Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
UCK2	7371	genome.wustl.edu	37	1	165859498	165859498	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_012474.3	+1	reviewed	p.Q53E	1.000	276	0%	274	72.3%	43	39.5%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases
HS1BP3	64342	genome.wustl.edu	37	2	20823725	20823725	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	ENST00000415264	-1	known	p.Q37*	0.960	61	0%	109	37.6%	14	42.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
VIT	5212	genome.wustl.edu	37	2	37036011	37036011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_053276.3	+1	validated	p.A596T	0.997	138	0%	77	45.5%	0	-	probably_damaging(0.999)	tolerated(0.36)	deleterious(0.510)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
PTPN4	5775	genome.wustl.edu	37	2	120643369	120643438	+	Frame_Shift_Del	DEL	TTGATTGATTGATCTCATTTTTAACTTAATGATGTCTTTATAGAGGCTTATCTCCTGCAGAAGCAGAATT	TTGATTGATTGATCTCATTTTTAACTTAATGATGTCTTTATAGAGGCTTATCTCCTGCAGAAGCAGAATT	-	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	TTGATTGATTGATCTCATTTTTAACTTAATGATGTCTTTATAGAGGCTTATCTCCTGCAGAAGCAGAATT	TTGATTGATTGATCTCATTTTTAACTTAATGATGTCTTTATAGAGGCTTATCTCCTGCAGAAGCAGAATT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_002830.2	+1	reviewed	p.I197fs	1.000:1.000:0.999:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
SESTD1	91404	genome.wustl.edu	37	2	180008513	180008513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_178123.4	-1	validated	p.E219K	1.000	217	0%	63	47.6%	6	66.6%	benign(0.025)	deleterious(0)	neutral(0.446)	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185802431	185802431	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_194250.1	+1	provisional	p.R770*	0.978	61	1.6%	15	60%	0	-	-	-	-	NULL
FARSB	10056	genome.wustl.edu	37	2	223507595	223507595	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_005687.3	-1	reviewed	p.R82*	1.000	175	0%	42	33.3%	9	22.2%	-	-	-	superfamily_Putative DNA-binding domain
PRLH	51052	genome.wustl.edu	37	2	238475690	238475690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_015893.1	+1	provisional	p.G46R	0.002	54	0%	65	23.1%	1	100%	benign(0.332)	tolerated(0.1)	neutral(0.390)	NULL
FARP2	9855	genome.wustl.edu	37	2	242402777	242402777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_014808.2	+1	validated	p.D569Y	0.998	147	0%	207	38.6%	4	0%	possibly_damaging(0.819)	deleterious(0.04)	deleterious(0.658)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
IQSEC1	9922	genome.wustl.edu	37	3	12942851	12942851	+	Frame_Shift_Del	DEL	C	C	-	rs144519752	byCluster;by1000genomes	TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001134382.1	-1	validated	p.A993fs	0.086	-	-	-	-	-	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266103	41266103	+	Missense_Mutation	SNP	G	G	A	rs121913399		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001098209.1	+1	reviewed	p.G34R	1.000	121	0%	26	42.3%	124	35.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ROBO1	6091	genome.wustl.edu	37	3	78649389	78649389	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	ENST00000463268	-1	known	p.A163V	1.000	470	0%	118	40.7%	28	25%	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952074	178952074	+	Missense_Mutation	SNP	G	G	A	rs121913283		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_006218.2	+1	reviewed	p.M1043I	1.000	186	0%	32	31.2%	5	100%	benign(0.256)	deleterious(0.02)	neutral(0.410)	HMMSmart_PI3Kc,superfamily_Kinase_like
EPHA5	2044	genome.wustl.edu	37	4	66213802	66213802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_004439.5	-1	reviewed	p.E876D	1.000	224	0%	69	39.1%	0	-	possibly_damaging(0.908)	tolerated(0.08)	deleterious(0.661)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TKTL2	84076	genome.wustl.edu	37	4	164393389	164393389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_032136.4	-1	validated	p.R500C	0.431	229	0%	310	26.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Transketolase_C,superfamily_Transketo_C_like
