Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARID1A	8289	genome.wustl.edu	37	1	27105550	27105550	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_006015.4	+1	reviewed	p.R1721*	1.000	461	0%	424	19.8%	-	-	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27107092	27107093	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_006015.4	+1	reviewed	p.R2236fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KHDRBS1	10657	genome.wustl.edu	37	1	32503580	32503580	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_006559.1	+1	provisional	p.A350	0.836	118	0%	103	17.5%	-	-	-	-	-	NULL
WLS	79971	genome.wustl.edu	37	1	68619222	68619222	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001002292.2	-1	validated	p.R259*	1.000	200	0%	156	37.2%	-	-	-	-	-	HMMPfam_DUF1171
CFH	3075	genome.wustl.edu	37	1	196646701	196646701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_000186.3	+1	reviewed	p.R175W	0.002	298	0%	274	25.5%	-	-	possibly_damaging(0.881)	deleterious(0.01)	deleterious(0.749)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
USH2A	7399	genome.wustl.edu	37	1	215972272	215972272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_206933.2	-1	reviewed	p.G3312E	0.998	249	0%	287	27.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00060,superfamily_Fibronectin type III
HNRNPU	3192	genome.wustl.edu	37	1	245022609	245022609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_031844.2	-1	reviewed	p.G362V	1.000	59	0%	23	21.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY,HMMSmart_SM00449
RAB3GAP1	22930	genome.wustl.edu	37	2	135848653	135848653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_012233.2	+1	reviewed	p.L79P	1.000	157	0%	271	27.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SCN3A	6328	genome.wustl.edu	37	2	165997296	165997296	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_006922.3	-1	reviewed	p.A628	1.000	160	0%	152	47.4%	-	-	-	-	-	NULL
NFE2L2	4780	genome.wustl.edu	37	2	178098945	178098945	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_006164.3	-1	validated	p.R34G	1.000	90	0%	125	54.4%	-	-	unknown(0)	deleterious(0)	-	NULL
SPATS2L	26010	genome.wustl.edu	37	2	201303934	201303935	+	Frame_Shift_Ins	INS	-	-	GGTC	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001100422.1	+1	validated	p.A181fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1387
ATIC	471	genome.wustl.edu	37	2	216200794	216200794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_004044.6	+1	reviewed	p.E349K	1.000	341	0%	526	15%	-	-	benign(0.276)	deleterious(0.03)	neutral(0.394)	HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly
CTNNB1	1499	genome.wustl.edu	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001098209.1	+1	reviewed	p.G34E	1.000	103	0%	83	19.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SERPINI1	5274	genome.wustl.edu	37	3	167512530	167512530	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001122752.1	+1	reviewed	p.L267	0.982	168	0%	167	43.1%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
PIK3CA	5290	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A	rs121913286	byCluster	TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_006218.2	+1	reviewed	p.Q546K	1.000	107	0%	111	11.7%	-	-	probably_damaging(0.978)	tolerated(0.11)	deleterious(0.692)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
ENSG00000252150	0	genome.wustl.edu	37	4	461410	461410	+	RNA	SNP	G	G	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	ENST00000516341	-1	novel	NULL	0.173	64	0%	75	12%	-	-	-	-	-	-
LOC643446	643446	genome.wustl.edu	37	4	11373841	11373841	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	XM_001130637.2	+1	model	p.S81	0.129	43	0%	27	33.3%	-	-	-	-	-	NULL
CCKAR	886	genome.wustl.edu	37	4	26484777	26484777	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_000730.2	-1	reviewed	e4+1	1.000	263	0%	339	27.4%	-	-	-	-	-	-
SKP2	6502	genome.wustl.edu	37	5	36180334	36180336	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	ENST00000308927	+1	known	p.N369in_frame_del	0.000:0.001:0.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589562	67589564	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_181523.1	+1	reviewed	p.IE442in_frame_delK	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
HOMER1	9456	genome.wustl.edu	37	5	78742931	78742931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_004272.3	-1	validated	p.R111L	1.000	110	0%	136	42.6%	-	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_PH domain-like
PCDHB6	56130	genome.wustl.edu	37	5	140531438	140531438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_018939.2	+1	reviewed	p.R534C	0.162	85	0%	55	32.7%	-	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB13	56123	genome.wustl.edu	37	5	140594620	140594620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_018933.2	+1	reviewed	p.D309N	0.980	289	0%	168	42.3%	-	-	possibly_damaging(0.602)	deleterious(0.05)	deleterious(0.554)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCTN4	51164	genome.wustl.edu	37	5	150110289	150110289	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001135643.1	-1	validated	p.Q253	1.000	272	0%	223	20.6%	-	-	-	-	-	HMMPfam_Dynactin_p62
