Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PADI3	51702	genome.wustl.edu	37	1	17586185	17586185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_016233.2	+1	reviewed	p.R69C	0.850	11	0%	19	26.3%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	superfamily_Cupredoxin,HMMPfam_PAD_N
NRAS	4893	genome.wustl.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290	byCluster	TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_002524.3	-1	reviewed	p.Q61R	1.000	70	0%	74	31.1%	12	33.3%	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPN7	5778	genome.wustl.edu	37	1	202119438	202119438	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_080588.1	-1	reviewed	e8+1	1.000	18	0%	24	41.7%	0	-	-	-	-	-
PASK	23178	genome.wustl.edu	37	2	242076462	242076462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_015148.2	-1	validated	p.A365V	0.981	15	0%	15	53.3%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00091
VGLL4	9686	genome.wustl.edu	37	3	11600890	11600890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_001128219.1	-1	validated	p.R179C	1.000	10	0%	12	50%	33	42.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPHA3	2042	genome.wustl.edu	37	3	89462340	89462340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_005233.5	+1	reviewed	p.D604E	1.000	71	0%	18	27.8%	0	-	possibly_damaging(0.944)	deleterious(0.03)	deleterious(0.753)	superfamily_Protein kinase-like (PK-like)
RAB28	9364	genome.wustl.edu	37	4	13462414	13462414	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	ENST00000511649	-1	known	p.L23F	1.000	99	0%	56	17.9%	1	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
DCHS2	54798	genome.wustl.edu	37	4	155305543	155305543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_017639.3	-1	validated	p.A71T	0.000	108	0%	51	29.4%	0	-	benign(0.239)	tolerated(0.06)	neutral(0.347)	HMMPfam_Cadherin,superfamily_Cadherin-like
PIK3R1	5295	genome.wustl.edu	37	5	67591132	67591134	+	In_Frame_Del	DEL	GAC	GAC	-	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_181523.1	+1	reviewed	p.T576in_frame_del	1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
RASA1	5921	genome.wustl.edu	37	5	86672252	86672252	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_002890.1	+1	reviewed	p.A685G	1.000	77	0%	21	38.1%	9	22.2%	benign(0.332)	tolerated(0.32)	neutral(0.128)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
AQPEP	206338	genome.wustl.edu	37	5	115336875	115336875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_173800.4	+1	validated	p.V587I	0.000	51	0%	51	41.2%	0	-	benign(0.003)	tolerated(0.2)	neutral(0.049)	NULL
PCDHA11	56138	genome.wustl.edu	37	5	140249148	140249148	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_018902.3	+1	reviewed	p.L154	1.000	27	0%	46	34.8%	0	-	-	-	-	superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140724707	140724707	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_018916.3	+1	reviewed	p.I369	0.399	72	0%	82	26.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FNDC1	84624	genome.wustl.edu	37	6	159653395	159653395	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	ENST00000329629	+1	known	p.G513S	0.005	10	0%	11	72.7%	1	0%	-	-	-	NULL
LOC340268	340268	genome.wustl.edu	37	7	9767835	9767835	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	XR_041608.1	+1	model	NULL	0.999	32	0%	39	41%	0	-	-	-	-	-
WBSCR17	64409	genome.wustl.edu	37	7	70853324	70853324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_022479.1	+1	reviewed	p.V176I	1.000	32	0%	29	34.5%	1	0%	benign(0.046)	tolerated(1)	neutral(0.003)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
ASAP1	50807	genome.wustl.edu	37	8	131140248	131140248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_018482.2	-1	validated	p.D436Y	1.000	66	0%	66	30.3%	5	40%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6013095	6013095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_012416.2	-1	validated	p.D838G	1.000	45	0%	83	38.6%	8	12.5%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_ARM-type_fold
CDC123	8872	genome.wustl.edu	37	10	12259467	12259467	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_006023.2	+1	validated	e6+1	1.000	96	0%	88	31.8%	0	-	-	-	-	-
KIAA1462	57608	genome.wustl.edu	37	10	30318034	30318034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_020848.2	-1	validated	p.S348L	0.970	33	0%	50	24%	4	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
NRP1	8829	genome.wustl.edu	37	10	33469025	33469025	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_003873.5	-1	validated	p.Q917H	1.000	241	0%	149	28.2%	18	50%	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