ADCY2	108	genome.wustl.edu	37	5	7709334	7709334	+	Missense_Mutation	SNP	G	G	A	rs141886153	by1000genomes	TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_020546.2	+1	reviewed	p.R471Q	0.998	85	0%	25	48%	0	-	benign(0.028)	tolerated(0.44)	neutral(0.014)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591142	67591154	+	Frame_Shift_Del	DEL	CAATACTTGATGT	CAATACTTGATGT	-	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	CAATACTTGATGT	CAATACTTGATGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_181523.1	+1	reviewed	p.Q579fs	1.000:1.000:0.989:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
HTR4	3360	genome.wustl.edu	37	5	147928270	147928270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001040173.2	-1	reviewed	p.T105M	1.000	122	0%	35	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
NMUR2	56923	genome.wustl.edu	37	5	151775075	151775075	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_020167.4	-1	reviewed	p.V294	0.986	228	0%	92	44.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF292	23036	genome.wustl.edu	37	6	87964597	87964597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_015021.1	+1	validated	p.Y417C	1.000	230	0%	70	41.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ESR1	2099	genome.wustl.edu	37	6	152419923	152419923	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_000125.3	+1	reviewed	p.Y537S	0.999	184	0%	122	40.2%	42	47.6%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
CADPS2	93664	genome.wustl.edu	37	7	122261661	122261661	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_017954.10	-1	reviewed	p.S326	0.527	111	0%	30	33.3%	4	100%	-	-	-	NULL
CHCHD3	54927	genome.wustl.edu	37	7	132659959	132659959	+	Silent	SNP	G	G	A	rs193039532	by1000genomes	TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_017812.2	-1	provisional	p.S113	0.018	157	0%	106	43.4%	69	47.8%	-	-	-	HMMPfam_DUF737
EPHB6	2051	genome.wustl.edu	37	7	142563379	142563379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_004445.3	+1	reviewed	p.C366G	1.000	41	0%	65	27.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Fibronectin type III
CNTNAP2	26047	genome.wustl.edu	37	7	147815290	147815290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_014141.5	+1	reviewed	p.D822N	1.000	225	0%	114	41.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
TEK	7010	genome.wustl.edu	37	9	27169602	27169602	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_000459.3	+1	reviewed	p.S201	0.962	125	0%	26	38.5%	0	-	-	-	-	NULL
ST6GALNAC6	30815	genome.wustl.edu	37	9	130653159	130653159	+	Missense_Mutation	SNP	C	C	T	rs193112516	by1000genomes	TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_013443.3	-1	provisional	p.R154H	1.000	185	0%	257	39.3%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_29
ITIH5	80760	genome.wustl.edu	37	10	7608296	7608296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_030569.5	-1	validated	p.R742C	1.000	197	0%	305	25.6%	31	3.2%	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	HMMPfam_ITI_HC_C
WDFY4	57705	genome.wustl.edu	37	10	50151419	50151419	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	ENST00000312002	+1	known	p.R1649C	0.234	139	0%	129	62.8%	2	0%	-	-	-	HMMPfam_Beach,superfamily_BEACH domain
TACR2	6865	genome.wustl.edu	37	10	71174808	71174808	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001057.2	-1	validated	p.L160	0.232	48	0%	123	28.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
KNDC1	85442	genome.wustl.edu	37	10	135026298	135026298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_152643.6	+1	validated	p.A1439T	0.994	94	0%	261	25.7%	0	-	possibly_damaging(0.951)	tolerated(0.05)	deleterious(0.740)	superfamily_Ras GEF
OR8I2	120586	genome.wustl.edu	37	11	55861593	55861593	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001003750.1	+1	provisional	p.A270	0.001	135	0%	40	12.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CNTN5	53942	genome.wustl.edu	37	11	100095508	100095508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_014361.2	+1	reviewed	p.D657N	1.000	313	0%	78	42.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
