Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
WDTC1	23038	genome.wustl.edu	37	1	27632827	27632827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_015023.3	+1	validated	p.D662N	1.000	41	0%	67	46.3%	13	30.7%	possibly_damaging(0.482)	tolerated(0.05)	deleterious(0.505)	NULL
FHL3	2275	genome.wustl.edu	37	1	38463541	38463541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_004468.3	-1	validated	p.T168M	1.000	68	0%	123	31.7%	58	34.4%	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
SLC6A9	6536	genome.wustl.edu	37	1	44476519	44476519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_201649.2	-1	validated	p.D95E	1.000	375	0%	104	67.3%	9	77.7%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
COL11A1	1301	genome.wustl.edu	37	1	103461439	103461439	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_080629.2	-1	reviewed	p.K786M	1.000	278	0%	169	34.3%	0	-	possibly_damaging(0.829)	deleterious(0.03)	deleterious(0.679)	HMMPfam_Collagen
REG4	83998	genome.wustl.edu	37	1	120341123	120341124	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_032044.3	-1	validated	p.N135fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
ITGA10	8515	genome.wustl.edu	37	1	145527965	145527965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_003637.3	+1	reviewed	p.D68N	0.913	76	0%	33	24.2%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
INTS3	65123	genome.wustl.edu	37	1	153736664	153736664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_023015.3	+1	validated	p.R631Q	0.999	342	0%	487	50.5%	20	50%	possibly_damaging(0.887)	tolerated(0.61)	neutral(0.351)	NULL
FCGR3B	2215	genome.wustl.edu	37	1	161599622	161599622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_000570.3	-1	validated	p.C89R	0.753	235	0%	169	38.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TNN	63923	genome.wustl.edu	37	1	175046634	175046634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_022093.1	+1	validated	p.T27I	0.000	23	0%	92	30.4%	0	-	possibly_damaging(0.513)	tolerated(0.15)	neutral(0.413)	NULL
IGFN1	91156	genome.wustl.edu	37	1	201190614	201190614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	ENST00000451870	+1	known	p.S857L	0.022	20	0%	37	21.6%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PLXNA2	5362	genome.wustl.edu	37	1	208390899	208390899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_025179.3	-1	reviewed	p.E123D	1.000	201	0%	194	29.4%	1	0%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
KMO	8564	genome.wustl.edu	37	1	241731894	241731894	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_003679.3	+1	validated	p.L302V	1.000	1306	0.2%	198	26.3%	0	-	benign(0.008)	tolerated(0.23)	neutral(0.042)	superfamily_FAD/NAD(P)-binding domain
PLD5	200150	genome.wustl.edu	37	1	242451736	242451736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_152666.1	-1	provisional	p.N49K	1.000	715	0%	147	31.3%	0	-	possibly_damaging(0.918)	tolerated(0.65)	neutral(0.371)	superfamily_SSF56024
PXDN	7837	genome.wustl.edu	37	2	1657519	1657519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_012293.1	-1	validated	p.R662P	1.000	275	0%	47	44.7%	44	61.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC5A6	8884	genome.wustl.edu	37	2	27426657	27426657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_021095.2	-1	validated	p.G362S	1.000	217	0%	97	42.3%	10	40%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_SSF
AAK1	22848	genome.wustl.edu	37	2	69870164	69870166	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_014911.3	-1	reviewed	p.K3in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	125261953	125261953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_130773.2	+1	reviewed	p.G382S	0.995	274	0%	153	56.2%	0	-	benign(0.201)	deleterious(0.04)	neutral(0.368)	superfamily_ConA_like_lec_gl
