Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
CAMTA1	23261	broad.mit.edu	37	1	7725097	7725097	+	Silent	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:7725097C>T	uc001aoi.2	+	9	2697	c.2490C>T	c.(2488-2490)AGC>AGT	p.S830S		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	830					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		AGCAGGGTAGCCTGCAGCTGA	0.716													35	100					0	0	0.017118	0	0	
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418													14	66					0	0	0.016723	0	0	
MST1P2	11209	broad.mit.edu	37	1	16974868	16974868	+	RNA	SNP	G	T	T	rs28715800	by1000genomes	TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:16974868G>T	uc010och.1	+	7		c.1328G>T			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GTGCCAGCGCGGGTCCGCTGA	0.706													4	20					3.09899e-07	3.23672e-07	0.047766	1	0	
RSPO1	284654	broad.mit.edu	37	1	38082187	38082187	+	Silent	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:38082187G>A	uc001cbl.1	-	5	1043	c.255C>T	c.(253-255)GAC>GAT	p.D85D	RSPO1_uc001cbm.1_Silent_p.D85D|RSPO1_uc009vvf.1_Silent_p.D58D|RSPO1_uc009vvg.1_Silent_p.D85D	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	85	FU 1.				positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGTTGCGGGCGTCGAAGTATC	0.612													22	56					0	0	0.014323	0	0	
SLC2A1	6513	broad.mit.edu	37	1	43396861	43396861	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:43396861T>C	uc001cik.2	-	3	656	c.131A>G	c.(130-132)TAC>TGC	p.Y44C		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	44	Extracellular (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	TGTCTGGTTGTAGAACTCCTC	0.607											OREG0013425	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	28					0	0	0.049695	0	0	
LRRC7	57554	broad.mit.edu	37	1	70504365	70504365	+	Missense_Mutation	SNP	G	A	A	rs141932871		TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:70504365G>A	uc001dep.2	+	19	2774	c.2744G>A	c.(2743-2745)CGC>CAC	p.R915H	LRRC7_uc009wbg.2_Missense_Mutation_p.R199H|LRRC7_uc001deq.2_Missense_Mutation_p.R156H	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	915						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						ATCCACTGCCGCCCGGAATCT	0.403													29	72					0	0	0.030593	0	0	
COL11A1	1301	broad.mit.edu	37	1	103484413	103484413	+	Silent	SNP	A	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:103484413A>T	uc001dul.2	-	10	1629	c.1311T>A	c.(1309-1311)GGT>GGA	p.G437G	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Silent_p.G449G|COL11A1_uc001dun.2_Silent_p.G398G|COL11A1_uc009weh.2_Silent_p.G321G	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	437	Triple-helical region (interrupted).				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CGACAAGCATACCCTATAACA	0.328													11	57					0	0	0.013537	0	0	
NBPF9	400818	broad.mit.edu	37	1	144828599	144828599	+	Missense_Mutation	SNP	G	A	A	rs28736716		TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:144828599G>A	uc009wig.1	+	23	2720	c.2644G>A	c.(2644-2646)GGA>AGA	p.G882R	NBPF9_uc010oxn.1_Missense_Mutation_p.G780R|NBPF9_uc010oxo.1_Missense_Mutation_p.G807R|NBPF9_uc010oxr.1_Missense_Mutation_p.G909R|NBPF9_uc010oxt.1_Missense_Mutation_p.G697R|NBPF9_uc001ekg.1_Missense_Mutation_p.G209R|NBPF9_uc001ekk.1_Missense_Mutation_p.G453R|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Missense_Mutation_p.G209R|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.G542R|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	882	NBPF 7.					cytoplasm					0						CTCACTGGATGGATGTTATTC	0.463													16	209					0	0	0.019004	0	0	
HRNR	388697	broad.mit.edu	37	1	152187663	152187663	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:152187663G>A	uc001ezt.1	-	3	6518	c.6442C>T	c.(6442-6444)CGA>TGA	p.R2148*		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2148					keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATCCGTGTCGTTCACCCCTA	0.587													37	745					0	0	0.023175	0	0	
IGSF9	57549	broad.mit.edu	37	1	159912835	159912835	+	Silent	SNP	G	A	A	rs143816509		TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:159912835G>A	uc001fur.2	-	3	363	c.165C>T	c.(163-165)ATC>ATT	p.I55I	IGSF9_uc001fuq.2_Silent_p.I55I	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	55	Ig-like 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GCAGCCACTCGATGACATGCA	0.517													10	34					0	0	0.010729	0	0	
CACNA1E	777	broad.mit.edu	37	1	181767666	181767666	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:181767666C>A	uc001gow.2	+	47	6674	c.6509C>A	c.(6508-6510)TCT>TAT	p.S2170Y	CACNA1E_uc009wxs.2_Missense_Mutation_p.S2058Y|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1439Y	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2213	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCTTCCAACTCTCCGCACCCC	0.622													17	47					6.49762e-13	6.94064e-13	0.038395	1	0	
