.F84F|GAB3_uc004fml.1_5'UTR	NM_080612	NP_542179	Q8WWW8	GAB3_HUMAN	Gab3 protein isoform 2	84	PH.									ovary(1)	1	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAATGAACACGAAATTATTCT	0.512													233	37					0	0	1	0	0	
DKC1	1736	broad.mit.edu	37	X	153993212	153993212	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153993212C>T	uc004fmm.2	+	2	265	c.55C>T	c.(55-57)CGG>TGG	p.R19W	DKC1_uc010nvf.2_Missense_Mutation_p.R19W	NM_001363	NP_001354	O60832	DKC1_HUMAN	dyskerin isoform 1	19	Nucleolar localization.				cell proliferation|pseudouridine synthesis|rRNA processing|telomere maintenance via telomerase	Cajal body|nucleolus|telomerase holoenzyme complex	protein binding|pseudouridine synthase activity|RNA binding|telomerase activity				0	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GAAAAAGGAGCGGAAGTCATT	0.318									Congenital_Dyskeratosis				159	19					0	0	1	0	0	
DKC1	1736	broad.mit.edu	37	X	153995639	153995639	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:153995639G>A	uc004fmm.2	+	7	832	c.622G>A	c.(622-624)GAT>AAT	p.D208N	DKC1_uc010nvf.2_Missense_Mutation_p.D208N|SNORA36A_uc004fmn.2_5'Flank	NM_001363	NP_001354	O60832	DKC1_HUMAN	dyskerin isoform 1	208					cell proliferation|pseudouridine synthesis|rRNA processing|telomere maintenance via telomerase	Cajal body|nucleolus|telomerase holoenzyme complex	protein binding|pseudouridine synthase activity|RNA binding|telomerase activity				0	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GATTGAATACGATCCTGAAAG	0.443									Congenital_Dyskeratosis				74	181					0	0	1	0	0	
F8	2157	broad.mit.edu	37	X	154185408	154185408	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:154185408C>A	uc004fmt.2	-	11	1747	c.1576G>T	c.(1576-1578)GAA>TAA	p.E526*		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	526	F5/8 type A 2.|Plastocyanin-like 3.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TTGAATATTTCTCCTGGCAGA	0.378													52	169					9.90819e-18	1.15148e-17	1	1	0	
F8	2157	broad.mit.edu	37	X	154194944	154194944	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:154194944A>G	uc004fmt.2	-	8	1199	c.1028T>C	c.(1027-1029)GTC>GCC	p.V343A		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	343	Plastocyanin-like 2.|F5/8 type A 1.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GTCTACTTTGACATAAGCTTC	0.308													123	17					0	0	1	0	0	
ZFY	7544	broad.mit.edu	37	Y	2848017	2848017	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrY:2848017G>T	uc004fqj.2	+	8	2710	c.2389G>T	c.(2389-2391)GAA>TAA	p.E797*	ZFY_uc011nan.1_Nonsense_Mutation_p.E606*|ZFY_uc010nwe.2_Nonsense_Mutation_p.E720*	NM_003411	NP_003402	P08048	ZFY_HUMAN	zinc finger protein, Y-linked isoform 1	797					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACACCATAAAGAAGTTGGTCT	0.403													5	49					0.217242	0.217534	1	1	0	
TGIF2LY	90655	broad.mit.edu	37	Y	3447605	3447605	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrY:3447605G>A	uc004fqk.2	+	2	384	c.320G>A	c.(319-321)CGC>CAC	p.R107H		NM_139214	NP_631960	Q8IUE0	TF2LY_HUMAN	TGFB-induced factor homeobox 2-like, Y-linked	107	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCTCGCAGACGCATTCTCCCG	0.498													74	31					0	0	1	0	0	
USP9Y	8287	broad.mit.edu	37	Y	14898521	14898521	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrY:14898521C>A	uc004fst.1	+	24	4294	c.3349C>A	c.(3349-3351)CAC>AAC	p.H1117N	USP9Y_uc010nwu.1_RNA	NM_004654	NP_004645	O00507	USP9Y_HUMAN	ubiquitin specific protease 9, Y-linked	1117					BMP signaling pathway|protein deubiquitination|spermatogenesis|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						CTTTCAAGTTCACTTCTTGAA	0.373													41	13					2.95478e-19	3.46784e-19	1	1	0	