DSCAML1	57453	genome.wustl.edu	37	11	117335865	117335865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_020693.2	-1	provisional	p.R1080W	1.000	81	0%	52	34.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
KCNA5	3741	genome.wustl.edu	37	12	5153592	5153592	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_002234.2	+1	reviewed	p.P93	0.000	13	0%	16	50%	0	-	-	-	-	NULL
RAP1B	5908	genome.wustl.edu	37	12	69042552	69042552	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001010942.1	+1	validated	p.K16	1.000	288	0%	183	38.8%	41	26.8%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SETD1B	23067	genome.wustl.edu	37	12	122260947	122260947	+	Missense_Mutation	SNP	G	G	A	rs144871159	by1000genomes	TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_015048.1	+1	validated	p.A1445T	0.043	7	0.000	26	0.538	1	0%	unknown(0)	-	-	NULL
GPR12	2835	genome.wustl.edu	37	13	27333525	27333525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_005288.3	-1	validated	p.T147M	1.000	73	0%	150	40%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
POTEM	641455	genome.wustl.edu	37	14	19990629	19990629	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001145442.1	-1	provisional	p.E483fs	0.992	-	-	-	-	-	-	-	-	-	NULL
OR4K15	81127	genome.wustl.edu	37	14	20444672	20444672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001005486.1	+1	provisional	p.P332H	0.000	176	0%	35	37.1%	0	-	benign(0.241)	tolerated(0.4)	neutral(0.041)	superfamily_SSF81321
KIAA0317	9870	genome.wustl.edu	37	14	75151252	75151252	+	Missense_Mutation	SNP	C	C	T	rs140239552	by1000genomes	TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001039479.1	-1	validated	p.V50M	1.000	80	0%	42	35.7%	3	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SIN3A	25942	genome.wustl.edu	37	15	75688599	75688599	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001145357.1	-1	reviewed	p.R698T	1.000	93	0%	42	52.4%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDH1	999	genome.wustl.edu	37	16	68862107	68862107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_004360.3	+1	reviewed	p.R732Q	1.000	389	0%	213	35.2%	58	6.8%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Cadherin_C
PIGW	284098	genome.wustl.edu	37	17	34892971	34892971	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_178517.3	+1	validated	p.K7	1.000	216	0%	534	19.7%	4	25%	-	-	-	NULL
SECTM1	6398	genome.wustl.edu	37	17	80280039	80280039	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_003004.2	-1	reviewed	p.*249Q	0.001	106	0%	248	45.6%	0	-	-	-	-	NULL
COLEC12	81035	genome.wustl.edu	37	18	335006	335006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_130386.2	-1	validated	p.G518S	1.000	12	0%	14	57.1%	0	-	unknown(0)	-	-	NULL
PRX	57716	genome.wustl.edu	37	19	40900052	40900052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_181882.2	-1	reviewed	p.V1403I	0.247	96	1%	220	41.8%	1	100%	benign(0.125)	tolerated(0.09)	neutral(0.307)	NULL
ATRN	8455	genome.wustl.edu	37	20	3553556	3553556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_139321.2	+1	reviewed	p.E684K	0.658	219	0%	65	43.1%	20	40%	benign(0.01)	tolerated(0.61)	neutral(0.005)	HMMPfam_PSI,HMMSmart_SM00423
SERHL2	253190	genome.wustl.edu	37	22	42951002	42951002	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_014509.3	+1	provisional	p.W27*	1.000	102	0%	221	24.4%	1	0%	-	-	-	superfamily_alpha/beta-Hydrolases
PLXNB2	23654	genome.wustl.edu	37	22	50728596	50728596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_012401.2	-1	validated	p.E140K	0.999	78	0%	147	36.7%	35	31.4%	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CACNA1F	778	genome.wustl.edu	37	X	49087401	49087401	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_005183.2	-1	reviewed	p.L144	0.993	39	2.6%	88	40.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
OR13H1	347468	genome.wustl.edu	37	X	130678702	130678702	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11F-01A-11D-A10M-09	TCGA-B5-A11F-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9376ef9-44b3-4d58-aed6-002c5874d685	eb491470-4c0c-4b52-a1ae-d90de0b34ac2	NM_001004486.1	+1	provisional	p.R219*	0.000	330	0%	100	45%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