HMCN1	83872	broad.mit.edu	37	1	185946997	185946997	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:185946997A>G	uc001grq.1	+	16	2679	c.2450A>G	c.(2449-2451)CAG>CGG	p.Q817R	HMCN1_uc001grr.1_Missense_Mutation_p.Q158R	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	817	Ig-like C2-type 5.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGTTATGTTCAGGGTTATCCA	0.393													10	106					0	0	0.006214	0	0	
KCNH1	3756	broad.mit.edu	37	1	211093223	211093223	+	Silent	SNP	G	A	A	rs138866428		TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr1:211093223G>A	uc001hib.2	-	7	1391	c.1221C>T	c.(1219-1221)GAC>GAT	p.D407D	KCNH1_uc001hic.2_Silent_p.D380D	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	407	Extracellular (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TGGTGTCCTCGTCAAAGATCT	0.547													27	111					0	0	0.021523	0	0	
FRMD4A	55691	broad.mit.edu	37	10	13698676	13698676	+	Silent	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr10:13698676G>A	uc001ims.2	-	22	3265	c.2913C>T	c.(2911-2913)AGC>AGT	p.S971S	FRMD4A_uc009xjf.1_Silent_p.S971S	NM_018027	NP_060497	Q9P2Q2	FRM4A_HUMAN	FERM domain containing 4A	971	Ser-rich.					cytoplasm|cytoskeleton	binding			ovary(1)|skin(1)|pancreas(1)	3						TGGTGACCCTGCTGTGCGCCA	0.672													8	4					0	0	0.038147	0	0	
OR9Q2	219957	broad.mit.edu	37	11	57958374	57958374	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr11:57958374G>A	uc010rka.1	+	1	412	c.412G>A	c.(412-414)GAG>AAG	p.E138K		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				CATCATAACCGAGAAGGCCCG	0.547													22	84					0	0	0.055883	0	0	
TMEM138	51524	broad.mit.edu	37	11	61133663	61133663	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr11:61133663G>A	uc001nrl.1	+	3	451	c.275G>A	c.(274-276)AGC>AAC	p.S92N	TMEM138_uc010rli.1_Missense_Mutation_p.S92N|TMEM138_uc001nrm.2_Missense_Mutation_p.S92N	NM_016464	NP_057548	Q9NPI0	TM138_HUMAN	transmembrane protein 138	92	Helical; (Potential).					integral to membrane					0						TTTGCCCTCAGCATCTCCCTT	0.363													30	105					0	0	0.050027	0	0	
MAP3K11	4296	broad.mit.edu	37	11	65375465	65375465	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr11:65375465C>T	uc001oew.2	-	3	1490	c.997G>A	c.(997-999)GGC>AGC	p.G333S	MAP3K11_uc001oev.2_5'Flank|MAP3K11_uc010rol.1_Missense_Mutation_p.G76S|MAP3K11_uc001oex.1_5'UTR	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	333	Protein kinase.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						ACAGCTACGCCATAGGCCACA	0.607													11	45					0	0	0.008291	0	0	
MMP10	4319	broad.mit.edu	37	11	102643648	102643648	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr11:102643648T>C	uc001phg.1	-	8	1178	c.1156A>G	c.(1156-1158)AAA>GAA	p.K386E		NM_002425	NP_002416	P09238	MMP10_HUMAN	matrix metalloproteinase 10 preproprotein	386					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			kidney(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_epithelial(12;0.00961)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0303)|Lung(13;0.0828)|all cancers(10;0.116)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0145)		GCATCAATTTTCCTTATGGTT	0.413													49	132					0	0	0.048971	0	0	
KIAA1826	84437	broad.mit.edu	37	11	105880559	105880559	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr11:105880559A>C	uc001piy.2	-	3	914	c.741T>G	c.(739-741)CAT>CAG	p.H247Q	KIAA1826_uc001piz.2_Missense_Mutation_p.H247Q	NM_032424	NP_115800	Q8NCY6	K1826_HUMAN	hypothetical protein LOC84437	247	Potential.					nucleus				breast(1)	1		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.56e-05)|Epithelial(105;0.00432)|all cancers(92;0.0309)		GAAGCCGCTCATGTTCCATGT	0.468													40	90					0	0	0.030466	0	0	
KRT2	3849	broad.mit.edu	37	12	53045826	53045826	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr12:53045826C>T	uc001sat.2	-	1	134	c.101G>A	c.(100-102)CGG>CAG	p.R34Q		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	34	Head.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		AGTTGATCTCCGGCTTCCACC	0.517													10	18					0	0	0.006214	0	0	
ANKS1B	56899	broad.mit.edu	37	12	100200338	100200338	+	Silent	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr12:100200338G>A	uc001tge.1	-	4	930	c.513C>T	c.(511-513)TAC>TAT	p.Y171Y	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Silent_p.Y171Y	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	171	ANK 5.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TAAGCCGTCCGTAGAGTGCCG	0.488													19	52					0	0	0.043863	0	0	
FZD10	11211	broad.mit.edu	37	12	130647618	130647618	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr12:130647618A>G	uc001uii.2	+	1	587	c.131A>G	c.(130-132)GAC>GGC	p.D44G	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	44	FZ.|Extracellular (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		ATGTGCAAGGACATCGGCTAC	0.632													5	40					0	0	0.014758	0	0	