GALNT10	55568	genome.wustl.edu	37	5	153760076	153760080	+	Frame_Shift_Del	DEL	CGGTA	CGGTA	-	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	CGGTA	CGGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_198321.3	+1	reviewed	p.Y276fs	1.000:1.000:0.974:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
PRPF4B	8899	genome.wustl.edu	37	6	4031797	4031797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_003913.4	+1	reviewed	p.E16K	0.999	104	0%	80	37.5%	-	-	possibly_damaging(0.915)	deleterious(0.03)	deleterious(0.731)	NULL
COL19A1	1310	genome.wustl.edu	37	6	70639431	70639431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001858.4	+1	reviewed	p.R169C	1.000	283	0%	246	34.6%	-	-	unknown(0)	deleterious(0.03)	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
C6orf70	55780	genome.wustl.edu	37	6	170155490	170155490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_018341.1	+1	validated	p.P96R	0.000	70	0%	49	26.5%	-	-	possibly_damaging(0.901)	tolerated(0.1)	deleterious(0.643)	NULL
BAZ1B	9031	genome.wustl.edu	37	7	72863878	72863878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_032408.3	-1	validated	p.R1241H	1.000	122	0%	141	14.2%	-	-	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	NULL
C7orf63	79846	genome.wustl.edu	37	7	89936216	89936216	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001039706.2	+1	validated	p.I710S	1.000	93	0%	100	20%	-	-	benign(0.01)	deleterious(0.01)	neutral(0.406)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121651553	121651553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_002851.2	+1	reviewed	p.P818L	1.000	412	0%	445	51.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74360368	74360368	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_013390.2	-1	validated	p.A200	0.996	202	0%	208	39.4%	-	-	-	-	-	HMMPfam_G8
C9orf95	54981	genome.wustl.edu	37	9	77693423	77693425	+	RNA	DEL	GAG	GAG	-	rs35443976	byCluster;by1000genomes	TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NR_023352.1	-1	validated	NULL	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	-
TRIM32	22954	genome.wustl.edu	37	9	119460626	119460626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001099679.1	+1	reviewed	p.S202F	1.000	48	0%	40	42.5%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SARDH	1757	genome.wustl.edu	37	9	136596606	136596606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001134707.1	-1	reviewed	p.L171M	1.000	32	0%	22	40.9%	-	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_DAO,superfamily_SSF51905
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Nonsense_Mutation	SNP	C	C	T	rs121909224	byCluster	TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	ENST00000371953	+1	known	p.R130*	1.000	396	0%	430	44.7%	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	ENST00000371953	+1	known	p.R233*	0.984	337	0.3%	420	25.2%	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
GBF1	8729	genome.wustl.edu	37	10	104136744	104136744	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_004193.1	+1	provisional	p.G1446	0.990	154	0%	184	17.4%	-	-	-	-	-	NULL
NUMA1	4926	genome.wustl.edu	37	11	71727542	71727542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_006185.2	-1	validated	p.G385V	0.996	63	0%	51	35.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZBTB16	7704	genome.wustl.edu	37	11	113934462	113934462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001018011.1	+1	reviewed	p.D147G	1.000	18	0%	12	41.7%	-	-	benign(0.167)	tolerated(0.09)	neutral(0.311)	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14610169	14610169	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_018179.3	+1	validated	p.E700*	1.000	117	0%	126	32.5%	-	-	-	-	-	NULL
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_033360.2	-1	reviewed	p.G12V	1.000	38	0%	22	22.7%	-	-	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR6C75	390323	genome.wustl.edu	37	12	55759353	55759353	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001005497.1	+1	provisional	p.I153	0.116	222	0%	234	21.8%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TRHDE	29953	genome.wustl.edu	37	12	73012792	73012792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_013381.2	+1	reviewed	p.R770C	1.000	139	0%	181	40.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KCNC2	3747	genome.wustl.edu	37	12	75444734	75444734	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_139137.2	-1	reviewed	p.R351	0.999	164	0%	191	19.4%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