NEB	4703	genome.wustl.edu	37	2	152432728	152432728	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_004543.4	-1	reviewed	p.Y3914*	1.000	83	0%	143	28%	0	-	-	-	-	HMMSmart_SM00227
DLEC1	9940	genome.wustl.edu	37	3	38138085	38138085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_007337.2	+1	reviewed	p.S733P	0.000	256	0%	119	30.3%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
HYAL2	8692	genome.wustl.edu	37	3	50355749	50355749	+	Silent	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_003773.4	-1	reviewed	p.G411	0.005	9	0.000	36	0.222	418	20.5%	-	-	-	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119120755	119120755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_020754.2	+1	reviewed	p.G386S	1.000	29	0%	66	30.3%	0	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
DHX36	170506	genome.wustl.edu	37	3	153993987	153993987	+	Silent	SNP	T	T	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_020865.2	-1	validated	p.P1000	0.055	593	0%	147	29.9%	16	50%	-	-	-	NULL
ATP13A3	79572	genome.wustl.edu	37	3	194168624	194168624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_024524.3	-1	validated	p.G422D	0.968	613	0.3%	857	19.8%	0	-	possibly_damaging(0.815)	tolerated(0.31)	neutral(0.335)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
C3orf43	255798	genome.wustl.edu	37	3	196234998	196234998	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001077657.1	-1	validated	p.D135	0.245	386	0.3%	318	46.9%	0	-	-	-	-	NULL
OTOP1	133060	genome.wustl.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs140419016	byCluster;by1000genomes	TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	CCACAGCAG	CCACAGCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_177998.1	-1	provisional	p.LLW104in_frame_del	1.000:1.000:1.000:0.995:0.999:0.998:0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
FBXW7	55294	genome.wustl.edu	37	4	153247289	153247289	+	Missense_Mutation	SNP	G	G	A	rs149680468		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_033632.2	-1	reviewed	p.R505C	1.000	509	0%	136	49.3%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FAT1	2195	genome.wustl.edu	37	4	187557773	187557773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_005245.3	-1	reviewed	p.R1313K	1.000	333	0%	525	42.7%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
TRIML1	339976	genome.wustl.edu	37	4	189060959	189060959	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_178556.3	+1	provisional	p.S83T	0.001	32	0%	44	59.1%	0	-	benign(0.063)	tolerated(0.72)	neutral(0.005)	superfamily_SSF57850
AHRR	57491	genome.wustl.edu	37	5	354005	354005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_020731.3	+1	reviewed	p.R79W	0.997	79	0%	69	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353
LIFR	3977	genome.wustl.edu	37	5	38485965	38485965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001127671.1	-1	reviewed	p.G818E	0.972	654	0%	203	44.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
G3BP1	10146	genome.wustl.edu	37	5	151179471	151179471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_005754.2	+1	reviewed	p.E289K	1.000	228	0%	105	49.5%	15	33.3%	unknown(0)	tolerated(0.27)	-	NULL
DDR1	780	genome.wustl.edu	37	6	30860301	30860301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_013994.2	+1	reviewed	p.E361K	1.000	119	0%	172	30.8%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC22A16	85413	genome.wustl.edu	37	6	110752438	110752438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_033125.2	-1	provisional	p.R486H	0.885	98	0%	158	23.4%	9	11.1%	probably_damaging(0.958)	tolerated(0.1)	deleterious(0.688)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
BMP1	649	genome.wustl.edu	37	8	22056730	22056730	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	ENST00000313857	+1	known	p.S768*	0.805	17	0%	35	80%	0	-	-	-	-	NULL