LOC284232	284232	broad.mit.edu	37	13	19409801	19409801	+	RNA	SNP	A	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr13:19409801A>T	uc010tcj.1	-	1		c.36309T>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ACTTTGATACATCTCTTTCAT	0.378													22	79					0	0	0.024334	0	0	
CCNA1	8900	broad.mit.edu	37	13	37006834	37006834	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr13:37006834G>A	uc001uvr.3	+	1	426	c.76G>A	c.(76-78)GAA>AAA	p.E26K	CCNA1_uc010teo.1_Intron|CCNA1_uc010abq.2_Intron|CCNA1_uc010abp.2_Intron|CCNA1_uc001uvs.3_Missense_Mutation_p.E26K|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	26					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		TCTCAGCTGGGAAGGACCGGG	0.552													5	14					0	0	0.021553	0	0	
LOC220429	220429	broad.mit.edu	37	13	50466218	50466218	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr13:50466218G>C	uc001vdk.2	+	1	1674	c.1492G>C	c.(1492-1494)GAA>CAA	p.E498Q		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						TAAATTTTTAGAAAAAGATCC	0.388													9	74					0	0	0.047766	0	0	
OXGR1	27199	broad.mit.edu	37	13	97639925	97639925	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr13:97639925G>A	uc001vmx.1	-	4	333	c.89C>T	c.(88-90)CCA>CTA	p.P30L	OXGR1_uc010afr.1_Missense_Mutation_p.P30L	NM_080818	NP_543008	Q96P68	OXGR1_HUMAN	oxoglutarate (alpha-ketoglutarate) receptor 1	30	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.186)			CATCTTGAGTGGGATGTTTTC	0.408													16	64					0	0	0.024245	0	0	
Unknown	0	broad.mit.edu	37	14	36840695	36840695	+	Missense_Mutation	SNP	A	G	G	rs3742593	by1000genomes	TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr14:36840695A>G	uc001wtp.2	+	1	326	c.77A>G	c.(76-78)GAT>GGT	p.D26G		NM_199286	NP_954980			stella																		TCCCGGGACGATTCAGGGGCC	0.478													4	32					0	0	0.009096	0	0	
RRN3P3	100131998	broad.mit.edu	37	16	22441236	22441236	+	RNA	SNP	G	A	A	rs114681793	by1000genomes	TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr16:22441236G>A	uc002dkp.2	-	5		c.1170C>T			RRN3P3_uc010vbu.1_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						TGTTCCTCTCGATGATGGTGT	0.507													10	47					0	0	0.006214	0	0	
CCDC102A	92922	broad.mit.edu	37	16	57552022	57552022	+	Silent	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr16:57552022G>A	uc002elw.2	-	6	1419	c.1206C>T	c.(1204-1206)TGC>TGT	p.C402C		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	402										ovary(1)	1						CCCTCAGGTCGCAGTCCAGTG	0.687													18	112					0	0	0.038395	0	0	
COX4NB	10328	broad.mit.edu	37	16	85813362	85813362	+	Silent	SNP	A	G	G			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr16:85813362A>G	uc002fjd.2	-	5	832	c.585T>C	c.(583-585)AAT>AAC	p.N195N	COX4NB_uc010vol.1_3'UTR	NM_006067	NP_006058	O43402	CX4NB_HUMAN	COX4 neighbor isoform 1	195						mitochondrion|nucleus					0						TTGTCCAGTCATTCCGAATGT	0.547													10	58					0	0	0.006214	0	0	
Unknown	0	broad.mit.edu	37	16	90161609	90161609	+	Missense_Mutation	SNP	A	G	G	rs139928438	by1000genomes	TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr16:90161609A>G	uc002fqp.2	+	3	962	c.484A>G	c.(484-486)AGT>GGT	p.S162G	uc002fqq.2_Missense_Mutation_p.S179G					Homo sapiens, Similar to tubulin, beta, 2, clone IMAGE:4873024, mRNA.																		TGATGGAGTCAGTGATGGACG	0.617													3	17					0	0	0.004672	0	0	
MAP2K4	6416	broad.mit.edu	37	17	11984671	11984671	+	Splice_Site	SNP	A	G	G			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr17:11984671A>G	uc002gnj.2	+	3	288	c.219_splice	c.e3-2	p.I73_splice	MAP2K4_uc002gnk.2_Splice_Site_p.I84_splice|MAP2K4_uc010vvi.1_Splice_Site|MAP2K4_uc010vvj.1_Intron|MIR744_hsa-mir-744|MI0005559_5'Flank	NM_003010	NP_003001	P45985	MP2K4_HUMAN	mitogen-activated protein kinase kinase 4						cellular response to mechanical stimulus|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|JUN kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			large_intestine(14)|breast(12)|lung(8)|ovary(8)|pancreas(8)|stomach(2)|central_nervous_system(1)|biliary_tract(1)|testis(1)|endometrium(1)|urinary_tract(1)|skin(1)	58		all_cancers(5;0.0413)|Breast(5;0.000625)|all_epithelial(5;0.00978)|all_lung(20;0.0449)|Lung NSC(33;0.163)		Epithelial(2;4.12e-09)|all cancers(2;6.86e-07)|BRCA - Breast invasive adenocarcinoma(2;8.74e-07)|Colorectal(4;5.32e-05)|COAD - Colon adenocarcinoma(4;0.0039)|READ - Rectum adenocarcinoma(10;0.0681)		ATATTTTAACAGAGAGAGACT	0.353			D|Mis|N		pancreatic|breast|colorectal								16	41					0	0	0.028581	0	0	