DDX3Y	8653	broad.mit.edu	37	Y	15026499	15026499	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrY:15026499C>A	uc004fsu.1	+	9	1006	c.697C>A	c.(697-699)CTT>ATT	p.L233I	DDX3Y_uc010nwv.1_Missense_Mutation_p.L233I|DDX3Y_uc011naq.1_Missense_Mutation_p.L233I|DDX3Y_uc004fsv.2_Missense_Mutation_p.L233I|DDX3Y_uc010nww.1_Missense_Mutation_p.L49I|DDX3Y_uc011nar.1_Missense_Mutation_p.L230I	NM_001122665	NP_001116137	O15523	DDX3Y_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,	233	Helicase ATP-binding.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|RNA binding				0						TGCAGCATTTCTTTTACCCAT	0.348													35	24					2.87052e-16	3.29392e-16	1	1	0	
NLGN4Y	22829	broad.mit.edu	37	Y	16941710	16941710	+	Silent	SNP	C	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrY:16941710C>T	uc004ftg.2	+	5	1164	c.912C>T	c.(910-912)GTC>GTT	p.V304V	NLGN4Y_uc004fte.2_Silent_p.V136V|NLGN4Y_uc011nas.1_Silent_p.V324V|NLGN4Y_uc004ftf.2_5'UTR|NLGN4Y_uc004fth.2_Silent_p.V304V	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	304	Extracellular (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						CAGACAAGGTCGGCTGCAACA	0.557													33	9					0	0	1	0	0	
RBMY2FP	159162	broad.mit.edu	37	Y	24457560	24457560	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrY:24457560G>A	uc004fvc.2	+	3	244	c.128G>A	c.(127-129)CGA>CAA	p.R43Q	RBMY1F_uc011nbh.1_Intron|RBMY1F_uc004fvd.2_Intron	NR_002193				SubName: Full=HCG1658793, isoform CRA_b; SubName: Full=Putative uncharacterized protein RBMY2FP;												0						ATAAAGGATCGAACCAGCAAA	0.353													23	8					0	0	1	0	0	
SMYD2	56950	broad.mit.edu	37	1	214491450	214491451	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr1:214491450_214491451insC	uc010ptx.1	+	4	410_411	c.377_378insC	c.(376-378)GAAfs	p.E126fs	SMYD2_uc009xdj.2_Frame_Shift_Ins_p.E34fs|SMYD2_uc010ptw.1_RNA|SMYD2_uc009xdl.1_RNA	NM_020197	NP_064582	Q9NRG4	SMYD2_HUMAN	SET and MYND domain containing 2	126					negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of DNA damage response, signal transduction by p53 class mediator|transcription, DNA-dependent	cytosol|nucleus	histone methyltransferase activity (H3-K36 specific)|p53 binding|RNA polymerase II core binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0122)|all cancers(67;0.0209)|GBM - Glioblastoma multiforme(131;0.106)|Epithelial(68;0.144)		ACACCTTCGGAAAAATTGTTAG	0.431													94	94	---	---	---	---						.
SLITRK1	114798	broad.mit.edu	37	13	84455509	84455509	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr13:84455509delT	uc001vlk.2	-	1	1020	c.134delA	c.(133-135)AAGfs	p.K45fs		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	45	LRRNT.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TGTGAAGCCCTTTTTTTCACA	0.463													44	94	---	---	---	---						.
PPP4R4	57718	broad.mit.edu	37	14	94707088	94707091	+	Frame_Shift_Del	DEL	TTTC	-	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr14:94707088_94707091delTTTC	uc001ycs.1	+	9	1086_1089	c.932_935delTTTC	c.(931-936)ATTTCTfs	p.I311fs		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	311_312						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TCAATTCTTATTTCTTTATCTTTC	0.279													12	20	---	---	---	---						.
PRRT2	112476	broad.mit.edu	37	16	29825012	29825012	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr16:29825012delG	uc002due.3	+	2	938	c.637delG	c.(637-639)GGGfs	p.G213fs	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|uc002duc.1_5'Flank|PRRT2_uc002dud.2_Frame_Shift_Del_p.G213fs|PRRT2_uc002duf.1_Frame_Shift_Del_p.G213fs|C16orf53_uc002dug.3_5'Flank	NM_145239	NP_660282	Q7Z6L0	PRRT2_HUMAN	proline-rich transmembrane protein 2	213	Extracellular (Potential).|Pro-rich.				response to biotic stimulus	integral to membrane					0						CCCAGCCAATGGGGCCCCCCC	0.642													7	16	---	---	---	---						.