ZCCHC6	79670	genome.wustl.edu	37	9	88958005	88958005	+	Silent	SNP	G	G	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_024617.3	-1	validated	p.I357	0.987	340	0%	118	36.4%	1	0%	-	-	-	superfamily_Nucleotidyltransferase
DBC1	1620	genome.wustl.edu	37	9	121971060	121971060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_014618.2	-1	validated	p.R361H	1.000	559	0%	56	53.6%	9	33.3%	possibly_damaging(0.852)	tolerated(0.53)	neutral(0.335)	NULL
PRPF18	8559	genome.wustl.edu	37	10	13652180	13652180	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_003675.3	+1	reviewed	p.L169V	1.000	269	0%	163	41.7%	9	55.5%	possibly_damaging(0.706)	deleterious(0.02)	deleterious(0.637)	superfamily_Functional domain of the splicing factor Prp18
LRRC18	474354	genome.wustl.edu	37	10	50121577	50121577	+	Silent	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001006939.3	-1	validated	p.A208	0.000	426	0%	219	44.3%	0	-	-	-	-	NULL
INPP5F	22876	genome.wustl.edu	37	10	121587116	121587116	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_014937.2	+1	reviewed	p.R1075*	1.000	290	0%	266	27.8%	1	0%	-	-	-	NULL
DMBT1	1755	genome.wustl.edu	37	10	124348477	124348477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_007329.2	+1	reviewed	p.A601T	0.000	694	0%	376	34.3%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	superfamily_SRCR-like
DUSP8	1850	genome.wustl.edu	37	11	1579147	1579147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_004420.2	-1	reviewed	p.D233G	1.000	32	0%	13	100%	23	100%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
MS4A3	932	genome.wustl.edu	37	11	59837098	59837098	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_006138.4	+1	reviewed	p.I189L	0.000	530	0%	279	54.8%	0	-	benign(0.147)	deleterious(0)	neutral(0.458)	HMMPfam_CD20
HEPHL1	341208	genome.wustl.edu	37	11	93844085	93844085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001098672.1	+1	validated	p.R1021Q	1.000	980	0%	75	92%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2
GRIA4	2893	genome.wustl.edu	37	11	105795168	105795168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_000829.3	+1	reviewed	p.R507L	1.000	470	0.2%	278	63.3%	0	-	possibly_damaging(0.889)	deleterious(0)	deleterious(0.794)	HMMSmart_PBPe,superfamily_SSF53850
CHD4	1108	genome.wustl.edu	37	12	6697097	6697097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001273.2	-1	reviewed	p.R1162W	1.000	292	0.3%	319	32%	30	36.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
CELA1	1990	genome.wustl.edu	37	12	51735139	51735139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001971.5	-1	reviewed	p.A118T	1.000	141	0%	170	17.6%	0	-	benign(0.051)	deleterious(0.05)	neutral(0.348)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ATP5B	506	genome.wustl.edu	37	12	57038586	57038586	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001686.3	-1	reviewed	p.R155T	1.000	186	0%	283	60.8%	193	24.8%	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLITRK5	26050	genome.wustl.edu	37	13	88329538	88329538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_015567.1	+1	validated	p.A632V	0.002	88	0%	70	45.7%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
WDHD1	11169	genome.wustl.edu	37	14	55474051	55474051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_007086.2	-1	reviewed	p.V183M	1.000	380	0.3%	66	87.9%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_WD40_like
TDRD9	122402	genome.wustl.edu	37	14	104464994	104464994	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_153046.2	+1	validated	p.C471S	1.000	1537	0.1%	588	21.9%	0	-	possibly_damaging(0.862)	tolerated(0.47)	neutral(0.344)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
UNC13C	440279	genome.wustl.edu	37	15	54306540	54306540	+	Silent	SNP	C	C	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001080534.1	+1	provisional	p.S480	0.961	80	0%	186	38.2%	0	-	-	-	-	NULL