TBC1D26	353149	broad.mit.edu	37	17	15641610	15641610	+	Missense_Mutation	SNP	A	G	G	rs146288175	by1000genomes	TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr17:15641610A>G	uc010cov.2	+	7	546	c.296A>G	c.(295-297)TAC>TGC	p.Y99C	TBC1D26_uc010cou.1_Missense_Mutation_p.Y99C|TBC1D26_uc002gpb.3_RNA	NM_178571	NP_848666	Q86UD7	TBC26_HUMAN	TBC1 domain family, member 26	99						intracellular	Rab GTPase activator activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.078)		CAAAGAGTATACAAAGTCATT	0.527													4	29					0	0	0.008291	0	0	
FLJ36000	284124	broad.mit.edu	37	17	21904125	21904125	+	RNA	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr17:21904125G>A	uc002gza.2	+	1		c.64G>A				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ggagtcgcaaggggccgagca	0													4	42					0	0	0.014758	0	0	
KRT28	162605	broad.mit.edu	37	17	38953169	38953169	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr17:38953169G>A	uc002hvh.1	-	5	1043	c.977C>T	c.(976-978)ACG>ATG	p.T326M		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	326	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				GTCACCTACCGTGGCCATCAG	0.572													20	66					0	0	0.012319	0	0	
LPO	4025	broad.mit.edu	37	17	56326514	56326514	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr17:56326514C>G	uc002ivt.2	+	5	735	c.419C>G	c.(418-420)ACC>AGC	p.T140S	LPO_uc010dco.2_Missense_Mutation_p.T140S|LPO_uc010wnr.1_Missense_Mutation_p.T57S|LPO_uc010wns.1_Missense_Mutation_p.T81S|LPO_uc010dcp.2_Missense_Mutation_p.T57S|LPO_uc010dcq.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	140					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						CCTTACCGCACCATTACGGGA	0.637													39	41					0	0	0.019004	0	0	
C17orf71	55181	broad.mit.edu	37	17	57290373	57290373	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr17:57290373C>A	uc002ixi.2	+	3	2231	c.2189C>A	c.(2188-2190)ACT>AAT	p.T730N		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	730					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					GAAGTGAAAACTGAGAAGAGG	0.458													91	167					9.35349e-44	1.03439e-43	0.048971	1	0	
DLGAP1	9229	broad.mit.edu	37	18	3729181	3729181	+	Silent	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr18:3729181C>T	uc002kmf.2	-	4	1612	c.1545G>A	c.(1543-1545)TCG>TCA	p.S515S	DLGAP1_uc010wyz.1_Silent_p.S515S|DLGAP1_uc002kme.1_Silent_p.S213S|DLGAP1_uc010dkn.2_Silent_p.S213S|DLGAP1_uc010wyw.1_Silent_p.S221S|DLGAP1_uc010wyx.1_Silent_p.S227S|DLGAP1_uc010wyy.1_Silent_p.S227S|DLGAP1_uc002kmg.2_Silent_p.S213S|DLGAP1_uc002kmk.2_Silent_p.S515S	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	515					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				TGCGCGGCGGCGAGGACGACC	0.677													13	19					0	0	0.016723	0	0	
APC2	10297	broad.mit.edu	37	19	1466023	1466023	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr19:1466023G>A	uc002lsr.1	+	15	2931	c.2723G>A	c.(2722-2724)CGG>CAG	p.R908Q	APC2_uc002lss.1_Missense_Mutation_p.R490Q|APC2_uc002lst.1_Missense_Mutation_p.R908Q|APC2_uc002lsu.1_Missense_Mutation_p.R907Q|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	908					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAGGAAGCCGGGCGCACCCG	0.741													3	3					0	0	0.004672	0	0	
CACNA1A	773	broad.mit.edu	37	19	13409734	13409734	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr19:13409734C>T	uc010dze.2	-	19	2952	c.2716G>A	c.(2716-2718)GCC>ACC	p.A906T	CACNA1A_uc010dzc.2_Missense_Mutation_p.A431T|CACNA1A_uc002mwy.3_Missense_Mutation_p.A905T|CACNA1A_uc010xne.1_Missense_Mutation_p.A434T	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	906	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CCCTCCCGGGCGTGGTGGTCC	0.776													5	7					0	0	0.014758	0	0	
YIF1B	90522	broad.mit.edu	37	19	38799964	38799964	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr19:38799964T>A	uc002ohz.2	-	3	351	c.302A>T	c.(301-303)GAC>GTC	p.D101V	YIF1B_uc002ohw.2_Missense_Mutation_p.D70V|YIF1B_uc002ohx.2_Missense_Mutation_p.D86V|YIF1B_uc010xtx.1_Missense_Mutation_p.D84V|YIF1B_uc010xty.1_Missense_Mutation_p.D70V|YIF1B_uc002oia.2_Missense_Mutation_p.D98V|YIF1B_uc002ohy.2_Missense_Mutation_p.D98V|YIF1B_uc002oib.2_Missense_Mutation_p.D98V	NM_001039672	NP_001034761	Q5BJH7	YIF1B_HUMAN	Yip1 interacting factor homolog B isoform 5	101	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(60;1.07e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GATGAAGCGGTCGATCTGGGG	0.587													33	115					0	0	0.041601	0	0	
KCNF1	3754	broad.mit.edu	37	2	11053671	11053671	+	Silent	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr2:11053671C>T	uc002rax.2	+	1	1609	c.1119C>T	c.(1117-1119)TAC>TAT	p.Y373Y		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	373	Selectivity filter (By similarity).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		CCGTCGGCTACGGCGACATCT	0.602													35	40					0	0	0.021022	0	0	
