Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CCDC30	728621	genome.wustl.edu	37	1	43030190	43030191	+	In_Frame_Ins	INS	-	-	CCTCAGGTGATCCACCCACCTCGG	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	ENST00000390640	+1	known	p.7in_frame_insQVIHPPRP	0.063:0.057	-	-	-	-	-	-	-	-	-	NULL
NFASC	23114	genome.wustl.edu	37	1	204939750	204939750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_015090.3	+1	reviewed	p.P348L	1.000	89	0%	109	50.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_I-set,superfamily_SSF48726
PLB1	151056	genome.wustl.edu	37	2	28812899	28812899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_153021.4	+1	validated	p.R682C	0.000	73	0%	83	20.5%	1	0%	possibly_damaging(0.88)	tolerated(0.05)	deleterious(0.689)	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43986092	43986092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_172069.3	+1	validated	p.A1332V	0.717	166	0.6%	117	19.7%	0	-	benign(0.017)	tolerated(0.42)	neutral(0.015)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
ZC3H6	376940	genome.wustl.edu	37	2	113069431	113069445	+	In_Frame_Del	DEL	CCGAAGAAAATCAAA	CCGAAGAAAATCAAA	-	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	CCGAAGAAAATCAAA	CCGAAGAAAATCAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_198581.2	+1	validated	p.PKKIK222in_frame_del	1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
HHLA2	11148	genome.wustl.edu	37	3	108072489	108072489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_007072.2	+1	provisional	p.L94I	0.999	295	0%	200	18.5%	0	-	possibly_damaging(0.58)	deleterious(0)	deleterious(0.643)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
KIAA2018	205717	genome.wustl.edu	37	3	113378747	113378747	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_001009899.2	-1	validated	p.L594	0.193	553	0%	314	36.6%	1	0%	-	-	-	NULL
ITGB5	3693	genome.wustl.edu	37	3	124515330	124515330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_002213.3	-1	provisional	p.C533Y	1.000	186	0%	157	58.6%	135	40.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA
GMPS	8833	genome.wustl.edu	37	3	155639983	155639983	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_003875.2	+1	reviewed	p.G442	0.950	36	0%	21	52.4%	8	87.5%	-	-	-	superfamily_Adenine nucleotide alpha hydrolases-like
DDX60	55601	genome.wustl.edu	37	4	169183899	169183899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_017631.5	-1	validated	p.P1027T	1.000	287	0%	115	49.6%	9	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO10	4651	genome.wustl.edu	37	5	16670992	16670992	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_012334.2	-1	validated	p.Y1842*	0.035	67	0%	29	27.6%	13	7.6%	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
SLC35A4	113829	genome.wustl.edu	37	5	139947311	139947311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_080670.2	+1	provisional	p.P186L	0.984	128	0%	97	50.5%	57	40.3%	benign(0.077)	tolerated(0.82)	neutral(0.006)	HMMPfam_Nuc_sug_transp
PCDHGA5	56110	genome.wustl.edu	37	5	140745817	140745817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_018918.2	+1	reviewed	p.Q640H	1.000	172	0%	86	30.2%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PDE6A	5145	genome.wustl.edu	37	5	149294554	149294554	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_000440.2	-1	reviewed	p.K317M	1.000	158	0%	117	32.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
TBX20	57057	genome.wustl.edu	37	7	35284638	35284638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_001077653.2	-1	reviewed	p.G193S	1.000	68	0%	124	24.2%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2
PKHD1L1	93035	genome.wustl.edu	37	8	110465053	110465053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_177531.4	+1	validated	p.T2205N	0.319	31	0%	21	33.3%	0	-	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	HMMPfam_G8
TMEM2	23670	genome.wustl.edu	37	9	74345013	74345013	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_013390.2	-1	validated	p.R644G	0.183	428	0%	213	19.7%	3	66.6%	probably_damaging(0.984)	tolerated(0.07)	deleterious(0.750)	superfamily_Pectin lyase-like
PRKCQ	5588	genome.wustl.edu	37	10	6527124	6527124	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	ENST00000397178	-1	known	p.R109Q	0.000	369	0%	165	64.2%	1	100%	-	-	-	NULL
MSRB2	22921	genome.wustl.edu	37	10	23393074	23393074	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_012228.3	+1	validated	p.G40	0.405	292	0%	163	32.5%	20	30%	-	-	-	NULL
KIAA1462	57608	genome.wustl.edu	37	10	30317023	30317023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_020848.2	-1	validated	p.R685P	1.000	109	0%	58	65.5%	4	75%	possibly_damaging(0.746)	deleterious(0.04)	deleterious(0.623)	NULL