SEMA7A	8482	genome.wustl.edu	37	15	74711251	74711251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_003612.3	-1	reviewed	p.P74Q	0.871	27	0%	25	52%	4	75%	benign(0.138)	tolerated(0.12)	neutral(0.272)	superfamily_Sema
EIF4A1	1973	genome.wustl.edu	37	17	7480414	7480414	+	Silent	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001416.2	+1	validated	p.D185	0.999	537	0%	216	29.2%	737	24.5%	-	-	-	PatternScan_DEAD_ATP_HELICASE,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TP53	7157	genome.wustl.edu	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	rs121912651	byCluster	TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_000546.4	-1	reviewed	p.R248W	1.000	368	0%	77	92.2%	107	98.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
DNAH9	1770	genome.wustl.edu	37	17	11603060	11603060	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001372.3	+1	reviewed	p.L1629V	1.000	297	0%	126	61.1%	1	100%	benign(0.207)	deleterious(0)	neutral(0.465)	HMMPfam_DHC_N2
RAB11FIP4	84440	genome.wustl.edu	37	17	29848990	29848990	+	Silent	SNP	T	T	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_032932.3	+1	validated	p.V272	0.842	86	0%	17	82.4%	1	100%	-	-	-	NULL
ITGA2B	3674	genome.wustl.edu	37	17	42453709	42453709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_000419.3	-1	reviewed	p.P772Q	0.961	98	0%	59	37.3%	0	-	benign(0.088)	tolerated(0.58)	neutral(0.011)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
NXPH3	11248	genome.wustl.edu	37	17	47656213	47656213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_007225.2	+1	validated	p.D104N	1.000	30	0%	19	47.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neurexophilin
C3	718	genome.wustl.edu	37	19	6697668	6697668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_000064.2	-1	reviewed	p.L860F	0.314	88	0%	173	16.2%	171	19.2%	probably_damaging(0.985)	tolerated(0.08)	deleterious(0.732)	HMMPfam_A2M
MUC16	94025	genome.wustl.edu	37	19	9065593	9065593	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_024690.2	-1	validated	p.S7285T	0.000	510	0%	697	16.5%	3	0%	unknown(0)	-	-	NULL
P2RY11	5032	genome.wustl.edu	37	19	10225031	10225031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_002566.4	+1	reviewed	p.A248T	0.003	14	0%	81	22.2%	16	12.5%	benign(0.06)	tolerated(0.68)	neutral(0.006)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
QTRT1	81890	genome.wustl.edu	37	19	10823805	10823829	+	Frame_Shift_Del	DEL	GAGCGCCGTCCGCACCAGCATCGTG	GAGCGCCGTCCGCACCAGCATCGTG	-	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	GAGCGCCGTCCGCACCAGCATCGTG	GAGCGCCGTCCGCACCAGCATCGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_031209.2	+1	validated	p.S358fs	1.000:0.998:0.988:0.721:0.837:0.833:0.012:0.022:0.490:0.501:0.675:0.701:0.081:0.091:0.925:0.996:1.000:1.000:1.000:1.000:0.997:0.626:0.632:0.990:0.992	-	-	-	-	-	-	-	-	-	HMMPfam_TGT,superfamily_tRNA_ribo_trans
SLC1A6	6511	genome.wustl.edu	37	19	15079219	15079219	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_005071.1	-1	provisional	p.L148	0.966	205	0%	72	26.4%	2	50%	-	-	-	HMMPfam_SDF
ZNF493	284443	genome.wustl.edu	37	19	21607651	21607651	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001076678.2	+1	validated	p.K730N	0.136	126	0%	141	30.5%	0	-	benign(0.12)	tolerated(0.36)	neutral(0.029)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780B	163131	genome.wustl.edu	37	19	40541297	40541297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001005851.2	-1	validated	p.R490Q	0.000	380	1.6%	290	42.1%	0	-	benign(0.318)	tolerated(0.62)	neutral(0.104)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SPTBN4	57731	genome.wustl.edu	37	19	40978640	40978640	+	Missense_Mutation	SNP	G	G	A	rs73931308	byCluster;byFrequency;by1000genomes	TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_020971.2	+1	reviewed	p.A38T	0.328	5	0.000	5	1.000	0	-	benign(0.22)	tolerated(0.38)	neutral(0.039)	NULL