QPCT	25797	broad.mit.edu	37	2	37586990	37586990	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr2:37586990C>T	uc002rqg.2	+	3	657	c.535C>T	c.(535-537)CTT>TTT	p.L179F	QPCT_uc002rqh.2_Missense_Mutation_p.L130F	NM_012413	NP_036545	Q16769	QPCT_HUMAN	glutaminyl-peptide cyclotransferase precursor	179					peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|proteolysis	extracellular region	acyltransferase activity|glutaminyl-peptide cyclotransferase activity|peptidase activity|zinc ion binding			central_nervous_system(1)	1		Ovarian(717;0.051)|all_hematologic(82;0.21)				CAAGAAACTCCTTTCCTTAAA	0.413													93	83					0	0	0.048971	0	0	
NEB	4703	broad.mit.edu	37	2	152404896	152404896	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr2:152404896C>T	uc010fnx.2	-	103	15171	c.14980G>A	c.(14980-14982)GCA>ACA	p.A4994T	NEB_uc002txr.2_Missense_Mutation_p.A1417T	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4994					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TACCCATATGCCTTGGTGTGT	0.433													12	54					0	0	0.013537	0	0	
TTN	7273	broad.mit.edu	37	2	179622343	179622343	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr2:179622343C>A	uc010zfi.1	-	44	10690	c.10466G>T	c.(10465-10467)GGG>GTG	p.G3489V	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133432	NP_597676	Q8WZ42	TITIN_HUMAN	titin isoform novex-1	3571							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGAGTACTGCCCAGCATGCTC	0.458													61	50					6.3091e-27	6.81673e-27	0.048971	1	0	
CPXM1	56265	broad.mit.edu	37	20	2774876	2774876	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr20:2774876A>C	uc002wgu.2	-	14	2229	c.2165T>G	c.(2164-2166)CTT>CGT	p.L722R	CPXM1_uc010gas.2_Missense_Mutation_p.L648R	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	722					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						GCGCCTGCGAAGGTCCGGGGG	0.617													20	86					0	0	0.049695	0	0	
NAA20	51126	broad.mit.edu	37	20	20013784	20013784	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr20:20013784T>C	uc002wrp.2	+	6	594	c.490T>C	c.(490-492)TCC>CCC	p.S164P	NAA20_uc002wrq.2_3'UTR|NAA20_uc002wrr.2_Missense_Mutation_p.S152P	NM_016100	NP_057184	P61599	NAA20_HUMAN	N-acetyltransferase 5 isoform a	164						cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity				0						TGAGAAGAAATCCATCATACC	0.363													27	95					0	0	0.027356	0	0	
NDRG3	57446	broad.mit.edu	37	20	35317165	35317165	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr20:35317165T>C	uc002xfw.2	-	4	198	c.116A>G	c.(115-117)CAT>CGT	p.H39R	NDRG3_uc002xfx.2_Missense_Mutation_p.H27R|NDRG3_uc010zvq.1_Intron|NDRG3_uc010zvr.1_Intron	NM_032013	NP_114402	Q9UGV2	NDRG3_HUMAN	N-myc downstream regulated gene 3 isoform a	39					cell differentiation|negative regulation of cell growth|spermatogenesis	cytoplasm				ovary(1)	1		Myeloproliferative disorder(115;0.00878)				GACCACACCATGAGTTGTTTC	0.378													11	151					0	0	0.013537	0	0	
WISP2	8839	broad.mit.edu	37	20	43355838	43355838	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr20:43355838C>T	uc002xmn.2	+	5	996	c.643C>T	c.(643-645)CGG>TGG	p.R215W	uc002xml.1_Intron|uc002xmm.1_Intron|WISP2_uc002xmp.2_Missense_Mutation_p.R215W|WISP2_uc002xmq.2_Silent_p.P132P	NM_003881	NP_003872	O76076	WISP2_HUMAN	WNT1 inducible signaling pathway protein 2	215	TSP type-1.				cell adhesion|cell-cell signaling|signal transduction	extracellular region|soluble fraction	insulin-like growth factor binding			skin(1)	1		Myeloproliferative disorder(115;0.0122)				CATGGCCACCCGGGTGTCCAA	0.677													29	69					0	0	0.030593	0	0	
SAMSN1	64092	broad.mit.edu	37	21	15893509	15893509	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr21:15893509G>A	uc002yju.1	-	2	173	c.91C>T	c.(91-93)CGG>TGG	p.R31W	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Missense_Mutation_p.R99W	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	31					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		GAATTATTCCGAAAACGATCG	0.299													12	27					0	0	0.016723	0	0	
SMARCB1	6598	broad.mit.edu	37	22	24167535	24167535	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr22:24167535T>G	uc002zyb.2	+	7	1126	c.919T>G	c.(919-921)TTT>GTT	p.F307V	SMARCB1_uc002zya.2_Intron|SMARCB1_uc002zyc.2_Missense_Mutation_p.F298V|SMARCB1_uc002zyd.2_Missense_Mutation_p.F316V	NM_003073	NP_003064	Q12824	SNF5_HUMAN	SWI/SNF related, matrix associated, actin	307	Interaction with PPP1R15A.|2.|2 X approximate tandem repeats.				cell cycle|chromatin remodeling|DNA integration|interspecies interaction between organisms|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|retroviral genome replication|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleolus|nucleoplasm|SWI/SNF complex	p53 binding	p.?(6)|p.L266_*386del(1)		soft_tissue(193)|central_nervous_system(172)|haematopoietic_and_lymphoid_tissue(23)|meninges(5)|skin(5)|bone(4)|ovary(2)|endometrium(1)|lung(1)|pancreas(1)	407		Medulloblastoma(6;2.2e-09)|all_neural(6;2.73e-05)				GGGCGGGGAGTTTGTCACCAC	0.562			D|N|F|S		malignant rhabdoid 	malignant rhabdoid			Rhabdoid_Predisposition_syndrome|Schwannomatosis				19	42					0	0	0.038395	0	0	