HSP90B1	7184	genome.wustl.edu	37	12	104335315	104335319	+	Frame_Shift_Del	DEL	ATTAC	ATTAC	-	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	ATTAC	ATTAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_003299.1	+1	provisional	p.Y408fs	1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90
CENPJ	55835	genome.wustl.edu	37	13	25479518	25479518	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_018451.3	-1	reviewed	p.E886	0.911	183	0%	246	23.6%	-	-	-	-	-	NULL
LOC100132257	100132257	genome.wustl.edu	37	14	19117129	19117129	+	Frame_Shift_Del	DEL	A	A	-	rs141168980	byCluster;by1000genomes	TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	XM_002343306.1	+1	model	p.S127fs	0.002	-	-	-	-	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SYT16	83851	genome.wustl.edu	37	14	62541899	62541899	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_031914.2	+1	validated	p.Y261	0.998	153	0%	139	40.3%	-	-	-	-	-	NULL
SERPINA6	866	genome.wustl.edu	37	14	94780546	94780546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_001756.3	-1	reviewed	p.I147N	0.027	216	0%	185	27.6%	-	-	possibly_damaging(0.734)	deleterious(0.01)	deleterious(0.674)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
VRK1	7443	genome.wustl.edu	37	14	97321623	97321623	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_003384.2	+1	reviewed	p.Y213	1.000	148	0.7%	124	35.5%	-	-	-	-	-	superfamily_Kinase_like
IGHM	3507	genome.wustl.edu	37	14	106321761	106321761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	ENST00000496208	-1	known	p.G157D	0.552	31	0%	25	44%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
USP22	23326	genome.wustl.edu	37	17	20906349	20906349	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_015276.1	-1	validated	p.E525fs	1.000	-	-	-	-	-	-	-	-	-	NULL
NUFIP2	57532	genome.wustl.edu	37	17	27613851	27613851	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_020772.2	-1	validated	p.T387	1.000	127	0%	97	28.9%	-	-	-	-	-	NULL
SYNRG	11276	genome.wustl.edu	37	17	35913779	35913779	+	Silent	SNP	T	T	G	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_007247.4	-1	reviewed	p.L682	0.732	105	0%	100	25%	-	-	-	-	-	NULL
KRTAP4-7	100132476	genome.wustl.edu	37	17	39240789	39240803	+	Frame_Shift_Del	DEL	CGCCCCAGCTGCTGC	CGCCCCAGCTGCTGC	-	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	CGCCCCAGCTGCTGC	CGCCCCAGCTGCTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	ENST00000377731	+1	known	p.R111fs	0.000:0.000:0.000:0.007:0.640:0.619:0.629:0.687:0.896:0.903:0.912	-	-	-	-	-	-	-	-	-	HMMPfam_Keratin_B2
ACSF2	80221	genome.wustl.edu	37	17	48539805	48539805	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_025149.4	+1	validated	p.I217	0.973	56	0%	41	48.8%	-	-	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
FHOD3	80206	genome.wustl.edu	37	18	34320755	34320755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_025135.2	+1	validated	p.R1063Q	1.000	120	0%	134	34.3%	-	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
CYP4F12	66002	genome.wustl.edu	37	19	15794436	15794436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_023944.2	+1	reviewed	p.R261C	0.687	232	0%	173	34.7%	-	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	HMMPfam_p450,superfamily_Cytochrome P450
KIRREL2	84063	genome.wustl.edu	37	19	36349430	36349430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_199180.2	+1	validated	p.R111H	1.000	56	0%	19	57.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CYP2A13	1553	genome.wustl.edu	37	19	41601743	41601743	+	Missense_Mutation	SNP	G	G	A	rs187221928	by1000genomes	TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_000766.3	+1	reviewed	p.R461H	0.000	63	0%	42	11.9%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_p450,superfamily_Cytochrome_P450
RASIP1	54922	genome.wustl.edu	37	19	49230661	49230661	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_017805.2	-1	validated	p.R620	0.998	160	0%	76	28.9%	-	-	-	-	-	NULL
ACPT	93650	genome.wustl.edu	37	19	51295580	51295580	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_033068.2	+1	reviewed	p.T211P	0.935	7	0.000	8	0.500	-	-	probably_damaging(0.991)	tolerated(0.2)	deleterious(0.493)	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
MTMR8	55613	genome.wustl.edu	37	X	63569876	63569876	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_017677.3	-1	reviewed	p.K181N	0.847	223	0%	277	20.2%	-	-	unknown(0)	tolerated(0.14)	-	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
TKTL1	8277	genome.wustl.edu	37	X	153533707	153533707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05W-01A-21W-A027-09	TCGA-AX-A05W-10A-01W-A027-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd258332-f1bb-47a9-91fd-93df87c84eb6	7286cf3d-34e0-4c4b-b55d-f9ae8382a71c	NM_012253.3	+1	validated	p.F62L	0.990	53	0%	29	24.1%	-	-	unknown(0)	deleterious(0)	-	superfamily_Thiamin diphosphate-binding fold (THDP-binding)