PTEN	5728	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	TACT	TACT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	ENST00000371953	+1	known	p.T319fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720833	89720836	+	Frame_Shift_Del	DEL	AAAT	AAAT	-	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	AAAT	AAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	ENST00000371953	+1	known	p.N329fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
MUC5B	727897	genome.wustl.edu	37	11	1257720	1257720	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_002458.1	+1	validated	p.I998	0.000	18	0%	10	60%	13	38.4%	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
PIK3C2A	5286	genome.wustl.edu	37	11	17115924	17115924	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_002645.2	-1	validated	p.V1445	0.526	108	0%	139	34.5%	3	33.3%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
BIRC3	330	genome.wustl.edu	37	11	102206738	102206738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_001165.3	+1	reviewed	p.Q456K	1.000	83	0%	110	20.9%	31	58%	possibly_damaging(0.501)	deleterious(0.02)	deleterious(0.550)	HMMPfam_CARD,HMMSmart_CARD,superfamily_DEATH_like,superfamily_SSF57924
SGCG	6445	genome.wustl.edu	37	13	23894810	23894810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_000231.2	+1	reviewed	p.A205T	1.000	72	0%	82	39%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sarcoglycan_1
PSMC6	5706	genome.wustl.edu	37	14	53184972	53184972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_002806.3	+1	reviewed	p.K220R	1.000	233	0%	233	33.5%	61	44.2%	benign(0.207)	deleterious(0.03)	neutral(0.385)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
DYNC1H1	1778	genome.wustl.edu	37	14	102477136	102477136	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_001376.4	+1	reviewed	p.P2155	0.157	53	0%	34	29.4%	5	20%	-	-	-	superfamily_SSF52540
C15orf2	23742	genome.wustl.edu	37	15	24922443	24922460	+	In_Frame_Del	DEL	TCTAATGAGAAAGGAGGC	TCTAATGAGAAAGGAGGC	-	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	TCTAATGAGAAAGGAGGC	TCTAATGAGAAAGGAGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_018958.2	+1	reviewed	p.NEKGGS478in_frame_del	0.000:0.000:0.003:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.003:0.005:0.006:0.004:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
AQP9	366	genome.wustl.edu	37	15	58467155	58467155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_020980.3	+1	reviewed	p.V139M	0.000	111	0%	45	33.3%	1	0%	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMPfam_MIP,superfamily_Aquaporin-like
TAOK2	9344	genome.wustl.edu	37	16	30002432	30002432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_004783.2	+1	validated	p.R898Q	1.000	6	0.000	11	0.364	37	48.6%	unknown(0)	deleterious(0.02)	-	NULL
SLC38A7	55238	genome.wustl.edu	37	16	58714008	58714008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_018231.1	-1	provisional	p.N8S	0.977	13	0%	13	46.2%	6	33.3%	benign(0)	tolerated(1)	-	NULL
PFAS	5198	genome.wustl.edu	37	17	8158879	8158879	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_012393.2	+1	reviewed	p.R148	1.000	40	0%	37	35.1%	2	50%	-	-	-	superfamily_PurS-like
SERTAD1	29950	genome.wustl.edu	37	19	40928825	40928825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_013376.3	-1	validated	p.L210P	1.000	9	0.000	22	0.318	63	34.9%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
PWP2	5822	genome.wustl.edu	37	21	45535739	45535740	+	Frame_Shift_Ins	INS	-	-	GGAAA	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_005049.2	+1	validated	p.A260fs	0.003:0.998	-	-	-	-	-	-	-	-	-	superfamily_Peptidase_S9A_N,superfamily_WD40_like
MCM5	4174	genome.wustl.edu	37	22	35809931	35809931	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_006739.3	+1	reviewed	p.T385	0.756	56	0%	36	44.4%	35	42.8%	-	-	-	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000210082	0	genome.wustl.edu	37	MT	2627	2627	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	ENST00000387347	+1	known	NULL	NULL	26	0%	51	90.2%	7946	95.4%	-	-	-	-
MAGIX	79917	genome.wustl.edu	37	X	49019238	49019238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_024859.2	+1	validated	p.R4H	0.002	12	0%	24	33.3%	0	-	probably_damaging(0.989)	tolerated(0.37)	neutral(0.459)	NULL
MCF2	4168	genome.wustl.edu	37	X	138713563	138713563	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_001099855.1	-1	reviewed	p.I153	1.000	45	0%	20	50%	0	-	-	-	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150840887	150840887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TD-01A-11D-A10B-09	TCGA-BS-A0TD-10A-01D-A10B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	712ba532-fb1a-43fa-a356-b446b509ceb7	47f826a1-96ed-4f4d-94e0-49f4460ef44f	NM_173493.2	+1	reviewed	p.E557G	0.000	70	0%	62	38.7%	0	-	unknown(0)	deleterious(0.01)	-	NULL