CACNA1I	8911	broad.mit.edu	37	22	40037114	40037114	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr22:40037114C>T	uc003ayc.2	+	6	983	c.983C>T	c.(982-984)ACG>ATG	p.T328M	CACNA1I_uc003ayd.2_Missense_Mutation_p.T328M|CACNA1I_uc003aye.2_Missense_Mutation_p.T243M|CACNA1I_uc003ayf.2_Missense_Mutation_p.T243M	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	328	I.|Extracellular (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GTGTGCCGCACGGGCAGCGCC	0.592													14	61					0	0	0.016723	0	0	
ZC3H7B	23264	broad.mit.edu	37	22	41739432	41739432	+	Silent	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr22:41739432C>T	uc003azw.2	+	13	1527	c.1311C>T	c.(1309-1311)GGC>GGT	p.G437G	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	453					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						CCCGGGCTGGCGACTACACCT	0.632													10	65					0	0	0.008291	0	0	
KLHDC7B	113730	broad.mit.edu	37	22	50987858	50987858	+	Silent	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr22:50987858C>T	uc003bmi.2	+	1	1397	c.1263C>T	c.(1261-1263)TAC>TAT	p.Y421Y		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	421	Kelch 3.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TGGAGTGCTACGACCCGCGAA	0.677													36	73					0	0	0.021022	0	0	
CELSR3	1951	broad.mit.edu	37	3	48668088	48668088	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr3:48668088G>T	uc003cuf.1	-	46	11415	c.11415C>A	c.(11413-11415)TGC>TGA	p.C3805*	SLC26A6_uc003cug.2_Nonsense_Mutation_p.C379*|SLC26A6_uc003cuh.2_Nonsense_Mutation_p.C400*|SLC26A6_uc010hke.2_Nonsense_Mutation_p.C251*|SLC26A6_uc003cuk.2_Nonsense_Mutation_p.C293*|SLC26A6_uc003cui.2_Nonsense_Mutation_p.C400*|SLC26A6_uc003cuj.2_Nonsense_Mutation_p.C400*|SLC26A6_uc011bbp.1_Nonsense_Mutation_p.C364*	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GAGACATAGAGCAACTCACGG	0.527													3	8					0.004672	0.00472224	0.004672	1	0	
MINA	84864	broad.mit.edu	37	3	97686239	97686239	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr3:97686239G>A	uc003drz.1	-	2	705	c.199C>T	c.(199-201)CAG>TAG	p.Q67*	MINA_uc003dsa.1_Nonsense_Mutation_p.Q67*|MINA_uc003dsb.1_Nonsense_Mutation_p.Q67*|MINA_uc003dsc.1_Nonsense_Mutation_p.Q67*|MINA_uc010hpa.1_RNA|MINA_uc010hpb.1_Intron	NM_001042533	NP_001035998	Q8IUF8	MINA_HUMAN	MYC induced nuclear antigen isoform a	67					ribosome biogenesis	cytoplasm|nucleolus				ovary(1)	1						TCATCTCTCTGAATGAGAAGG	0.468													44	163					0	0	0.033182	0	0	
MYH15	22989	broad.mit.edu	37	3	108129642	108129642	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr3:108129642C>T	uc003dxa.1	-	32	4400	c.4343G>A	c.(4342-4344)CGC>CAC	p.R1448H		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1448	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TGCTGCAGAGCGGACCTTCCC	0.652													14	49					0	0	0.016723	0	0	
EPHA5	2044	broad.mit.edu	37	4	66467874	66467874	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr4:66467874A>C	uc003hcy.2	-	3	588	c.395T>G	c.(394-396)TTT>TGT	p.F132C	EPHA5_uc003hcx.2_Missense_Mutation_p.F63C|EPHA5_uc003hcz.2_Missense_Mutation_p.F132C|EPHA5_uc011cah.1_Missense_Mutation_p.F132C|EPHA5_uc011cai.1_Missense_Mutation_p.F132C|EPHA5_uc003hda.2_Missense_Mutation_p.F132C	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	132	Extracellular (Potential).				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						CCGCAGGGTAAATTTGAGTTC	0.428										TSP Lung(17;0.13)			20	79					0	0	0.043863	0	0	
UNC5C	8633	broad.mit.edu	37	4	96127865	96127865	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr4:96127865C>T	uc003htp.1	-	11	1970	c.1816G>A	c.(1816-1818)GTC>ATC	p.V606I	UNC5C_uc010ilc.1_Missense_Mutation_p.V625I	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	606	Cytoplasmic (Potential).|ZU5.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		ATAGTGAGGACGACTGGGCGG	0.592													23	25					0	0	0.016522	0	0	
PRMT10	90826	broad.mit.edu	37	4	148575375	148575375	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr4:148575375T>C	uc003ilc.2	-	9	1815	c.1673A>G	c.(1672-1674)GAT>GGT	p.D558G	PRMT10_uc003ilb.2_Missense_Mutation_p.D202G|PRMT10_uc003ild.2_Missense_Mutation_p.D445G	NM_138364	NP_612373	Q6P2P2	ANM10_HUMAN	protein arginine methyltransferase 10	558						cytoplasm	binding|protein methyltransferase activity			ovary(1)|central_nervous_system(1)	2						ACAGTGAGTATCCATGGTCTG	0.413													53	41					0	0	0.048971	0	0	