MYST2	11143	broad.mit.edu	37	17	47869397	47869398	+	Splice_Site	INS	-	A	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr17:47869397_47869398insA	uc002ipm.2	+	2	289	c.163_splice	c.e2+2	p.D55_splice	MYST2_uc002ipl.1_Splice_Site_p.D55_splice|MYST2_uc010wma.1_Splice_Site_p.G55_splice|MYST2_uc010wmb.1_Splice_Site_p.D55_splice|MYST2_uc010wmc.1_Splice_Site_p.G55_splice|MYST2_uc010wmd.1_Splice_Site|MYST2_uc010wme.1_Splice_Site	NM_007067	NP_008998	O95251	MYST2_HUMAN	MYST histone acetyltransferase 2						DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	histone acetyltransferase activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						GTTCTCAAGGTAAAAAAACCTT	0.495													14	29	---	---	---	---						.
CXADRP3	440224	broad.mit.edu	37	18	14478662	14478662	+	RNA	DEL	T	-	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr18:14478662delT	uc010xai.1	-	3		c.902delA				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						AGAAGAAGCATTTTTTTACAG	0.413													20	38	---	---	---	---						.
ROCK2	9475	broad.mit.edu	37	2	11347936	11347937	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:11347936_11347937insT	uc002rbd.1	-	20	2913_2914	c.2464_2465insA	c.(2464-2466)ATGfs	p.M822fs		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	822	Potential.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		CTTTTCTGACATTTTTAGTGTG	0.342													36	71	---	---	---	---						.
TTN	7273	broad.mit.edu	37	2	179537380	179537381	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr2:179537380_179537381insT	uc010zfg.1	-	148	31157_31158	c.30933_30934insA	c.(30931-30936)AAAGAGfs	p.K10311fs	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Frame_Shift_Ins_p.K6972fs|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'Flank|TTN_uc002una.1_RNA|TTN_uc010frf.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11238_11239							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGGGTGCCTCTTTTTTCTGAA	0.361													12	25	---	---	---	---						.
KLF3	51274	broad.mit.edu	37	4	38696436	38696437	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:38696436_38696437insAA	uc003gth.3	+	5	1097_1098	c.765_766insAA	c.(763-768)AGGAAGfs	p.R255fs		NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	255_256					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						ATACTCAAAGGAAGCGGAGGAT	0.460													43	94	---	---	---	---						.
SHROOM3	57619	broad.mit.edu	37	4	77660178	77660179	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr4:77660178_77660179insT	uc011cbx.1	+	5	1805_1806	c.852_853insT	c.(850-855)GGCTCCfs	p.G284fs	SHROOM3_uc011cbz.1_Frame_Shift_Ins_p.G108fs|SHROOM3_uc003hkf.1_Frame_Shift_Ins_p.G159fs|SHROOM3_uc003hkg.2_Frame_Shift_Ins_p.G62fs	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	284_285					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			AGCGTTCAGGCTCCATGGACAA	0.540													20	42	---	---	---	---						.
TDRD6	221400	broad.mit.edu	37	6	46660415	46660416	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chr6:46660415_46660416insC	uc003oyj.2	+	1	4550_4551	c.4550_4551insC	c.(4549-4551)GAAfs	p.E1517fs	TDRD6_uc010jze.2_Frame_Shift_Ins_p.E1511fs	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1517					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			TATAATCCAGAAAAAAAAATGA	0.356													34	72	---	---	---	---						.
MIR513A1	574509	broad.mit.edu	37	X	146295032	146295032	+	RNA	DEL	A	-	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:146295032delA	hsa-mir-513a-1|MI0003191	-			c.78delA																				0						cagaaaggtgaaatttatatt	0.179													46	53	---	---	---	---						.
AFF2	2334	broad.mit.edu	37	X	148059926	148059926	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	g.chrX:148059926delT	uc004fcp.2	+	18	3990	c.3511delT	c.(3511-3513)TTTfs	p.F1171fs	AFF2_uc004fcq.2_Frame_Shift_Del_p.F1161fs|AFF2_uc004fcr.2_Frame_Shift_Del_p.F1132fs|AFF2_uc011mxb.1_Frame_Shift_Del_p.F1136fs|AFF2_uc004fcs.2_Frame_Shift_Del_p.F1136fs|AFF2_uc011mxc.1_Frame_Shift_Del_p.F812fs	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	1171					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGAGAATGTTTAAGCTGAA	0.348													128	36	---	---	---	---						.