PSG9	5678	genome.wustl.edu	37	19	43762418	43762454	+	Frame_Shift_Del	DEL	AGCATAGAGCCCGCTATGATTTCTAGTAATTTGGGGG	AGCATAGAGCCCGCTATGATTTCTAGTAATTTGGGGG	-	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	AGCATAGAGCCCGCTATGATTTCTAGTAATTTGGGGG	AGCATAGAGCCCGCTATGATTTCTAGTAATTTGGGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_002784.3	-1	validated	p.P382fs	0.001:0.000:0.000:0.002:0.003:0.004:0.003:0.001:0.001:0.002:0.003:0.001:0.000:0.001:0.002:0.002:0.002:0.000:0.000:0.001:0.000:0.000:0.000:0.001:0.003:0.002:0.001:0.001:0.001:0.001:0.000:0.001:0.002:0.003:0.005:0.004:0.005	-	-	-	-	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ENSG00000248985	0	genome.wustl.edu	37	19	46970589	46970590	+	RNA	INS	-	-	ACACAC	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	ENST00000503237	+1	novel	NULL	0.003:0.005	-	-	-	-	-	-	-	-	-	-
POLD1	5424	genome.wustl.edu	37	19	50912397	50912397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_002691.2	+1	validated	p.F637L	1.000	46	0%	22	45.5%	11	27.2%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
ITGB2	3689	genome.wustl.edu	37	21	46320360	46320362	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_000211.3	-1	reviewed	p.R257in_frame_del	1.000:0.983:0.993	-	-	-	-	-	-	-	-	-	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300
HMGXB4	10042	genome.wustl.edu	37	22	35659143	35659143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001003681.2	+1	validated	p.R35H	1.000	140	0.7%	61	50.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENSG00000198888	0	genome.wustl.edu	37	MT	3538	3538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	ENST00000361390	+1	known	p.A78T	NULL	13	0%	108	96.3%	5601	95.6%	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	HMMPfam_NADHdh
PHF16	9767	genome.wustl.edu	37	X	46917818	46917818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001077445.1	+1	reviewed	p.R604H	0.823	188	0.5%	171	40.9%	2	0%	probably_damaging(0.954)	tolerated(0.07)	deleterious(0.717)	NULL
TRO	7216	genome.wustl.edu	37	X	54949318	54949318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001039705.1	+1	reviewed	p.A118D	0.220	188	0%	150	28%	5	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SPIN2B	474343	genome.wustl.edu	37	X	57146314	57146314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001006681.1	-1	validated	p.Y250C	1.000	896	0%	361	24.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spin-Ssty
CXorf65	158830	genome.wustl.edu	37	X	70323922	70323922	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001025265.2	-1	validated	p.R156P	0.004	885	0%	212	21.2%	0	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
DACH2	117154	genome.wustl.edu	37	X	85994747	85994747	+	Splice_Site	SNP	C	C	G	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	ENST00000506327	+1	known	e3-1	0.012	667	0.1%	23	34.8%	0	-	-	-	-	-
GLA	2717	genome.wustl.edu	37	X	100658883	100658883	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_000169.2	-1	reviewed	p.W95*	1.000	445	0%	365	24.7%	8	0%	-	-	-	HMMPfam_Melibiase,PatternScan_ALPHA_GALACTOSIDASE,superfamily_(Trans)glycosidases
ALG13	79868	genome.wustl.edu	37	X	110951323	110951323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	ENST00000394780	+1	known	p.A151V	0.001	326	0%	124	36.3%	0	-	possibly_damaging(0.763)	tolerated(0.16)	neutral(0.342)	NULL
FLNA	2316	genome.wustl.edu	37	X	153577902	153577902	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A05H-01A-11W-A027-09	TCGA-AP-A05H-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	674ac901-4ee0-43d9-ba62-2ace69cf0c62	70a2d11e-a612-4100-8c4e-2dca17059d15	NM_001110556.1	-1	reviewed	p.H2528Q	0.867	27	0%	27	33.3%	1622	29%	benign(0.258)	tolerated(1)	neutral(0.027)	NULL