WDR17	116966	broad.mit.edu	37	4	177095813	177095813	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr4:177095813A>C	uc003iuj.2	+	28	3666	c.3510A>C	c.(3508-3510)TTA>TTC	p.L1170F	WDR17_uc003iuk.2_Missense_Mutation_p.L1146F|WDR17_uc003ium.3_Missense_Mutation_p.L1131F|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Missense_Mutation_p.L381F	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	1170										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		TTGGTGCATTACTGGCTATCA	0.333													42	34					0	0	0.048971	0	0	
IRF2	3660	broad.mit.edu	37	4	185339369	185339369	+	Splice_Site	SNP	T	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr4:185339369T>A	uc003iwf.3	-	5	565	c.365_splice	c.e5-1	p.G122_splice		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2						blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		GTTTCTTTCCTGTGGCAACAA	0.373													34	58					0	0	0.050027	0	0	
CDH12	1010	broad.mit.edu	37	5	21854857	21854857	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr5:21854857G>A	uc010iuc.2	-	4	1027	c.569C>T	c.(568-570)CCG>CTG	p.P190L	CDH12_uc011cno.1_Intron|CDH12_uc003jgk.2_Missense_Mutation_p.P190L	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	190	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TCCATAGGTCGGGTCATCTGC	0.403										HNSCC(59;0.17)			26	47					0	0	0.021523	0	0	
PCDH1	5097	broad.mit.edu	37	5	141243873	141243873	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr5:141243873G>C	uc003llq.2	-	3	2140	c.2023C>G	c.(2023-2025)CGA>GGA	p.R675G	PCDH1_uc003llp.2_Missense_Mutation_p.R675G|PCDH1_uc011dbf.1_Missense_Mutation_p.R653G	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	675	Extracellular (Potential).|Cadherin 6.				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		TGTTGCTCTCGATCAAAGCTC	0.557													27	40					0	0	0.027356	0	0	
PDE6A	5145	broad.mit.edu	37	5	149276316	149276316	+	Silent	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr5:149276316C>T	uc003lrg.3	-	11	1551	c.1431G>A	c.(1429-1431)AAG>AAA	p.K477K		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	477					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CCCATGGCTCCTTCCCATACA	0.522													49	105					0	0	0.048971	0	0	
DDR1	780	broad.mit.edu	37	6	30856549	30856549	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr6:30856549G>T	uc003nrr.2	+	3	302	c.43G>T	c.(43-45)GTG>TTG	p.V15L	DDR1_uc010jse.2_Missense_Mutation_p.V15L|DDR1_uc003nrq.2_Missense_Mutation_p.V15L|DDR1_uc003nrs.2_Missense_Mutation_p.V15L|DDR1_uc003nrt.2_Missense_Mutation_p.V15L|DDR1_uc011dms.1_Missense_Mutation_p.V33L|DDR1_uc011dmt.1_Missense_Mutation_p.V41L|DDR1_uc003nru.2_Missense_Mutation_p.V15L|DDR1_uc011dmu.1_Missense_Mutation_p.V15L|DDR1_uc003nrv.2_Missense_Mutation_p.V15L|DDR1_uc003nrw.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	15					cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	GCTGCTCTTGGTGGCAAGTGG	0.567													8	35					0.000157383	0.000162572	0.038147	1	0	
ITPR3	3710	broad.mit.edu	37	6	33638163	33638163	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr6:33638163A>C	uc011drk.1	+	19	2470	c.2251A>C	c.(2251-2253)ATC>CTC	p.I751L		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	751	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						CATCGACGAGATCTCCCAGCA	0.607													22	78					0	0	0.014323	0	0	
ZNF318	24149	broad.mit.edu	37	6	43333179	43333179	+	Splice_Site	SNP	C	G	G			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr6:43333179C>G	uc003oux.2	-	2	478	c.400_splice	c.e2-1	p.R134_splice	ZNF318_uc003ouw.2_Splice_Site	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318						meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			GAGAGCGTCTCTACAAAAGTA	0.408													8	52					0	0	0.038147	0	0	
PSMB1	5689	broad.mit.edu	37	6	170862307	170862307	+	Nonsense_Mutation	SNP	A	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr6:170862307A>T	uc011ehe.1	-	1	111	c.24T>A	c.(22-24)TAT>TAA	p.Y8*	PSMB1_uc003qxq.2_RNA|PSMB1_uc003qxr.2_5'Flank|TBP_uc003qxt.2_5'Flank|TBP_uc003qxu.2_5'Flank|TBP_uc011ehf.1_5'Flank	NM_002793	NP_002784	P20618	PSB1_HUMAN	proteasome beta 1 subunit precursor	8					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cell junction|cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.0563)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;7.5e-23)|BRCA - Breast invasive adenocarcinoma(81;4.88e-06)|GBM - Glioblastoma multiforme(31;0.00643)	Bortezomib(DB00188)	CAGGAGCCGAATACATGGCTG	0.597													3	15					0	0	0.004672	0	0	
POM121	9883	broad.mit.edu	37	7	72413896	72413896	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr7:72413896A>G	uc003twk.2	+	11	3364	c.3364A>G	c.(3364-3366)ACC>GCC	p.T1122A	POM121_uc003twj.2_Missense_Mutation_p.T857A|POM121_uc010lam.1_Missense_Mutation_p.T857A	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1122	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				AGGCTCCAGCACCACCACCGG	0.637													5	54					0	0	0.014758	0	0	