C10orf62	414157	genome.wustl.edu	37	10	99350211	99350211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_001009997.2	+1	validated	p.R186Q	0.003	97	0%	83	45.8%	2	50%	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	NULL
OR52M1	119772	genome.wustl.edu	37	11	4566854	4566854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_001004137.1	+1	validated	p.R145H	0.000	395	0%	141	58.2%	0	-	benign(0.02)	tolerated(0.25)	neutral(0.038)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000251143	0	genome.wustl.edu	37	11	71728572	71728572	+	RNA	SNP	T	T	G	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	ENST00000502284	+1	known	NULL	0.000	23	0%	20	20%	0	-	-	-	-	-
DDX10	1662	genome.wustl.edu	37	11	108546431	108546431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_004398.2	+1	reviewed	p.K119R	1.000	375	0.3%	94	46.8%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
KRT1	3848	genome.wustl.edu	37	12	53071954	53071954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_006121.3	-1	reviewed	p.I287N	1.000	112	0%	49	24.5%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Filament
RNF17	56163	genome.wustl.edu	37	13	25404700	25404700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_031277.2	+1	reviewed	p.R775H	1.000	269	0%	115	21.7%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Staphylococcal nuclease,superfamily_Tudor/PWWP/MBT
RTN1	6252	genome.wustl.edu	37	14	60194064	60194064	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_021136.2	-1	reviewed	p.S446	0.163	5	0.000	5	1.000	2	100%	-	-	-	NULL
MIR487A	619555	genome.wustl.edu	37	14	101518837	101518837	+	RNA	SNP	A	A	G	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	ENST00000384827	+1	known	NULL	1.000	47	0%	23	17.4%	0	-	-	-	-	-
ATP2A1	487	genome.wustl.edu	37	16	28898595	28898595	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_173201.2	+1	reviewed	p.S210	1.000	39	0%	46	56.5%	2	50%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
TP53	7157	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343	byCluster	TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_000546.4	-1	reviewed	p.R273C	0.830	156	0.6%	85	87.1%	77	96.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
FECH	2235	genome.wustl.edu	37	18	55222096	55222096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_001012515.2	-1	reviewed	p.R304Q	1.000	105	0%	58	70.7%	12	83.3%	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	HMMPfam_Ferrochelatase,superfamily_Chelatase
NAPSA	9476	genome.wustl.edu	37	19	50862271	50862271	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_004851.1	-1	reviewed	p.I344	0.995	41	0%	30	53.3%	0	-	-	-	-	HMMPfam_Asp,superfamily_Pept_Aspartic
PPP2R1A	5518	genome.wustl.edu	37	19	52715971	52715971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_014225.5	+1	reviewed	p.P179R	1.000	94	0%	49	34.7%	127	55.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
MMP24	10893	genome.wustl.edu	37	20	33834666	33834666	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_006690.3	+1	reviewed	p.Y90	1.000	155	0%	149	56.4%	0	-	-	-	-	HMMPfam_PG_binding_1,superfamily_PGBD-like
PTPRT	11122	genome.wustl.edu	37	20	40877410	40877410	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	ENST00000454126	-1	known	p.T378I	1.000	282	0%	203	62.6%	0	-	-	-	-	NULL
CASS4	57091	genome.wustl.edu	37	20	55012467	55012467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_020356.3	+1	validated	p.E95G	0.646	132	0%	129	22.5%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
SMARCB1	6598	genome.wustl.edu	37	22	24175801	24175801	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_003073.3	+1	reviewed	p.T343	0.335	53	0%	36	19.4%	195	34.3%	-	-	-	HMMPfam_SNF5
ENSG00000211459	0	genome.wustl.edu	37	MT	690	690	+	RNA	SNP	T	T	C	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	ENST00000389680	+1	known	NULL	NULL	260	0%	145	96.6%	1623	98.6%	-	-	-	-
ENSG00000210082	0	genome.wustl.edu	37	MT	2636	2636	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	ENST00000387347	+1	known	NULL	NULL	221	0%	123	97.6%	1939	98.1%	-	-	-	-
PHKA2	5256	genome.wustl.edu	37	X	18943866	18943866	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_000292.2	-1	reviewed	p.R497*	1.000	253	0.8%	198	66.7%	0	-	-	-	-	HMMPfam_PHK_AB
NYX	60506	genome.wustl.edu	37	X	41307173	41307173	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_022567.2	+1	reviewed	p.L11	0.996	26	0%	14	35.7%	0	-	-	-	-	NULL
CXorf66	347487	genome.wustl.edu	37	X	139038878	139038878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G3-01A-11W-A062-09	TCGA-A5-A0G3-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7113c822-9f31-4f46-9d10-cf7c97ad4910	f9e2e4b0-1e40-4c7f-8e3b-d0c8fbfa5861	NM_001013403.2	-1	validated	p.A88V	0.000	597	0%	415	17.6%	0	-	probably_damaging(0.965)	tolerated(0.13)	deleterious(0.659)	NULL