GIMAP5	55340	broad.mit.edu	37	7	150439921	150439921	+	Silent	SNP	A	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr7:150439921A>C	uc003whr.1	+	3	1046	c.694A>C	c.(694-696)AGA>CGA	p.R232R	GIMAP5_uc010lpu.2_Silent_p.R90R	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	232	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCTGCTCCAAAGAACTGGAGC	0.592													15	63					0	0	0.024245	0	0	
OPRK1	4986	broad.mit.edu	37	8	54142312	54142312	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr8:54142312C>T	uc003xrh.1	-	3	1063	c.688G>A	c.(688-690)GTC>ATC	p.V230I	OPRK1_uc003xri.1_Missense_Mutation_p.V230I|OPRK1_uc010lyc.1_Missense_Mutation_p.V141I	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	230	Helical; Name=5; (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	AAGATGAAGACGCAGATCTTC	0.527													25	55					0	0	0.027356	0	0	
TRHR	7201	broad.mit.edu	37	8	110100010	110100010	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr8:110100010C>T	uc003ymz.3	+	1	285	c.269C>T	c.(268-270)TCC>TTC	p.S90F		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	90	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			ATCTACGGTTCCTGGGTCTAT	0.498													42	119					0	0	0.036044	0	0	
RG9MTD3	158234	broad.mit.edu	37	9	37762114	37762114	+	Silent	SNP	G	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr9:37762114G>A	uc004aai.2	+	2	263	c.186G>A	c.(184-186)TCG>TCA	p.S62S	RG9MTD3_uc011lqo.1_Silent_p.S62S|RG9MTD3_uc011lqp.1_Silent_p.S62S|RG9MTD3_uc011lqq.1_Missense_Mutation_p.R33Q|RG9MTD3_uc004aaj.2_RNA|RG9MTD3_uc004aak.2_Missense_Mutation_p.G4S	NM_144964	NP_659401	Q6PF06	RG9D3_HUMAN	RNA (guanine-9-) methyltransferase domain	62							methyltransferase activity				0				GBM - Glioblastoma multiforme(29;0.00817)|Lung(182;0.226)		CATGGTGCTCGGTGAGTGCGT	0.527													4	20					0	0	0.009096	0	0	
GRIN3A	116443	broad.mit.edu	37	9	104433226	104433226	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr9:104433226C>A	uc004bbp.1	-	3	2069	c.1468G>T	c.(1468-1470)GTC>TTC	p.V490F	GRIN3A_uc004bbq.1_Missense_Mutation_p.V490F	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	490	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TAGTCCATGACAATCTTTCCC	0.498													65	139					7.59065e-32	8.29675e-32	0.048971	1	0	
DFNB31	25861	broad.mit.edu	37	9	117186780	117186780	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr9:117186780C>A	uc004biz.3	-	6	1899	c.1250G>T	c.(1249-1251)AGC>ATC	p.S417I	DFNB31_uc004bix.2_Missense_Mutation_p.S66I|DFNB31_uc004biy.3_Missense_Mutation_p.S34I|DFNB31_uc004bja.3_Missense_Mutation_p.S417I	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	417					inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GTTCCCCAGGCTGCTCAGGGT	0.582													9	19					2.74318e-10	2.89729e-10	0.006214	1	0	
GUCY2F	2986	broad.mit.edu	37	X	108718759	108718759	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chrX:108718759G>C	uc004eod.3	-	2	683	c.407C>G	c.(406-408)TCG>TGG	p.S136W	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	136	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TCCCAGGAGCGAGGCTGCCTC	0.498											OREG0019905	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	60	145					0	0	0.048971	0	0	
HNRPDL	9987	broad.mit.edu	37	4	83348624	83348625	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr4:83348624_83348625insT	uc003hmr.2	-	4	1402_1403	c.867_868insA	c.(865-870)AAATTGfs	p.K289fs	HNRPDL_uc003hmq.2_RNA|HNRPDL_uc003hms.2_RNA|HNRPDL_uc003hmt.2_Frame_Shift_Ins_p.K289fs	NM_031372	NP_112740	O14979	HNRDL_HUMAN	heterogeneous nuclear ribonucleoprotein D-like	289_290	RRM 2.				regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|heterogeneous nuclear ribonucleoprotein complex	double-stranded DNA binding|nucleotide binding|poly(A) RNA binding|protein binding|single-stranded DNA binding			skin(1)	1		Hepatocellular(203;0.114)				CTTTCTAACAATTTTTTTACTG	0.287													20	30	---	---	---	---						.
APC	324	broad.mit.edu	37	5	112174471	112174471	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-8245-01A-11D-2340-08	TCGA-HU-8245-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	61cad26a-cbc6-4977-83b9-dc61e49f2861	143533c9-e5de-40a3-967c-a410d9e18e0f	g.chr5:112174471delA	uc010jby.2	+	16	3560	c.3180delA	c.(3178-3180)ATAfs	p.I1060fs	APC_uc011cvt.1_Frame_Shift_Del_p.I1042fs|APC_uc003kpz.3_Frame_Shift_Del_p.I1060fs|APC_uc003kpy.3_Frame_Shift_Del_p.I1060fs|APC_uc010jbz.2_Frame_Shift_Del_p.I777fs|APC_uc010jca.2_Frame_Shift_Del_p.I360fs	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1060	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.Q1062fs*1(2)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		AAGATGAAATAAAACAAAGTG	0.363		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			19	28	---	---	---	---						.
